|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
199-541 |
2.25e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.83 E-value: 2.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 199 QQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQ 278
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELE----ELEAELAELEAELEELR-LELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 279 AEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEELGAV 358
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE-AELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 359 RLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEE 438
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 439 SLQQQQQEQEETLKLCRE-----EHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQevkdtVDGQRILEKKGSA 513
Cdd:COG1196 454 LEEEEEALLELLAELLEEaalleAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-----LAGLRGLAGAVAV 528
|
330 340
....*....|....*....|....*...
gi 569008870 514 VLKDLKRqlhLERKRADKLQERLQEILT 541
Cdd:COG1196 529 LIGVEAA---YEAALEAALAAALQNIVV 553
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
195-497 |
3.26e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 3.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 195 IEELQQRKEAdLKAQlART----QKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSEL 270
Cdd:COG1196 195 LGELERQLEP-LERQ-AEKaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 271 ASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQ 350
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE-EELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 351 HKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQvhsmdgakgwfe 430
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL------------ 419
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008870 431 RRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEV 497
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
145-434 |
3.26e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 3.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 145 LKWEMEREEKKLLWEQLQglELSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKEAdLKAQLARTQKLQQELEAAN 224
Cdd:COG1196 232 LKLRELEAELEELEAELE--ELEAELEELEAELAELEAELEEL----RLELEELELELEE-AQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 225 QSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSR 304
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAELEEELEELEEELEE-LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 305 LLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL--AMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHE 382
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLeeELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 569008870 383 DKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDG-AKGWFERRLK 434
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGfLEGVKAALLL 516
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
199-541 |
4.67e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.25 E-value: 4.67e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 199 QQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTaktqelnmLREQTSELASELQHRQ 278
Cdd:TIGR02168 220 AELRELELALLVLRLEELREELEELQEELKEAEEELE----ELTAELQELEEKLEE--------LRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 279 AEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAV 358
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 359 RLRHEKeLLGVRARYERELRELHEdKKRQEEELRGQIREEKARtreLENLQHTVEELQAQVhsmdgakgwfERRLKEAEE 438
Cdd:TIGR02168 368 EELESR-LEELEEQLETLRSKVAQ-LELQIASLNNEIERLEAR---LERLEDRRERLQQEI----------EELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 439 SLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVlkdl 518
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV---- 508
|
330 340
....*....|....*....|...
gi 569008870 519 kRQLHLERKRADKLQERLQEILT 541
Cdd:TIGR02168 509 -KALLKNQSGLSGILGVLSELIS 530
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
190-535 |
5.78e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 5.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 190 DSRNKIEELQQR-KEADLKAQLARTQ--KLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAkTQELNMLREQ 266
Cdd:TIGR02169 174 KALEELEEVEENiERLDLIIDEKRQQleRLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAI-ERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 267 TSELASELQHRQAEYEELMGQKDDLNSQLQ-----ESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvMLDELA 341
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEQLLEELNKKIKdlgeeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-KLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 342 METLQEKSQHKEELGAVRLRHEK---ELLGVRARYERELRELHEdkkrQEEELRGQIREEKARTRELENLQHTVEELQAQ 418
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEE----VDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 419 vhsmdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHA---AELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQ 495
Cdd:TIGR02169 408 -----------LDRLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 569008870 496 EvkdtvdgQRILEKKgsavLKDLKRQLHLERKRADKLQER 535
Cdd:TIGR02169 477 E-------YDRVEKE----LSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
143-434 |
4.08e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 4.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 143 VELKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQT----------EKETLFNDSRNKIEELQQRKEAdLKAQLAR 212
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEeleqlrkeleELSRQISALRKDLARLEAEVEQ-LEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 213 TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELaselqhrQAEYEELMGQKDDLN 292
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDEL-------RAELTLLNEEAANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 293 SQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMET---LQEKSQHKEELGAVRLRHEKELLGV 369
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELealLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569008870 370 RA---------RYERELRELHEDKKRQEEELRGQIREEKARTRELENLqhTVEELQAQVHSMDGAKGWFERRLK 434
Cdd:TIGR02168 904 REleskrselrRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL--TLEEAEALENKIEDDEEEARRRLK 975
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
192-539 |
4.15e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 4.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 192 RNKIEELqqrkEADLKAQLARTQKLQQELEAANQSLAELRDQrqgerlehaaaLRALQDQIQTaKTQELNMLREQTSELA 271
Cdd:TIGR02168 676 RREIEEL----EEKIEELEEKIAELEKALAELRKELEELEEE-----------LEQLRKELEE-LSRQISALRKDLARLE 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 272 SELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMetlqEKSQH 351
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA----ELTLL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 352 KEELGAVRLRhEKELLGVRARYERELRELHEDKKRQEEELrgqireeKARTRELENLQHTVEELQAQVHSMDGAKGWFER 431
Cdd:TIGR02168 816 NEEAANLRER-LESLERRIAATERRLEDLEEQIEELSEDI-------ESLAAEIEELEELIEELESELEALLNERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 432 RLKEAEESLQQQQQEqeetlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVkdTVDGQRILEKKG 511
Cdd:TIGR02168 888 ALALLRSELEELSEE--------LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL--SEEYSLTLEEAE 957
|
330 340
....*....|....*....|....*...
gi 569008870 512 SAVLKDLKRQLHLERkRADKLQERLQEI 539
Cdd:TIGR02168 958 ALENKIEDDEEEARR-RLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
7-539 |
1.94e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 1.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFS----KAQKLCSQLEQLELENRQLKEgvpgaAGA 82
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIArleeRRRELEERLEELEEELAELEE-----ELE 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 83 HVDGELLRLQAENTALQKNMAALQERYGKEAVRpsavgegqgdppgdvlptplapmpLAEVELKWEMEREEKKLLWEQLQ 162
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEAEEA------------------------LLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 163 GLELSEKLKKKQESfcRLQTEKETLfndsrnkiEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHA 242
Cdd:COG1196 390 EALRAAAELAAQLE--ELEEAEEAL--------LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 243 AALRALQDQIQTAKTQELNM--LREQTSELASELQHRQAEYEELMGQKDDlnSQLQESLRANSRLLEQLQEIGQEKEQLT 320
Cdd:COG1196 460 ALLELLAELLEEAALLEAALaeLLEELAEAAARLLLLLEAEADYEGFLEG--VKAALLLAGLRGLAGAVAVLIGVEAAYE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 321 QDLQEARKSAEKRKVMLDELAME--------------TLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKR 386
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAaaieylkaakagraTFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 387 QEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDG--AKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKG 464
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGgsAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 569008870 465 KDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEI 539
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
203-423 |
2.89e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 2.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 203 EADLKAQLARTQKLQQELEAANQSLAELRDQR--------QGERLEHAAALRALQDQIQTA-----KTQELNMLREQTSE 269
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIellepireLAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 270 LASELQHRQAEYEELMGQKDDLNSQLQEslransrLLEQLQEI-GQEKEQLTQDLQEARKSAEKRKVMLDELAmetlqek 348
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDE-------LEAQIRGNgGDRLEQLEREIERLERELEERERRRARLE------- 365
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 569008870 349 sQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMD 423
Cdd:COG4913 366 -ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP 439
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
148-377 |
2.60e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 148 EMEREEKKLlwEQLQGL-ELSEKLKKKQESFCRLQTEKETLfndsrnKIEELQQRKEAdLKAQLARtqkLQQELEAANQS 226
Cdd:COG4913 243 ALEDAREQI--ELLEPIrELAERYAAARERLAELEYLRAAL------RLWFAQRRLEL-LEAELEE---LRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 227 LAELRDQRQgerlEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLL 306
Cdd:COG4913 311 LERLEARLD----ALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALR 386
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008870 307 EQLQEIGQEKEQLTQDLQEARKSAEKRKvmldELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYEREL 377
Cdd:COG4913 387 AEAAALLEALEEELEALEEALAEAEAAL----RDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
167-656 |
2.82e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 2.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 167 SEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAalr 246
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA--- 1400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 247 alqdQIQTAKTQELNMlREQTSELASELQHRQAEYEelmgQKDDLNSQLQESLRANSrlLEQLQEIGQEKEQLTQDLQEA 326
Cdd:PTZ00121 1401 ----EEDKKKADELKK-AAAAKKKADEAKKKAEEKK----KADEAKKKAEEAKKADE--AKKKAEEAKKAEEAKKKAEEA 1469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 327 RKSAEKRKVMLDELAMETLQEKSQH-KEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIR--EEKARTR 403
Cdd:PTZ00121 1470 KKADEAKKKAEEAKKADEAKKKAEEaKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKkaEEKKKAD 1549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 404 ELENlqhtVEELQA--QVHSMDGAKGWFERR---LKEAEESLQQQQQEQEETLKLCREEHA--AELKGKDEELQNVREQL 476
Cdd:PTZ00121 1550 ELKK----AEELKKaeEKKKAEEAKKAEEDKnmaLRKAEEAKKAEEARIEEVMKLYEEEKKmkAEEAKKAEEAKIKAEEL 1625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 477 QQAQEERDGHVKTISNLKQEVKDTvDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEiltnskSRTGLEELVLSE 556
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKA-EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED------EKKAAEALKKEA 1698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 557 MNSPSRTQTGDSSSVSSFSYREILKEKESSAIPARSLSSSPQAQPPRPAELS-DEEVAELFQRLAETQQEKWMLEEKVKH 635
Cdd:PTZ00121 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKkDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
490 500
....*....|....*....|.
gi 569008870 636 LEVSSASMAEDLCRKSAIIET 656
Cdd:PTZ00121 1779 AVIEEELDEEDEKRRMEVDKK 1799
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
146-404 |
3.38e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 3.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 146 KWEMEREEKKLLWEQLQGLELS-EKLKKKQESFCRLQTEKETLFNDSRNKIEELQ-------QRKEADLKAQLARTQKLQ 217
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEElEKLTEEISELEKRLEEIEQLLEELNKKIKDLGeeeqlrvKEKIGELEAEIASLERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 218 QELEAANQSLAELRDQRQGERLEHAAALRALQDQIQT-------------AKTQELNMLREQTSELASELQHRQAEYEEL 284
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEerkrrdklteeyaELKEELEDLRAELEEVDKEFAETRDELKDY 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 285 MGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMEtLQEKSQHKEELGAVRLRHEK 364
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE-IKKQEWKLEQLAADLSKYEQ 469
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 569008870 365 ELLGVRARYERELRELHEdKKRQEEELRGQIREEKARTRE 404
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSK-LQRELAEAEAQARASEERVRG 508
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
208-419 |
1.62e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 208 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQiqtakTQELNMLREQTSELASELQHRQAEYEELMGQ 287
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----ERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 288 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELgavrlrheKELL 367
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL--------AELA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 569008870 368 GVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 419
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
168-427 |
2.30e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 2.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 168 EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQrKEADLKAQLARTQKLQQELEAANQSLAELRDQ---RQGERLEHAAA 244
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISS-ELPELREELEKLEKEVKELEELKEEIEELEKElesLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 245 LRALQDQIQTAKtQELNMLREQTSELaSELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQ 324
Cdd:PRK03918 261 IRELEERIEELK-KEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 325 EARKSAEKRKVMLDELamETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRE 404
Cdd:PRK03918 339 RLEELKKKLKELEKRL--EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416
|
250 260
....*....|....*....|...
gi 569008870 405 LENlqhTVEELQAQVHSMDGAKG 427
Cdd:PRK03918 417 LKK---EIKELKKAIEELKKAKG 436
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
7-325 |
2.93e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 2.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKlcsQLEQLELENRQLKEGVpgaagAHVDG 86
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK---EIEQLEQEEEKLKERL-----EELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 87 ELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEGQGDPPGDvlptpLAPMPLAEVELKWEMEREEKKLLWEQLQGLEL 166
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR-----LSHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 167 S-EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEaDLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAAL 245
Cdd:TIGR02169 820 KlNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE-NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 246 RALQDQIQTAKTQ--ELNMLREQTSELASELQHRQAEYEELMGQkddlnsqlQESLRANSRLLEQLQEIGQEKEQLTQDL 323
Cdd:TIGR02169 899 RELERKIEELEAQieKKRKRLSELKAKLEALEEELSEIEDPKGE--------DEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
..
gi 569008870 324 QE 325
Cdd:TIGR02169 971 EP 972
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
211-398 |
3.27e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.19 E-value: 3.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 211 ARTQKLQQELEAANQSLAELrdQRQGERLEH----AAALR-------ALQDQIQTAKtQELNMLREQTSELASELQHRQA 279
Cdd:COG3096 893 DRLEELREELDAAQEAQAFI--QQHGKALAQleplVAVLQsdpeqfeQLQADYLQAK-EQQRRLKQQIFALSEVVQRRPH 969
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 280 ----EYEELMGQKDDLNSQLQESLR----ANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQ----- 346
Cdd:COG3096 970 fsyeDAVGLLGENSDLNEKLRARLEqaeeARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEElgvqa 1049
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 569008870 347 ----------EKSQHKEELGAVRLRhEKELLGVRARYERELRELHEDKKRQEEELRgQIREE 398
Cdd:COG3096 1050 daeaeerariRRDELHEELSQNRSR-RSQLEKQLTRCEAEMDSLQKRLRKAERDYK-QEREQ 1109
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
30-405 |
3.54e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 3.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 30 ELRKNGVELSSLRQKVAYLDKEFSKAQKLCSQLEQLELENRQLKEgvpgaagahvdgellRLQAENTALQKNMAALQERY 109
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE---------------ELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 110 GKEAVRpsavgegqgdppgdvlptpLAPMPLAEVELKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFN 189
Cdd:TIGR02168 743 EQLEER-------------------IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 190 DSRNKIEELQQRKEADLKAQLaRTQKLQQELEAANQSLAELRDQRqGERLEHAAALRALQDQIQTAKTQ---ELNMLREQ 266
Cdd:TIGR02168 804 ALDELRAELTLLNEEAANLRE-RLESLERRIAATERRLEDLEEQI-EELSEDIESLAAEIEELEELIEElesELEALLNE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 267 TSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKS-AEKRKVMLDELA---- 341
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEalen 961
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569008870 342 -METLQEKSQHK--------EELGAVRLRHEKELLGVRARYErELRELHEDKKRQEEELRGQIREEKARTREL 405
Cdd:TIGR02168 962 kIEDDEEEARRRlkrlenkiKELGPVNLAAIEEYEELKERYD-FLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
151-414 |
4.29e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 4.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 151 REEKKLLWEQLQGLElsEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEAD-----LKAQLARTQKLQQELEAANQ 225
Cdd:COG4913 609 RAKLAALEAELAELE--EELAEAEERLEALEAELDAL-QERREALQRLAEYSWDEidvasAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 226 SLAELRDQrqgerlehaaaLRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRAnsRL 305
Cdd:COG4913 686 DLAALEEQ-----------LEELEAELEELE-EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LL 751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 306 LEQLQEIGQEK--EQLTQDLQEARKSAEKRkvmLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRArYERELRELHED 383
Cdd:COG4913 752 EERFAAALGDAveRELRENLEERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADLESLPE-YLALLDRLEED 827
|
250 260 270
....*....|....*....|....*....|..
gi 569008870 384 K-KRQEEELRGQIREEKarTRELENLQHTVEE 414
Cdd:COG4913 828 GlPEYEERFKELLNENS--IEFVADLLSKLRR 857
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
168-354 |
1.03e-06 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 52.03 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 168 EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRA 247
Cdd:pfam03528 11 AELEKENAEFYRLKQQLEAEFNQKRAKFKELYLAKEEDLKRQNAVLQEAQVELDALQNQLALARAEMENIKAVATVSENT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 248 LQDQIQTAKTQelnmLREQTSELASELQHRQAEYE-----ELMGQKDDLNSQLQESLRANSRLLEQLQEiGQEKEQLTQD 322
Cdd:pfam03528 91 KQEAIDEVKSQ----WQEEVASLQAIMKETVREYEvqfhrRLEQERAQWNQYRESAEREIADLRRRLSE-GQEEENLEDE 165
|
170 180 190
....*....|....*....|....*....|....
gi 569008870 323 LQEARKSAEKRK--VMLDELAMETLQEKSQHKEE 354
Cdd:pfam03528 166 MKKAQEDAEKLRsvVMPMEKEIAALKAKLTEAED 199
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
166-365 |
1.12e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 166 LSEKLKKKQESFCRLQTEKETLFNDsrnKIEELQQRKEAdLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAAL 245
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLK---ELKELEEELKE-AEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 246 RALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEslrANSRLLEQLQEIGQEKEQLTQDLQE 325
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE---LQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 569008870 326 ARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKE 365
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
194-418 |
2.00e-06 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 51.76 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 194 KIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAalRALQDQIqTAKTQELNMLREQTSELASE 273
Cdd:NF012221 1566 RAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETNGQAQRDAILEES--RAVTKEL-TTLAQGLDALDSQATYAGES 1642
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 274 LQHRQAEYEElmGQKDDLNSQLQEslrANSRLLEQLQEIgqeKEQLTQDLQEARKSAEKRkvmldelamETLQEKSQHKe 353
Cdd:NF012221 1643 GDQWRNPFAG--GLLDRVQEQLDD---AKKISGKQLADA---KQRHVDNQQKVKDAVAKS---------EAGVAQGEQN- 1704
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569008870 354 elgavrlRHEKELLGVRARYERELRELHEDKKRQEEELR---GQIREEKARTR-ELENLQHTVEELQAQ 418
Cdd:NF012221 1705 -------QANAEQDIDDAKADAEKRKDDALAKQNEAQQAesdANAAANDAQSRgEQDASAAENKANQAQ 1766
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
165-541 |
2.46e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 165 ELSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKE----------ADLKAQLARTQKLQQELEAANQSLAELR 231
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELaeeVRDLRERLEELEEERDdllaeaglddADAEAVEARREELEDRDEELRDRLEECR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 232 dQRQGERLEHAAALRALQDQIQTAKTQelnmLREQTSELASELQHRQAEYEELMGQKDDLNSQLqESLRA---------- 301
Cdd:PRK02224 335 -VAAQAHNEEAESLREDADDLEERAEE----LREEAAELESELEEAREAVEDRREEIEELEEEI-EELRErfgdapvdlg 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 302 -----NSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDE-------------LAMETLQEKSQHKEELGAVRLRHE 363
Cdd:PRK02224 409 naedfLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsPHVETIEEDRERVEELEAELEDLE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 364 KELLGVRARYER--ELRELH------EDKKRQEEELRGQIREEKARTRE-LENLQHTVEEL----QAQVHSMDGAKGWFE 430
Cdd:PRK02224 489 EEVEEVEERLERaeDLVEAEdrierlEERREDLEELIAERRETIEEKRErAEELRERAAELeaeaEEKREAAAEAEEEAE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 431 RRLKEAEESLQQQQQEQEETLKLCR-EEHAAELKGKDEELQNVREQLQQAQE---ERDGHVKTISNLKQEVKDTVDGQRI 506
Cdd:PRK02224 569 EAREEVAELNSKLAELKERIESLERiRTLLAAIADAEDEIERLREKREALAElndERRERLAEKRERKRELEAEFDEARI 648
|
410 420 430
....*....|....*....|....*....|....*
gi 569008870 507 LEKKGsavlkdlkrqlhlERKRADKLQERLQEILT 541
Cdd:PRK02224 649 EEARE-------------DKERAEEYLEQVEEKLD 670
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
198-419 |
4.11e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 4.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 198 LQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHR 277
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 278 QAEYEELMGQKDDLNSQLQESlRANSRLLEQLQEIGQEKEQLTQDLQEarksaekrkvmlDELAMETLQeksqhkEELGA 357
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQS-PVIQQLRAQLAELEAELAELSARYTP------------NHPDVIALR------AQIAA 302
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 569008870 358 VRLRHEKELLGVRARYERELRELhedkKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 419
Cdd:COG3206 303 LRAQLQQEAQRILASLEAELEAL----QAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
167-519 |
4.76e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 4.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 167 SEKLKKKQESfCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQS--------LAELRDQRQGER 238
Cdd:PTZ00121 1472 ADEAKKKAEE-AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAeeakkadeAKKAEEKKKADE 1550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 239 LEHAAALRALQDQI---QTAKTQELNMLREQTSELASELQHRQAE-----YEELMGQKDDlNSQLQESLRANSRLLEQLQ 310
Cdd:PTZ00121 1551 LKKAEELKKAEEKKkaeEAKKAEEDKNMALRKAEEAKKAEEARIEevmklYEEEKKMKAE-EAKKAEEAKIKAEELKKAE 1629
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 311 EIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELgavrlRHEKELlgvrARYERELRELHEDKKRQEEE 390
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK-----KKAEEA----KKAEEDEKKAAEALKKEAEE 1700
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 391 LRG--QIREEKA-RTRELENLQHTVEELQAQVHSMDgaKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDE 467
Cdd:PTZ00121 1701 AKKaeELKKKEAeEKKKAEELKKAEEENKIKAEEAK--KEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 569008870 468 ELqnVREQLQQAQEERDGHV-KTISNLKQEVKDTVDGQrileKKGSAVLKDLK 519
Cdd:PTZ00121 1779 AV--IEEELDEEDEKRRMEVdKKIKDIFDNFANIIEGG----KEGNLVINDSK 1825
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
311-564 |
5.52e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 5.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 311 EIGQEKEQLTQDLQEARKSAEKRKVMLDELA--METLQEKSQHKEELGAVRLRHEkellgvraryERELRELHEDKKRQE 388
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRqqLERLRREREKAERYQALLKEKR----------EYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 389 EELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEE 468
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 469 LQNVREQLQQAQEERDGHVKTISNLKQEVKDtvdgQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTG 548
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250
....*....|....*.
gi 569008870 549 LEELVLSEMNSPSRTQ 564
Cdd:TIGR02169 393 KLEKLKREINELKREL 408
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
135-333 |
8.23e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 8.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 135 LAPMPLAEVELKWEMEREEKKLLWEQLQglELSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQ 214
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIA--ELEKELAALKKEEKALLKQLAAL-ERRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 215 KLQQELEAANQSLAELRD---------QRQG-----------------------------ERLEHAAALRALQDQIQtAK 256
Cdd:COG4942 87 ELEKEIAELRAELEAQKEelaellralYRLGrqpplalllspedfldavrrlqylkylapARREQAEELRADLAELA-AL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008870 257 TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 333
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
242-512 |
1.07e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 242 AAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQ 321
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 322 DLQEARKSAEKRKVMLDELaMETLQEKSQHKEELGAVRLRHEKELLgVRARYereLRELHEDKKRQEEELRGQIREEKAR 401
Cdd:COG4942 91 EIAELRAELEAQKEELAEL-LRALYRLGRQPPLALLLSPEDFLDAV-RRLQY---LKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 402 TRELENLQHTVEELQAQVhsmdgakgwferrlkeaeeslqQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQE 481
Cdd:COG4942 166 RAELEAERAELEALLAEL----------------------EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
250 260 270
....*....|....*....|....*....|.
gi 569008870 482 ERDGHVKTISNLKQEVKDTVDGQRILEKKGS 512
Cdd:COG4942 224 ELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
142-283 |
1.75e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.24 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 142 EVELKWEMEREEKKLLWEQlqglELSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQrKEADLKAQLARTQKLQQELE 221
Cdd:PRK12704 57 EALLEAKEEIHKLRNEFEK----ELRERRNELQKLEKRLLQKEENL----DRKLELLEK-REEELEKKEKELEQKQQELE 127
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 569008870 222 AANQSLAELRDQRQgERLEHAAALRALQdqiqtAKTQELNMLREQTSELASELQHrqaEYEE 283
Cdd:PRK12704 128 KKEEELEELIEEQL-QELERISGLTAEE-----AKEILLEKVEEEARHEAAVLIK---EIEE 180
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
7-322 |
2.49e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKLCSQLEQLELENRQLKEGVPGAAGAH--- 83
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAeae 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 84 ---VDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEGQGDPPGDVLPTPLAPMPLAE--VELKWEMEREEKKLLW 158
Cdd:TIGR02168 784 ieeLEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEqiEELSEDIESLAAEIEE 863
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 159 EQLQGLELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQ----QRKEADLKAQLARTQ--KLQQELEAANQSLAELRD 232
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRelesKRSELRRELEELREKlaQLELRLEGLEVRIDNLQE 943
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 233 Q---RQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQL 309
Cdd:TIGR02168 944 RlseEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAI 1023
|
330
....*....|...
gi 569008870 310 QEIGQEKEQLTQD 322
Cdd:TIGR02168 1024 EEIDREARERFKD 1036
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
148-533 |
2.68e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 2.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 148 EMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKEAdlKAQLARTQKLQQELEAANQSL 227
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEEL----REELEKLEKLLQL--LPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 228 AELRDQRQgERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQ------ESLRA 301
Cdd:COG4717 149 EELEERLE-ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEeaqeelEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 302 NSRLLEQLQEIGQEKEQLTQDLQEAR------------KSAEKRKVMLDELAM-----------ETLQEKSQHKEELGAV 358
Cdd:COG4717 228 ELEQLENELEAAALEERLKEARLLLLiaaallallglgGSLLSLILTIAGVLFlvlgllallflLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 359 RLRHEKELLgVRARYERELRELHEDKKRQEEELRGQIR------------EEKARTRELENLQHTVEEL--QAQVHSMDG 424
Cdd:COG4717 308 QALPALEEL-EEEELEELLAALGLPPDLSPEELLELLDrieelqellreaEELEEELQLEELEQEIAALlaEAGVEDEEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 425 AKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKD---EELQNVREQLQQAQEERDGHVKTISNLKQEVKDTV 501
Cdd:COG4717 387 LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEeleEELEELEEELEELEEELEELREELAELEAELEQLE 466
|
410 420 430
....*....|....*....|....*....|..
gi 569008870 502 DGQRILEKKgsAVLKDLKRQLHLERKRADKLQ 533
Cdd:COG4717 467 EDGELAELL--QELEELKAELRELAEEWAALK 496
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
180-483 |
3.50e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.43 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 180 LQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSlaelrdqRQGErLEHAAALRALQDQIQTAKTQE 259
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKA-------RQAE-MDRQAAIYAEQERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 260 LNMLREQTSELASElQHRQAEYEELMGQKddlnsqlqeslransRLLEQLQ-EIGQEKEQLTQDLQEARK-----SAEKR 333
Cdd:pfam17380 350 LERIRQEERKRELE-RIRQEEIAMEISRM---------------RELERLQmERQQKNERVRQELEAARKvkileEERQR 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 334 KVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELR----GQIREEKARTRELENLQ 409
Cdd:pfam17380 414 KIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERkrkkLELEKEKRDRKRAEEQR 493
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569008870 410 HTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGkdEELQNVREQLQQAQEER 483
Cdd:pfam17380 494 RKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEM--EERRRIQEQMRKATEER 565
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-719 |
9.62e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 9.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 2 AQALSEEEFQRMQTQLLELrtnnyqlsdELRKNGVELSSLRQKVAYLDKEFSKAQKLCSQLEqlelenRQLKEgvpgaag 81
Cdd:TIGR02168 207 RQAEKAERYKELKAELREL---------ELALLVLRLEELREELEELQEELKEAEEELEELT------AELQE------- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 82 ahVDGELLRLQAENTALQKNMAALQERYGkeavrpSAVGEgqgdppgdvlptplapmpLAEVELKWEMEREEKKLLWEQL 161
Cdd:TIGR02168 265 --LEEKLEELRLEVSELEEEIEELQKELY------ALANE------------------ISRLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 162 QGLELS-EKLKKKQEsfcrlqtEKETLFNDSRNKIEELQQRKEAdLKAQLARTQKLQQELEAANQSLAELRDQRQGERLE 240
Cdd:TIGR02168 319 EELEAQlEELESKLD-------ELAEELAELEEKLEELKEELES-LEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 241 HAAALRALQDQIQTAKTQ------ELNMLREQTSELASELQhrQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQ 314
Cdd:TIGR02168 391 LELQIASLNNEIERLEARlerledRRERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 315 EKEQLTQDLQEARKSAEKRKVMLDELA--METLQEKSQHKEELGAVRLRHE------KELLGVRARYERELRE------- 379
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLErlQENLEGFSEGVKALLKNQSGLSgilgvlSELISVDEGYEAAIEAalggrlq 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 380 --LHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQA----QVHSMDGAKGWFERRLKEAEE--------------- 438
Cdd:TIGR02168 549 avVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGndreILKNIEGFLGVAKDLVKFDPKlrkalsyllggvlvv 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 439 ---------SLQQQQQEQEETLK---------------------LCREEHAAELKGKDEELQnvrEQLQQAQEERDGHVK 488
Cdd:TIGR02168 629 ddldnalelAKKLRPGYRIVTLDgdlvrpggvitggsaktnssiLERRREIEELEEKIEELE---EKIAELEKALAELRK 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 489 TISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGL--------EELVLSEMNSP 560
Cdd:TIGR02168 706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELeerleeaeEELAEAEAEIE 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 561 SRTQTGDSSSVSSFSYREILKEKESSaipARSLSSSPQAQPPRPAELSDeEVAELFQRLAETQQEKWMLEEKVKHLEVSS 640
Cdd:TIGR02168 786 ELEAQIEQLKEELKALREALDELRAE---LTLLNEEAANLRERLESLER-RIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569008870 641 ASMAEDLCRKSAIIEtyVMDSRIDVSVAAGHTDRSGLGSVLRDLvKPGDENLREMNKKLQNMLEEQLTKNMHLHKASVD 719
Cdd:TIGR02168 862 EELEELIEELESELE--ALLNERASLEEALALLRSELEELSEEL-RELESKRSELRRELEELREKLAQLELRLEGLEVR 937
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
144-406 |
1.40e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 144 ELKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQqRKEADLKAQLARTQKLQQELEAA 223
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK-ELEARIEELEEDLHKLEEALNDL 784
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 224 NQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANS 303
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 304 RLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL--AMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELH 381
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELerKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
250 260
....*....|....*....|....*..
gi 569008870 382 EDKKRQ--EEELRGQIREEKARTRELE 406
Cdd:TIGR02169 945 EIPEEElsLEDVQAELQRVEEEIRALE 971
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
140-327 |
1.42e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 140 LAEVELKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKetlfNDSRNKIEELQQRKEADLKA-----QLARTQ 214
Cdd:COG3206 191 LEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL----AEAEARLAALRAQLGSGPDAlpellQSPVIQ 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 215 KLQQELEAANQSLAELRdQRQGERlehAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQ 294
Cdd:COG3206 267 QLRAQLAELEAELAELS-ARYTPN---HPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
170 180 190
....*....|....*....|....*....|....*.
gi 569008870 295 LQESLRANSRL--LEQLQEIGQEK-EQLTQDLQEAR 327
Cdd:COG3206 343 LAELPELEAELrrLEREVEVARELyESLLQRLEEAR 378
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
192-418 |
1.55e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 45.02 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 192 RNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQ-----------RQGERLEHAAALRALQDQIQTAKTQEL 260
Cdd:pfam05667 242 KRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSSfsgssttdtglTKGSRFTHTEKLQFTNEAPAATSSPPT 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 261 NMLREQTSElaselQHRQAEYEELMGQKDDLNS---QLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVML 337
Cdd:pfam05667 322 KVETEEELQ-----QQREEELEELQEQLEDLESsiqELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 338 --DELAMETLQEK----SQHKEELGAVRLRHEKELLgvrARYeRELRELHEDKKRQEEELRGQIREEKARTRELENLQHT 411
Cdd:pfam05667 397 pdAEENIAKLQALvdasAQRLVELAGQWEKHRVPLI---EEY-RALKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQ 472
|
....*..
gi 569008870 412 VEELQAQ 418
Cdd:pfam05667 473 KEELYKQ 479
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
189-418 |
1.89e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.29 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 189 NDSRNKIEELQQRK--EADLKAqlartqkLQQELEAANQSLAELRDQRQG-----ERLEHAAA-LRALQDQIQTAKTQEL 260
Cdd:PRK11281 39 ADVQAQLDALNKQKllEAEDKL-------VQQDLEQTLALLDKIDRQKEEteqlkQQLAQAPAkLRQAQAELEALKDDND 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 261 NMLREQTSELA-SELQHRQAEYEELMG--QKD--DLNSQL----------QESLRANSrllEQLQEIGQEKEQLTQDlqE 325
Cdd:PRK11281 112 EETRETLSTLSlRQLESRLAQTLDQLQnaQNDlaEYNSQLvslqtqperaQAALYANS---QRLQQIRNLLKGGKVG--G 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 326 ARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLrheKELLGVRaryeRELRELHEDkkRQEEELrgQIREEKARTREL 405
Cdd:PRK11281 187 KALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQL---QDLLQKQ----RDYLTARIQ--RLEHQL--QLLQEAINSKRL 255
|
250
....*....|...
gi 569008870 406 ENLQHTVEELQAQ 418
Cdd:PRK11281 256 TLSEKTVQEAQSQ 268
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
171-544 |
2.67e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 171 KKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQD 250
Cdd:TIGR00618 307 QQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQ 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 251 QIQTAKTQE--LNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARK 328
Cdd:TIGR00618 387 QKTTLTQKLqsLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQ 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 329 SAEKRKVMLDELAMETLQEKSQHKEElGAVRLRHEKEllgvraRYERELRELHEDKKRQeeelrgQIREEKARTRELENL 408
Cdd:TIGR00618 467 SLKEREQQLQTKEQIHLQETRKKAVV-LARLLELQEE------PCPLCGSCIHPNPARQ------DIDNPGPLTRRMQRG 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 409 QHTVEELQAQVHSMDGaKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVK 488
Cdd:TIGR00618 534 EQTYAQLETSEEDVYH-QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 569008870 489 TISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSK 544
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR 668
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
7-397 |
2.75e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKvayLDKEFSKAQKLCSQLEQLELENRQLKEGVPGAAGAHVDG 86
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA---LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 87 ELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEGQGDPPGDVLPtplapmpLAEVELKWEMEREEKKLLWEQLQGLEL 166
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-------LIGVEAAYEAALEAALAAALQNIVVED 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 167 SEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARtqklqqELEAANQSLAELRDQRQGERLEHAAALR 246
Cdd:COG1196 556 DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV------DLVASDLREADARYYVLGDTLLGRTLVA 629
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 247 ALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEigQEKEQLTQDLQEA 326
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE--LEEALLAEEEEER 707
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008870 327 RKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIRE 397
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
168-540 |
2.81e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 168 EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEaDLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRA 247
Cdd:TIGR04523 207 KKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEIN-EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 248 LQDQIQTAKTQELNMLREQTSELASELQHRQAEYEElmgQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEAR 327
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEK---KLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 328 KSAEKRKVMLDELametLQEKSQHKEELgaVRLRHEKELLgvraryERELRELHEDKKRQEEELRGQIREEKARTRELEN 407
Cdd:TIGR04523 363 RELEEKQNEIEKL----KKENQSYKQEI--KNLESQINDL------ESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 408 LQHTVEELQAQVHSMDGAKGWFE------RRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQE 481
Cdd:TIGR04523 431 LKETIIKNNSEIKDLTNQDSVKEliiknlDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 482 ERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKR----------------------QLHLERKRADKLQERLQEI 539
Cdd:TIGR04523 511 KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfelkkenlekeideknkeieELKQTQKSLKKKQEEKQEL 590
|
.
gi 569008870 540 L 540
Cdd:TIGR04523 591 I 591
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
7-347 |
3.05e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 7 EEEFQRMQTQL-LELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQklcSQLEQLELENRQLKEGVPGAAGAHVD 85
Cdd:COG4717 169 EAELAELQEELeELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQ---EELEELEEELEQLENELEAAALEERL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 86 GELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEGQGdppgdVLPTPLAPMPLAEVELKWEMEREEKKLLWEQLQGLE 165
Cdd:COG4717 246 KEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLG-----LLALLFLLLAREKASLGKEAEELQALPALEELEEEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 166 LSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQEL--EAANQSLAELRD--QRQGERLEH 241
Cdd:COG4717 321 LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALlaEAGVEDEEELRAalEQAEEYQEL 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 242 AAALRALQDQIQTAKTQELNMLREQT-SELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQ--LQEIGQEKEQ 318
Cdd:COG4717 401 KEELEELEEQLEELLGELEELLEALDeEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDgeLAELLQELEE 480
|
330 340
....*....|....*....|....*....
gi 569008870 319 LTQDLQEARKSAeKRKVMLDELAMETLQE 347
Cdd:COG4717 481 LKAELRELAEEW-AALKLALELLEEAREE 508
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
143-539 |
3.27e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 3.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 143 VELKWEMEREEKKLLWEQLQGLELSEKLKKKQ---ESFCRLQTEKETLFNDSRNKIEELQQRKEAD----LKAQLARTQK 215
Cdd:TIGR04523 242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQkelEQNNKKIKELEKQLNQLKSEISDLNNQKEQDwnkeLKSELKNQEK 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 216 ----LQQELEAANQSLAELRDQRQGERLEhaaaLRALQDQIQTaKTQELNMLREQTSELASELQHRQAEYEELMGQKDDL 291
Cdd:TIGR04523 322 kleeIQNQISQNNKIISQLNEQISQLKKE----LTNSESENSE-KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 292 NSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKeELGAVRLRHEKELlgvrA 371
Cdd:TIGR04523 397 ESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK-NLDNTRESLETQL----K 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 372 RYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMdgakgwferrlkeaeeslqqqqQEQEETL 451
Cdd:TIGR04523 472 VLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL----------------------KEKIEKL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 452 KLCREEHAAELKGKDEELQNVREQLQQAQ--EERDGHVKTISNLKQEVKDTVDGQRILE---KKGSAVLKDLKRQLHLER 526
Cdd:TIGR04523 530 ESEKKEKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTQKSLKKKQEEKQeliDQKEKEKKDLIKEIEEKE 609
|
410
....*....|...
gi 569008870 527 KRADKLQERLQEI 539
Cdd:TIGR04523 610 KKISSLEKELEKA 622
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
150-421 |
3.82e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 150 EREEKKLLWEQLQGLELSEKLKKKQESfcrlqtEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAE 229
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEI------EKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 230 LRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEyEELMGQKDDLNSQLQESLRANSRLLEQL 309
Cdd:pfam02463 308 RKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE-EELEKLQEKLEQLEEELLAKKKLESERL 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 310 QEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEE 389
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
250 260 270
....*....|....*....|....*....|..
gi 569008870 390 ELRGQIREEKARTRELENLQHTVEELQAQVHS 421
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQLELLLSRQKLEER 498
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
185-425 |
4.57e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 185 ETLFNDSRNKIEELQQrKEADLKAQLArtqKLQQELEAANQSLAELRDQRQGERlehaAALRALQDQIQTAKtQELNMLR 264
Cdd:COG3883 15 DPQIQAKQKELSELQA-ELEAAQAELD---ALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAE-AEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 265 EQTSELASELQHRQAEY---EELMGQKD--DLNSQ---LQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVM 336
Cdd:COG3883 86 EELGERARALYRSGGSVsylDVLLGSESfsDFLDRlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 337 LDELAMETLQEKSQHKEELgavrlrheKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQ 416
Cdd:COG3883 166 LEAAKAELEAQQAEQEALL--------AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAA 237
|
....*....
gi 569008870 417 AQVHSMDGA 425
Cdd:COG3883 238 AAAAAAASA 246
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
181-499 |
5.46e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 181 QTEKETLFNDSRNKIEELQQRKEADL-----KAQLARTQ--KLQQELE-----AANQS------LAELRDQRQGERLEHA 242
Cdd:pfam15921 255 QNKIELLLQQHQDRIEQLISEHEVEItglteKASSARSQanSIQSQLEiiqeqARNQNsmymrqLSDLESTVSQLRSELR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 243 AALRALQDQIQTaktqelnmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLranSRLLEQLQEIGQEKEQ---- 318
Cdd:pfam15921 335 EAKRMYEDKIEE--------LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL---ADLHKREKELSLEKEQnkrl 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 319 LTQDLQEARKSAEKRKvMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYE--RELRELHEDKKRQEEELRGQIR 396
Cdd:pfam15921 404 WDRDTGNSITIDHLRR-ELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNEslEKVSSLTAQLESTKEMLRKVVE 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 397 EEKARTRELENLQHTVEELQAQVHsmdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHaaeLKGKDEELQNVREQL 476
Cdd:pfam15921 483 ELTAKKMTLESSERTVSDLTASLQ---------EKERAIEATNAEITKLRSRVDLKLQELQH---LKNEGDHLRNVQTEC 550
|
330 340
....*....|....*....|...
gi 569008870 477 QQAQEERDGHVKTISNLKQEVKD 499
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIEN 573
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
200-639 |
5.61e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 43.58 E-value: 5.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 200 QRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQ--DQIQTAKTQELNMLREQTSELASELQHR 277
Cdd:pfam05557 33 EKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKkyLEALNKKLNEKESQLADAREVISCLKNE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 278 QAEYE-ELMGQKDDLNSQLQESLRANSRLlEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMEtLQEKSQHKEELG 356
Cdd:pfam05557 113 LSELRrQIQRAELELQSTNSELEELQERL-DLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFE-IQSQEQDSEIVK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 357 AVRLRhekelLGVRARYERELRELHEDKKRqeeelrgqireekartreLENLQHTVEELQAQVHSMdgakgwfERRLKEA 436
Cdd:pfam05557 191 NSKSE-----LARIPELEKELERLREHNKH------------------LNENIENKLLLKEEVEDL-------KRKLERE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 437 EESLQQQQQEQEETLKLCREEHAAELKGKDEEL-----QNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKG 511
Cdd:pfam05557 241 EKYREEAATLELEKEKLEQELQSWVKLAQDTGLnlrspEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQEL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 512 SAVLKDLKrQLHLERKRADKLQERLQ-EILTNSKSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSYREILKE-------- 582
Cdd:pfam05557 321 AQYLKKIE-DLNKKLKRHKALVRRLQrRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQKmqahneem 399
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008870 583 --------------KESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVS 639
Cdd:pfam05557 400 eaqlsvaeeelggyKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEME 470
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
141-392 |
5.61e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 5.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 141 AEVELKWEMEREEKKLLWEQLQGLELSEKLKKKqesfcRLQTEKETLFNDSRNKIEELQQRKEADLKA-QLARTQKLQQE 219
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA-----RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAeELKKAEEEKKK 1634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 220 LEAANQSLAElrDQRQGERLEHAAALRALQDQIQTAKTQElnmlREQTSELASELQHRQAEYEELMGQKDDLNSQLQESL 299
Cdd:PTZ00121 1635 VEQLKKKEAE--EKKKAEELKKAEEENKIKAAEEAKKAEE----DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 300 RANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKS----QHKEELGAVRLRHEKEllgvrARYER 375
Cdd:PTZ00121 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKiahlKKEEEKKAEEIRKEKE-----AVIEE 1783
|
250
....*....|....*..
gi 569008870 376 ELRElhEDKKRQEEELR 392
Cdd:PTZ00121 1784 ELDE--EDEKRRMEVDK 1798
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
179-332 |
6.22e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 6.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 179 RLQTEKETLfNDSRNKIEELQQRK-----EADLKAQLARTQKLQQELEAANQSLAELRDQ----RQGERLEHAAALRALQ 249
Cdd:COG3206 183 QLPELRKEL-EEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARlaalRAQLGSGPDALPELLQ 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 250 DQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLE-QLQEIGQEKEQLTQDLQEARK 328
Cdd:COG3206 262 SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEaELEALQAREASLQAQLAQLEA 341
|
....
gi 569008870 329 SAEK 332
Cdd:COG3206 342 RLAE 345
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
8-394 |
6.38e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 6.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 8 EEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQK----LCSQLEQLELENRQLKEGVPGAAGAH 83
Cdd:PRK02224 349 EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRErfgdAPVDLGNAEDFLEELREERDELRERE 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 84 VDGELLRLQAENtALQKNMAALQEryGK-----EAVRPSAVGEGQGDPPGDV--LPTPLAPMPLAEVELKWEMEREEKkl 156
Cdd:PRK02224 429 AELEATLRTARE-RVEEAEALLEA--GKcpecgQPVEGSPHVETIEEDRERVeeLEAELEDLEEEVEEVEERLERAED-- 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 157 LWEQLQGLelsEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRK---EADLKAQLARTQKLQQELEAANQSLAELRDQ 233
Cdd:PRK02224 504 LVEAEDRI---ERLEERREDLEELIAERRETIEEKRERAEELRERAaelEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 234 RQ--GERLEHAAALRALQDQIqTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRllEQLQE 311
Cdd:PRK02224 581 LAelKERIESLERIRTLLAAI-ADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAR--EDKER 657
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 312 IGQEKEQLTQDLQEARksaEKRKVMLDELAM--ETLQEKSQHKEELGAVRLRHEKellgVRARYErELRELHEDKKRQEE 389
Cdd:PRK02224 658 AEEYLEQVEEKLDELR---EERDDLQAEIGAveNELEELEELRERREALENRVEA----LEALYD-EAEELESMYGDLRA 729
|
....*
gi 569008870 390 ELRGQ 394
Cdd:PRK02224 730 ELRQR 734
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
261-551 |
6.67e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 6.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 261 NMLRE-QTSELASELQhrqAEYEELMGQKDDLnsqlqESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDE 339
Cdd:COG4913 216 YMLEEpDTFEAADALV---EHFDDLERAHEAL-----EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 340 LAMETLQEKSQhkeelgavRLRHEKELLGVRaryERELRELHEDKKRQEEELRGQIREEKarTRELENLQHTVEELQAQV 419
Cdd:COG4913 288 RRLELLEAELE--------ELRAELARLEAE---LERLEARLDALREELDELEAQIRGNG--GDRLEQLEREIERLEREL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 420 hsmdgakgwfERRLKEaeeslqqqqqeqeetlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKD 499
Cdd:COG4913 355 ----------EERERR-------------------RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 569008870 500 TVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEE 551
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDE 457
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
190-534 |
7.45e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 7.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 190 DSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLaelrdQRQgerlehAAALRALQDQIQTAkTQELNMLREQTSE 269
Cdd:pfam05483 268 DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSL-----QRS------MSTQKALEEDLQIA-TKTICQLTEEKEA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 270 LASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLE----QLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAM--- 342
Cdd:pfam05483 336 QMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEknedQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKila 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 343 --ETLQEKSQHKEELGAVRLRHEKELLGVRARYERELREL----------HEDKKRQEEELRGQIREEKARTRELENlqh 410
Cdd:pfam05483 416 edEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLeiqltaiktsEEHYLKEVEDLKTELEKEKLKNIELTA--- 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 411 TVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDeELQNVREQLQQAQEERDGHVKTI 490
Cdd:pfam05483 493 HCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRD-ELESVREEFIQKGDEVKCKLDKS 571
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 569008870 491 SNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQE 534
Cdd:pfam05483 572 EENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQ 615
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
190-495 |
8.85e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 8.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 190 DSRNKIEELQQRKE---ADLKAQLARTQKLQQELEAANQSLAELRD-QRQGERLEH-AAALRALqdqiqTAKTQELNMLR 264
Cdd:COG3096 296 GARRQLAEEQYRLVemaRELEELSARESDLEQDYQAASDHLNLVQTaLRQQEKIERyQEDLEEL-----TERLEEQEEVV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 265 EqtsELASELQHRQAEYEELMGQKDDLNSQLQESLRAnsrlLEQLQEIGQEKEQLTQDLQEARKSAEkrkvmLDELAMET 344
Cdd:COG3096 371 E---EAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA----LDVQQTRAIQYQQAVQALEKARALCG-----LPDLTPEN 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 345 L---QEKSQHKEELGAVRLRHEKELLGV----RARYERELREL--------HEDKKRQEEELRGQIREEKARTRELENLQ 409
Cdd:COG3096 439 AedyLAAFRAKEQQATEEVLELEQKLSVadaaRRQFEKAYELVckiageveRSQAWQTARELLRRYRSQQALAQRLQQLR 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 410 HTVEELQAQVHSMDGAkgwfeRRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKT 489
Cdd:COG3096 519 AQLAELEQRLRQQQNA-----ERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRAR 593
|
....*.
gi 569008870 490 ISNLKQ 495
Cdd:COG3096 594 IKELAA 599
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
190-482 |
9.69e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 9.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 190 DSRNKIEELQQRKEA---DLKAQLARTQKLQQELEAANQSLA----ELRDQRQGERLEhaAALRALqdqiqTAKTQELNM 262
Cdd:PRK04863 297 TSRRQLAAEQYRLVEmarELAELNEAESDLEQDYQAASDHLNlvqtALRQQEKIERYQ--ADLEEL-----EERLEEQNE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 263 LREQTSELASELQHRQAEYEElmgQKDDLNSQLQESLRAnsrlLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELam 342
Cdd:PRK04863 370 VVEEADEQQEENEARAEAAEE---EVDELKSQLADYQQA----LDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNA-- 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 343 ETLQEKSQHKEELGAVRLRHEKELLGV----RARYERELRELH--------EDKKRQEEELRGQIREEKARTRELENLQH 410
Cdd:PRK04863 441 EDWLEEFQAKEQEATEELLSLEQKLSVaqaaHSQFEQAYQLVRkiagevsrSEAWDVARELLRRLREQRHLAEQLQQLRM 520
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 569008870 411 TVEELQAQVHSMDGAkgwfeRRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQ---LQQAQEE 482
Cdd:PRK04863 521 RLSELEQRLRQQQRA-----ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERrmaLRQQLEQ 590
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
168-546 |
1.03e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 168 EKLKKKQESFCRLQTEkETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSL-------AELRDQRQGERLE 240
Cdd:pfam12128 478 EEQEAANAEVERLQSE-LRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLlhflrkeAPDWEQSIGKVIS 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 241 HAAALRALQDQIQTAKT--QELNM----LREQTSELASELQHRQAEYEELmgqkDDLNSQLQESLRANSRLLEQLQEIGQ 314
Cdd:pfam12128 557 PELLHRTDLDPEVWDGSvgGELNLygvkLDLKRIDVPEWAASEEELRERL----DKAEEALQSAREKQAAAEEQLVQANG 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 315 EKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVraryERELRELHEDKKRQEEELRGQ 394
Cdd:pfam12128 633 ELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSL----EAQLKQLDKKHQAWLEEQKEQ 708
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 395 IREekARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAeeslqqqqqeqeetLKLCREEHAAELKGKDEELQNV-- 472
Cdd:pfam12128 709 KRE--ARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAE--------------LKALETWYKRDLASLGVDPDVIak 772
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 473 ----REQLQQ--AQEERDGHVKTI-------------SNLKQEVKDTVDGQRILEKKGSAVLKDLKR---QLHLERKRAD 530
Cdd:pfam12128 773 lkreIRTLERkiERIAVRRQEVLRyfdwyqetwlqrrPRLATQLSNIERAISELQQQLARLIADTKLrraKLEMERKASE 852
|
410
....*....|....*.
gi 569008870 531 KLQERLQEILTNSKSR 546
Cdd:pfam12128 853 KQQVRLSENLRGLRCE 868
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
165-350 |
1.12e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 165 ELSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRD---------QRQ 235
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDAL-QAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREelgeraralYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 236 GERLEHAAAL---RALQDQIQTAKTqeLNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEI 312
Cdd:COG3883 99 GGSVSYLDVLlgsESFSDFLDRLSA--LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190
....*....|....*....|....*....|....*...
gi 569008870 313 GQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQ 350
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
194-641 |
1.40e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 194 KIEELQQRKEADlKAQLARTQKLQQELEAANQSlaelRDQRQGERLEHAAALRALQDQIQTAKTQELNM-LREQTSELAS 272
Cdd:PTZ00121 1189 KAEELRKAEDAR-KAEAARKAEEERKAEEARKA----EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEeIRKFEEARMA 1263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 273 ELQHRQAEYEELMGQKDDLNSQLQESLRANSrlLEQLQEIgQEKEQLTQDLQEARKSAE-KRKVMLDELAMETLQEKSQH 351
Cdd:PTZ00121 1264 HFARRQAAIKAEEARKADELKKAEEKKKADE--AKKAEEK-KKADEAKKKAEEAKKADEaKKKAEEAKKKADAAKKKAEE 1340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 352 KEELGAVRlRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKgwfER 431
Cdd:PTZ00121 1341 AKKAAEAA-KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAA---AA 1416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 432 RLKEAEESLQQQQQEQEETLKLCREE--HAAELKGKDEELQNVREQLQQAQEERDG--------HVKTISNLKQEVKDTV 501
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEAKKKAEEakKADEAKKKAEEAKKAEEAKKKAEEAKKAdeakkkaeEAKKADEAKKKAEEAK 1496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 502 DGQRILEKKGSAVLKDLKRQLHLERKRADKLQeRLQEILTNSKSRTGLEELVLSEMNSPSRTQTGDSSSVSSfsyrEILK 581
Cdd:PTZ00121 1497 KKADEAKKAAEAKKKADEAKKAEEAKKADEAK-KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE----EAKK 1571
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 582 EKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKwmlEEKVKHLEVSSA 641
Cdd:PTZ00121 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAE---EAKIKAEELKKA 1628
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
145-422 |
1.40e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 145 LKWEMEREEKKLLWEQLQGL-----ELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQE 219
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLhfgykSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 220 LEAANQSLAELRDqrqgERLEHAAALRALQDQIQTaktqELNMLREQTSELASELQHRQAEYE------------ELMGQ 287
Cdd:pfam12128 324 LEALEDQHGAFLD----ADIETAAADQEQLPSWQS----ELENLEERLKALTGKHQDVTAKYNrrrskikeqnnrDIAGI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 288 KDDLNSQLQESLRANSRLLEQLQEIGQE-KEQLTQDLQEARKSAEKRKVMLDELAM---------ETLQEKSQHKEELGA 357
Cdd:pfam12128 396 KDKLAKIREARDRQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLKSRLGELKLrlnqatatpELLLQLENFDERIER 475
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 569008870 358 VRLRHEKEllgvRARYERELRELHEDKKRQEEELRgQIREEKARTRELEN-LQHTVEELQAQVHSM 422
Cdd:pfam12128 476 AREEQEAA----NAEVERLQSELRQARKRRDQASE-ALRQASRRLEERQSaLDELELQLFPQAGTL 536
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
145-365 |
1.44e-03 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 41.59 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 145 LKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFnDSRNKIEELQQRKEADLKAQLA-----RTQKLQQE 219
Cdd:pfam15742 81 LTAEWKHCQQKIRELELEVLKQAQSIKSQNSLQEKLAQEKSRVA-DAEEKILELQQKLEHAHKVCLTdtcilEKKQLEER 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 220 LEAANQSLAELRDQRQGERLEhaaalRALQDQIQTAKTQELNMLREQTSELA---SELQHRQAEYEELMGQKDDLNSQLQ 296
Cdd:pfam15742 160 IKEASENEAKLKQQYQEEQQK-----RKLLDQNVNELQQQVRSLQDKEAQLEmtnSQQQLRIQQQEAQLKQLENEKRKSD 234
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569008870 297 ESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSaekrkvmLDELAMETLQEKSQHKEELGAVRLRHEKE 365
Cdd:pfam15742 235 EHLKSNQELSEKLSSLQQEKEALQEELQQVLKQ-------LDVHVRKYNEKHHHHKAKLRRAKDRLVHE 296
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
164-419 |
1.61e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 164 LELSEKLKKKQESFCRLQTEKEtlfnDSRNKIEELQQRKEaDLKAQLARTQK---LQQ----ELEAANQSLAELRDQRQG 236
Cdd:PRK04863 358 EELEERLEEQNEVVEEADEQQE----ENEARAEAAEEEVD-ELKSQLADYQQaldVQQtraiQYQQAVQALERAKQLCGL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 237 ERLEHAAA---LRALQDQIQTAkTQELNMLrEQTSELASEL--QHRQAeYEELMGQKDDLN-SQLQESLRANSRLLEQLQ 310
Cdd:PRK04863 433 PDLTADNAedwLEEFQAKEQEA-TEELLSL-EQKLSVAQAAhsQFEQA-YQLVRKIAGEVSrSEAWDVARELLRRLREQR 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 311 EIGQEKEQLTQDLQEARKSAEKRKV---MLDELAMEtLQEKSQHKEELGAVRLRHEKELLGVRArYERELRELHEDKKRQ 387
Cdd:PRK04863 510 HLAEQLQQLRMRLSELEQRLRQQQRaerLLAEFCKR-LGKNLDDEDELEQLQEELEARLESLSE-SVSEARERRMALRQQ 587
|
250 260 270
....*....|....*....|....*....|..
gi 569008870 388 EEELRGQIREEKARTRELENLQHTVEELQAQV 419
Cdd:PRK04863 588 LEQLQARIQRLAARAPAWLAAQDALARLREQS 619
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
143-410 |
1.70e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 143 VELKWEMEREEKKLlwEQLQGLELSEKLKKKQESfcrlqTEKETLFNDSRnKIEELQQRKEADLKAQLARTQKLQQELEA 222
Cdd:COG5022 832 LRETEEVEFSLKAE--VLIQKFGRSLKAKKRFSL-----LKKETIYLQSA-QRVELAERQLQELKIDVKSISSLKLVNLE 903
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 223 ANQSLAELRDQRQGE-------RLEHAAALRALQDQIQTA--------KTQELNMLREQTSELASELQHRQAEYEELMGQ 287
Cdd:COG5022 904 LESEIIELKKSLSSDlienlefKTELIARLKKLLNNIDLEegpsieyvKLPELNKLHEVESKLKETSEEYEDLLKKSTIL 983
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 288 KDDLNSQLQESLRANSRLLEQLQEIGqekeqltqDLQEARKSAEKRKVMLDELAMETLQEKSQHKE-----ELGAVRLRH 362
Cdd:COG5022 984 VREGNKANSELKNFKKELAELSKQYG--------ALQESTKQLKELPVEVAELQSASKIISSESTElsilkPLQKLKGLL 1055
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 569008870 363 EKELLGVRARYE-----RELRELHEDKKRQEEELRGQIREEKARTRELENLQH 410
Cdd:COG5022 1056 LLENNQLQARYKalklrRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNL 1108
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
191-339 |
2.08e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.86 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 191 SRNKIEELQQRKEADLKAQLARTQKLQQEL------------EAANQSLAELRDQRQGERLEHAAA---LRALQDQ---- 251
Cdd:PRK11448 51 ALLGIYEPPCENQHDLLRRLGKEGFLPDEIldvfhklrkignKAVHEFHGDHREALMGLKLAFRLAvwfHRTYGKDwdfk 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 252 ------------IQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQL 319
Cdd:PRK11448 131 pgpfvppedpenLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210
|
170 180
....*....|....*....|...
gi 569008870 320 TQDLQEARKSAEKR---KVMLDE 339
Cdd:PRK11448 211 SQERKQKRKEITDQaakRLELSE 233
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
148-414 |
2.14e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 148 EMEREEKKLLWEQLQGlelSEKLKKKQEsfcrLQTEKETLFNDSRNKIEElQQRKEADLKAQLARTQKLQQELEAANQSL 227
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKK---AEEKKKADE----LKKAEELKKAEEKKKAEE-AKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 228 AELRDQRQGERLEHA-----AALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRAN 302
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAkkaeeAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 303 SRLLEQLQEIGQEKEQLTQDLQEARKSAEKRkvmldelametlqeKSQHKEELGAVRLRHEKELLGVRAryeRELRELHE 382
Cdd:PTZ00121 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELK--------------KKEAEEKKKAEELKKAEEENKIKA---EEAKKEAE 1740
|
250 260 270
....*....|....*....|....*....|..
gi 569008870 383 DKKRQEEELRGQiREEKARTRELENLQHTVEE 414
Cdd:PTZ00121 1741 EDKKKAEEAKKD-EEEKKKIAHLKKEEEKKAE 1771
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
165-537 |
2.20e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 165 ELSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKEaDLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEH 241
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAreaVEDRREEIEELEEEIE-ELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 242 AAALRALQDQIQTAKTqelnmLRE-----------QTSELASELQHRQAEYEELMGQKDDLNSQlQESLRANSRLLEQLQ 310
Cdd:PRK02224 432 EATLRTARERVEEAEA-----LLEagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEE-VEEVEERLERAEDLV 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 311 EIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRqeee 390
Cdd:PRK02224 506 EAEDRIERLEERREDLEELIAERRETIEEKR-ERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK---- 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 391 lRGQIREEKARTRELENLQHTVEELQAQVhsmdgakgwfeRRLKEAEESLQQQQQEQEETLKLCREEH---AAELKGKD- 466
Cdd:PRK02224 581 -LAELKERIESLERIRTLLAAIADAEDEI-----------ERLREKREALAELNDERRERLAEKRERKrelEAEFDEARi 648
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008870 467 EELQNVREQLQQAQEERDGHVKTisnlKQEVKDTvdgqriLEKKGSAVLKDLKRQLHLeRKRADKLQERLQ 537
Cdd:PRK02224 649 EEAREDKERAEEYLEQVEEKLDE----LREERDD------LQAEIGAVENELEELEEL-RERREALENRVE 708
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
163-232 |
2.70e-03 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 41.24 E-value: 2.70e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 569008870 163 GLELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQ------QRKEADLKAQLARTQKLQQELEAANQSLAELRD 232
Cdd:PRK06975 341 GYALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQasvhqlDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRD 416
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
140-513 |
3.06e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 140 LAEVELKWEMEREEKKLLWEQLQGL--------ELSEKLKKKQESFCRLQtEKETLFNDSRNKIEELQQRK--------- 202
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIKELeekeerleELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKkrltgltpe 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 203 --EADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLEHAAALRALQDQIQTAKTQ-----ELNMLREQTSELA---S 272
Cdd:PRK03918 388 klEKELEELEKAKEEIEEEISKITARIGELK-KEIKELKKAIEELKKAKGKCPVCGRElteehRKELLEEYTAELKrieK 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 273 ELQHRQAEYEELMGQKDDLNSQL--QESLRANSRLLEQLQEIGQE-KEQLTQDLQEARKSAEKRKVMLDELAME--TLQE 347
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLkkESELIKLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEikSLKK 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 348 KSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIRE--------------EKARTRELENLQHTVE 413
Cdd:PRK03918 547 ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKElepfyneylelkdaEKELEREEKELKKLEE 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 414 ELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQeerdghvKTISNL 493
Cdd:PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK-------KTLEKL 699
|
410 420
....*....|....*....|
gi 569008870 494 KQEVKDTVDGQRILEKKGSA 513
Cdd:PRK03918 700 KEELEEREKAKKELEKLEKA 719
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
166-311 |
5.14e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 166 LSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKeADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHA 242
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELadlLSLERQGNQDLQDSV-ANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELA 122
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 569008870 243 AALRALQDQIQTAKTQ------ELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLqeslraNSRLLEQLQE 311
Cdd:PRK09039 123 QELDSEKQVSARALAQvellnqQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL------NVALAQRVQE 191
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
159-381 |
5.18e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 159 EQLQGLELSEKLKKKQesfcrLQTEKEtLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELrDQRQGER 238
Cdd:PHA02562 181 QQIQTLDMKIDHIQQQ-----IKTYNK-NIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL-VMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 239 LEHAAALR----ALQDQIQTAK---------------TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESL 299
Cdd:PHA02562 254 SAALNKLNtaaaKIKSKIEQFQkvikmyekggvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 300 RANSRLLEQLQEIGQEKeqltQDLQEARKSAEKRKVMLDELAMETLqeksQHKEELGAVRlRHEKELLGVRARYERELRE 379
Cdd:PHA02562 334 EQSKKLLELKNKISTNK----QSLITLVDKAKKVKAAIEELQAEFV----DNAEELAKLQ-DELDKIVKTKSELVKEKYH 404
|
..
gi 569008870 380 LH 381
Cdd:PHA02562 405 RG 406
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
7-421 |
5.54e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 5.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKeFSKAQKLCSQLEQLELENRQLKEGVPgaagahvdg 86
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPL-YQELEALEAELAELPERLEELEERLE--------- 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 87 ELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEGQGDPPGDVLPTPLAPMPLAEVELKWEME-----REEKKLLWEQL 161
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEeleelEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 162 QGLELSEKLKKKQESF------CRLQTEKETLFNDSRNKIE-------------ELQQRKEADLKAQLARTQKLQQELEA 222
Cdd:COG4717 237 EAAALEERLKEARLLLliaaalLALLGLGGSLLSLILTIAGvlflvlgllallfLLLAREKASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 223 ANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDlnsqlqESLRAN 302
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDE------EELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 303 SRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMET-LQEKSQHKEELGAVRLRHEKELLGVRARYER-ELREL 380
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEeLEELEEELEELEEELEELREELAELEAELEQlEEDGE 470
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 569008870 381 HEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHS 421
Cdd:COG4717 471 LAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
149-331 |
5.88e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 149 MEREEKKLLWEQLQGLEL--SEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEAdLKAQLA--RTQKLQQELEAAN 224
Cdd:pfam17380 407 LEEERQRKIQQQKVEMEQirAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVER-LRQQEEerKRKKLELEKEKRD 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 225 QSLAELRDQRQGERlEHAAALRALQDQIQTAKTQELNMLREQTSeLASELQHRQAEYEELMGQKDDLNSQLQESLRANSR 304
Cdd:pfam17380 486 RKRAEEQRRKILEK-ELEERKQAMIEEERKRKLLEKEMEERQKA-IYEEERRREAEEERRKQQEMEERRRIQEQMRKATE 563
|
170 180
....*....|....*....|....*..
gi 569008870 305 LLEQLQEIGQEKEQLTQDLQEARKSAE 331
Cdd:pfam17380 564 ERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
152-340 |
5.95e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.21 E-value: 5.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 152 EEKKLLWEQLQGLELSEK-LKKKQESFcrLQTEKETlFNDSRNKIEELQQRKEADLKAQLARtqkLQQELEAANQSLAEL 230
Cdd:pfam12128 675 ERKDSANERLNSLEAQLKqLDKKHQAW--LEEQKEQ-KREARTEKQAYWQVVEGALDAQLAL---LKAAIAARRSGAKAE 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 231 RDQRQGERLEHAAALRALQDQIQTAKTQELNMlrEQTSELASELQHRQAEYEELMG-----QKDDLNSQLQESLRANSRL 305
Cdd:pfam12128 749 LKALETWYKRDLASLGVDPDVIAKLKREIRTL--ERKIERIAVRRQEVLRYFDWYQetwlqRRPRLATQLSNIERAISEL 826
|
170 180 190
....*....|....*....|....*....|....*
gi 569008870 306 LEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL 340
Cdd:pfam12128 827 QQQLARLIADTKLRRAKLEMERKASEKQQVRLSEN 861
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
183-530 |
9.51e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.12 E-value: 9.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 183 EKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEhaaaLRALQDQIQTAKtQELNM 262
Cdd:COG4372 10 KARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEE----LEQARSELEQLE-EELEE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 263 LREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAm 342
Cdd:COG4372 85 LNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQ- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 343 ETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSM 422
Cdd:COG4372 164 EELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008870 423 DGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVD 502
Cdd:COG4372 244 LEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLE 323
|
330 340
....*....|....*....|....*...
gi 569008870 503 GQRILEKKGSAVLKDLKRQLHLERKRAD 530
Cdd:COG4372 324 LAKKLELALAILLAELADLLQLLLVGLL 351
|
|
| |
