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Conserved domains on  [gi|569007176|ref|XP_006527114|]
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attractin-like protein 1 isoform X5 [Mus musculus]

Protein Classification

attractin-like protein 1( domain architecture ID 18860411)

attractin-like protein 1 (ATRNL1) may play a role in melanocortin signaling pathways that regulate energy homeostasis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CLECT_attractin_like cd03597
C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and ...
 747-873 1.10e-79

C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP); CLECT_attractin_like: C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Mouse AtrN (the product of the mahogany gene) has been shown to bind Agouti protein and to function in agouti-induced pigmentation and obesity. Mutations in AtrN have also been shown to cause spongiform encephalopathy and hypomyelination in rats and hamsters. The cytoplasmic region of mouse ALP has been shown to binds to melanocortin receptor (MCR4). Signaling through MCR4 plays a role in appetite suppression. Attractin may have therapeutic potential in the treatment of obesity. Human attractin (hAtrN) has been shown to be expressed on activated T cells and released extracellularly. The circulating serum attractin induces the spreading of monocytes that become the focus of the clustering of non-proliferating T cells.


:

Pssm-ID: 153067  Cd Length: 129  Bit Score: 257.13  E-value: 1.10e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  747 CGEGWNHVGDACLRINSSRESYDNAKLYCYNLSGNLASLTTSKEVEFVLDEIQK--FTQQKVSPWVGLRKINISYWGWED 824
Cdd:cd03597     1 CGEGWHLVGNSCLKINTARESYDNAKLYCRNLNAVLASLTTQKKVEFVLKELQKhqMTKQKLTPWVGLRKINVSYWCWED 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 569007176  825 MSPFTNTSLQWLPGEPNDSGFCAYLERAAVAGLKANPCTSMADGLVCEK 873
Cdd:cd03597    81 MSPFTNTTLQWLPGEPSDAGFCGYLEEPAVSGLKANPCTNPVNGSVCER 129
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
302-597 1.07e-22

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 99.46  E-value: 1.07e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  302 VGRASHKAVLHGKFMWVIGGYTFN--YSSFQMvlnYNLESSIWNVGAvsRGPLQRYGHS-LALYQENIFMYGGRMETSD- 377
Cdd:COG3055    11 TPRSEAAAALLDGKVYVAGGLSGGsaSNSFEV---YDPATNTWSELA--PLPGPPRHHAaAVAQDGKLYVFGGFTGANPs 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  378 GNVTDELWVFNVRSQSWSTKTPtvlghsqqyAVEGHSAHIMELDSRDVvmIVIFGYSAiYGYTSSIQEYHISSNTWlvpE 457
Cdd:COG3055    86 STPLNDVYVYDPATNTWTKLAP---------MPTPRGGATALLLDGKI--YVVGGWDD-GGNVAWVEVYDPATGTW---T 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  458 TKGAIVQGGYGHTSVYDEVTKsIYVHGGYKalpgnkyglvddlykYEVNTRTWTILKESGFARYLHSAVLINGAMLIFGG 537
Cdd:COG3055   151 QLAPLPTPRDHLAAAVLPDGK-ILVIGGRN---------------GSGFSNTWTTLAPLPTARAGHAAAVLGGKILVFGG 214

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  538 NTHndtslsngakcFSADFLAYDIACDEWKTLPKPNlhrdVNRFGHSAVVINGSMYIFGG 597
Cdd:COG3055   215 ESG-----------FSDEVEAYDPATNTWTALGELP----TPRHGHAAVLTDGKVYVIGG 259
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 92-207 2.47e-16

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 75.91  E-value: 2.47e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176   92 CQGRFKLTePSGYLT--DGPINYKYKTKCTWLIEGYPNAVLRLRFNHFATE----CSWDHMYVYDGDSIYAPLVAVLSGl 165
Cdd:cd00041     1 CGGTLTAS-TSGTISspNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspnCSYDYLEIYDGPSTSSPLLGRFCG- 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 569007176  166 ivpevrgNETVPEVVTTSGYALLHFFSDAAYNLTGFNIFYSI 207
Cdd:cd00041    79 -------STLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
EGF_Lam cd00055
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ...
 1012-1057 1.05e-07

Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies


:

Pssm-ID: 238012  Cd Length: 50  Bit Score: 49.27  E-value: 1.05e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 569007176 1012 ACQCNGHSTciNNNVCEQ------CKNLTTGRQCQECMPGYYGDPTNGGQCT 1057
Cdd:cd00055     1 PCDCNGHGS--LSGQCDPgtgqceCKPNTTGRRCDRCAPGYYGLPSQGGGCQ 50
PSI pfam01437
Plexin repeat; A cysteine rich repeat found in several different extracellular receptors. The ...
 888-937 9.22e-06

Plexin repeat; A cysteine rich repeat found in several different extracellular receptors. The function of the repeat is unknown. Three copies of the repeat are found Plexin. Two copies of the repeat are found in mahogany protein. A related C. elegans protein contains four copies of the repeat. The Met receptor contains a single copy of the repeat. The Pfam alignment shows 6 conserved cysteine residues that may form three conserved disulphide bridges, whereas some members show 8 conserved cysteines. The pattern of conservation suggests that cysteines 5 and 7 (that are not absolutely conserved) form a disulphide bridge (Personal observation. A Bateman).


:

Pssm-ID: 396154 [Multi-domain]  Cd Length: 52  Bit Score: 44.24  E-value: 9.22e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 569007176   888 PCSLRTSCANCTSSG-MECMWCSSTKRCVDSNAYiiSFPYGQCLEWQTATC 937
Cdd:pfam01437    1 RCSQYTSCSSCLAARdPYCGWCSSEGRCVRRSAC--GAPEGNCEEWEQASS 49
DSL super family cl19567
Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain ...
 234-280 4.49e-03

Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain defined by structure.


The actual alignment was detected with superfamily member pfam01414:

Pssm-ID: 473190  Cd Length: 46  Bit Score: 36.06  E-value: 4.49e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 569007176   234 CDKYWKGEACDIpYCKANCGSPDHGYCDLTGEKlcVCNDSWQGPDCS 280
Cdd:pfam01414    1 CDENYYGSTCSK-FCRPRDDKFGHYTCDANGNK--VCLPGWTGPYCD 44
 
Name Accession Description Interval E-value
CLECT_attractin_like cd03597
C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and ...
 747-873 1.10e-79

C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP); CLECT_attractin_like: C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Mouse AtrN (the product of the mahogany gene) has been shown to bind Agouti protein and to function in agouti-induced pigmentation and obesity. Mutations in AtrN have also been shown to cause spongiform encephalopathy and hypomyelination in rats and hamsters. The cytoplasmic region of mouse ALP has been shown to binds to melanocortin receptor (MCR4). Signaling through MCR4 plays a role in appetite suppression. Attractin may have therapeutic potential in the treatment of obesity. Human attractin (hAtrN) has been shown to be expressed on activated T cells and released extracellularly. The circulating serum attractin induces the spreading of monocytes that become the focus of the clustering of non-proliferating T cells.


Pssm-ID: 153067  Cd Length: 129  Bit Score: 257.13  E-value: 1.10e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  747 CGEGWNHVGDACLRINSSRESYDNAKLYCYNLSGNLASLTTSKEVEFVLDEIQK--FTQQKVSPWVGLRKINISYWGWED 824
Cdd:cd03597     1 CGEGWHLVGNSCLKINTARESYDNAKLYCRNLNAVLASLTTQKKVEFVLKELQKhqMTKQKLTPWVGLRKINVSYWCWED 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 569007176  825 MSPFTNTSLQWLPGEPNDSGFCAYLERAAVAGLKANPCTSMADGLVCEK 873
Cdd:cd03597    81 MSPFTNTTLQWLPGEPSDAGFCGYLEEPAVSGLKANPCTNPVNGSVCER 129
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
302-597 1.07e-22

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 99.46  E-value: 1.07e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  302 VGRASHKAVLHGKFMWVIGGYTFN--YSSFQMvlnYNLESSIWNVGAvsRGPLQRYGHS-LALYQENIFMYGGRMETSD- 377
Cdd:COG3055    11 TPRSEAAAALLDGKVYVAGGLSGGsaSNSFEV---YDPATNTWSELA--PLPGPPRHHAaAVAQDGKLYVFGGFTGANPs 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  378 GNVTDELWVFNVRSQSWSTKTPtvlghsqqyAVEGHSAHIMELDSRDVvmIVIFGYSAiYGYTSSIQEYHISSNTWlvpE 457
Cdd:COG3055    86 STPLNDVYVYDPATNTWTKLAP---------MPTPRGGATALLLDGKI--YVVGGWDD-GGNVAWVEVYDPATGTW---T 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  458 TKGAIVQGGYGHTSVYDEVTKsIYVHGGYKalpgnkyglvddlykYEVNTRTWTILKESGFARYLHSAVLINGAMLIFGG 537
Cdd:COG3055   151 QLAPLPTPRDHLAAAVLPDGK-ILVIGGRN---------------GSGFSNTWTTLAPLPTARAGHAAAVLGGKILVFGG 214

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  538 NTHndtslsngakcFSADFLAYDIACDEWKTLPKPNlhrdVNRFGHSAVVINGSMYIFGG 597
Cdd:COG3055   215 ESG-----------FSDEVEAYDPATNTWTALGELP----TPRHGHAAVLTDGKVYVIGG 259
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 92-207 2.47e-16

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 75.91  E-value: 2.47e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176   92 CQGRFKLTePSGYLT--DGPINYKYKTKCTWLIEGYPNAVLRLRFNHFATE----CSWDHMYVYDGDSIYAPLVAVLSGl 165
Cdd:cd00041     1 CGGTLTAS-TSGTISspNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspnCSYDYLEIYDGPSTSSPLLGRFCG- 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 569007176  166 ivpevrgNETVPEVVTTSGYALLHFFSDAAYNLTGFNIFYSI 207
Cdd:cd00041    79 -------STLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
Lectin_C pfam00059
Lectin C-type domain; This family includes both long and short form C-type
 765-873 6.09e-14

Lectin C-type domain; This family includes both long and short form C-type


Pssm-ID: 459655 [Multi-domain]  Cd Length: 105  Bit Score: 69.04  E-value: 6.09e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176   765 RESYDNAKLYCYNLSGNLASLTTSKEVEFVLDEIqkfTQQKVSPWVGLRKINIS-YWGWEDMSPFTNTSLQWLPGEPNDS 843
Cdd:pfam00059    1 SKTWDEAREACRKLGGHLVSINSAEELDFLSSTL---KKSNKYFWIGLTDRKNEgTWKWVDGSPVNYTNWAPEPNNNGEN 77

                           90       100       110
                   ....*....|....*....|....*....|
gi 569007176   844 GFCAYLERAAvAGLKANPCTSMAdGLVCEK 873
Cdd:pfam00059   78 EDCVELSSSS-GKWNDENCNSKN-PFVCEK 105
CLECT smart00034
C-type lectin (CTL) or carbohydrate-recognition domain (CRD); Many of these domains function ...
 747-849 1.41e-13

C-type lectin (CTL) or carbohydrate-recognition domain (CRD); Many of these domains function as calcium-dependent carbohydrate binding modules.


Pssm-ID: 214480 [Multi-domain]  Cd Length: 124  Bit Score: 68.78  E-value: 1.41e-13
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176    747 CGEGWNHVGDACLRINSSRESYDNAKLYCYNLSGNLASLTTSKEVEFVLDEIQKFTQQKvSPWVGLRKINISY-WGWEDM 825
Cdd:smart00034    1 CPSGWISYGGKCYKFSTEKKTWEDAQAFCQSLGGHLASIHSEAENDFVASLLKNSGSSD-YYWIGLSDPDSNGsWQWSDG 79

                            90       100
                    ....*....|....*....|....*
gi 569007176    826 SPFTNTSLqWLPGEPNDS-GFCAYL 849
Cdd:smart00034   80 SGPVSYSN-WAPGEPNNSsGDCVVL 103
CUB pfam00431
CUB domain;
92-205 2.78e-11

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 61.54  E-value: 2.78e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176    92 CQGRFklTEPSGYLT--DGPINYKYKTKCTWLIEGYPNAVLRLRFNHFATE----CSWDHMYVYDGDSIYAPLVAVLSGL 165
Cdd:pfam00431    1 CGGVL--TDSSGSISspNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEdhdeCGYDYVEIRDGPSASSPLLGRFCGS 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 569007176   166 IVPEVrgnetvpeVVTTSGYALLHFFSDAAYNLTGFNIFY 205
Cdd:pfam00431   79 GIPED--------IVSSSNQMTIKFVSDASVQKRGFKATY 110
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 109-205 5.01e-11

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 60.48  E-value: 5.01e-11
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176    109 PINYKYKTKCTWLIEGYPNAVLRLRFNHFATE----CSWDHMYVYDGDSIYAPLVAVLSGLIVPEvrgnetvPEVVTTSG 184
Cdd:smart00042    9 PQSYPNNLDCVWTIRAPPGYRIELQFTDFDLEssdnCEYDYVEIYDGPSASSPLLGRFCGSEAPP-------PVISSSSN 81

                            90       100
                    ....*....|....*....|.
gi 569007176    185 YALLHFFSDAAYNLTGFNIFY 205
Cdd:smart00042   82 SLTLTFVSDSSVQKRGFSARY 102
EGF_Lam cd00055
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ...
 1012-1057 1.05e-07

Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies


Pssm-ID: 238012  Cd Length: 50  Bit Score: 49.27  E-value: 1.05e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 569007176 1012 ACQCNGHSTciNNNVCEQ------CKNLTTGRQCQECMPGYYGDPTNGGQCT 1057
Cdd:cd00055     1 PCDCNGHGS--LSGQCDPgtgqceCKPNTTGRRCDRCAPGYYGLPSQGGGCQ 50
PSI pfam01437
Plexin repeat; A cysteine rich repeat found in several different extracellular receptors. The ...
 888-937 9.22e-06

Plexin repeat; A cysteine rich repeat found in several different extracellular receptors. The function of the repeat is unknown. Three copies of the repeat are found Plexin. Two copies of the repeat are found in mahogany protein. A related C. elegans protein contains four copies of the repeat. The Met receptor contains a single copy of the repeat. The Pfam alignment shows 6 conserved cysteine residues that may form three conserved disulphide bridges, whereas some members show 8 conserved cysteines. The pattern of conservation suggests that cysteines 5 and 7 (that are not absolutely conserved) form a disulphide bridge (Personal observation. A Bateman).


Pssm-ID: 396154 [Multi-domain]  Cd Length: 52  Bit Score: 44.24  E-value: 9.22e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 569007176   888 PCSLRTSCANCTSSG-MECMWCSSTKRCVDSNAYiiSFPYGQCLEWQTATC 937
Cdd:pfam01437    1 RCSQYTSCSSCLAARdPYCGWCSSEGRCVRRSAC--GAPEGNCEEWEQASS 49
Kelch_5 pfam13854
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 351-391 1.75e-05

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 433528 [Multi-domain]  Cd Length: 41  Bit Score: 42.94  E-value: 1.75e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 569007176   351 PLQRYGHSLALYQENIFMYGGrMETSDGNVTDELWVFNVRS 391
Cdd:pfam13854    1 PVPRYGHCAVTVGDYIYLYGG-YTGGEGQPSDDVYVLSLPT 40
Laminin_EGF pfam00053
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
 1013-1056 2.81e-05

Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.


Pssm-ID: 395007  Cd Length: 49  Bit Score: 42.73  E-value: 2.81e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 569007176  1013 CQCNGHSTciNNNVCEQ------CKNLTTGRQCQECMPGYYGDP-TNGGQC 1056
Cdd:pfam00053    1 CDCNPHGS--LSDTCDPetgqclCKPGVTGRHCDRCKPGYYGLPsDPPQGC 49
PLN02153 PLN02153
epithiospecifier protein
 453-599 6.31e-05

epithiospecifier protein


Pssm-ID: 177814 [Multi-domain]  Cd Length: 341  Bit Score: 46.52  E-value: 6.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  453 WLVPETKGAIVQG---GYGHTSVYDEvtksIYVHGGykALPGNKYgLVDDLYKYEVNTRTWTILKESGFARYLHS----A 525
Cdd:PLN02153    9 WIKVEQKGGKGPGprcSHGIAVVGDK----LYSFGG--ELKPNEH-IDKDLYVFDFNTHTWSIAPANGDVPRISClgvrM 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 569007176  526 VLINGAMLIFGGNTHNdtslsngaKCFSaDFLAYDIACDEWKTLPKPNLHRDVN-RFGHSAVVINGSMYIFGGFS 599
Cdd:PLN02153   82 VAVGTKLYIFGGRDEK--------REFS-DFYSYDTVKNEWTFLTKLDEEGGPEaRTFHSMASDENHVYVFGGVS 147
EGF_Lam smart00180
Laminin-type epidermal growth factor-like domai;
1013-1053 1.86e-04

Laminin-type epidermal growth factor-like domai;


Pssm-ID: 214543  Cd Length: 46  Bit Score: 39.99  E-value: 1.86e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 569007176   1013 CQCNG----HSTCINNN-VCEqCKNLTTGRQCQECMPGYYGDPTNG 1053
Cdd:smart00180    1 CDCDPggsaSGTCDPDTgQCE-CKPNVTGRRCDRCAPGYYGDGPPG 45
DSL pfam01414
Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain ...
 234-280 4.49e-03

Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain defined by structure.


Pssm-ID: 460202  Cd Length: 46  Bit Score: 36.06  E-value: 4.49e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 569007176   234 CDKYWKGEACDIpYCKANCGSPDHGYCDLTGEKlcVCNDSWQGPDCS 280
Cdd:pfam01414    1 CDENYYGSTCSK-FCRPRDDKFGHYTCDANGNK--VCLPGWTGPYCD 44
DSL smart00051
delta serrate ligand;
233-279 4.76e-03

delta serrate ligand;


Pssm-ID: 128366  Cd Length: 63  Bit Score: 36.54  E-value: 4.76e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*..
gi 569007176    233 ECDKYWKGEACDIpYCKANCGSPDHGYCDLTGEKLCvcNDSWQGPDC 279
Cdd:smart00051   20 TCDENYYGEGCNK-FCRPRDDFFGHYTCDENGNKGC--LEGWMGPYC 63
 
Name Accession Description Interval E-value
CLECT_attractin_like cd03597
C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and ...
 747-873 1.10e-79

C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP); CLECT_attractin_like: C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Mouse AtrN (the product of the mahogany gene) has been shown to bind Agouti protein and to function in agouti-induced pigmentation and obesity. Mutations in AtrN have also been shown to cause spongiform encephalopathy and hypomyelination in rats and hamsters. The cytoplasmic region of mouse ALP has been shown to binds to melanocortin receptor (MCR4). Signaling through MCR4 plays a role in appetite suppression. Attractin may have therapeutic potential in the treatment of obesity. Human attractin (hAtrN) has been shown to be expressed on activated T cells and released extracellularly. The circulating serum attractin induces the spreading of monocytes that become the focus of the clustering of non-proliferating T cells.


Pssm-ID: 153067  Cd Length: 129  Bit Score: 257.13  E-value: 1.10e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  747 CGEGWNHVGDACLRINSSRESYDNAKLYCYNLSGNLASLTTSKEVEFVLDEIQK--FTQQKVSPWVGLRKINISYWGWED 824
Cdd:cd03597     1 CGEGWHLVGNSCLKINTARESYDNAKLYCRNLNAVLASLTTQKKVEFVLKELQKhqMTKQKLTPWVGLRKINVSYWCWED 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 569007176  825 MSPFTNTSLQWLPGEPNDSGFCAYLERAAVAGLKANPCTSMADGLVCEK 873
Cdd:cd03597    81 MSPFTNTTLQWLPGEPSDAGFCGYLEEPAVSGLKANPCTNPVNGSVCER 129
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
302-597 1.07e-22

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 99.46  E-value: 1.07e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  302 VGRASHKAVLHGKFMWVIGGYTFN--YSSFQMvlnYNLESSIWNVGAvsRGPLQRYGHS-LALYQENIFMYGGRMETSD- 377
Cdd:COG3055    11 TPRSEAAAALLDGKVYVAGGLSGGsaSNSFEV---YDPATNTWSELA--PLPGPPRHHAaAVAQDGKLYVFGGFTGANPs 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  378 GNVTDELWVFNVRSQSWSTKTPtvlghsqqyAVEGHSAHIMELDSRDVvmIVIFGYSAiYGYTSSIQEYHISSNTWlvpE 457
Cdd:COG3055    86 STPLNDVYVYDPATNTWTKLAP---------MPTPRGGATALLLDGKI--YVVGGWDD-GGNVAWVEVYDPATGTW---T 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  458 TKGAIVQGGYGHTSVYDEVTKsIYVHGGYKalpgnkyglvddlykYEVNTRTWTILKESGFARYLHSAVLINGAMLIFGG 537
Cdd:COG3055   151 QLAPLPTPRDHLAAAVLPDGK-ILVIGGRN---------------GSGFSNTWTTLAPLPTARAGHAAAVLGGKILVFGG 214

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  538 NTHndtslsngakcFSADFLAYDIACDEWKTLPKPNlhrdVNRFGHSAVVINGSMYIFGG 597
Cdd:COG3055   215 ESG-----------FSDEVEAYDPATNTWTALGELP----TPRHGHAAVLTDGKVYVIGG 259
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
300-541 7.41e-20

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 90.99  E-value: 7.41e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  300 PSVGRASHKAVLHGKFMWVIGGYTFNYSSFQM---VLNYNLESSIWNVGAVSrgPLQRYGHSLALYQENIFMYGGRmetS 376
Cdd:COG3055    57 PGPPRHHAAAVAQDGKLYVFGGFTGANPSSTPlndVYVYDPATNTWTKLAPM--PTPRGGATALLLDGKIYVVGGW---D 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  377 DGNVTDELWVFNVRSQSWSTKTPTVLghsqqyAVEGHSAHIMELDsrdvvMIVIFGysaiyGYTSSIqeyhiSSNTWlvp 456
Cdd:COG3055   132 DGGNVAWVEVYDPATGTWTQLAPLPT------PRDHLAAAVLPDG-----KILVIG-----GRNGSG-----FSNTW--- 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  457 ETKGAIVQGGYGHTSVYdeVTKSIYVHGGYkalpgnkYGLVDDLYKYEVNTRTWTILKESGFARYLHSAVLINGAMLIFG 536
Cdd:COG3055   188 TTLAPLPTARAGHAAAV--LGGKILVFGGE-------SGFSDEVEAYDPATNTWTALGELPTPRHGHAAVLTDGKVYVIG 258


                  ....*
gi 569007176  537 GNTHN 541
Cdd:COG3055   259 GETKP 263
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
351-611 3.68e-18

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 85.98  E-value: 3.68e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  351 PLQRYGHSLALYQENIFMYGGRmetSDGNVTDELWVFNVRSQSWSTKTP---TVLGHSQQYAVEGHsahimeldsrdvvm 427
Cdd:COG3055    10 PTPRSEAAAALLDGKVYVAGGL---SGGSASNSFEVYDPATNTWSELAPlpgPPRHHAAAVAQDGK-------------- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  428 IVIF-GYSAIYG---YTSSIQEYHISSNTWlvpETKGAIVQGGYGHTSVYDEvtKSIYVHGGYkalpgNKYGLVDDLYKY 503
Cdd:COG3055    73 LYVFgGFTGANPsstPLNDVYVYDPATNTW---TKLAPMPTPRGGATALLLD--GKIYVVGGW-----DDGGNVAWVEVY 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  504 EVNTRTWTILKESGFARYLHSA-VLINGAMLIFGGNthNDTSLSNgakcfsadflaydiacdEWKTLPkpnlHRDVNRFG 582
Cdd:COG3055   143 DPATGTWTQLAPLPTPRDHLAAaVLPDGKILVIGGR--NGSGFSN-----------------TWTTLA----PLPTARAG 199

                         250       260
                  ....*....|....*....|....*....
gi 569007176  583 HSAVVINGSMYIFGGFSSVlLNDILVYKP 611
Cdd:COG3055   200 HAAAVLGGKILVFGGESGF-SDEVEAYDP 227
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 92-207 2.47e-16

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 75.91  E-value: 2.47e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176   92 CQGRFKLTePSGYLT--DGPINYKYKTKCTWLIEGYPNAVLRLRFNHFATE----CSWDHMYVYDGDSIYAPLVAVLSGl 165
Cdd:cd00041     1 CGGTLTAS-TSGTISspNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspnCSYDYLEIYDGPSTSSPLLGRFCG- 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 569007176  166 ivpevrgNETVPEVVTTSGYALLHFFSDAAYNLTGFNIFYSI 207
Cdd:cd00041    79 -------STLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CLECT cd00037
C-type lectin (CTL)/C-type lectin-like (CTLD) domain; CLECT: C-type lectin (CTL)/C-type ...
 758-873 3.78e-15

C-type lectin (CTL)/C-type lectin-like (CTLD) domain; CLECT: C-type lectin (CTL)/C-type lectin-like (CTLD) domain; protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. This group is chiefly comprised of eukaryotic CTLDs, but contains some, as yet functionally uncharacterized, bacterial CTLDs. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces, including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. For example: mannose-binding lectin and lung surfactant proteins A and D bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, and apoptotic cells) and mediate functions associated with killing and phagocytosis; P (platlet)-, E (endothelial)-, and L (leukocyte)- selectins (sels) mediate the initial attachment, tethering, and rolling of lymphocytes on inflamed vascular walls enabling subsequent lymphocyte adhesion and transmigration. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. Several CTLDs bind to protein ligands, and only some of these binding interactions are Ca2+-dependent; including the CTLDs of Coagulation Factors IX/X (IX/X) and Von Willebrand Factor (VWF) binding proteins, and natural killer cell receptors. C-type lectins, such as lithostathine, and some type II antifreeze glycoproteins function in a Ca2+-independent manner to bind inorganic surfaces. Many proteins in this group contain a single CTLD; these CTLDs associate with each other through several different surfaces to form dimers, trimers, or tetramers, from which ligand-binding sites project in different orientations. Various vertebrate type 1 transmembrane proteins including macrophage mannose receptor, endo180, phospholipase A2 receptor, and dendritic and epithelial cell receptor (DEC205) have extracellular domains containing 8 or more CTLDs; these CTLDs remain in the parent model. In some members (IX/X and VWF binding proteins), a loop extends to the adjoining domain to form a loop-swapped dimer. A similar conformation is seen in the macrophage mannose receptor CRD4's putative non-sugar bound form of the domain in the acid environment of the endosome. Lineage specific expansions of CTLDs have occurred in several animal lineages including Drosophila melanogaster and Caenorhabditis elegans; these CTLDs also remain in the parent model.


Pssm-ID: 153057 [Multi-domain]  Cd Length: 116  Bit Score: 72.65  E-value: 3.78e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  758 CLRINSSRESYDNAKLYCYNLSGNLASLTTSKEVEFVLDEIQKFTQQKVspWVGLRKINI-SYWGWEDMSPFTNTSlQWL 836
Cdd:cd00037     2 CYKFSTEKLTWEEAQEYCRSLGGHLASIHSEEENDFLASLLKKSSSSDV--WIGLNDLSSeGTWKWSDGSPLVDYT-NWA 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 569007176  837 PGEPN--DSGFCAYLERAAVAGLKANPCTSMAdGLVCEK 873
Cdd:cd00037    79 PGEPNpgGSEDCVVLSSSSDGKWNDVSCSSKL-PFICEK 116
Lectin_C pfam00059
Lectin C-type domain; This family includes both long and short form C-type
 765-873 6.09e-14

Lectin C-type domain; This family includes both long and short form C-type


Pssm-ID: 459655 [Multi-domain]  Cd Length: 105  Bit Score: 69.04  E-value: 6.09e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176   765 RESYDNAKLYCYNLSGNLASLTTSKEVEFVLDEIqkfTQQKVSPWVGLRKINIS-YWGWEDMSPFTNTSLQWLPGEPNDS 843
Cdd:pfam00059    1 SKTWDEAREACRKLGGHLVSINSAEELDFLSSTL---KKSNKYFWIGLTDRKNEgTWKWVDGSPVNYTNWAPEPNNNGEN 77

                           90       100       110
                   ....*....|....*....|....*....|
gi 569007176   844 GFCAYLERAAvAGLKANPCTSMAdGLVCEK 873
Cdd:pfam00059   78 EDCVELSSSS-GKWNDENCNSKN-PFVCEK 105
CLECT smart00034
C-type lectin (CTL) or carbohydrate-recognition domain (CRD); Many of these domains function ...
 747-849 1.41e-13

C-type lectin (CTL) or carbohydrate-recognition domain (CRD); Many of these domains function as calcium-dependent carbohydrate binding modules.


Pssm-ID: 214480 [Multi-domain]  Cd Length: 124  Bit Score: 68.78  E-value: 1.41e-13
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176    747 CGEGWNHVGDACLRINSSRESYDNAKLYCYNLSGNLASLTTSKEVEFVLDEIQKFTQQKvSPWVGLRKINISY-WGWEDM 825
Cdd:smart00034    1 CPSGWISYGGKCYKFSTEKKTWEDAQAFCQSLGGHLASIHSEAENDFVASLLKNSGSSD-YYWIGLSDPDSNGsWQWSDG 79

                            90       100
                    ....*....|....*....|....*
gi 569007176    826 SPFTNTSLqWLPGEPNDS-GFCAYL 849
Cdd:smart00034   80 SGPVSYSN-WAPGEPNNSsGDCVVL 103
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
509-611 8.66e-12

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 67.10  E-value: 8.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  509 TWTILKESGFARYLHSAVLINGAMLIFGGNTHNDTslsngakcfSADFLAYDIACDEWKTLPKPNLHRdvnRFGHSAVVI 588
Cdd:COG3055     2 TWSSLPDLPTPRSEAAAALLDGKVYVAGGLSGGSA---------SNSFEVYDPATNTWSELAPLPGPP---RHHAAAVAQ 69

                          90       100
                  ....*....|....*....|....*...
gi 569007176  589 NGSMYIFGGF-----SSVLLNDILVYKP 611
Cdd:COG3055    70 DGKLYVFGGFtganpSSTPLNDVYVYDP 97
CUB pfam00431
CUB domain;
92-205 2.78e-11

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 61.54  E-value: 2.78e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176    92 CQGRFklTEPSGYLT--DGPINYKYKTKCTWLIEGYPNAVLRLRFNHFATE----CSWDHMYVYDGDSIYAPLVAVLSGL 165
Cdd:pfam00431    1 CGGVL--TDSSGSISspNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEdhdeCGYDYVEIRDGPSASSPLLGRFCGS 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 569007176   166 IVPEVrgnetvpeVVTTSGYALLHFFSDAAYNLTGFNIFY 205
Cdd:pfam00431   79 GIPED--------IVSSSNQMTIKFVSDASVQKRGFKATY 110
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 109-205 5.01e-11

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 60.48  E-value: 5.01e-11
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176    109 PINYKYKTKCTWLIEGYPNAVLRLRFNHFATE----CSWDHMYVYDGDSIYAPLVAVLSGLIVPEvrgnetvPEVVTTSG 184
Cdd:smart00042    9 PQSYPNNLDCVWTIRAPPGYRIELQFTDFDLEssdnCEYDYVEIYDGPSASSPLLGRFCGSEAPP-------PVISSSSN 81

                            90       100
                    ....*....|....*....|.
gi 569007176    185 YALLHFFSDAAYNLTGFNIFY 205
Cdd:smart00042   82 SLTLTFVSDSSVQKRGFSARY 102
CLECT_DC-SIGN_like cd03590
C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific ...
 747-849 6.01e-09

C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR); CLECT_DC-SIGN_like: C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). This group also contains proteins similar to hepatic asialoglycoprotein receptor (ASGP-R) and langerin in human. These proteins are type II membrane proteins with a CTLD ectodomain. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DC-SIGN is thought to mediate the initial contact between dendritic cells and resting T cells, and may also mediate the rolling of DCs on epithelium. DC-SIGN and DC-SIGNR bind to oligosaccharides present on human tissues, as well as, on pathogens including parasites, bacteria, and viruses. DC-SIGN and DC-SIGNR bind to HIV enhancing viral infection of T cells. DC-SIGN and DC-SIGNR are homotetrameric, and contain four CTLDs stabilized by a coiled coil of alpha helices. The hepatic ASGP-R is an endocytic recycling receptor which binds and internalizes desialylated glycoproteins having a terminal galactose or N-acetylgalactosamine residues on their N-linked carbohydrate chains, via the clathrin-coated pit mediated endocytic pathway, and delivers them to lysosomes for degradation. It has been proposed that glycoproteins bearing terminal Sia (sialic acid) alpha2, 6GalNAc and Sia alpha2, 6Gal are endogenous ligands for ASGP-R and that ASGP-R participates in regulating the relative concentration of serum glycoproteins bearing alpha 2,6-linked Sia. The human ASGP-R is a hetero-oligomer composed of two subunits, both of which are found within this group. Langerin is expressed in a subset of dendritic leukocytes, the Langerhans cells (LC). Langerin induces the formation of Birbeck Granules (BGs) and associates with these BGs following internalization. Langerin binds, in a calcium-dependent manner, to glyco-conjugates containing mannose and related sugars mediating their uptake and degradation. Langerin molecules oligomerize as trimers with three CTLDs held together by a coiled-coil of alpha helices.


Pssm-ID: 153060 [Multi-domain]  Cd Length: 126  Bit Score: 55.39  E-value: 6.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  747 CGEGWNHVGDACLRINSSRESYDNAKLYCYNLSGNLASLTTSKEVEFvldeIQKFTQQKVSPWVGLRKINI-SYWGWEDM 825
Cdd:cd03590     1 CPTNWKSFQSSCYFFSTEKKSWEESRQFCEDMGAHLVIINSQEEQEF----ISKILSGNRSYWIGLSDEETeGEWKWVDG 76

                          90       100
                  ....*....|....*....|....*...
gi 569007176  826 SPFTNTSLQWLPGEPNDSGF----CAYL 849
Cdd:cd03590    77 TPLNSSKTFWHPGEPNNWGGggedCAEL 104
EGF_Lam cd00055
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ...
 1012-1057 1.05e-07

Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies


Pssm-ID: 238012  Cd Length: 50  Bit Score: 49.27  E-value: 1.05e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 569007176 1012 ACQCNGHSTciNNNVCEQ------CKNLTTGRQCQECMPGYYGDPTNGGQCT 1057
Cdd:cd00055     1 PCDCNGHGS--LSGQCDPgtgqceCKPNTTGRRCDRCAPGYYGLPSQGGGCQ 50
CLECT_NK_receptors_like cd03593
C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs); ...
 747-854 2.68e-06

C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs); CLECT_NK_receptors_like: C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs), including proteins similar to oxidized low density lipoprotein (OxLDL) receptor (LOX-1), CD94, CD69, NKG2-A and -D, osteoclast inhibitory lectin (OCIL), dendritic cell-associated C-type lectin-1 (dectin-1), human myeloid inhibitory C-type lectin-like receptor (MICL), mast cell-associated functional antigen (MAFA), killer cell lectin-like receptors: subfamily F, member 1 (KLRF1) and subfamily B, member 1 (KLRB1), and lys49 receptors. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. NKRs are variously associated with activation or inhibition of natural killer (NK) cells. Activating NKRs stimulate cytolysis by NK cells of virally infected or transformed cells; inhibitory NKRs block cytolysis upon recognition of markers of healthy self cells. Most Lys49 receptors are inhibitory; some are stimulatory. OCIL inhibits NK cell function via binding to the receptor NKRP1D. Murine OCIL in addition to inhibiting NK cell function inhibits osteoclast differentiation. MAFA clusters with the type I Fc epsilon receptor (FcepsilonRI) and inhibits the mast cells secretory response to FcepsilonRI stimulus. CD72 is a negative regulator of B cell receptor signaling. NKG2D is an activating receptor for stress-induced antigens; human NKG2D ligands include the stress induced MHC-I homologs, MICA, MICB, and ULBP family of glycoproteins Several NKRs have a carbohydrate-binding capacity which is not mediated through calcium ions (e.g. OCIL binds a range of high molecular weight sulfated glycosaminoglycans including dextran sulfate, fucoidan, and gamma-carrageenan sugars). Dectin-1 binds fungal beta-glucans and in involved in the innate immune responses to fungal pathogens. MAFA binds saccharides having terminal alpha-D mannose residues in a calcium-dependent manner. LOX-1 is the major receptor for OxLDL in endothelial cells and thought to play a role in the pathology of atherosclerosis. Some NKRs exist as homodimers (e.g.Lys49, NKG2D, CD69, LOX-1) and some as heterodimers (e.g. CD94/NKG2A). Dectin-1 can function as a monomer in vitro.


Pssm-ID: 153063  Cd Length: 116  Bit Score: 47.33  E-value: 2.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  747 CGEGWNHVGDACLRINSSRESYDNAKLYCYNLSGNLASLTTSKEVEFvldeIQKFTQQKvSPWVGLRKINISY-WGWEDM 825
Cdd:cd03593     1 CPKDWICYGNKCYYFSMEKKTWNESKEACSSKNSSLLKIDDEEELEF----LQSQIGSS-SYWIGLSREKSEKpWKWIDG 75

                          90       100       110
                  ....*....|....*....|....*....|
gi 569007176  826 SPFTNtslqWL-PGEPNDSGFCAYLERAAV 854
Cdd:cd03593    76 SPLNN----LFnIRGSTKSGNCAYLSSTGI 101
PSI pfam01437
Plexin repeat; A cysteine rich repeat found in several different extracellular receptors. The ...
 888-937 9.22e-06

Plexin repeat; A cysteine rich repeat found in several different extracellular receptors. The function of the repeat is unknown. Three copies of the repeat are found Plexin. Two copies of the repeat are found in mahogany protein. A related C. elegans protein contains four copies of the repeat. The Met receptor contains a single copy of the repeat. The Pfam alignment shows 6 conserved cysteine residues that may form three conserved disulphide bridges, whereas some members show 8 conserved cysteines. The pattern of conservation suggests that cysteines 5 and 7 (that are not absolutely conserved) form a disulphide bridge (Personal observation. A Bateman).


Pssm-ID: 396154 [Multi-domain]  Cd Length: 52  Bit Score: 44.24  E-value: 9.22e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 569007176   888 PCSLRTSCANCTSSG-MECMWCSSTKRCVDSNAYiiSFPYGQCLEWQTATC 937
Cdd:pfam01437    1 RCSQYTSCSSCLAARdPYCGWCSSEGRCVRRSAC--GAPEGNCEEWEQASS 49
Kelch_5 pfam13854
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 351-391 1.75e-05

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 433528 [Multi-domain]  Cd Length: 41  Bit Score: 42.94  E-value: 1.75e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 569007176   351 PLQRYGHSLALYQENIFMYGGrMETSDGNVTDELWVFNVRS 391
Cdd:pfam13854    1 PVPRYGHCAVTVGDYIYLYGG-YTGGEGQPSDDVYVLSLPT 40
Laminin_EGF pfam00053
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
 1013-1056 2.81e-05

Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.


Pssm-ID: 395007  Cd Length: 49  Bit Score: 42.73  E-value: 2.81e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 569007176  1013 CQCNGHSTciNNNVCEQ------CKNLTTGRQCQECMPGYYGDP-TNGGQC 1056
Cdd:pfam00053    1 CDCNPHGS--LSDTCDPetgqclCKPGVTGRHCDRCKPGYYGLPsDPPQGC 49
PLN02153 PLN02153
epithiospecifier protein
 453-599 6.31e-05

epithiospecifier protein


Pssm-ID: 177814 [Multi-domain]  Cd Length: 341  Bit Score: 46.52  E-value: 6.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  453 WLVPETKGAIVQG---GYGHTSVYDEvtksIYVHGGykALPGNKYgLVDDLYKYEVNTRTWTILKESGFARYLHS----A 525
Cdd:PLN02153    9 WIKVEQKGGKGPGprcSHGIAVVGDK----LYSFGG--ELKPNEH-IDKDLYVFDFNTHTWSIAPANGDVPRISClgvrM 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 569007176  526 VLINGAMLIFGGNTHNdtslsngaKCFSaDFLAYDIACDEWKTLPKPNLHRDVN-RFGHSAVVINGSMYIFGGFS 599
Cdd:PLN02153   82 VAVGTKLYIFGGRDEK--------REFS-DFYSYDTVKNEWTFLTKLDEEGGPEaRTFHSMASDENHVYVFGGVS 147
CLECT_DGCR2_like cd03599
C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein ...
 747-851 1.22e-04

C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS); CLECT_DGCR2_like: C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DGS is also known velo-cardio-facial syndrome (VCFS). DGS is a genetic abnormality that results in malformations of the heart, face, and limbs and is associated with schizophrenia and depressive disorders. DGCR2 is a candidate for involvement in the pathogenesis of DGS since the DGCR2 gene lies within the minimal DGS critical region (MDGRC) of 22q11, which when deleted gives rise to DGS, and the DGCR2 gene is in close proximity to the balanced translocation breakpoint in a DGS patient having a balanced translocation.


Pssm-ID: 153069  Cd Length: 153  Bit Score: 43.75  E-value: 1.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  747 CGEGWNHV-GDA-CLRINSSRESYDNAKLYCYNLSGNLASLTTSKEVEFVLDEIQKFTQQ------KVSPWVGLRKI--- 815
Cdd:cd03599     1 CPSGWHHYeGTAsCYKVYLSGENYWDAVQTCQKVNGSLATFTTDQELQFILAQEWDFDERvfgrkdQCKFWVGYQYVitn 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 569007176  816 -NISYWG-WEdmSPFTNTSLQWLPGEP--------NDSGFCAYLER 851
Cdd:cd03599    81 rNHSLEGrWE--VAYKGSMEVFLPPEPifatgmstNDNVFCAQLQC 124
EGF_Lam smart00180
Laminin-type epidermal growth factor-like domai;
1013-1053 1.86e-04

Laminin-type epidermal growth factor-like domai;


Pssm-ID: 214543  Cd Length: 46  Bit Score: 39.99  E-value: 1.86e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 569007176   1013 CQCNG----HSTCINNN-VCEqCKNLTTGRQCQECMPGYYGDPTNG 1053
Cdd:smart00180    1 CDCDPggsaSGTCDPDTgQCE-CKPNVTGRRCDRCAPGYYGDGPPG 45
CLECT_CEL-1_like cd03589
C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and ...
 747-863 2.19e-04

C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina; CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CEL-1 CTLD binds three calcium ions and has a high specificity for N-acteylgalactosamine (GalNAc). CEL-1 exhibits strong cytotoxicity which is inhibited by GalNAc. This protein may play a role as a toxin defending against predation. Echinoidin is found in the coelomic fluid of the sea urchin and is specific for GalBeta1-3GalNAc. Echinoidin has a cell adhesive activity towards human cancer cells which is not mediated through the CTLD. Both CEL-1 and Echinoidin are multimeric proteins comprised of multiple dimers linked by disulfide bonds.


Pssm-ID: 153059  Cd Length: 137  Bit Score: 42.73  E-value: 2.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  747 CGEGWNHVGDACLRINSSRESYDNAKLYCYN-----LSGNLASLTTSKEVEFVLD--EIQKFTQQKVSPWVGL-RKINIS 818
Cdd:cd03589     1 CPTFWTAFGGYCYRFFGDRLTWEEAELRCRSfsipgLIAHLVSIHSQEENDFVYDlfESSRGPDTPYGLWIGLhDRTSEG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 569007176  819 YWGWEDMSPFTNTslQWLPGEPNDSGF---CAYLERAAVAGLKAN--PCT 863
Cdd:cd03589    81 PFEWTDGSPVDFT--KWAGGQPDNYGGnedCVQMWRRGDAGQSWNdmPCD 128
CLECT_REG-1_like cd03594
C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and ...
 747-851 2.22e-04

C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2); CLECT_REG-1_like: C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. REG-1 is a proliferating factor which participates in various kinds of tissue regeneration including pancreatic beta-cell regeneration, regeneration of intestinal mucosa, regeneration of motor neurons, and perhaps in tissue regeneration of damaged heart. REG-1 may play a role on the pathophysiology of Alzheimer's disease and in the development of gastric cancers. Its expression is correlated with reduced survival from early-stage colorectal cancer. REG-1 also binds and aggregates several bacterial strains from the intestinal flora and it has been suggested that it is involved in the control of the intestinal bacterial ecosystem. Rat lithostathine has calcium carbonate crystal inhibitor activity in vitro. REG-IV is unregulated in pancreatic, gastric, hepatocellular, and prostrate adenocarcinomas. REG-IV activates the EGF receptor/Akt/AP-1 signaling pathway in colorectal carcinoma. Ansocalcin, SCA-1 and -2 are found at high concentration in the calcified egg shell layer of goose and ostrich, respectively and tend to form aggregates. Ansocalcin nucleates calcite crystal aggregates in vitro.


Pssm-ID: 153064 [Multi-domain]  Cd Length: 129  Bit Score: 42.36  E-value: 2.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  747 CGEGWNHVGDACLRINSSRESYDNAKLYC--YNLSGNLASLTTSKEVEFVLDEIQKFTQQKVSPWVGLRKINISY-WGWE 823
Cdd:cd03594     1 CPKGWLPYKGNCYGYFRQPLSWSDAELFCqkYGPGAHLASIHSPAEAAAIASLISSYQKAYQPVWIGLHDPQQSRgWEWS 80

                          90       100
                  ....*....|....*....|....*....
gi 569007176  824 DMSPFTNTSlqWLPGEP-NDSGFCAYLER 851
Cdd:cd03594    81 DGSKLDYRS--WDRNPPyARGGYCAELSR 107
PHA03098 PHA03098
kelch-like protein; Provisional
 480-609 3.05e-04

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 44.76  E-value: 3.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  480 IYVHGGYkalpgNKYG-LVDDLYKYEVNTRTWTILKESGFARYLHSAVLINGAMLIFGGNTHndtslSNGAKCFSADFLa 558
Cdd:PHA03098  392 IYVIGGI-----SKNDeLLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISY-----IDNIKVYNIVES- 460

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 569007176  559 YDIACDEWKTLPKPNLHRdvnrFGHSAVVINGSMYIFGGFS-SVLLNDILVY 609
Cdd:PHA03098  461 YNPVTNKWTELSSLNFPR----INASLCIFNNKIYVVGGDKyEYYINEIEVY 508
Kelch_4 pfam13418
Galactose oxidase, central domain;
468-513 4.15e-04

Galactose oxidase, central domain;


Pssm-ID: 433191 [Multi-domain]  Cd Length: 49  Bit Score: 39.13  E-value: 4.15e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 569007176   468 GHTSVYDEVTKsIYVHGGYkalpGNKYGLVDDLYKYEVNTRTWTIL 513
Cdd:pfam13418    4 YHTSTSIPDDT-IYLFGGE----GEDGTLLSDLWVFDLSTNEWTRL 44
Kelch_3 pfam13415
Galactose oxidase, central domain;
477-528 4.79e-04

Galactose oxidase, central domain;


Pssm-ID: 433188 [Multi-domain]  Cd Length: 49  Bit Score: 39.20  E-value: 4.79e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 569007176   477 TKSIYVHGGYKALPGNKYglvDDLYKYEVNTRTWTILKESGFARYLHSAVLI 528
Cdd:pfam13415    1 GDKLYIFGGLGFDGQTRL---NDLYVYDLDTNTWTQIGDLPPPRSGHSATYI 49
CLECT_CSPGs cd03588
C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core ...
 747-847 8.05e-04

C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins; CLECT_CSPGs: C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins (CSPGs) in human and chicken aggrecan, frog brevican, and zebra fish dermacan. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Xenopus brevican is expressed in the notochord and the brain during early embryogenesis. Zebra fish dermacan is expressed in dermal bones and may play a role in dermal bone development. CSPGs do contain LINK domain(s) which bind HA. These LINK domains are considered by one classification system to be a variety of CTLD, but are omitted from this hierarchical classification based on insignificant sequence similarity.


Pssm-ID: 153058  Cd Length: 124  Bit Score: 40.64  E-value: 8.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  747 CGEGWNHVGDACLRINSSRESYDNAKLYCYNLSGNLASLTTSKEVEFVLDEIQKFTqqkvspWVGLRKINISY-WGWEDM 825
Cdd:cd03588     1 CEEGWDKFQGHCYRHFPDRETWEDAERRCREQQGHLSSIVTPEEQEFVNNNAQDYQ------WIGLNDRTIEGdFRWSDG 74

                          90       100
                  ....*....|....*....|....
gi 569007176  826 SP--FTNtslqWLPGEPnDSGFCA 847
Cdd:cd03588    75 HPlqFEN----WRPNQP-DNFFAT 93
PLN02193 PLN02193
nitrile-specifier protein
 475-640 1.13e-03

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 43.02  E-value: 1.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  475 EVTKSIYVHGG--YKALPGNKYglvddLYKYEVNTRTWTILKESGFARYLH----SAVLINGAMLIFGGnthNDTSLS-N 547
Cdd:PLN02193  173 QVGNKIYSFGGefTPNQPIDKH-----LYVFDLETRTWSISPATGDVPHLSclgvRMVSIGSTLYVFGG---RDASRQyN 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  548 GakcfsadFLAYDIACDEWKTL------PKPnlhrdvnRFGHSAVVINGSMYIFGGFSS-VLLNDILVYKPPNCKAFR-- 618
Cdd:PLN02193  245 G-------FYSFDTTTNEWKLLtpveegPTP-------RSFHSMAADEENVYVFGGVSAtARLKTLDSYNIVDKKWFHcs 310

                         170       180       190
                  ....*....|....*....|....*....|.
gi 569007176  619 --DEELCRNAGPGIKCVWNK-------NHCE 640
Cdd:PLN02193  311 tpGDSFSIRGGAGLEVVQGKvwvvygfNGCE 341
PHA03098 PHA03098
kelch-like protein; Provisional
 315-453 3.84e-03

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 41.29  E-value: 3.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  315 FMWVIGGYTFNYSSFQMVLNYNLESSIWNVGavSRGPLQRYGHSLALYQENIFMYGGRMETSDGNVTDELWVFNVRSQSW 394
Cdd:PHA03098  391 LIYVIGGISKNDELLKTVECFSLNTNKWSKG--SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 569007176  395 STKTPTVLGHSqqyaveghsahIMELDSRDVVMIVIFGYSAIYgYTSSIQEYHISSNTW 453
Cdd:PHA03098  469 TELSSLNFPRI-----------NASLCIFNNKIYVVGGDKYEY-YINEIEVYDDKTNTW 515
DSL pfam01414
Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain ...
 234-280 4.49e-03

Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain defined by structure.


Pssm-ID: 460202  Cd Length: 46  Bit Score: 36.06  E-value: 4.49e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 569007176   234 CDKYWKGEACDIpYCKANCGSPDHGYCDLTGEKlcVCNDSWQGPDCS 280
Cdd:pfam01414    1 CDENYYGSTCSK-FCRPRDDKFGHYTCDANGNK--VCLPGWTGPYCD 44
Kelch_6 pfam13964
Kelch motif;
354-396 4.72e-03

Kelch motif;


Pssm-ID: 404790 [Multi-domain]  Cd Length: 50  Bit Score: 36.16  E-value: 4.72e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 569007176   354 RYGHSLALYQENIFMYGGRmeTSDGNVTDELWVFNVRSQSWST 396
Cdd:pfam13964    2 RTFHSVVSVGGYIYVFGGY--TNASPALNKLEVYNPLTKSWEE 42
DSL smart00051
delta serrate ligand;
233-279 4.76e-03

delta serrate ligand;


Pssm-ID: 128366  Cd Length: 63  Bit Score: 36.54  E-value: 4.76e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*..
gi 569007176    233 ECDKYWKGEACDIpYCKANCGSPDHGYCDLTGEKLCvcNDSWQGPDC 279
Cdd:smart00051   20 TCDENYYGEGCNK-FCRPRDDFFGHYTCDENGNKGC--LEGWMGPYC 63
CLECT_selectins_like cd03592
C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P ...
 759-844 5.24e-03

C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels); CLECT_selectins_like: C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. P- E- and L-sels are cell adhesion receptors that mediate the initial attachment, tethering, and rolling of lymphocytes on inflamed vascular walls enabling subsequent lymphocyte adhesion and transmigration. L- sel is expressed constitutively on most leukocytes. P-sel is stored in the Weibel-Palade bodies of endothelial cells and in the alpha granules of platlets. E- sels are present on endothelial cells. Following platelet and/or endothelial cell activation P- sel is rapidly translocated to the cell surface and E-sel expression is induced. The initial step in leukocyte migration involves interactions of selectins with fucosylated, sialylated, and sulfated carbohydrate moieties on target ligands displayed on glycoprotein scaffolds on endothelial cells and leucocytes. A major ligand of P- E- and L-sels is PSGL-1 (P-sel glycoprotein ligand). Interactions of E- and P- sels with tumor cells may promote extravasation of cancer cells. Regulation of L-sel and P-sel function includes proteolytic shedding of the most extracellular portion (containing the CTLD) from the cell surface. Increased levels of the soluble form of P-sel in the plasma have been found in a number of diseases including coronary disease and diabetes. E- and P- sel also play roles in the development of synovial inflammation in inflammatory arthritis. Platelet P-sel, but not endothelial P-sel, plays a role in the inflammatory response and neointimal formation after arterial injury. Selectins may also function as signal-transducing receptors.


Pssm-ID: 153062  Cd Length: 115  Bit Score: 38.13  E-value: 5.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569007176  759 LRINSSRESYDNAKLYCYNLSGNLASLTTSKEVEFVLDEIQKFTQQKVspWVGLRKINISyWGWEDMSPFTNTSLQWLPG 838
Cdd:cd03592     3 YHYSTEKMTFNEAVKYCKSRGTDLVAIQNAEENALLNGFALKYNLGYY--WIDGNDINNE-GTWVDTDKKELEYKNWAPG 79


                  ....*.
gi 569007176  839 EPNDSG 844
Cdd:cd03592    80 EPNNGR 85
Kelch_4 pfam13418
Galactose oxidase, central domain;
354-396 6.61e-03

Galactose oxidase, central domain;


Pssm-ID: 433191 [Multi-domain]  Cd Length: 49  Bit Score: 35.67  E-value: 6.61e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 569007176   354 RYGHSL-ALYQENIFMYGGRMEtsDGNVTDELWVFNVRSQSWST 396
Cdd:pfam13418    2 RAYHTStSIPDDTIYLFGGEGE--DGTLLSDLWVFDLSTNEWTR 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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