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Conserved domains on  [gi|568997686|ref|XP_006523165|]
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ubiquitin carboxyl-terminal hydrolase 16 isoform X3 [Mus musculus]

Protein Classification

Peptidase_C19K domain-containing protein( domain architecture ID 13432443)

Peptidase_C19K domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
315-513 2.75e-83

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 259.63  E-value: 2.75e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 315 REAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkanikgdrrhvyTNAKKQMLVSLAPPVLTLHLKRFQQ 394
Cdd:cd02667  103 RSDEIKSECSIESCLKQFTEVEILEGNNKFACENC--------------------TKAKKQYLISKLPPVLVIHLKRFQQ 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 395 AGF-NLRKVNKHIKFPEILDLAPFCTLKCkNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVLHgdI 473
Cdd:cd02667  163 PRSaNLRKVSRHVSFPEILDLAPFCDPKC-NSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKS--K 239
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 568997686 474 PQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 513
Cdd:cd02667  240 PAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
25-514 7.23e-19

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 90.33  E-value: 7.23e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  25 DEEVKNKVKD--YEKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSIN----DKNVKMTM 98
Cdd:COG5560  392 DVVVKKKAKEcwWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVvfpeSGRRQPLK 471
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  99 EEEDKDSEEEKDDSYMKSRSDLpSGTSKHLQKKAKKQAKKQAKNQRR---QQKI-QERFLHFNElcatdyTEDNEreadt 174
Cdd:COG5560  472 IELDASSTIRGLKKLVDAEYGK-LGCFEIKVMCIYYGGNYNMLEPADkvlLQDIpQTDFVYLYE------TNDNG----- 539
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 175 alageVEVDTdsTHGSQEEATQ---------IELSVNQKdldgqeSMIerTPDVQESPEDLGVKSANTESDLGIVTPAPE 245
Cdd:COG5560  540 -----IEVPV--VHLRIEKGYKskrlfgdpfLQLNVLIK------ASI--YDKLVKEFEELLVLVEMKKTDVDLVSEQVR 604
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 246 CPRDfngaflEERTSGELDIINGLKNLNL------NAAVDPDEINIEIpndSHSAPKVYEVMNEDPETAFCTLANREAFS 319
Cdd:COG5560  605 LLRE------ESSPSSWLKLETEIDTKREeqveeeGQMNFNDAVVISC---EWEEKRYLSLFSYDPLWTIREIGAAERTI 675
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 320 TdecsIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkaniKGDRRhvytnAKKQMLVSLAPPVLTLHLKRFQQAGFNL 399
Cdd:COG5560  676 T----LQDCLNEFSKPEQLGLSDSWYCPGC------------KEFRQ-----ASKQMELWRLPMILIIHLKRFSSVRSFR 734
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 400 RKVNKHIKFPeILDLapfcTLKCKNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdcem 479
Cdd:COG5560  735 DKIDDLVEYP-IDDL----DLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYAR----------------------- 786
                        490       500       510
                 ....*....|....*....|....*....|....*
gi 568997686 480 ESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYER 514
Cdd:COG5560  787 NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
315-513 2.75e-83

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 259.63  E-value: 2.75e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 315 REAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkanikgdrrhvyTNAKKQMLVSLAPPVLTLHLKRFQQ 394
Cdd:cd02667  103 RSDEIKSECSIESCLKQFTEVEILEGNNKFACENC--------------------TKAKKQYLISKLPPVLVIHLKRFQQ 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 395 AGF-NLRKVNKHIKFPEILDLAPFCTLKCkNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVLHgdI 473
Cdd:cd02667  163 PRSaNLRKVSRHVSFPEILDLAPFCDPKC-NSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKS--K 239
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 568997686 474 PQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 513
Cdd:cd02667  240 PAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
303-512 4.10e-34

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 130.64  E-value: 4.10e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  303 EDPETAFCTLANREAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAP 382
Cdd:pfam00443 142 FEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQ-----------------DAIKQLKISRLP 204
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  383 PVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKnvAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertasc 462
Cdd:pfam00443 205 PVLIIHLKRFSYNRSTWEKLNTEVEFPLELDLSRYLAEELK--PKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK------ 276
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568997686  463 hlsnlvlhgdipqdcemESTKGQWFHISDTHVQAV-PITKVLNSQAYLLFY 512
Cdd:pfam00443 277 -----------------AYENNRWYKFDDEKVTEVdEETAVLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
25-514 7.23e-19

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 90.33  E-value: 7.23e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  25 DEEVKNKVKD--YEKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSIN----DKNVKMTM 98
Cdd:COG5560  392 DVVVKKKAKEcwWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVvfpeSGRRQPLK 471
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  99 EEEDKDSEEEKDDSYMKSRSDLpSGTSKHLQKKAKKQAKKQAKNQRR---QQKI-QERFLHFNElcatdyTEDNEreadt 174
Cdd:COG5560  472 IELDASSTIRGLKKLVDAEYGK-LGCFEIKVMCIYYGGNYNMLEPADkvlLQDIpQTDFVYLYE------TNDNG----- 539
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 175 alageVEVDTdsTHGSQEEATQ---------IELSVNQKdldgqeSMIerTPDVQESPEDLGVKSANTESDLGIVTPAPE 245
Cdd:COG5560  540 -----IEVPV--VHLRIEKGYKskrlfgdpfLQLNVLIK------ASI--YDKLVKEFEELLVLVEMKKTDVDLVSEQVR 604
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 246 CPRDfngaflEERTSGELDIINGLKNLNL------NAAVDPDEINIEIpndSHSAPKVYEVMNEDPETAFCTLANREAFS 319
Cdd:COG5560  605 LLRE------ESSPSSWLKLETEIDTKREeqveeeGQMNFNDAVVISC---EWEEKRYLSLFSYDPLWTIREIGAAERTI 675
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 320 TdecsIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkaniKGDRRhvytnAKKQMLVSLAPPVLTLHLKRFQQAGFNL 399
Cdd:COG5560  676 T----LQDCLNEFSKPEQLGLSDSWYCPGC------------KEFRQ-----ASKQMELWRLPMILIIHLKRFSSVRSFR 734
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 400 RKVNKHIKFPeILDLapfcTLKCKNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdcem 479
Cdd:COG5560  735 DKIDDLVEYP-IDDL----DLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYAR----------------------- 786
                        490       500       510
                 ....*....|....*....|....*....|....*
gi 568997686 480 ESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYER 514
Cdd:COG5560  787 NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
43-92 2.51e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 82.05  E-value: 2.51e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 568997686  43 SFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSINDK 92
Cdd:cd02667   67 TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESC 116
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
367-503 4.24e-11

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 65.66  E-value: 4.24e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  367 HVYTNAKKQMLVSLAPPVLTLHLKRFQqAGF---NLRKVNKHIKFPEILDLAPFCTLKCKNvaEESTRVLYSLYGVVEHS 443
Cdd:COG5077   364 HGLQDAKKGVIFESLPPVLHLQLKRFE-YDFerdMMVKINDRYEFPLEIDLLPFLDRDADK--SENSDAVYVLYGVLVHS 440
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  444 GTMRSGHYTAYAKertaschlsnlvlhgdipqdcemESTKGQWFHISDTHVQAVPITKVL 503
Cdd:COG5077   441 GDLHEGHYYALLK-----------------------PEKDGRWYKFDDTRVTRATEKEVL 477
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
22-84 3.48e-06

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 48.98  E-value: 3.48e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568997686   22 EKLDEEVKNKVKdyekkKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQS 84
Cdd:pfam00443 100 DGLHEDLNGNHS-----TENESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSA 157
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
315-513 2.75e-83

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 259.63  E-value: 2.75e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 315 REAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkanikgdrrhvyTNAKKQMLVSLAPPVLTLHLKRFQQ 394
Cdd:cd02667  103 RSDEIKSECSIESCLKQFTEVEILEGNNKFACENC--------------------TKAKKQYLISKLPPVLVIHLKRFQQ 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 395 AGF-NLRKVNKHIKFPEILDLAPFCTLKCkNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVLHgdI 473
Cdd:cd02667  163 PRSaNLRKVSRHVSFPEILDLAPFCDPKC-NSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKS--K 239
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 568997686 474 PQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 513
Cdd:cd02667  240 PAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
324-512 1.34e-41

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 150.89  E-value: 1.34e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 324 SIQHCLYQFTRNEKLQDANKLLCEVCSRrqcngpkanikgdrrhvYTNAKKQMLVSLAPPVLTLHLKRFQqaGFNLRKVN 403
Cdd:cd02661  163 SLEDALEQFTKPEQLDGENKYKCERCKK-----------------KVKASKQLTIHRAPNVLTIHLKRFS--NFRGGKIN 223
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 404 KHIKFPEILDLAPFCTlkckNVAEESTRvlYSLYGVVEHSGT-MRSGHYTAYAKertaschlsnlvlhgdipqdcemeST 482
Cdd:cd02661  224 KQISFPETLDLSPYMS----QPNDGPLK--YKLYAVLVHSGFsPHSGHYYCYVK------------------------SS 273
                        170       180       190
                 ....*....|....*....|....*....|
gi 568997686 483 KGQWFHISDTHVQAVPITKVLNSQAYLLFY 512
Cdd:cd02661  274 NGKWYNMDDSKVSPVSIETVLSQKAYILFY 303
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
319-513 1.85e-40

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 146.47  E-value: 1.85e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 319 STDECSIQHCLYQFTRNEKLQDANKLLCEvcsrrqcngpkanikgdrRHVYTNAKKQMLVSLAPPVLTLHLKRFQQAG-F 397
Cdd:cd02257   95 GLPQVSLEDCLEKFFKEEILEGDNCYKCE------------------KKKKQEATKRLKIKKLPPVLIIHLKRFSFNEdG 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 398 NLRKVNKHIKFPEILDLAPFCTLKCKNVAEESTRVLYSLYGVVEHSGT-MRSGHYTAYAKERtaschlsnlvlhgdipqd 476
Cdd:cd02257  157 TKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTsADSGHYVAYVKDP------------------ 218
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 568997686 477 cemesTKGQWFHISDTHVQAVPITKVL-----NSQAYLLFYE 513
Cdd:cd02257  219 -----SDGKWYKFNDDKVTEVSEEEVLefgslSSSAYILFYE 255
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
319-513 3.84e-35

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 131.26  E-value: 3.84e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 319 STDECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQCngpkanikgdrrhvytnAKKQMLVSLAPPVLTLHLKRFQQAGFN 398
Cdd:cd02674   80 DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRK-----------------ATKKLTISRLPKVLIIHLKRFSFSRGS 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 399 LRKVNKHIKFP-EILDLAPFCTLKCKNvaeesTRVLYSLYGVVEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdc 477
Cdd:cd02674  143 TRKLTTPVTFPlNDLDLTPYVDTRSFT-----GPFKYDLYAVVNHYGSLNGGHYTAYCK--------------------- 196
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 568997686 478 emESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 513
Cdd:cd02674  197 --NNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
303-512 4.10e-34

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 130.64  E-value: 4.10e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  303 EDPETAFCTLANREAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAP 382
Cdd:pfam00443 142 FEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQ-----------------DAIKQLKISRLP 204
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  383 PVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKnvAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertasc 462
Cdd:pfam00443 205 PVLIIHLKRFSYNRSTWEKLNTEVEFPLELDLSRYLAEELK--PKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK------ 276
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568997686  463 hlsnlvlhgdipqdcemESTKGQWFHISDTHVQAV-PITKVLNSQAYLLFY 512
Cdd:pfam00443 277 -----------------AYENNRWYKFDDEKVTEVdEETAVLSSSAYILFY 310
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
324-512 8.00e-30

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 119.40  E-value: 8.00e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 324 SIQHCLYQFTRNEKLQDANkLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRFQQAGFNL-RKV 402
Cdd:cd02660  177 TLSDCLDRFTRPEKLGDFA-YKCSGCGSTQ-----------------EATKQLSIKKLPPVLCFQLKRFEHSLNKTsRKI 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 403 NKHIKFPEILDLAPFCTLKCKNVAEES---TRVLYSLYGVVEHSGTMRSGHYTAYAKERtaschlsnlvlhgdipqdcem 479
Cdd:cd02660  239 DTYVQFPLELNMTPYTSSSIGDTQDSNsldPDYTYDLFAVVVHKGTLDTGHYTAYCRQG--------------------- 297
                        170       180       190
                 ....*....|....*....|....*....|...
gi 568997686 480 estKGQWFHISDTHVQAVPITKVLNSQAYLLFY 512
Cdd:cd02660  298 ---DGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
324-515 4.67e-25

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 105.80  E-value: 4.67e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 324 SIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRFQqagFNL---- 399
Cdd:cd02659  152 NLEESLDAYVQGETLEGDNKYFCEKCGKKV-----------------DAEKGVCFKKLPPVLTLQLKRFE---FDFetmm 211
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 400 -RKVNKHIKFPEILDLAPFC--TLKCKNVAEESTRV---LYSLYGVVEHSGTMRSGHYTAYAKERtaschlsnlvlhgdi 473
Cdd:cd02659  212 rIKINDRFEFPLELDMEPYTekGLAKKEGDSEKKDSesyIYELHGVLVHSGDAHGGHYYSYIKDR--------------- 276
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568997686 474 pqdcemesTKGQWFHISDTHV----------------------QAVPITKVLNSQAYLLFYERI 515
Cdd:cd02659  277 --------DDGKWYKFNDDVVtpfdpndaeeecfggeetqktyDSGPRAFKRTTNAYMLFYERK 332
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
311-513 1.11e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 93.97  E-value: 1.11e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 311 TLANREAFSTDECSIQHCLYQFTRNEKLQDANkllCEVCsrrqcngpkanikgdrrhvytnakkQMLVSLAPPVLTLHLK 390
Cdd:cd02662   84 SLPVPNQSSGSGTTLEHCLDDFLSTEIIDDYK---CDRC-------------------------QTVIVRLPQILCIHLS 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 391 RFQQAGFN-LRKVNKHIKFPEILdlapfctlkcknvaeesTRVLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVL 469
Cdd:cd02662  136 RSVFDGRGtSTKNSCKVSFPERL-----------------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSF 198
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 568997686 470 HGDIPQDCemeSTKGQWFHISDTHVQAVPITKVL-NSQAYLLFYE 513
Cdd:cd02662  199 VRMREGPS---STSHPWWRISDTTVKEVSESEVLeQKSAYMLFYE 240
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
25-514 7.23e-19

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 90.33  E-value: 7.23e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  25 DEEVKNKVKD--YEKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSIN----DKNVKMTM 98
Cdd:COG5560  392 DVVVKKKAKEcwWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVvfpeSGRRQPLK 471
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  99 EEEDKDSEEEKDDSYMKSRSDLpSGTSKHLQKKAKKQAKKQAKNQRR---QQKI-QERFLHFNElcatdyTEDNEreadt 174
Cdd:COG5560  472 IELDASSTIRGLKKLVDAEYGK-LGCFEIKVMCIYYGGNYNMLEPADkvlLQDIpQTDFVYLYE------TNDNG----- 539
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 175 alageVEVDTdsTHGSQEEATQ---------IELSVNQKdldgqeSMIerTPDVQESPEDLGVKSANTESDLGIVTPAPE 245
Cdd:COG5560  540 -----IEVPV--VHLRIEKGYKskrlfgdpfLQLNVLIK------ASI--YDKLVKEFEELLVLVEMKKTDVDLVSEQVR 604
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 246 CPRDfngaflEERTSGELDIINGLKNLNL------NAAVDPDEINIEIpndSHSAPKVYEVMNEDPETAFCTLANREAFS 319
Cdd:COG5560  605 LLRE------ESSPSSWLKLETEIDTKREeqveeeGQMNFNDAVVISC---EWEEKRYLSLFSYDPLWTIREIGAAERTI 675
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 320 TdecsIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkaniKGDRRhvytnAKKQMLVSLAPPVLTLHLKRFQQAGFNL 399
Cdd:COG5560  676 T----LQDCLNEFSKPEQLGLSDSWYCPGC------------KEFRQ-----ASKQMELWRLPMILIIHLKRFSSVRSFR 734
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 400 RKVNKHIKFPeILDLapfcTLKCKNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdcem 479
Cdd:COG5560  735 DKIDDLVEYP-IDDL----DLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYAR----------------------- 786
                        490       500       510
                 ....*....|....*....|....*....|....*
gi 568997686 480 ESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYER 514
Cdd:COG5560  787 NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-513 5.41e-18

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 84.85  E-value: 5.41e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 323 CSIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRFQ--QAGFNLR 400
Cdd:cd02664  134 PSVQDLLNYFLSPEKLTGDNQYYCEKCASLQ-----------------DAEKEMKVTGAPEYLILTLLRFSydQKTHVRE 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 401 KVNKHIKFPEILDL-----------APFCTLKCKNVAEES--TRVLYSLYGVVEHSGT-MRSGHYTAYAKERTASchlSN 466
Cdd:cd02664  197 KIMDNVSINEVLSLpvrveskssesPLEKKEEESGDDGELvtRQVHYRLYAVVVHSGYsSESGHYFTYARDQTDA---DS 273
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 568997686 467 LVLHGDIPQDCEMESTKGQWFHISDTHVQAVPITKVLNSQ-------AYLLFYE 513
Cdd:cd02664  274 TGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTsrfpkdtPYILFYE 327
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
43-92 2.51e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 82.05  E-value: 2.51e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 568997686  43 SFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSINDK 92
Cdd:cd02667   67 TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESC 116
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
324-501 2.19e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 80.16  E-value: 2.19e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 324 SIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRF---QQAGfNLR 400
Cdd:cd02668  157 TLEECIDEFLKEEQLTGDNQYFCESCNSKT-----------------DATRRIRLTTLPPTLNFQLLRFvfdRKTG-AKK 218
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 401 KVNKHIKFPEILDLAPFCTLKCKNVAEestrvlYSLYGVVEHSGT-MRSGHYTAYAKertaschlsnlvlhgdipqdcem 479
Cdd:cd02668  219 KLNASISFPEILDMGEYLAESDEGSYV------YELSGVLIHQGVsAYSGHYIAHIK----------------------- 269
                        170       180
                 ....*....|....*....|..
gi 568997686 480 ESTKGQWFHISDTHVQAVPITK 501
Cdd:cd02668  270 DEQTGEWYKFNDEDVEEMPGKP 291
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
322-513 4.93e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 78.89  E-value: 4.93e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 322 ECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQcngpkanikgdrrhvytNAKKQMLVSLAPPVLTLHLKRFQQAGfnlrK 401
Cdd:cd02663  146 NTSITSCLRQFSATETLCGRNKFYCDECCSLQ-----------------EAEKRMKIKKLPKILALHLKRFKYDE----Q 204
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 402 VNKHIK------FPeiLDLAPFCTlkcKNVAEESTRvLYSLYGVVEH--SGTMRsGHYTAYAKertaschlsnlvlhgdi 473
Cdd:cd02663  205 LNRYIKlfyrvvFP--LELRLFNT---TDDAENPDR-LYELVAVVVHigGGPNH-GHYVSIVK----------------- 260
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 568997686 474 pqdcemesTKGQWFHISDTHVQAVPITKVLN--------SQAYLLFYE 513
Cdd:cd02663  261 --------SHGGWLLFDDETVEKIDENAVEEffgdspnqATAYVLFYQ 300
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
281-456 1.93e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 77.63  E-value: 1.93e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 281 DEINIEIPNDSHSAPKVYEVMNEDPETafctlanreafSTDECSIQHCLYQFTRNEKLQDANKLLCEVCsrrqcngpkan 360
Cdd:cd02671  149 DFQDISVPVQESELSKSEESSEISPDP-----------KTEMKTLKWAISQFASVERIVGEDKYFCENC----------- 206
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 361 ikgdrrHVYTNAKKQMLVSLAPPVLTLHLKRFQQAGF------NLRKVNKHIkfpeildLAPFcTLKCKNVAEESTRVLY 434
Cdd:cd02671  207 ------HHYTEAERSLLFDKLPEVITIHLKCFAANGSefdcygGLSKVNTPL-------LTPL-KLSLEEWSTKPKNDVY 272
                        170       180
                 ....*....|....*....|...
gi 568997686 435 SLYGVVEHSG-TMRSGHYTAYAK 456
Cdd:cd02671  273 RLFAVVMHSGaTISSGHYTAYVR 295
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
367-503 4.24e-11

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 65.66  E-value: 4.24e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  367 HVYTNAKKQMLVSLAPPVLTLHLKRFQqAGF---NLRKVNKHIKFPEILDLAPFCTLKCKNvaEESTRVLYSLYGVVEHS 443
Cdd:COG5077   364 HGLQDAKKGVIFESLPPVLHLQLKRFE-YDFerdMMVKINDRYEFPLEIDLLPFLDRDADK--SENSDAVYVLYGVLVHS 440
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686  444 GTMRSGHYTAYAKertaschlsnlvlhgdipqdcemESTKGQWFHISDTHVQAVPITKVL 503
Cdd:COG5077   441 GDLHEGHYYALLK-----------------------PEKDGRWYKFDDTRVTRATEKEVL 477
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
360-515 5.51e-11

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 63.28  E-value: 5.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 360 NIKGDRRHVYTNAKKQMlvslaPPVLTLHLKRFQQAGFNlRKVNKHIKfpEILDLaPFCTLKCKNVAEEstrVLYSLYGV 439
Cdd:COG5533  163 ELEVQAKQEYEVSFVKL-----PKILTIQLKRFANLGGN-QKIDTEVD--EKFEL-PVKHDQILNIVKE---TYYDLVGF 230
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568997686 440 VEHSGTMRSGHYTAYAKertaschlsnlvlhgdipqdcemesTKGQWFHISDTHVQAVPITKVLNS---QAYLLFYERI 515
Cdd:COG5533  231 VLHQGSLEGGHYIAYVK-------------------------KGGKWEKANDSDVTPVSEEEAINEkakNAYLYFYERI 284
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
373-513 4.04e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 58.11  E-value: 4.04e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 373 KKQMLVSLAPPVLTLHLKRFQ---QAGFNLrKVNKHIKFPEILDLAPFCTLKCknvaeestrvLYSLYGVVEHSG-TMRS 448
Cdd:cd02657  188 TKTSRISRLPKYLTVQFVRFFwkrDIQKKA-KILRKVKFPFELDLYELCTPSG----------YYELVAVITHQGrSADS 256
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568997686 449 GHYTAYAKertaschlsnlvlhgdipqdcemESTKGQWFHISDTHVQAVPITKVLN-------SQAYLLFYE 513
Cdd:cd02657  257 GHYVAWVR-----------------------RKNDGKWIKFDDDKVSEVTEEDILKlsgggdwHIAYILLYK 305
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
369-513 2.80e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 49.24  E-value: 2.80e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 369 YTNAKKQMLVSLAPPVLTLHLKRFQ-QAGFNLRKVNKHIKFPEILDLAPfctlkcknvaeestrvlYSLYGVVEHSGT-M 446
Cdd:cd02658  203 KTTATKTTGFKTFPDYLVINMKRFQlLENWVPKKLDVPIDVPEELGPGK-----------------YELIAFISHKGTsV 265
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568997686 447 RSGHYTAYAKERTASchlsnlvlhgdipqdcemestKGQWFHISDTHVQAVPITKVLNSQAYLLFYE 513
Cdd:cd02658  266 HSGHYVAHIKKEIDG---------------------EGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
22-84 3.48e-06

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 48.98  E-value: 3.48e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568997686   22 EKLDEEVKNKVKdyekkKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQS 84
Cdd:pfam00443 100 DGLHEDLNGNHS-----TENESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSA 157
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
22-79 3.96e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 45.76  E-value: 3.96e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 568997686  22 EKLDEEVKNKVKDYEKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPV 79
Cdd:cd02663   86 ERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDV 143
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
379-513 4.18e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 45.21  E-value: 4.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 379 SLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPF----------CTLKCKNVAEE----STRVLY--SLYGVVEH 442
Cdd:cd02670   96 AKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFvaddpracskCQLECRVCYDDkdfsPTCGKFklSLCSAVCH 175
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568997686 443 SGTMR-SGHYTAYAKERTaschlsnlvlhgDIPQDCEMESTKGQWF---HISDTHVQAVPI---TKVLNSQAYLLFYE 513
Cdd:cd02670  176 RGTSLeTGHYVAFVRYGS------------YSLTETDNEAYNAQWVffdDMADRDGVSNGFnipAARLLEDPYMLFYQ 241
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
22-88 5.82e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 45.06  E-value: 5.82e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568997686  22 EKLDEEVKNKVKDYEKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPvLDDQSGKKS 88
Cdd:cd02660  100 DQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLD-IPNKSTPSW 165
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
43-88 1.03e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 44.19  E-value: 1.03e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 568997686  43 SFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKS 88
Cdd:cd02661  122 TLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDA 167
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
363-513 7.15e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 41.92  E-value: 7.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568997686 363 GDRRHVYTNAKKQMLVSLAPPVLTLHLKRFQQAGFNLRKvNKHI-KFPEILDLAPFCTLKCKNVAEESTRvlYSLYGVVE 441
Cdd:cd02669  314 GKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEK-NPTIvNFPIKNLDLSDYVHFDKPSLNLSTK--YNLVANIV 390
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568997686 442 HSGT-MRSGHYtayakertaSCHLSNlvlhgdipqdcemESTKgQWFHISDTHVQAVPITKVLNSQAYLLFYE 513
Cdd:cd02669  391 HEGTpQEDGTW---------RVQLRH-------------KSTN-KWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
41-86 5.01e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 39.11  E-value: 5.01e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 568997686  41 IPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGK 86
Cdd:cd02671  119 IQELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSK 164
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
22-89 7.34e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 38.78  E-value: 7.34e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568997686  22 EKLDEevknKVKDYEKKKAIPSFvdriFGGELTSTIMCDECRTVSLVHESFLDLSLPVlddqSGKKSI 89
Cdd:cd02659   98 DKLEE----KLKGTGQEGLIKNL----FGGKLVNYIICKECPHESEREEYFLDLQVAV----KGKKNL 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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