NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|568991519|ref|XP_006520580|]
View 

alpha-lactalbumin isoform X1 [Mus musculus]

Protein Classification

LYZ_LA domain-containing protein( domain architecture ID 11081454)

LYZ_LA domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Lys pfam00062
C-type lysozyme/alpha-lactalbumin family; Alpha-lactalbumin is the regulatory subunit of ...
 21-138 6.35e-60

C-type lysozyme/alpha-lactalbumin family; Alpha-lactalbumin is the regulatory subunit of lactose synthase, changing the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. C-type lysozymes are secreted bacteriolytic enzymes that cleave the peptidoglycan of bacterial cell walls. Structure is a multi-domain, mixed alpha and beta fold, containing four conserved disulfide bonds.


:

Pssm-ID: 395016  Cd Length: 123  Bit Score: 180.69  E-value: 6.35e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568991519   21 TELTKCKVSHAIK--DIDGYQGISLLEWACVLFHTSGYDTQAVVNDNGSTEYGLFQISDRFWCKSSEFPESENICGISCD 98
Cdd:pfam00062   1 KQFTRCELARELKklGMDGYRGISLAEWVCLAFHESGYDTQAIVYNNGSTDYGIFQINDKYWCKDGKTPQSVNICGISCD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 568991519   99 KLLDDELDDDIACAKKILAIKGIDYWKAYKPMCSEKLEQW 138
Cdd:pfam00062  81 KLLDDDITDDIMCAKKILDPQGIDAWLAWKPHCSEDLEQW 120
 
Name Accession Description Interval E-value
Lys pfam00062
C-type lysozyme/alpha-lactalbumin family; Alpha-lactalbumin is the regulatory subunit of ...
 21-138 6.35e-60

C-type lysozyme/alpha-lactalbumin family; Alpha-lactalbumin is the regulatory subunit of lactose synthase, changing the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. C-type lysozymes are secreted bacteriolytic enzymes that cleave the peptidoglycan of bacterial cell walls. Structure is a multi-domain, mixed alpha and beta fold, containing four conserved disulfide bonds.


Pssm-ID: 395016  Cd Length: 123  Bit Score: 180.69  E-value: 6.35e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568991519   21 TELTKCKVSHAIK--DIDGYQGISLLEWACVLFHTSGYDTQAVVNDNGSTEYGLFQISDRFWCKSSEFPESENICGISCD 98
Cdd:pfam00062   1 KQFTRCELARELKklGMDGYRGISLAEWVCLAFHESGYDTQAIVYNNGSTDYGIFQINDKYWCKDGKTPQSVNICGISCD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 568991519   99 KLLDDELDDDIACAKKILAIKGIDYWKAYKPMCSEKLEQW 138
Cdd:pfam00062  81 KLLDDDITDDIMCAKKILDPQGIDAWLAWKPHCSEDLEQW 120
LYZ_LA cd16898
alpha lactalbumin; alpha-lactalbumin (lactose synthase B protein, LA) is a calcium-binding ...
 21-140 2.91e-58

alpha lactalbumin; alpha-lactalbumin (lactose synthase B protein, LA) is a calcium-binding metalloprotein that is expressed exclusively in the mammary gland during lactation. LA is the regulatory subunit of the enzyme lactose synthase. The association of LA with the catalytic component of lactose synthase, galactosyltransferase, alters the acceptor substrate specificity of this glycosyltransferase, facilitating biosynthesis of lactose.


Pssm-ID: 340384  Cd Length: 123  Bit Score: 176.86  E-value: 2.91e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568991519  21 TELTKCKVSHAIKDI--DGYQGISLLEWACVLFHTSGYDTQAVVNDNGSTEYGLFQISDRFWCKSSEFPESENICGISCD 98
Cdd:cd16898    1 IIFTKCELSQILKEHglDGFNGISLPEWICVTFHTSGYDTQALVYNNGSTEYGLFQISNKGWCDDSQEPVSRNICGISCS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 568991519  99 KLLDDELDDDIACAKKILAI-KGIDYWKAYKPMCSEKLEQWRC 140
Cdd:cd16898   81 KLLDDDITDDIACAKKILAIpKGIDYWKAHKPFCREDLDQWRC 123
LYZ1 smart00263
Alpha-lactalbumin / lysozyme C;
21-141 2.45e-52

Alpha-lactalbumin / lysozyme C;


Pssm-ID: 197612  Cd Length: 127  Bit Score: 161.69  E-value: 2.45e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568991519    21 TELTKCKVSHAIKD--IDGYQGISLLEWACVLFHTSGYDTQAVVNDNG-STEYGLFQISDRFWCKSSEFPESENICGISC 97
Cdd:smart00263   1 KVFTRCELARELKRlgLDGYRGISLANWVCLAFHESGYNTQATNYNNGgSTDYGIFQINSKYWCNDGKTPGSVNACGISC 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 568991519    98 DKLLDDELDDDIACAKKILAIKGIDYWKAYKPMC-SEKLEQWR--CE 141
Cdd:smart00263  81 SKLLDDDITDDVKCAKKIVSDQGIDAWVAWKNHCqGEDLSQWIrgCG 127
 
Name Accession Description Interval E-value
Lys pfam00062
C-type lysozyme/alpha-lactalbumin family; Alpha-lactalbumin is the regulatory subunit of ...
 21-138 6.35e-60

C-type lysozyme/alpha-lactalbumin family; Alpha-lactalbumin is the regulatory subunit of lactose synthase, changing the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. C-type lysozymes are secreted bacteriolytic enzymes that cleave the peptidoglycan of bacterial cell walls. Structure is a multi-domain, mixed alpha and beta fold, containing four conserved disulfide bonds.


Pssm-ID: 395016  Cd Length: 123  Bit Score: 180.69  E-value: 6.35e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568991519   21 TELTKCKVSHAIK--DIDGYQGISLLEWACVLFHTSGYDTQAVVNDNGSTEYGLFQISDRFWCKSSEFPESENICGISCD 98
Cdd:pfam00062   1 KQFTRCELARELKklGMDGYRGISLAEWVCLAFHESGYDTQAIVYNNGSTDYGIFQINDKYWCKDGKTPQSVNICGISCD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 568991519   99 KLLDDELDDDIACAKKILAIKGIDYWKAYKPMCSEKLEQW 138
Cdd:pfam00062  81 KLLDDDITDDIMCAKKILDPQGIDAWLAWKPHCSEDLEQW 120
LYZ_LA cd16898
alpha lactalbumin; alpha-lactalbumin (lactose synthase B protein, LA) is a calcium-binding ...
 21-140 2.91e-58

alpha lactalbumin; alpha-lactalbumin (lactose synthase B protein, LA) is a calcium-binding metalloprotein that is expressed exclusively in the mammary gland during lactation. LA is the regulatory subunit of the enzyme lactose synthase. The association of LA with the catalytic component of lactose synthase, galactosyltransferase, alters the acceptor substrate specificity of this glycosyltransferase, facilitating biosynthesis of lactose.


Pssm-ID: 340384  Cd Length: 123  Bit Score: 176.86  E-value: 2.91e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568991519  21 TELTKCKVSHAIKDI--DGYQGISLLEWACVLFHTSGYDTQAVVNDNGSTEYGLFQISDRFWCKSSEFPESENICGISCD 98
Cdd:cd16898    1 IIFTKCELSQILKEHglDGFNGISLPEWICVTFHTSGYDTQALVYNNGSTEYGLFQISNKGWCDDSQEPVSRNICGISCS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 568991519  99 KLLDDELDDDIACAKKILAI-KGIDYWKAYKPMCSEKLEQWRC 140
Cdd:cd16898   81 KLLDDDITDDIACAKKILAIpKGIDYWKAHKPFCREDLDQWRC 123
LYZ1 smart00263
Alpha-lactalbumin / lysozyme C;
21-141 2.45e-52

Alpha-lactalbumin / lysozyme C;


Pssm-ID: 197612  Cd Length: 127  Bit Score: 161.69  E-value: 2.45e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568991519    21 TELTKCKVSHAIKD--IDGYQGISLLEWACVLFHTSGYDTQAVVNDNG-STEYGLFQISDRFWCKSSEFPESENICGISC 97
Cdd:smart00263   1 KVFTRCELARELKRlgLDGYRGISLANWVCLAFHESGYNTQATNYNNGgSTDYGIFQINSKYWCNDGKTPGSVNACGISC 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 568991519    98 DKLLDDELDDDIACAKKILAIKGIDYWKAYKPMC-SEKLEQWR--CE 141
Cdd:smart00263  81 SKLLDDDITDDVKCAKKIVSDQGIDAWVAWKNHCqGEDLSQWIrgCG 127
LYZ cd00119
C-type lysozyme and alpha-lactalbumin; C-type lysozyme (chicken or conventional type, 1, ...
 24-138 1.36e-45

C-type lysozyme and alpha-lactalbumin; C-type lysozyme (chicken or conventional type, 1,4-beta-N-acetylmuramidase) and alpha-lactalbumin (lactose synthase B protein, LA). They have a close evolutionary relationship and similar tertiary structure, however, functionally they are quite different. Lysozymes have primarily bacteriolytic function; hydrolysis of peptidoglycans of prokaryotic cell walls and transglycosylation. LA is a calcium-binding metalloprotein that is expressed exclusively in the mammary gland during lactation. LA is the regulatory subunit of the enzyme lactose synthase. The association of LA with the catalytic component of lactose synthase, galactosyltransferase, alters the acceptor substrate specificity of this glycosyltransferase, facilitating biosynthesis of lactose. Some lysozymes have evolved into digestive enzymes, both in mammals and invertebrates.


Pssm-ID: 340357  Cd Length: 122  Bit Score: 144.63  E-value: 1.36e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568991519  24 TKCKVSHAIKDIDGYQGISLLEWACVLFHTSGYDTQAVV-NDNGSTEYGLFQISDRFWCKSSEFPESENICGISCDKLLD 102
Cdd:cd00119    4 TRCELARLLKDIGGYGGISLPNWVCLMKHESGYDTQATNeNNNGSTDYGLFQINSRYWCKDGQTPGARNICDISCSKLLT 83

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 568991519 103 DELDDDIACAKKILAIKGIDYWKAYKPMCSEKLEQW 138
Cdd:cd00119   84 DDITDAIMCAKKIVDDKGIDAWVAWKNHCQNKLRQY 119
LYZ_C cd16897
C-type lysozyme; C-type lysozyme (chicken or conventional type; 1, 4-beta-N-acetylmuramidase). ...
 23-138 1.56e-28

C-type lysozyme; C-type lysozyme (chicken or conventional type; 1, 4-beta-N-acetylmuramidase). In humans, lysozyme is found in a wide variety of tissue types and body fluids. It has bacteriolytic properties through the hydolysis of beta-1,4, glyocosidic linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan, as well as between N-acetyl-D-glucosamine residues in chitodextrins. This family also includes digestive stomach lysozyme, which allow ruminants to digest bacteria in the foregut. The mammalian enzyme is related to lysozyme found hen egg-whites and related species.


Pssm-ID: 340383  Cd Length: 126  Bit Score: 101.19  E-value: 1.56e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568991519  23 LTKCKVSHAIKD--IDGYQGISLLEWACVLFHTSGYDTQAVV-NDNGSTEYGLFQISDRFWCKSSEFPeSENICGISCDK 99
Cdd:cd16897    3 FSRCELARILKRggLDGYRGYSLANWVCLAYYESGFNTRATNeNPDGSTDYGIFQINSRYWCNDGKTP-SKNLCHISCSD 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 568991519 100 LLDDELDDDIACAKKILA-IKGIDYWKAYKPMCSEK-LEQW 138
Cdd:cd16897   82 LLNDDITDDIKCAKKIVKdPQGMGAWVAWRLHCEGRdLSRW 122
LYZ_C_invert cd16899
C-type invertebrate lysozyme; C-type lysozyme proteins of invertebrates, including digestive ...
 46-134 1.09e-20

C-type invertebrate lysozyme; C-type lysozyme proteins of invertebrates, including digestive lysozymes 1 and 2 from Musca domestica, which aid in the use of bacteria as a food source. These lysozymes have high expression in the gut and optimal lytic activity at a lower pH. Other lysozymes in this subfamily have immunological roles. e.g. Anopheles gambiae has eight lysozymes, most of which seem to have immunological roles, those some may function as digestive enzymes in larvae. C-type lysozyme (chicken or conventional type; 1, 4-beta-N-acetylmuramidase) has bacteriolytic properties through the hydolysis of beta-1,4, glyocosidic linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan, as well as between N-acetyl-D-glucosamine residues in chitodextrins.


Pssm-ID: 381618 [Multi-domain]  Cd Length: 121  Bit Score: 81.12  E-value: 1.09e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568991519  46 WACVLFHTSGYDTQAV--VNDNGSTEYGLFQISDRFWCKSSEfpESENICGISCDKLLDDELDDDIACAKKILAIKGIDY 123
Cdd:cd16899   25 WVCLAEHESSFNTTAVggPNSDGSGDYGLFQINDKYWCSPGG--GSGNGCNVKCEDLLDDDISDDVKCAKKIYKEQGFNA 102

                         90
                 ....*....|.
gi 568991519 124 WKAYKPMCSEK 134
Cdd:cd16899  103 WVGWKNKCKGK 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH