|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
69-425 |
3.85e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 3.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 69 ELSALIEEKCKLLDKVSIVQK---EYEGLESSLKEASFEKESTEAQSLEATYENLEQSKSKLEDEILLLEEKLEEERAKH 145
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREkaeRYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 146 SEQDELMADISKRIQSL-EDESKSLKSQVAEakttfriFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVND 224
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDLgEEEQLRVKEKIGE-------LEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 225 LDKQKVALEESRAQAEQALSEKESQIETLVtsllkmkdwaAVLGEADdgnldldmksglENTAALDNQPKGALKKLiyaA 304
Cdd:TIGR02169 341 LEREIEEERKRRDKLTEEYAELKEELEDLR----------AELEEVD------------KEFAETRDELKDYREKL---E 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 305 KLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHRkl 384
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD-- 473
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 568979261 385 tveenyrleKEEKLSKVDEKISHATEELETCRQRAKDLEEE 425
Cdd:TIGR02169 474 ---------LKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
150-426 |
3.96e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 3.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 150 ELMADISKRIQSLEDESKSLKSQVAEAKTTfrifeinEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQK 229
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKE-------LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 230 VALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEADDgnlDLDMKSGLENTAALDNQPKgalkkliyaaklnas 309
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD---ELRAELTLLNEEAANLRER--------------- 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 310 LKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITE---LYQENEMKLHRKLTV 386
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEalaLLRSELEELSEELRE 905
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 568979261 387 EENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEEL 426
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
52-415 |
1.04e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 52 RSIRSRFYVGREKKLALELSAL-IEEKcklldkvsivQKEYEGLESSLKEASFEKESTEAQsLEATYENLEQsksklede 130
Cdd:TIGR02168 211 KAERYKELKAELRELELALLVLrLEEL----------REELEELQEELKEAEEELEELTAE-LQELEEKLEE-------- 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 131 illleekleeERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQ 210
Cdd:TIGR02168 272 ----------LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 211 LLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLgEADDGNLDLDMKSGLENTAALD 290
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL-NNEIERLEARLERLEDRRERLQ 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 291 NQPKGALKKLiyaakLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVIT 370
Cdd:TIGR02168 421 QEIEELLKKL-----EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 568979261 371 ELyQENEMKLHRKLTVEENYRLEKEEKLSKVDEKIShATEELETC 415
Cdd:TIGR02168 496 RL-QENLEGFSEGVKALLKNQSGLSGILGVLSELIS-VDEGYEAA 538
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
64-430 |
2.50e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 67.35 E-value: 2.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 64 KKLALELSALIEEKCKLLDK-----VSIVQKEYEGLESSLK--EASFEKESTEAQSLEATYENLEQSKSKledeilllee 136
Cdd:TIGR04523 291 NQLKSEISDLNNQKEQDWNKelkseLKNQEKKLEEIQNQISqnNKIISQLNEQISQLKKELTNSESENSE---------- 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 137 KLEEERAKHSEqdelMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETE 216
Cdd:TIGR04523 361 KQRELEEKQNE----IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETII 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 217 MMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMK-DWAAVLGEADDGNLDLDMKSglENTAALDNQPKg 295
Cdd:TIGR04523 437 KNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKqNLEQKQKELKSKEKELKKLN--EEKKELEEKVK- 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 296 ALKKLIyaAKLNASLKALEGERNQVYTQLS----EVDQVKEDLT------------EHIKSLESKQASLQSEKTEFEses 359
Cdd:TIGR04523 514 DLTKKI--SSLKEKIEKLESEKKEKESKISdledELNKDDFELKkenlekeideknKEIEELKQTQKSLKKKQEEKQ--- 588
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568979261 360 QKLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEE--KLSKVDEKISHATEELEtcrQRAKDLEEELERTI 430
Cdd:TIGR04523 589 ELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEneKLSSIIKNIKSKKNKLK---QEVKQIKETIKEIR 658
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
59-484 |
1.08e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.04 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 59 YVGREKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQS------LEATYENLEQSKSKLEDEIL 132
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQnkikkqLSEKQKELEQNNKKIKELEK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 133 LLEEKLEEERA-KHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTfrIFEINEE--RLKGAIKDALNENS----QLQ 205
Cdd:TIGR04523 289 QLNQLKSEISDlNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKI--ISQLNEQisQLKKELTNSESENSekqrELE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 206 ESQKQL----------LQETEMMKEQVNDL-------DKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLg 268
Cdd:TIGR04523 367 EKQNEIeklkkenqsyKQEIKNLESQINDLeskiqnqEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDL- 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 269 EADDGNLDLDMKSgLENTAALDNQPKGALKKLIYAAKLNasLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASL 348
Cdd:TIGR04523 446 TNQDSVKELIIKN-LDNTRESLETQLKVLSRSINKIKQN--LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 349 QSEKTEFESESQKLQQKLKVItelyqENEMKlhrKLTVEENYRLEKEEKLSKvDEKIS---HATEELETCRQRAKDLEEE 425
Cdd:TIGR04523 523 KEKIEKLESEKKEKESKISDL-----EDELN---KDDFELKKENLEKEIDEK-NKEIEelkQTQKSLKKKQEEKQELIDQ 593
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 568979261 426 LERTIHSYQGQVISHEKKAhdnwlaaRTLERNLNDLRKENAHNRQKLTETEFKFELLEK 484
Cdd:TIGR04523 594 KEKEKKDLIKEIEEKEKKI-------SSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
154-484 |
1.17e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.04 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 154 DISKRIQSLEDESKSLKSQVAEAKTTfrIFEINEERLKGAIKdaLNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALE 233
Cdd:TIGR04523 163 DLKKQKEELENELNLLEKEKLNIQKN--IDKIKNKLLKLELL--LSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 234 ESRAQAEQALSEKESQIETLVTSLLKMKDwaavlgEADDGNLDLDMKSG-LENTAALDNQPKGALKKL------IYAAKL 306
Cdd:TIGR04523 239 QEINEKTTEISNTQTQLNQLKDEQNKIKK------QLSEKQKELEQNNKkIKELEKQLNQLKSEISDLnnqkeqDWNKEL 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 307 NASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITElyqENEMKLhrkltv 386
Cdd:TIGR04523 313 KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKK---ENQSYK------ 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 387 EENYRLEKEeklskvdekishaTEELETCRQRAKDLEEELERTIHSYQGQVISHEKKaHDNWLAARTLERN-LNDLRKEN 465
Cdd:TIGR04523 384 QEIKNLESQ-------------INDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE-IERLKETIIKNNSeIKDLTNQD 449
|
330
....*....|....*....
gi 568979261 466 AHNRQKLTETEFKFELLEK 484
Cdd:TIGR04523 450 SVKELIIKNLDNTRESLET 468
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
188-430 |
2.97e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.86 E-value: 2.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 188 ERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVL 267
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 268 geaddgnLDLDMKSGLENTAAL---DNQPKGALKKLIYAAKLNASLKAlegernqvytQLSEVDQVKEDLTEHIKSLESK 344
Cdd:COG4942 110 -------LRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARRE----------QAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 345 QASLQSEKTEFESESQKLQQKLKvitelyqenemklhrkltveenyrlEKEEKLSKVDEKISHATEELETCRQRAKDLEE 424
Cdd:COG4942 173 RAELEALLAELEEERAALEALKA-------------------------ERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
....*.
gi 568979261 425 ELERTI 430
Cdd:COG4942 228 LIARLE 233
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-428 |
4.68e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 4.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 56 SRFYVGRE-KKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQS--LEATYENLEQSKSKLEDEIL 132
Cdd:TIGR02168 671 SILERRREiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsaLRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 133 LLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFrifEINEERLkgaikDALN-ENSQLQESQKQL 211
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL---KALREAL-----DELRaELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 212 LQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLlkmkdwaavlgeaddgnldldmksglentaaldn 291
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI---------------------------------- 868
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 292 qpkgalkkliyaAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKqaslqseKTEFESESQKLQQKLKVITE 371
Cdd:TIGR02168 869 ------------EELESELEALLNERASLEEALALLRSELEELSEELRELESK-------RSELRRELEELREKLAQLEL 929
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 568979261 372 LYQENEMKLHRKL-TVEENYRLEKEEklskVDEKISHATEELETCRQRAKDLEEELER 428
Cdd:TIGR02168 930 RLEGLEVRIDNLQeRLSEEYSLTLEE----AEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
142-472 |
7.11e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 7.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 142 RAKHSEQDELMADIS-KRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKE 220
Cdd:TIGR02168 216 KELKAELRELELALLvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 221 QVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKdwaavlgeaddgnldldmksglENTAALDNQPKGALKKL 300
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA----------------------EELAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 301 iyaAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKL 380
Cdd:TIGR02168 354 ---ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 381 hrkltvEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLE---EELERTIHSYQGQVISHEKKAHdnwlAARTLERN 457
Cdd:TIGR02168 431 ------EEAELKELQAELEELEEELEELQEELERLEEALEELReelEEAEQALDAAERELAQLQARLD----SLERLQEN 500
|
330
....*....|....*...
gi 568979261 458 LNDLR---KENAHNRQKL 472
Cdd:TIGR02168 501 LEGFSegvKALLKNQSGL 518
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
188-377 |
4.29e-09 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 59.07 E-value: 4.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 188 ERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTsllKMKDWAAVL 267
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE---ELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 268 GEADDGNLDLDMKSGLENTA-ALDNQpkGALKKLiyAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQA 346
Cdd:COG3883 96 YRSGGSVSYLDVLLGSESFSdFLDRL--SALSKI--ADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190
....*....|....*....|....*....|.
gi 568979261 347 SLQSEKTEFESESQKLQQKLKVITELYQENE 377
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELE 202
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
55-463 |
8.19e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.21 E-value: 8.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 55 RSRFYVGREKKLAlelsALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEATYENLEQSKSKLEDEILLL 134
Cdd:pfam02463 164 GSRLKRKKKEALK----KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 135 EEKLEEERAKHSEQDELMADISKRIQSLED-------ESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQES 207
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEKEEEKLAQvlkenkeEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 208 QKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDmkSGLENTA 287
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA--KLKEEEL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 288 ALDNQPKGALKKLIYAAKLNASLkaLEGERNQVYTQLSEVDQVKEDLTEHI---KSLESKQASLQSEKTEFESESQKLQQ 364
Cdd:pfam02463 398 ELKSEEEKEAQLLLELARQLEDL--LKEEKKEELEILEEEEESIELKQGKLteeKEELEKQELKLLKDELELKKSEDLLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 365 KLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVD-EKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKK 443
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLaLIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
410 420
....*....|....*....|
gi 568979261 444 AHDNWLAARTLERNLNDLRK 463
Cdd:pfam02463 556 TADEVEERQKLVRALTELPL 575
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
62-343 |
1.04e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 62 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQsLEATYENLEQSKSKLEDEILLLEEKLEEE 141
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ-IEQLKEELKALREALDELRAELTLLNEEA 819
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 142 RAKHSEQDEL---MADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMM 218
Cdd:TIGR02168 820 ANLRERLESLerrIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL 899
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 219 KEQVNDLDKQKVALE-------ESRAQAEQALSEKESQIETLVTSLlkmkdwaavlgeADDGNLDLDMKsgLENTAALDN 291
Cdd:TIGR02168 900 SEELRELESKRSELRreleelrEKLAQLELRLEGLEVRIDNLQERL------------SEEYSLTLEEA--EALENKIED 965
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 292 QPKGALKKLIyaaKLNASLKALeGERN--------QVYTQLSEVDQVKEDLTEHIKSLES 343
Cdd:TIGR02168 966 DEEEARRRLK---RLENKIKEL-GPVNlaaieeyeELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
63-485 |
4.54e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 4.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 63 EKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEATYENLEQSKSKLEDEILLLEEKLEEER 142
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 143 AKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKqllQETEMMKEQV 222
Cdd:PTZ00121 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK---ADEAKKAEEK 1545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 223 NDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKmkdwAAVLGEADDGNLDLDMKSGLENTAALDNQPKGALKKLIY 302
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK----AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 303 AAKlnasLKALEGERNQvytqlseVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKlhR 382
Cdd:PTZ00121 1622 AEE----LKKAEEEKKK-------VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE--K 1688
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 383 KltVEENYRLEKEEKlSKVDEKISHATEELETCRQRAKdleEELERTIHSYQGQVISHEKKAHDNWLAARTLERN----L 458
Cdd:PTZ00121 1689 K--AAEALKKEAEEA-KKAEELKKKEAEEKKKAEELKK---AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKkiahL 1762
|
410 420
....*....|....*....|....*..
gi 568979261 459 NDLRKENAHNRQKLTETEFKFELLEKD 485
Cdd:PTZ00121 1763 KKEEEKKAEEIRKEKEAVIEEELDEED 1789
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
78-464 |
4.93e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 56.65 E-value: 4.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 78 CKLLDKVSIVQKEYEGLESSLKEASFE--KESTEAQSLEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMA-- 153
Cdd:pfam05483 359 CSLEELLRTEQQRLEKNEDQLKIITMElqKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGke 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 154 -DISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVND----LDKQ 228
Cdd:pfam05483 439 qELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDmtleLKKH 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 229 KVALEESRAQAEQALSekesQIETLVTSLLKMKDwaavlgEADDGNLDLDMKsGLENTAALDNQPKGALKKLIYAAKLNA 308
Cdd:pfam05483 519 QEDIINCKKQEERMLK----QIENLEEKEMNLRD------ELESVREEFIQK-GDEVKCKLDKSEENARSIEYEVLKKEK 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 309 SLKALEGERNQVYTQLSEVDQVKEDLTEHIKSL------ESKQAS---LQSEKTEFESESQKlqQKLKVITELYQEnemK 379
Cdd:pfam05483 588 QMKILENKCNNLKKQIENKNKNIEELHQENKALkkkgsaENKQLNayeIKVNKLELELASAK--QKFEEIIDNYQK---E 662
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 380 LHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSY-------QGQVISHEKKAHDNWLAAR 452
Cdd:pfam05483 663 IEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYdkiieerDSELGLYKNKEQEQSSAKA 742
|
410
....*....|..
gi 568979261 453 TLERNLNDLRKE 464
Cdd:pfam05483 743 ALEIELSNIKAE 754
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
52-371 |
5.36e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 56.98 E-value: 5.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 52 RSIRSRFYVGREKKLALELSALI--------EEKCKLLDKVSIVQKEYEGLESslkeasfekesTEAQSLEATYENLEQS 123
Cdd:TIGR01612 662 KSELSKIYEDDIDALYNELSSIVkenaidntEDKAKLDDLKSKIDKEYDKIQN-----------METATVELHLSNIENK 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 124 KSKLEdeillleekleeerakhseqdELMADISKRIQSleDESKSLKSQVAEakttfriFEINEERLKGAIKDALNENSQ 203
Cdd:TIGR01612 731 KNELL---------------------DIIVEIKKHIHG--EINKDLNKILED-------FKNKEKELSNKINDYAKEKDE 780
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 204 LQESQKQLLQETEMMKEQVNdLDKQKValEESRAQAEQA------LSEKESQIETLVTSLLKMKDwaAVLGEAD-----D 272
Cdd:TIGR01612 781 LNKYKSKISEIKNHYNDQIN-IDNIKD--EDAKQNYDKSkeyiktISIKEDEIFKIINEMKFMKD--DFLNKVDkfinfE 855
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 273 GNLDLDMKSGLENTAALDNQPKGAL--KKL-IYAAKLNAS-------LKALEGERNQVYTqLSEVD---QVKEDLTEHIK 339
Cdd:TIGR01612 856 NNCKEKIDSEHEQFAELTNKIKAEIsdDKLnDYEKKFNDSkslineiNKSIEEEYQNINT-LKKVDeyiKICENTKESIE 934
|
330 340 350
....*....|....*....|....*....|..
gi 568979261 340 SLESKQASLQsektefesesQKLQQKLKVITE 371
Cdd:TIGR01612 935 KFHNKQNILK----------EILNKNIDTIKE 956
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
69-427 |
1.12e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.43 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 69 ELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKE--STEAQSLEATYENLEQSKSkledeillleekleeERAKHS 146
Cdd:PRK02224 238 EADEVLEEHEERREELETLEAEIEDLRETIAETEREREelAEEVRDLRERLEELEEERD---------------DLLAEA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 147 EQDELMAD-ISKRIQSLEDESKSLKSQVAEAKTtfrifeineerlkgAIKDALNENSQLQESQKQLLQETEMMKEQVNDL 225
Cdd:PRK02224 303 GLDDADAEaVEARREELEDRDEELRDRLEECRV--------------AAQAHNEEAESLREDADDLEERAEELREEAAEL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 226 DKQKVALEESRAQAEQALSEKESQIETLVTSLlkmKDWAAVLGEADDGNLDLdmksgLENTAALDNQpkgalkkliyAAK 305
Cdd:PRK02224 369 ESELEEAREAVEDRREEIEELEEEIEELRERF---GDAPVDLGNAEDFLEEL-----REERDELRER----------EAE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 306 LNASLKALEGERNQVYT---------------------QLSEVDQVKEDLTEHIKSLESKQASLQS------EKTEFESE 358
Cdd:PRK02224 431 LEATLRTARERVEEAEAlleagkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEErleraeDLVEAEDR 510
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568979261 359 SQKLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHAT---EELETCRQRAKDLEEELE 427
Cdd:PRK02224 511 IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAeaeEEAEEAREEVAELNSKLA 582
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
73-484 |
1.44e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 73 LIEEKCKLLDKVSIVQKEYEGLESSLKEaSFEKESTEAQSLEATYENLEQSKSKLEDEILLLEEKLeeerAKHSEQDELM 152
Cdd:PRK03918 194 LIKEKEKELEEVLREINEISSELPELRE-ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE----EKIRELEERI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 153 ADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGA--IKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKV 230
Cdd:PRK03918 269 EELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELreIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 231 ALE------ESRAQAEQALSEKESQIETLVTSL--LKMKDWAAVLGEADdgnldldmKSGLENTAALDN--QPKGALKKL 300
Cdd:PRK03918 349 ELEkrleelEERHELYEEAKAKKEELERLKKRLtgLTPEKLEKELEELE--------KAKEEIEEEISKitARIGELKKE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 301 IyaAKLNASLKALEGERNQVYTQLSEVDQvkEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVItELYQENEMKL 380
Cdd:PRK03918 421 I--KELKKAIEELKKAKGKCPVCGRELTE--EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL-EKVLKKESEL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 381 HRKLTVEENYRlEKEEKLSKVD-EKISHATEELETCRQRAKDLEEELERtihsyqgqVISHEKKAHDNWLAARTLERNLN 459
Cdd:PRK03918 496 IKLKELAEQLK-ELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKS--------LKKELEKLEELKKKLAELEKKLD 566
|
410 420
....*....|....*....|....*.
gi 568979261 460 DLRKENAHNRQKLTETEFK-FELLEK 484
Cdd:PRK03918 567 ELEEELAELLKELEELGFEsVEELEE 592
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
67-366 |
1.67e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 1.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 67 ALELSALIEEK--CKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQ--SLEATYENLEQSkskledeillleekLEEER 142
Cdd:COG1196 215 YRELKEELKELeaELLLLKLRELEAELEELEAELEELEAELEELEAElaELEAELEELRLE--------------LEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 143 AKHSEQDELMADISKRIQSLEDESKSLKSQVAEAkttfrifEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQV 222
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRREL-------EERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 223 NDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDwAAVLGEADDGNLDLDMKSGLENTAALDNQpkgalkkliy 302
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR-AAAELAAQLEELEEAEEALLERLERLEEE---------- 422
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568979261 303 AAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKL 366
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
66-367 |
2.04e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 66 LALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQ--SLEATYENLEQSKSklEDEILLLEEKLEEERA 143
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDlhKLEEALNDLEARLS--HSRIPEIQAELSKLEE 805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 144 KHSEQDELMADISKRIQS-------LEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETE 216
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRltlekeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 217 MMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLlkmkdwAAVLGEADDgnLDLDMKSGLENTAALDNQPKGA 296
Cdd:TIGR02169 886 DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL------EALEEELSE--IEDPKGEDEEIPEEELSLEDVQ 957
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568979261 297 LKKLiyaaKLNASLKALEGERNQVytqLSEVDQVKEDLTEhiksLESKQASLQSEKTEFESESQKLQQKLK 367
Cdd:TIGR02169 958 AELQ----RVEEEIRALEPVNMLA---IQEYEEVLKRLDE----LKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
66-485 |
3.05e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 66 LALELSALIEEKCKLL----DKVSIVQKEYEGLESSLKEA-----SFEKESTEAQSLEATYENLEQSKSKLEDEILLLEE 136
Cdd:COG4717 44 RAMLLERLEKEADELFkpqgRKPELNLKELKELEEELKEAeekeeEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 137 KLeeeraKHSEQDELMADISKRIQSLEDESKSLKSQVAEakttfrifeinEERLKGAIKDALNENSQLQESQKQLLQET- 215
Cdd:COG4717 124 LL-----QLLPLYQELEALEAELAELPERLEELEERLEE-----------LRELEEELEELEAELAELQEELEELLEQLs 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 216 EMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETL---VTSLLKMKDWAAVLGEADDGNLDLDMKSGLENTAALDNQ 292
Cdd:COG4717 188 LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELeeeLEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGS 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 293 PKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQK--LQQKLKVIT 370
Cdd:COG4717 268 LLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPeeLLELLDRIE 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 371 ELYQENE--MKLHRKLTVEEnYRLEKEEKLSKVDekishaTEELETCRQRAKDLEE--ELERTIHSYQGQVISHEKKAHD 446
Cdd:COG4717 348 ELQELLReaEELEEELQLEE-LEQEIAALLAEAG------VEDEEELRAALEQAEEyqELKEELEELEEQLEELLGELEE 420
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568979261 447 NWLAA---------RTLERNLNDLRKENAHNRQKLTETEFKFELLEKD 485
Cdd:COG4717 421 LLEALdeeeleeelEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
62-488 |
5.31e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.19 E-value: 5.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 62 REKKLALELSALIEEKCKLLDKVSIvqkeyegLESSLKEASFEKESTEAQSleatyENLEQSKSKLEDEILLLEEKLEEE 141
Cdd:pfam05483 238 KEKQVSLLLIQITEKENKMKDLTFL-------LEESRDKANQLEEKTKLQD-----ENLKELIEKKDHLTKELEDIKMSL 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 142 RAKHSEQDELMADI---SKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMm 218
Cdd:pfam05483 306 QRSMSTQKALEEDLqiaTKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITM- 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 219 keqvnDLDKQKVALEEsraqAEQALSEKESQIETLVTSLlkmkdwaavlgeADDGNLdLDMKSGLENTAaldNQPKGALK 298
Cdd:pfam05483 385 -----ELQKKSSELEE----MTKFKNNKEVELEELKKIL------------AEDEKL-LDEKKQFEKIA---EELKGKEQ 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 299 KLIYAaklnasLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITElyQENEM 378
Cdd:pfam05483 440 ELIFL------LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQ--EASDM 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 379 KLHRKLTVEENYRLEKEE-----KLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAART 453
Cdd:pfam05483 512 TLELKKHQEDIINCKKQEermlkQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKI 591
|
410 420 430
....*....|....*....|....*....|....*
gi 568979261 454 LERNLNDLRKENAHNRQKLTETEFKFELLEKDPYA 488
Cdd:pfam05483 592 LENKCNNLKKQIENKNKNIEELHQENKALKKKGSA 626
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
219-434 |
6.25e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 6.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 219 KEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLkmkDWAAVLGEADDgnlDLDMKSGLENTAALDNQpkgaLK 298
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERRE---ALQRLAEYSWD---EIDVASAEREIAELEAE----LE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 299 KLIyaaKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEktefesesqklQQKLKVITELYQENEM 378
Cdd:COG4913 679 RLD---ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE-----------LDELQDRLEAAEDLAR 744
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568979261 379 KLHRKLTVEENYRLEKEEKLSKVDEKIshaTEELETCRQRAKDLEEELERTIHSYQ 434
Cdd:COG4913 745 LELRALLEERFAAALGDAVERELRENL---EERIDALRARLNRAEEELERAMRAFN 797
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
65-484 |
1.09e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 65 KLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKE-ASFEKESTEAQSLEATYENLEQSKSKLEDEILLLEEKLEEERA 143
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEElEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 144 KHSEQDELMADISK---RIQSLEDESKSLKSQVAEAKTTFRIFEineerlkgaikDALNENSQLQESQKQLLQET-EMMK 219
Cdd:PRK03918 322 EINGIEERIKELEEkeeRLEELKKKLKELEKRLEELEERHELYE-----------EAKAKKEELERLKKRLTGLTpEKLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 220 EQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAV-------LGEADDGNL----DLDMKSGLENTAA 288
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgreLTEEHRKELleeyTAELKRIEKELKE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 289 LDNQPKgalkkliyaaKLNASLKALEGERNQVYTQLSEvdqvkEDLTEHIKSLESKQASLQSEK-----TEFE---SESQ 360
Cdd:PRK03918 471 IEEKER----------KLRKELRELEKVLKKESELIKL-----KELAEQLKELEEKLKKYNLEElekkaEEYEklkEKLI 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 361 KLQQKLKVI-TELYQENEMKlhRKLTVEENYRLEKEEKLSKVDEKIshateeletcRQRAKDLEEELERTIHSYqgqvis 439
Cdd:PRK03918 536 KLKGEIKSLkKELEKLEELK--KKLAELEKKLDELEEELAELLKEL----------EELGFESVEELEERLKEL------ 597
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 568979261 440 heKKAHDNWLAA-------RTLERNLNDLRKENAHNRQKLTETEFKFELLEK 484
Cdd:PRK03918 598 --EPFYNEYLELkdaekelEREEKELKKLEEELDKAFEELAETEKRLEELRK 647
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
61-427 |
1.28e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 61 GREKKLALELSALiEEKCKLLDKVSIVQKEYEGLESSLKEASFEKesteaqsLEATYENLEQSKskledeillleeklee 140
Cdd:PRK03918 345 KKLKELEKRLEEL-EERHELYEEAKAKKEELERLKKRLTGLTPEK-------LEKELEELEKAK---------------- 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 141 erakhseqDELMADISK---RIQSLEDESKSLKSQVAEAKTTFRIF-----EINEE-------RLKGAIKDALNENSQLQ 205
Cdd:PRK03918 401 --------EEIEEEISKitaRIGELKKEIKELKKAIEELKKAKGKCpvcgrELTEEhrkelleEYTAELKRIEKELKEIE 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 206 ESQKQL---LQETEMMKEQVNDLDKQKVALEESRAQAE-------QALSEKESQIETLVTSLLKMKdwaavlGEADDGNL 275
Cdd:PRK03918 473 EKERKLrkeLRELEKVLKKESELIKLKELAEQLKELEEklkkynlEELEKKAEEYEKLKEKLIKLK------GEIKSLKK 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 276 DLDMKSGLEntaaldnqpkgalKKLiyaAKLNASLKALEGERNQVYTQLSE-----VDQVKEDLTE-------------H 337
Cdd:PRK03918 547 ELEKLEELK-------------KKL---AELEKKLDELEEELAELLKELEElgfesVEELEERLKElepfyneylelkdA 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 338 IKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEmKLHRKLTVEE-----NYRLEKEEKLSKVDEKISHATEEL 412
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE-ELEKKYSEEEyeelrEEYLELSRELAGLRAELEELEKRR 689
|
410
....*....|....*
gi 568979261 413 ETCRQRAKDLEEELE 427
Cdd:PRK03918 690 EEIKKTLEKLKEELE 704
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
63-480 |
1.44e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 63 EKKLALELSALIEEKCKLLDKVSIVQKEYEGL---ESSLKEASFEKESTEAQSLEATYENLEQSKSKLEDEILLLEEKLE 139
Cdd:PTZ00121 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKkkeEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 140 EERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGaikDALNENSQLQESQKQLLQETEMMK 219
Cdd:PTZ00121 1420 ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA---DEAKKKAEEAKKADEAKKKAEEAK 1496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 220 EQVNDLDKQkvalEESRAQAEQALSEKEsqietlvtsllkmKDWAAVLGEADDGNLDLDMKSGLENTAALDNQPKGALKK 299
Cdd:PTZ00121 1497 KKADEAKKA----AEAKKKADEAKKAEE-------------AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK 1559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 300 LIYAAKLNASLKAlEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKvitelYQENEMK 379
Cdd:PTZ00121 1560 AEEKKKAEEAKKA-EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK-----KAEEEKK 1633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 380 LHRKLTVEENYRLEKEEKLSKVDEKISHATEEL----ETCRQRAKDL--EEELERTIHSYQGQVISHEKKAHDNWLAART 453
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEakkaEEDKKKAEEAkkAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713
|
410 420
....*....|....*....|....*..
gi 568979261 454 LERNLNDLRKENAHNRQKLTETEFKFE 480
Cdd:PTZ00121 1714 EKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
55-464 |
3.53e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 3.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 55 RSRFYVGREKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLK--EASFEKESTEAQSLEATYENLEQSKSKLEDEIL 132
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEeaEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 133 LLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLL 212
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 213 QETEMMKEQVNDLDkQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDW---------------------AAVLGEAD 271
Cdd:COG1196 470 EEAALLEAALAELL-EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavavligveaayeaalEAALAAAL 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 272 DGNLDLDMKSGLENTAALDNQPKGALKKL--------------------IYAAKLNASLKALEGERNQVYTQLSEVDQ-- 329
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkiraraalaaalargaiGAAVDLVASDLREADARYYVLGDTLLGRTlv 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 330 -----------VKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHRKLTVEENYRL-EKEEK 397
Cdd:COG1196 629 aarleaalrraVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEeEEERE 708
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568979261 398 LSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKE 464
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
149-427 |
3.95e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 3.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 149 DELMADISKRIQSLEDESKSLKSQVAEAKTTFRifEINEerlkgaIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQ 228
Cdd:PRK03918 175 KRRIERLEKFIKRTENIEELIKEKEKELEEVLR--EINE------ISSELPELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 229 KVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEaddgnldldMKSGLENTAALDNQPKGALKKLiyaAKLNA 308
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE---------LKEKAEEYIKLSEFYEEYLDEL---REIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 309 SLKALEGERNQVYTQLSEVDQVK---EDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHRKLT 385
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEKEerlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELE 394
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568979261 386 VEENYRLEKEEKLSKVDEKIShateELETCRQRAKDLEEELE 427
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIG----ELKKEIKELKKAIEELK 432
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
61-411 |
4.13e-06 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 50.34 E-value: 4.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 61 GREKKLALELSALIEEKCKLLDKVSIVQKEYE----GLESSLKEASFEKESTEA--QSLEATYENLEQSKSKLEDEILLL 134
Cdd:COG5185 180 EIFGLTLGLLKGISELKKAEPSGTVNSIKESEtgnlGSESTLLEKAKEIINIEEalKGFQDPESELEDLAQTSDKLEKLV 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 135 EEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEE--------RLKGAIKDALNE-NSQLQ 205
Cdd:COG5185 260 EQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESleeqlaaaEAEQELEESKREtETGIQ 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 206 ESQKQLLQETEMMKEQVNDLDKQK--VALEESRAQAEQALSEKESQIETLVTSLL-KMKDWAAVLGEADDgNLDLDMKSG 282
Cdd:COG5185 340 NLTAEIEQGQESLTENLEAIKEEIenIVGEVELSKSSEELDSFKDTIESTKESLDeIPQNQRGYAQEILA-TLEDTLKAA 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 283 LENTAALDNQPKGALKKLIYAAKLnasLKALEGERNQVYTQLSevDQVKEDLTEHIKSLESkqaSLQSEKTEFESESQKL 362
Cdd:COG5185 419 DRQIEELQRQIEQATSSNEEVSKL---LNELISELNKVMREAD--EESQSRLEEAYDEINR---SVRSKKEDLNEELTQI 490
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 568979261 363 QQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKL--SKVDEKISHATEE 411
Cdd:COG5185 491 ESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLkdFMRARGYAHILAL 541
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
311-428 |
4.92e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.24 E-value: 4.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 311 KALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFEsesQKLQQKLKVITELyqENEMKLHRKltvEENY 390
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELE---AELEEKDERIERL--ERELSEARS---EERR 459
|
90 100 110
....*....|....*....|....*....|....*...
gi 568979261 391 RLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELER 428
Cdd:COG2433 460 EIRKDREISRLDREIERLERELEEERERIEELKRKLER 497
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
62-490 |
1.02e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 62 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQ--SLEATYENLEQSKSKLEDEILLLEEKLE 139
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAElaEAEEALLEAEAELAEAEEELEELAEELL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 140 EERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEmmk 219
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA--- 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 220 eqvndldkQKVALEESRAQAEQALSEKESQIETLVTSLLKMK--------DWAAVLGEAD----DGNLDLDMKSGLENTA 287
Cdd:COG1196 467 --------ELLEEAALLEAALAELLEELAEAAARLLLLLEAEadyegfleGVKAALLLAGlrglAGAVAVLIGVEAAYEA 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 288 ALDNQPKGALKKLIY-----AAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKL 362
Cdd:COG1196 539 ALEAALAAALQNIVVeddevAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 363 QQKLKVITELYQENEMKLHRKLTVEENYRLEKEEK--LSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISH 440
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGegGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA 698
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 568979261 441 EKKAHDNWLAARTLERNLNDLRKENAHNRQKLTETEFKFELLEKDPYALD 490
Cdd:COG1196 699 LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
185-485 |
1.46e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.47 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 185 INEERLKGaikdaLNENSQLQESQKQLLQEtemmkeqvnDLDKQKVALEESRAQAEQALSEKESQIETLVTsllKMKDWA 264
Cdd:PHA02562 171 LNKDKIRE-----LNQQIQTLDMKIDHIQQ---------QIKTYNKNIEEQRKKNGENIARKQNKYDELVE---EAKTIK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 265 AVLGEADDGNLDLDMKSGlentaaldnQPKGALKKL-IYAAKLNASLKALEGERNqVYTQLSEVDQVKEDLTEHIKSLES 343
Cdd:PHA02562 234 AEIEELTDELLNLVMDIE---------DPSAALNKLnTAAAKIKSKIEQFQKVIK-MYEKGGVCPTCTQQISEGPDRITK 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 344 KQASLQSEKTEFESESQKlQQKLKVITELYQENEMKLHrkltveenyrlEKEEKLSKVDEKIShateeleTCRQRAKDLE 423
Cdd:PHA02562 304 IKDKLKELQHSLEKLDTA-IDELEEIMDEFNEQSKKLL-----------ELKNKISTNKQSLI-------TLVDKAKKVK 364
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568979261 424 EELERTihsyQGQVISHEKkahdnwlAARTLERNLNDLRKENAHNRQKLTETEFKFELLeKD 485
Cdd:PHA02562 365 AAIEEL----QAEFVDNAE-------ELAKLQDELDKIVKTKSELVKEKYHRGIVTDLL-KD 414
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
152-375 |
2.32e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 152 MADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINeerlkgaikdalNENSQLQESQKQLLQETEMMKEQVNDLDKQKVA 231
Cdd:COG3206 170 REEARKALEFLEEQLPELRKELEEAEAALEEFRQK------------NGLVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 232 LEESRAQAEQALSEKESQIETLVTSllkmkdwaAVLGEADDGNLDLDMKSGLENTAALDNQPKgalkkliyaaklnasLK 311
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQS--------PVIQQLRAQLAELEAELAELSARYTPNHPD---------------VI 294
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568979261 312 ALEGERNQVYTQL-SEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQE 375
Cdd:COG3206 295 ALRAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE 359
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
146-517 |
3.15e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 47.77 E-value: 3.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 146 SEQDELMADISKRIQSLEDESKslksqvaeAKTTFRIFEINEERLKGA-IKDALNENSQLQESQKQLLQETEMMKEQVND 224
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQKTIK--------REKKLRETEEVEFSLKAEvLIQKFGRSLKAKKRFSLLKKETIYLQSAQRV 877
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 225 LDKQKVALE-----ESRAQAEQALSEKESQIETLV----TSLLK--------MKDWAAVLGEADDGNlDLDMKSGLENTA 287
Cdd:COG5022 878 ELAERQLQElkidvKSISSLKLVNLELESEIIELKkslsSDLIEnlefktelIARLKKLLNNIDLEE-GPSIEYVKLPEL 956
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 288 ALDNQPKGALKKLiyAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLqSEKTEFESESQKLQQKLK 367
Cdd:COG5022 957 NKLHEVESKLKET--SEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQEST-KQLKELPVEVAELQSASK 1033
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 368 VI----TELYQENEM-KLHRKLTVEENYrLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEK 442
Cdd:COG5022 1034 IIssesTELSILKPLqKLKGLLLLENNQ-LQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPA 1112
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568979261 443 KAHDNWLAARTlerNLNDLRKENAHNRQKLTETEFKFELLEKDPYALDVPNTAFGREHSPYGPSPLGRPPSETRA 517
Cdd:COG5022 1113 NVLQFIVAQMI---KLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQ 1184
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
157-474 |
3.45e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 157 KRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENS---------------------------------- 202
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQelklkeqakkaleyyqlkekleleeeyllyldyl 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 203 QLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSG 282
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 283 LENTAALDNQPKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKL 362
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 363 QQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEK 442
Cdd:pfam02463 393 KEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
330 340 350
....*....|....*....|....*....|..
gi 568979261 443 KAHDNWLAARTLERNLNDLRKENAHNRQKLTE 474
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESK 504
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
155-259 |
3.50e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.08 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 155 ISKRIQSLEDESKSLKSQV---AEAKTTFRIFEINEE--RLKGAIKDALNE-NSQLQESQKQLLQETEMMKEQVNDLDKQ 228
Cdd:PRK12704 29 AEAKIKEAEEEAKRILEEAkkeAEAIKKEALLEAKEEihKLRNEFEKELRErRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110
....*....|....*....|....*....|....
gi 568979261 229 KVALEESR---AQAEQALSEKESQIETLVTSLLK 259
Cdd:PRK12704 109 EEELEKKEkelEQKQQELEKKEEELEELIEEQLQ 142
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
157-464 |
3.70e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 3.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 157 KRIQSLEDESKSLKSQVAEAKTTFrifeinEERLKGAIKDALNENSQLQESQKqllqETEMMKEQVNDLDKQKVALEESR 236
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMY------EDKIEELEKQLVLANSELTEART----ERDQFSQESGNLDDQLQKLLADL 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 237 AQAEQALSEKESQIETLvtsllkmkdWAAVLG----------EADDGNLDLDMKSGLenTAALDNQPKGALKKLIYAAK- 305
Cdd:pfam15921 387 HKREKELSLEKEQNKRL---------WDRDTGnsitidhlrrELDDRNMEVQRLEAL--LKAMKSECQGQMERQMAAIQg 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 306 LNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLhrklt 385
Cdd:pfam15921 456 KNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKL----- 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 386 vEENYRLEKEEklskvdEKISHATEELETCRQRAKDLE---EELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLR 462
Cdd:pfam15921 531 -QELQHLKNEG------DHLRNVQTECEALKLQMAEKDkviEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR 603
|
..
gi 568979261 463 KE 464
Cdd:pfam15921 604 LE 605
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
142-484 |
4.90e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 4.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 142 RAKHSEQDELMADISKRiqSLEDESKSLKSQVAEAKTtfRIFEI------NEERLKGAIKDALNENSQLQESQKQLLQET 215
Cdd:pfam01576 195 RLKKEEKGRQELEKAKR--KLEGESTDLQEQIAELQA--QIAELraqlakKEEELQAALARLEEETAQKNNALKKIRELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 216 EMMKEQVNDLDKQKVAleesRAQAEQALSEKESQIETLVTSLLKMKDWAAV---LGEADDGNLDLDMKSGLENTAALDNQ 292
Cdd:pfam01576 271 AQISELQEDLESERAA----RNKAEKQRRDLGEELEALKTELEDTLDTTAAqqeLRSKREQEVTELKKALEEETRSHEAQ 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 293 PKGALKKLIYA---------------AKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQS------- 350
Cdd:pfam01576 347 LQEMRQKHTQAleelteqleqakrnkANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQArlseser 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 351 EKTEFESESQKLQQKLKVITELYQENEMKLHrkltveenyRLEKEekLSKVDEKIsHATEEL--ETCRQ------RAKDL 422
Cdd:pfam01576 427 QRAELAEKLSKLQSELESVSSLLNEAEGKNI---------KLSKD--VSSLESQL-QDTQELlqEETRQklnlstRLRQL 494
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568979261 423 EEE-----------------LERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKENAHNRQKLTETEFKFELLEK 484
Cdd:pfam01576 495 EDErnslqeqleeeeeakrnVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEK 573
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
80-428 |
5.18e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 5.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 80 LLDKVSIVQKEYEGLESSLKEA--SFEKESTEAQSLEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMADISK 157
Cdd:PRK02224 312 VEARREELEDRDEELRDRLEECrvAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 158 RIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIK----------DALNENSQLQESQK-----QLLQETEMMkEQV 222
Cdd:PRK02224 392 EIEELRERFGDAPVDLGNAEDFLEELREERDELREREAeleatlrtarERVEEAEALLEAGKcpecgQPVEGSPHV-ETI 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 223 NDLDKQKVALEESRAQAEQALSEKESQIETLvTSLLKMKDWAAVLGEADDGNLDL--DMKSGLENTA-ALDNQPKGALKK 299
Cdd:PRK02224 471 EEDRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELiaERRETIEEKReRAEELRERAAEL 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 300 LIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLEsKQASLQSEKTEFESESQKLQQKLKVITELYQENEMK 379
Cdd:PRK02224 550 EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRER 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 380 L----HRKLTVEENY---RLEK--------EEKLSKVDEKISHATE-----------------ELETCRQRAKDLEEELE 427
Cdd:PRK02224 629 LaekrERKRELEAEFdeaRIEEaredkeraEEYLEQVEEKLDELREerddlqaeigaveneleELEELRERREALENRVE 708
|
.
gi 568979261 428 R 428
Cdd:PRK02224 709 A 709
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
157-485 |
1.06e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 157 KRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESr 236
Cdd:TIGR04523 54 KELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQ- 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 237 aqaeqaLSEKESQIETLVTSLLKMKDWAAVLGEADDgnlDLD-MKSGLENTaaldnqpKGALKKLIyaAKLNASLKALEG 315
Cdd:TIGR04523 133 ------KKENKKNIDKFLTEIKKKEKELEKLNNKYN---DLKkQKEELENE-------LNLLEKEK--LNIQKNIDKIKN 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 316 ERNQVYTQLSEVDQVKED---LTEHIKSLESKQASL-------QSEKTEFESESQKLQQKLKVITELYQENEMKLHRK-L 384
Cdd:TIGR04523 195 KLLKLELLLSNLKKKIQKnksLESQISELKKQNNQLkdniekkQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKqK 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 385 TVEENYRL--EKEEKLSKVDEKIShateELEtcRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLR 462
Cdd:TIGR04523 275 ELEQNNKKikELEKQLNQLKSEIS----DLN--NQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLK 348
|
330 340 350
....*....|....*....|....*....|
gi 568979261 463 KE-------NAHNRQKLTETEFKFELLEKD 485
Cdd:TIGR04523 349 KEltnseseNSEKQRELEEKQNEIEKLKKE 378
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
65-424 |
1.09e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 65 KLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKE--ASFEKESTEAQSLEATYENLEQSKSKLEDEILLLEEKLEEER 142
Cdd:PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDllAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 143 AKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFR-----IFEINEE--RLKGAIKDALNENSQLQESQKQLLQET 215
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAELESELEEAREAVEdrreeIEELEEEieELRERFGDAPVDLGNAEDFLEELREER 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 216 EMMKEQVNDLDKQKVALEESRAQAEQ---------------------ALSEKESQIETLVTSLLKMKDWAAvlgeaddgn 274
Cdd:PRK02224 422 DELREREAELEATLRTARERVEEAEAlleagkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVE--------- 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 275 ldldmksglentaaldnqpkgALKKLIYAAKlnaSLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTE 354
Cdd:PRK02224 493 ---------------------EVEERLERAE---DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568979261 355 FESESQklqQKLKVITELYQENEMKLHRKLTVEE-----NYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEE 424
Cdd:PRK02224 549 LEAEAE---EKREAAAEAEEEAEEAREEVAELNSklaelKERIESLERIRTLLAAIADAEDEIERLREKREALAE 620
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
69-486 |
1.16e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 69 ELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEATYENLEQSKSkleDEILLLEEKLEEERAKHSEQ 148
Cdd:pfam12128 355 ELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLA---VAEDDLQALESELREQLEAG 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 149 DELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQ 228
Cdd:pfam12128 432 KLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQA 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 229 KVALEESRAQAEQALSEKESQIETLVTSLLK-MKDWAAVLGEADDGNL----DLDmksglenTAALDNQPKGALKklIYA 303
Cdd:pfam12128 512 SRRLEERQSALDELELQLFPQAGTLLHFLRKeAPDWEQSIGKVISPELlhrtDLD-------PEVWDGSVGGELN--LYG 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 304 AKLNasLKALEGERNQVYTQL--SEVDQVKEDLtehiKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLH 381
Cdd:pfam12128 583 VKLD--LKRIDVPEWAASEEElrERLDKAEEAL----QSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLR 656
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 382 RKLTVEENYRLEKEEKLSkvdEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDL 461
Cdd:pfam12128 657 RLFDEKQSEKDKKNKALA---ERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLAL 733
|
410 420 430
....*....|....*....|....*....|..
gi 568979261 462 -------RKENAHNRQKLTETEFKFELLEKDP 486
Cdd:pfam12128 734 lkaaiaaRRSGAKAELKALETWYKRDLASLGV 765
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
65-484 |
1.25e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 65 KLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKEstEAQSLEATYENL-----EQSKSKLEDEILLLEEKLE 139
Cdd:TIGR00606 420 KERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIK--ELQQLEGSSDRIleldqELRKAERELSKAEKNSLTE 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 140 EERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTF-----------RIFEIN---EERLKGAIKDALNEnSQLQ 205
Cdd:TIGR00606 498 TLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEmltkdkmdkdeQIRKIKsrhSDELTSLLGYFPNK-KQLE 576
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 206 ESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVlgEADDGNLDLDMKSGLEN 285
Cdd:TIGR00606 577 DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDE--ESDLERLKEEIEKSSKQ 654
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 286 TAALdnqpkgALKKLIYAAKLNASLkalegERNQVYTQLSEVD-QVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQ 364
Cdd:TIGR00606 655 RAML------AGATAVYSQFITQLT-----DENQSCCPVCQRVfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEK 723
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 365 KLKVITELY--QENEMKLHRKLTVEENYRLEK-EEKLSKVDEKISHATEELETC---RQRAKDLEEELErTIHSYQGQVI 438
Cdd:TIGR00606 724 RRDEMLGLApgRQSIIDLKEKEIPELRNKLQKvNRDIQRLKNDIEEQETLLGTImpeEESAKVCLTDVT-IMERFQMELK 802
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568979261 439 SHEKKAHD--NWLAARTLERNLNDLRKENAHNRQKLTETEFKFELLEK 484
Cdd:TIGR00606 803 DVERKIAQqaAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRK 850
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
64-253 |
1.29e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 64 KKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQsLEATYENLEQSKskledeillleekleeera 143
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAE-IDKLQAEIAEAE------------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 144 khSEQDELMADISKRIQSL--EDESKSLKSQVAEAK--TTF--RIFEINeeRLKGAIKDALNEnsqLQESQKQLLQETEM 217
Cdd:COG3883 79 --AEIEERREELGERARALyrSGGSVSYLDVLLGSEsfSDFldRLSALS--KIADADADLLEE---LKADKAELEAKKAE 151
|
170 180 190
....*....|....*....|....*....|....*.
gi 568979261 218 MKEQVNDLDKQKVALEESRAQAEQALSEKESQIETL 253
Cdd:COG3883 152 LEAKLAELEALKAELEAAKAELEAQQAEQEALLAQL 187
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
149-436 |
1.40e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.66 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 149 DELMADIS------KRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQV 222
Cdd:PRK01156 176 DMLRAEISnidyleEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYE 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 223 NDLDKQkvaleESRAQAEQALSEKESQIETLVTSLLKMKDWAA---VLGEADDGNLDLDMKSGLENTAALDNQPKGALKK 299
Cdd:PRK01156 256 SEIKTA-----ESDLSMELEKNNYYKELEERHMKIINDPVYKNrnyINDYFKYKNDIENKKQILSNIDAEINKYHAIIKK 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 300 LiyaaklnaslKALEGERNQVYTQLSEvdqvKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMK 379
Cdd:PRK01156 331 L----------SVLQKDYNDYIKKKSR----YDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEI 396
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 380 LHRKLTVEENYRLEKEEKLSKVDE---KISHATEELETCRQRakdlEEELERTIHSYQGQ 436
Cdd:PRK01156 397 LKIQEIDPDAIKKELNEINVKLQDissKVSSLNQRIRALREN----LDELSRNMEMLNGQ 452
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
157-254 |
1.44e-04 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 43.72 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 157 KRIQSLEDESKSLKS---QVAEAKTTFRIFEINEE--RLKGAIKDALNE-NSQLQESQKQLLQETEMMKEQVNDLDKQKV 230
Cdd:pfam12072 27 AKIGSAEELAKRIIEeakKEAETKKKEALLEAKEEihKLRAEAERELKErRNELQRQERRLLQKEETLDRKDESLEKKEE 106
|
90 100
....*....|....*....|....*..
gi 568979261 231 AL---EESRAQAEQALSEKESQIETLV 254
Cdd:pfam12072 107 SLekkEKELEAQQQQLEEKEEELEELI 133
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
63-428 |
1.83e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 63 EKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEAsfEKESTEAQSLEATYENLEQSKSKLEDEILLLEEKLEEER 142
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA--AELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 143 AKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQV 222
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 223 NDLDKQKV----------------ALEESRAQAEQALSEKESQIETLVTSLLKMK------------------------- 261
Cdd:COG1196 515 LLAGLRGLagavavligveaayeaALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratflpldkiraraalaaalar 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 262 ---DWAAVLGEADDGNLDLDMKSGLENTAALDNQPKGALKKLIYAAKLNASLKALEGERNQVY-----------TQLSEV 327
Cdd:COG1196 595 gaiGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSaggsltggsrrELLAAL 674
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 328 DQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHRKLTVEENYR---LEKEEKLSKVDEK 404
Cdd:COG1196 675 LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLeelLEEEELLEEEALE 754
|
410 420
....*....|....*....|....
gi 568979261 405 ISHATEELETCRQRAKDLEEELER 428
Cdd:COG1196 755 ELPEPPDLEELERELERLEREIEA 778
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
310-490 |
2.28e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 310 LKALEGERNQVYTQLSEVDQvkedLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVItELYQENEmKLHRKLTvEEN 389
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAE----LQEELEELEEELEELEAELEELREELEKLEKLLQLL-PLYQELE-ALEAELA-ELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 390 YRLEK-EEKLskvdEKISHATEELETCRQRAKDLEEELERTIHSYQgqvISHEKKAHDNWLAARTLERNLNDLRKENAHN 468
Cdd:COG4717 146 ERLEElEERL----EELRELEEELEELEAELAELQEELEELLEQLS---LATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180
....*....|....*....|..
gi 568979261 469 RQKLTETEFKFELLEKDPYALD 490
Cdd:COG4717 219 QEELEELEEELEQLENELEAAA 240
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
62-440 |
2.48e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 62 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEasFEKESTEAQSLEATYENLEQS-KSKLEDEILLLEEKLEE 140
Cdd:COG4717 119 EKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE--LRELEEELEELEAELAELQEElEELLEQLSLATEEELQD 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 141 ERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKG--------------AIKDALNENSQ--- 203
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEArlllliaaallallGLGGSLLSLILtia 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 204 -------------LQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEA 270
Cdd:COG4717 277 gvlflvlgllallFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 271 DDGNLDLDMKSGLENTAALDNQPK-GALKKLIYAAKLNASLKALEGERNQVYTQLSE---------VDQVKEDLTEHIKS 340
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELEEQLEEllgeleellEALDEEELEEELEE 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 341 LESKQASLQSEKTEFESESQKLQQKLKvitelyqenemklhrkltveenyRLEKEEKLSKVDEKISHATEELETCRQR-- 418
Cdd:COG4717 437 LEEELEELEEELEELREELAELEAELE-----------------------QLEEDGELAELLQELEELKAELRELAEEwa 493
|
410 420
....*....|....*....|....*..
gi 568979261 419 -----AKDLEEELERTIHSYQGQVISH 440
Cdd:COG4717 494 alklaLELLEEAREEYREERLPPVLER 520
|
|
| PRK14473 |
PRK14473 |
F0F1 ATP synthase subunit B; Provisional |
156-255 |
3.12e-04 |
|
F0F1 ATP synthase subunit B; Provisional
Pssm-ID: 172948 [Multi-domain] Cd Length: 164 Bit Score: 42.22 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 156 SKRIQSLEDESKSLKSQVAEAKTTFrifeinEERLKGAIKDALNENSQLQESQKQllQETEMMKEQVNDLDKQKvalEES 235
Cdd:PRK14473 41 TRRIEESLRDAEKVREQLANAKRDY------EAELAKARQEAAKIVAQAQERARA--QEAEIIAQARREAEKIK---EEA 109
|
90 100
....*....|....*....|....
gi 568979261 236 RAQAEQ----ALSEKESQIETLVT 255
Cdd:PRK14473 110 RAQAEQerqrMLSELKSQIADLVT 133
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
94-262 |
3.96e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 43.26 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 94 LESSLKEASFEKESTEAQsLEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMADIsKRIQSLEDESKSLKSQV 173
Cdd:pfam15905 168 LEAKMKEVMAKQEGMEGK-LQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYI-TELSCVSEQVEKYKLDI 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 174 AEAKttfrifEINEERlkgaikdalneNSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRaqaEQALSEKESQIETL 253
Cdd:pfam15905 246 AQLE------ELLKEK-----------NDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEK---EELLREYEEKEQTL 305
|
....*....
gi 568979261 254 VTSLLKMKD 262
Cdd:pfam15905 306 NAELEELKE 314
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
304-451 |
4.45e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 304 AKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFES---------ESQKLQQKLKvitelYQ 374
Cdd:COG1579 27 KELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEqlgnvrnnkEYEALQKEIE-----SL 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568979261 375 ENEMKLHRKLTVEENYRLE-KEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAA 451
Cdd:COG1579 102 KRRISDLEDEILELMERIEeLEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLAL 179
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
149-433 |
4.86e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 4.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 149 DELMADISKRiQSLEDESKSLKSQVAEAKTTFRIFE---------INEERLKGAIKDALNENSQL----QESQKQLLQET 215
Cdd:TIGR01612 1486 NELKEHIDKS-KGCKDEADKNAKAIEKNKELFEQYKkdvtellnkYSALAIKNKFAKTKKDSEIIikeiKDAHKKFILEA 1564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 216 EMMKEQVNDLDKQKVALEESRA---QAEQALSEKESQIETLVTSLLKMKDwaavlgeaddgnldldmksglentaaldnq 292
Cdd:TIGR01612 1565 EKSEQKIKEIKKEKFRIEDDAAkndKSNKAAIDIQLSLENFENKFLKISD------------------------------ 1614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 293 pkgaLKKliyaaKLNASLKALEGERNQVY--------TQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFEsesqKLQQ 364
Cdd:TIGR01612 1615 ----IKK-----KINDCLKETESIEKKISsfsidsqdTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELD----ELDS 1681
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568979261 365 KLKVItelyqENEMKLHRKltveeNYRLEKEEklsKVDEKISHATEELETCRQRakdLEEELERTIHSY 433
Cdd:TIGR01612 1682 EIEKI-----EIDVDQHKK-----NYEIGIIE---KIKEIAIANKEEIESIKEL---IEPTIENLISSF 1734
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
159-377 |
5.08e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 159 IQSLEDESKSLKSQVAEAKTTFRIFEiNEERLKGAIKDALNENSQLQesqKQLLQETEMMKEQVNDLDKQKVALEESRAQ 238
Cdd:PRK11281 41 VQAQLDALNKQKLLEAEDKLVQQDLE-QTLALLDKIDRQKEETEQLK---QQLAQAPAKLRQAQAELEALKDDNDEETRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 239 AEQALS--EKESQIETLVTSLlkmKDWAAVLGEAddgNLDL------------DMKSGLENTAALDNQPKG--ALKKLIY 302
Cdd:PRK11281 117 TLSTLSlrQLESRLAQTLDQL---QNAQNDLAEY---NSQLvslqtqperaqaALYANSQRLQQIRNLLKGgkVGGKALR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 303 A---AKLNASLKALEGE----RN--QVYTQLSEVDQVKEDL-TEHIKSLESKQASLQ----------SEKTEFESESQKL 362
Cdd:PRK11281 191 PsqrVLLQAEQALLNAQndlqRKslEGNTQLQDLLQKQRDYlTARIQRLEHQLQLLQeainskrltlSEKTVQEAQSQDE 270
|
250
....*....|....*
gi 568979261 363 QQKLKVITELYQENE 377
Cdd:PRK11281 271 AARIQANPLVAQELE 285
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
142-478 |
5.60e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 5.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 142 RAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFrifEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQ 221
Cdd:pfam10174 351 RLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDML---DVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSL 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 222 VNDLDKQKVALeesrAQAEQALSEKESQIETLVTSllKMKDWAAVLGEADDGNLDL-DMKSGL--------ENTAALDNQ 292
Cdd:pfam10174 428 QTDSSNTDTAL----TTLEEALSEKERIIERLKEQ--REREDRERLEELESLKKENkDLKEKVsalqpeltEKESSLIDL 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 293 PKGALKKLIYAAKLNASLKALEGE-----------RNQVYT--QLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESES 359
Cdd:pfam10174 502 KEHASSLASSGLKKDSKLKSLEIAveqkkeecsklENQLKKahNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEV 581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 360 QKLQQKLKvitelyqenEMklhrkltveENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTihsyQGQVIS 439
Cdd:pfam10174 582 ERLLGILR---------EV---------ENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKK----GAQLLE 639
|
330 340 350
....*....|....*....|....*....|....*....
gi 568979261 440 HEKKAHDNwLAARTLERNLNDLRKENAHNRQKLTETEFK 478
Cdd:pfam10174 640 EARRREDN-LADNSQQLQLEELMGALEKTRQELDATKAR 677
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
150-345 |
6.24e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 6.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 150 ELMADISKRIQSLEdESKSLKSQVAEAKTTFRIFEINEERL---KGAIKDALNEN--SQLQESQKQLLQETEMMKEQVND 224
Cdd:COG4913 242 EALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALrlwFAQRRLELLEAelEELRAELARLEAELERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 225 LDKQKVALEESRAQA--------EQALSEKESQIETLVTSLLKMKDWAAVLGEAddgnLDLDMKSGLENTAALDNQpkga 296
Cdd:COG4913 321 LREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLAALGLP----LPASAEEFAALRAEAAAL---- 392
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568979261 297 lkkliyAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQ 345
Cdd:COG4913 393 ------LEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
80-391 |
7.11e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 7.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 80 LLDKVSIVQKEYEGLESSlkEASFEKESTEAQS--LEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMADISK 157
Cdd:TIGR00606 787 CLTDVTIMERFQMELKDV--ERKIAQQAAKLQGsdLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKS 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 158 RIQSLEDESKSL-----KSQVAEAKTTFRIFEINEerLKGAIKDALNENSQLQESQKQLLQETE---------------- 216
Cdd:TIGR00606 865 KTNELKSEKLQIgtnlqRRQQFEEQLVELSTEVQS--LIREIKDAKEQDSPLETFLEKDQQEKEelissketsnkkaqdk 942
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 217 --MMKEQVNDLDKQKVALEESRAQA-EQALSEKESQIETLVTSLLKMKDWAAVLGEaDDGNLDLDMKSglentaalDNQP 293
Cdd:TIGR00606 943 vnDIKEKVKNIHGYMKDIENKIQDGkDDYLKQKETELNTVNAQLEECEKHQEKINE-DMRLMRQDIDT--------QKIQ 1013
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 294 KGALKKLIYAAKLNASLKALEGERNQVYTQLSEvDQVKEDLTEHIKsLESKQASLQSEKTEFESESQKLQQKLKVITELY 373
Cdd:TIGR00606 1014 ERWLQDNLTLRKRENELKEVEEELKQHLKEMGQ-MQVLQMKQEHQK-LEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091
|
330
....*....|....*...
gi 568979261 374 QENEMKlhrklTVEENYR 391
Cdd:TIGR00606 1092 REPQFR-----DAEEKYR 1104
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
153-446 |
7.79e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 7.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 153 ADISKRIQSLEDESKSLKSQvaeaKTTFRIFEINEERLKGAIKDALNENSQLQESQK------QLLQET----------- 215
Cdd:pfam05483 99 AELKQKENKLQENRKIIEAQ----RKAIQELQFENEKVSLKLEEEIQENKDLIKENNatrhlcNLLKETcarsaektkky 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 216 EMMKEQV--------NDLDKQKVALEESRAQAEQA-------------------------LSEKESQIETLVTSLL---- 258
Cdd:pfam05483 175 EYEREETrqvymdlnNNIEKMILAFEELRVQAENArlemhfklkedhekiqhleeeykkeINDKEKQVSLLLIQITeken 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 259 KMKDWAAVLGEADDGNLDLDMKSGL--ENTAALdNQPKGALKKLIYAAKLN-----ASLKALEgERNQVYTQlsEVDQVK 331
Cdd:pfam05483 255 KMKDLTFLLEESRDKANQLEEKTKLqdENLKEL-IEKKDHLTKELEDIKMSlqrsmSTQKALE-EDLQIATK--TICQLT 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 332 EDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLhRKLTVEENYRLEKEEKLSKVDEKISHATEE 411
Cdd:pfam05483 331 EEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQL-KIITMELQKKSSELEEMTKFKNNKEVELEE 409
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 568979261 412 LETC----------RQRAKDLEEELERTIHSYQGQVISHEKKAHD 446
Cdd:pfam05483 410 LKKIlaedeklldeKKQFEKIAEELKGKEQELIFLLQAREKEIHD 454
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
95-474 |
8.38e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 8.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 95 ESSLKEASFEKESTEAQSLEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVA 174
Cdd:pfam01576 6 EMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 175 EAKTTFRIFEINEERLKGAIKDaLNENSQLQESQKQLLQ---------------ETEMMKEQVNDLDKQKVALEESRAQA 239
Cdd:pfam01576 86 EEEERSQQLQNEKKKMQQHIQD-LEEQLDEEEAARQKLQlekvtteakikkleeDILLLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 240 EQALSEKESQIETLvtSLLKMKDWAavlgeaddgnldldMKSGLENTAALDNQPKGALKKLiyaaklnasLKALEGERNQ 319
Cdd:pfam01576 165 TSNLAEEEEKAKSL--SKLKNKHEA--------------MISDLEERLKKEEKGRQELEKA---------KRKLEGESTD 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 320 VYTQLSEVDQVKEDLTehiKSLESKQASLQSEKTEFESESQKLQQKLKVITELyQENEMKLHRKLTVEENYRlEKEEKLS 399
Cdd:pfam01576 220 LQEQIAELQAQIAELR---AQLAKKEEELQAALARLEEETAQKNNALKKIREL-EAQISELQEDLESERAAR-NKAEKQR 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 400 KvdekisHATEELETCRqraKDLEEELERT-----IHSYQGQVISHEKKAHDNwlAARTLERNLNDLRKENAHNRQKLTE 474
Cdd:pfam01576 295 R------DLGEELEALK---TELEDTLDTTaaqqeLRSKREQEVTELKKALEE--ETRSHEAQLQEMRQKHTQALEELTE 363
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
152-483 |
9.50e-04 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.52 E-value: 9.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 152 MADISKRIQSLEDESKSLKsqVAEAKTtfrifEIN--EERLKGA---IKDALNENSQLQESQKQLLQETEMMKEQVNDLD 226
Cdd:PRK04778 81 LPDIEEQLFEAEELNDKFR--FRKAKH-----EINeiESLLDLIeedIEQILEELQELLESEEKNREEVEQLKDLYRELR 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 227 KQkvaLEESRAQAEQALSEKESQIETLVTSLLKMKDwaavlgEADDGN--------LDLDMKsglenTAALDNQ----PK 294
Cdd:PRK04778 154 KS---LLANRFSFGPALDELEKQLENLEEEFSQFVE------LTESGDyveareilDQLEEE-----LAALEQImeeiPE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 295 GaLKKLiyAAKLNASLKALEgernQVYTQLSE---------VDQVKEDLTEHIKSLESKQASLqsEKTEFESESQKLQQK 365
Cdd:PRK04778 220 L-LKEL--QTELPDQLQELK----AGYRELVEegyhldhldIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQER 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 366 lkvITELYQ--ENEMKLHRKLtveenyrlekEEKLSKVDEKISHATEEletcrqrAKDLEEELERTIHSYQgqvISHEKK 443
Cdd:PRK04778 291 ---IDQLYDilEREVKARKYV----------EKNSDTLPDFLEHAKEQ-------NKELKEEIDRVKQSYT---LNESEL 347
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 568979261 444 AHdnwlaARTLERNLNDLRKENAHNRQKLTETEFKFELLE 483
Cdd:PRK04778 348 ES-----VRQLEKQLESLEKQYDEITERIAEQEIAYSELQ 382
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
147-485 |
9.50e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.89 E-value: 9.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 147 EQDELMADISKRIQSLEDESkslkSQVAEAKTTFrifeinEERL--KGAIKDALNEnsQLQESQKQLLQETEMMKEQVND 224
Cdd:pfam10174 412 DKDKQLAGLKERVKSLQTDS----SNTDTALTTL------EEALseKERIIERLKE--QREREDRERLEELESLKKENKD 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 225 LDKQKVALEESRAQAEQALSEKESQIETLVTSLLKmKDwaavlgeADDGNLDLDMKSGLENTAALDNQPKGALKKLIYA- 303
Cdd:pfam10174 480 LKEKVSALQPELTEKESSLIDLKEHASSLASSGLK-KD-------SKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVr 551
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 304 --AKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESES--QKLQQKLKVITELYQENEMK 379
Cdd:pfam10174 552 tnPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTlrQMKEQNKKVANIKHGQQEMK 631
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 380 LHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTihsyqgQVISHEKKAHdnwlaartlernLN 459
Cdd:pfam10174 632 KKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSST------QQSLAEKDGH------------LT 693
|
330 340 350
....*....|....*....|....*....|..
gi 568979261 460 DLRKEnahNRQKLTET-EFKFELL-----EKD 485
Cdd:pfam10174 694 NLRAE---RRKQLEEIlEMKQEALlaaisEKD 722
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
316-407 |
1.02e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 316 ERNQVYTQLSE-VDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHR--KLTVEEnyrl 392
Cdd:PRK12704 79 ERRNELQKLEKrLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERisGLTAEE---- 154
|
90
....*....|....*
gi 568979261 393 EKEEKLSKVDEKISH 407
Cdd:PRK12704 155 AKEILLEKVEEEARH 169
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
297-443 |
1.02e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 297 LKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITEL---- 372
Cdd:COG1579 6 LRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnv 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568979261 373 -----YQ--ENEM-KLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKK 443
Cdd:COG1579 86 rnnkeYEalQKEIeSLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
48-474 |
1.49e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 48 WRGFRSIRSRF-YVGREKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEATYENLEQSKSK 126
Cdd:TIGR00606 556 SRHSDELTSLLgYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQ 635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 127 ledeILLLEEKLEEERAKHSEQDELM-----ADISKRIQSLEDESKS---LKSQVAEAKTtfrifEINE--ERLKGAIKD 196
Cdd:TIGR00606 636 ----DEESDLERLKEEIEKSSKQRAMlagatAVYSQFITQLTDENQSccpVCQRVFQTEA-----ELQEfiSDLQSKLRL 706
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 197 ALNENSQLQESQKQLLQETEMM----KEQVNDLDKQKVALEESR----------AQAEQALSEKESQIETLVTSLLKMKD 262
Cdd:TIGR00606 707 APDKLKSTESELKKKEKRRDEMlglaPGRQSIIDLKEKEIPELRnklqkvnrdiQRLKNDIEEQETLLGTIMPEEESAKV 786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 263 WAAVLGEADdgNLDLDMKSGLENTAALDNQPKGALKKLIYaAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLE 342
Cdd:TIGR00606 787 CLTDVTIME--RFQMELKDVERKIAQQAAKLQGSDLDRTV-QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK 863
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 343 SKQASLQSEKTEFESESQKLQQ-------KLKVITELYQENEMKLHRKLTVEENyrleKEEKLSKVDEKISHATEELETC 415
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQfeeqlveLSTEVQSLIREIKDAKEQDSPLETF----LEKDQQEKEELISSKETSNKKA 939
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 416 RQRAKDLEEELERtIHSYQGQVISHEKKAHDNWLAARTLERN-LNDLRKENAHNRQKLTE 474
Cdd:TIGR00606 940 QDKVNDIKEKVKN-IHGYMKDIENKIQDGKDDYLKQKETELNtVNAQLEECEKHQEKINE 998
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
69-484 |
1.56e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 69 ELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQsLEATYENLEQSKSKledeillleekleeeraKHSEQ 148
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE-IKKQEWKLEQLAAD-----------------LSKYE 468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 149 DELMaDISKRIQSLEDESKSLKSQVAEAKTTFRIFEI-------NEERLKGAIKDALNENSQLQESQKQLLQETEMMKEq 221
Cdd:TIGR02169 469 QELY-DLKEEYDRVEKELSKLQRELAEAEAQARASEErvrggraVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAG- 546
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 222 vNDLDKQKVALEESRAQAEQALSEKESQIETLVtSLLKMKDWAAVLGE-ADDGNLDLDMksgleNTAALDNQPKGALKKL 300
Cdd:TIGR02169 547 -NRLNNVVVEDDAVAKEAIELLKRRKAGRATFL-PLNKMRDERRDLSIlSEDGVIGFAV-----DLVEFDPKYEPAFKYV 619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 301 ---------IYAAK---LNASLKALEGE---------------RNQVYTQLSEVDQVKEdLTEHIKSLESKQASLQSEKT 353
Cdd:TIGR02169 620 fgdtlvvedIEAARrlmGKYRMVTLEGElfeksgamtggsrapRGGILFSRSEPAELQR-LRERLEGLKRELSSLQSELR 698
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 354 EFESESQKLQQKLKVITELYQENEMKLHRKLTVEENYRlekeEKLSKVDEKISHATEELETCRQRAKDLE---EELERTI 430
Cdd:TIGR02169 699 RIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK----ERLEELEEDLSSLEQEIENVKSELKELEariEELEEDL 774
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568979261 431 HSYQGQVisHEKKAHDNWLAARTLERNLNDLRKENAHNR-------QKLTETEFKFELLEK 484
Cdd:TIGR02169 775 HKLEEAL--NDLEARLSHSRIPEIQAELSKLEEEVSRIEarlreieQKLNRLTLEKEYLEK 833
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
306-476 |
2.28e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 306 LNASLKALEGERNQV--YTQLSEVDQVKE---------DLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQ 374
Cdd:COG1196 198 LERQLEPLERQAEKAerYRELKEELKELEaellllklrELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 375 ENEMKLHRKLtvEENYRLEKEekLSKVDEKISHATEEletcRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTL 454
Cdd:COG1196 278 ELELELEEAQ--AEEYELLAE--LARLEQDIARLEER----RRELEERLEELEEELAELEEELEELEEELEELEEELEEA 349
|
170 180
....*....|....*....|..
gi 568979261 455 ERNLNDLRKENAHNRQKLTETE 476
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAE 371
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
305-428 |
2.28e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.77 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 305 KLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKV-ITELYQENEMKLhRK 383
Cdd:smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEkLKKLLQEIMIKV-KK 226
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 568979261 384 LTveenyrlEKEEKLSKVDEKISHATEELETCRQRAKDLEEELER 428
Cdd:smart00787 227 LE-------ELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
62-476 |
2.92e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 2.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 62 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFE--KESTEAQSLEATYENLEQSKSKLEDEILLLEEKLE 139
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRtsAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQ 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 140 EERAKHSEQDELMADISKRIQSL---------EDESKSLKSQVA-EAKTTFRIFEINEERLKGAIKDALNENS------Q 203
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLqtkeqihlqETRKKAVVLARLlELQEEPCPLCGSCIHPNPARQDIDNPGPltrrmqR 532
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 204 LQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSGL 283
Cdd:TIGR00618 533 GEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 284 ENTAALDN-QPKGALKKLI-----YAAKLNASLKALEGErnqvytqlsEVDQVKEDLTEHIKSLESKQASLQSEKTEFES 357
Cdd:TIGR00618 613 EQHALLRKlQPEQDLQDVRlhlqqCSQELALKLTALHAL---------QLTLTQERVREHALSIRVLPKELLASRQLALQ 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 358 ESQKLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIhsyQGQV 437
Cdd:TIGR00618 684 KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVL---KART 760
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 568979261 438 ISHEKKAHDNWLAART------LERNLNDLRKENAHNRQKLTETE 476
Cdd:TIGR00618 761 EAHFNNNEEVTAALQTgaelshLAAEIQFFNRLREEDTHLLKTLE 805
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
61-412 |
2.92e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 2.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 61 GREKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQsLEATYENLEQSKskledeillleEKLEE 140
Cdd:COG4372 17 GLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEE-LEQARSELEQLE-----------EELEE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 141 ERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKE 220
Cdd:COG4372 85 LNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 221 QVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDMK-------SGLENTAALDNQP 293
Cdd:COG4372 165 ELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKdsleaklGLALSALLDALEL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 294 KGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQ-------KL 366
Cdd:COG4372 245 EEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDallaallEL 324
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 568979261 367 KVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEEL 412
Cdd:COG4372 325 AKKLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
303-476 |
2.94e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 303 AAKLNASLKALEGE-----RNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENE 377
Cdd:COG1196 215 YRELKEELKELEAEllllkLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 378 MKLHRkLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERN 457
Cdd:COG1196 295 AELAR-LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170
....*....|....*....
gi 568979261 458 LNDLRKENAHNRQKLTETE 476
Cdd:COG1196 374 LAEAEEELEELAEELLEAL 392
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
99-428 |
5.11e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 5.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 99 KEASFEKESTEAQSLEATYE--------------NLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMADISKRIQSLED 164
Cdd:pfam15921 456 KNESLEKVSSLTAQLESTKEmlrkvveeltakkmTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQH 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 165 -------------ESKSLKSQVAEAKTTFRIFEINEE----------RLKGAIkdaLNENSQLQES---QKQLLQETEMM 218
Cdd:pfam15921 536 lknegdhlrnvqtECEALKLQMAEKDKVIEILRQQIEnmtqlvgqhgRTAGAM---QVEKAQLEKEindRRLELQEFKIL 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 219 KEQ-----------VNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEaDDGNLDLDMKSGLENTA 287
Cdd:pfam15921 613 KDKkdakirelearVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSE-DYEVLKRNFRNKSEEME 691
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 288 ALDNQPKGALKKLIYA-AKLNASLKALEGE-----------RNQVYTQLSEVDQvkedLTEHIKSLESKQASLQSEKTEF 355
Cdd:pfam15921 692 TTTNKLKMQLKSAQSElEQTRNTLKSMEGSdghamkvamgmQKQITAKRGQIDA----LQSKIQFLEEAMTNANKEKHFL 767
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568979261 356 ESESQKLQQKLKVITElyQENEMKLHRKLTVEENYRLekEEKLSKVDEKISHATEELETCRQRAKDLEEELER 428
Cdd:pfam15921 768 KEEKNKLSQELSTVAT--EKNKMAGELEVLRSQERRL--KEKVANMEVALDKASLQFAECQDIIQRQEQESVR 836
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
146-388 |
8.32e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.61 E-value: 8.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 146 SEQDELMADiskRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNEN----SQLQESQKQLLQETEMMKEQ 221
Cdd:PHA02562 166 SEMDKLNKD---KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKqnkyDELVEEAKTIKAEIEELTDE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 222 VNDLDKQKVALEESRAQAEQALSEKESQIETLvTSLLKM--------------KDWAAVLGEADDGNLDLDMKSGLENTA 287
Cdd:PHA02562 243 LLNLVMDIEDPSAALNKLNTAAAKIKSKIEQF-QKVIKMyekggvcptctqqiSEGPDRITKIKDKLKELQHSLEKLDTA 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 288 ALDNQpkgalKKLIYAAKLNASLKALEGERNQVYTQLS-EVDQvkedltehIKSLESKQASLQSEKTEFESESQKLQQKL 366
Cdd:PHA02562 322 IDELE-----EIMDEFNEQSKKLLELKNKISTNKQSLItLVDK--------AKKVKAAIEELQAEFVDNAEELAKLQDEL 388
|
250 260
....*....|....*....|..
gi 568979261 367 KVITELYQENEMKLHRKLTVEE 388
Cdd:PHA02562 389 DKIVKTKSELVKEKYHRGIVTD 410
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
332-443 |
8.74e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.38 E-value: 8.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 332 EDLTEHIksLESKQASLQSEKTEFESESQKLQQKLKviTELYQENEMKLhRKLTVEENYRLEKEEKLSKVDEKISHATEE 411
Cdd:PRK12704 37 EEEAKRI--LEEAKKEAEAIKKEALLEAKEEIHKLR--NEFEKELRERR-NELQKLEKRLLQKEENLDRKLELLEKREEE 111
|
90 100 110
....*....|....*....|....*....|..
gi 568979261 412 LETCRQRAKDLEEELERTIHSYQGQVISHEKK 443
Cdd:PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
325-428 |
8.85e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 39.53 E-value: 8.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 325 SEVDQVKEDLTE----HIkslESKQASLQSEKT-EFESESQKLQQKLKVITELYQENEMKLHRKLTVEENyRLEK----- 394
Cdd:PRK05771 16 SYKDEVLEALHElgvvHI---EDLKEELSNERLrKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVK-SLEElikdv 91
|
90 100 110
....*....|....*....|....*....|....
gi 568979261 395 EEKLSKVDEKISHATEELETCRQRAKDLEEELER 428
Cdd:PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIER 125
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
46-433 |
9.85e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 39.50 E-value: 9.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 46 FLWRGFRSIRSR--FYVGREKKLALElsalieekCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEATYENLEQS 123
Cdd:PLN02939 9 LLSHGCGPIRSRapFYLPSRRRLAVS--------CRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 124 KSKLEDEILLLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALnensq 203
Cdd:PLN02939 81 RTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQAL----- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 204 lqESQKQLLQETEMMKEQVNDLDKQkvaLEESRAQAEQALSEKeSQIETLVTSLLKMKDWAAVLGEADDG---NLDLDMK 280
Cdd:PLN02939 156 --EDLEKILTEKEALQGKINILEMR---LSETDARIKLAAQEK-IHVEILEEQLEKLRNELLIRGATEGLcvhSLSKELD 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 281 SGLENTAALDNQPKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEfesesq 360
Cdd:PLN02939 230 VLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE------ 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979261 361 KLQQKLKVITELYQenemklHRKLTVEENYRLEKeeKLSKVDEKISHA------TEELETCRQRAKDLEEELERT---IH 431
Cdd:PLN02939 304 NLQDLLDRATNQVE------KAALVLDQNQDLRD--KVDKLEASLKEAnvskfsSYKVELLQQKLKLLEERLQASdheIH 375
|
..
gi 568979261 432 SY 433
Cdd:PLN02939 376 SY 377
|
|
| |
