|
Name |
Accession |
Description |
Interval |
E-value |
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
168-444 |
1.57e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 71.20 E-value: 1.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 168 DISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALE 247
Cdd:TIGR04523 374 KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKE 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 248 ESRAQAEQALSEKESQIETLVTSLLKMK-DWAAVLGEADDGNLDLDMKSglENTAALDNQPKgALKKLIyaAKLNASLKA 326
Cdd:TIGR04523 454 LIIKNLDNTRESLETQLKVLSRSINKIKqNLEQKQKELKSKEKELKKLN--EEKKELEEKVK-DLTKKI--SSLKEKIEK 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 327 LEGERNQVYTQLS----EVDQVKEDLT------------EHIKSLESKQASLQSEKTEFEsesQKLQQKLKVITELYQEN 390
Cdd:TIGR04523 529 LESEKKEKESKISdledELNKDDFELKkenlekeideknKEIEELKQTQKSLKKKQEEKQ---ELIDQKEKEKKDLIKEI 605
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 568979259 391 EMKLHRKLTVEENYRLEKEE--KLSKVDEKISHATEELEtcrQRAKDLEEELERTI 444
Cdd:TIGR04523 606 EEKEKKISSLEKELEKAKKEneKLSSIIKNIKSKKNKLK---QEVKQIKETIKEIR 658
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
74-439 |
9.93e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.94 E-value: 9.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 74 ELSALIEEKCKLLDKVSIVQK---EYEGLESSLKEASF-----EKESTEAQsLEFVEGsQISEATyENLEQSKSKLEDei 145
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREkaeRYQALLKEKREYEGyellkEKEALERQ-KEAIER-QLASLE-EELEKLTEEISE-- 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 146 llleekleeeRAKHSEQDE-LMADISKRIQSL-EDESKSLKSQVAEakttfriFEINEERLKGAIKDALNENSQLQESQK 223
Cdd:TIGR02169 263 ----------LEKRLEEIEqLLEELNKKIKDLgEEEQLRVKEKIGE-------LEAEIASLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 224 QLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVtsllkmkdwaAVLGEADdgnldldmksglENTAAL 303
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR----------AELEEVD------------KEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 304 DNQPKGALKKLiyaAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVI 383
Cdd:TIGR02169 384 RDELKDYREKL---EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 568979259 384 TELYQENEMKLHRkltveenyrleKEEKLSKVDEKISHATEELETCRQRAKDLEEE 439
Cdd:TIGR02169 461 AADLSKYEQELYD-----------LKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
64-498 |
1.28e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.12 E-value: 1.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 64 YVGREKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEgsQISEATYEnLEQSKSKLED 143
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK--QLSEKQKE-LEQNNKKIKE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 144 EILLLEEKLEEERA-KHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTfrIFEINEE--RLKGAIKDALNENS---- 216
Cdd:TIGR04523 286 LEKQLNQLKSEISDlNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKI--ISQLNEQisQLKKELTNSESENSekqr 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 217 QLQESQKQL----------LQETEMMKEQVNDL-------DKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAA 279
Cdd:TIGR04523 364 ELEEKQNEIeklkkenqsyKQEIKNLESQINDLeskiqnqEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 280 VLgEADDGNLDLDMKSgLENTAALDNQPKGALKKLIYAAKLNasLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQ 359
Cdd:TIGR04523 444 DL-TNQDSVKELIIKN-LDNTRESLETQLKVLSRSINKIKQN--LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKI 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 360 ASLQSEKTEFESESQKLQQKLKVItelyqENEMKlhrKLTVEENYRLEKEEKLSKvDEKIS---HATEELETCRQRAKDL 436
Cdd:TIGR04523 520 SSLKEKIEKLESEKKEKESKISDL-----EDELN---KDDFELKKENLEKEIDEK-NKEIEelkQTQKSLKKKQEEKQEL 590
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568979259 437 EEELERTIHSYQGQVISHEKKAhdnwlaaRTLERNLNDLRKENAHNRQKLTETEFKFELLEK 498
Cdd:TIGR04523 591 IDQKEKEKKDLIKEIEEKEKKI-------SSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
79-385 |
1.33e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.12 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 79 IEEKCKLLDKVsivQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKledeillleekleeeraK 158
Cdd:TIGR04523 365 LEEKQNEIEKL---KKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL-----------------L 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 159 HSEQDELMADISKR---IQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKdalNENSQLQESQKQLLQETEMMK-- 233
Cdd:TIGR04523 425 EKEIERLKETIIKNnseIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSIN---KIKQNLEQKQKELKSKEKELKkl 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 234 --------EQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKD---WAAVLGEADDGNLDLDmKSGLENTAA 302
Cdd:TIGR04523 502 neekkeleEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFelkKENLEKEIDEKNKEIE-ELKQTQKSL 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 303 LDNQPKgaLKKLIyaaklnaslKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKV 382
Cdd:TIGR04523 581 KKKQEE--KQELI---------DQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
...
gi 568979259 383 ITE 385
Cdd:TIGR04523 650 IKE 652
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
60-477 |
5.34e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.53 E-value: 5.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 60 RSRFYVGREKKLAlelsALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKS 139
Cdd:pfam02463 164 GSRLKRKKKEALK----KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 140 KLEDEILLLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEER-LKGAIKDALNENSQL 218
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLkLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 219 QESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLvtsLLKMKDWAAVLGEADDGNLDLDmkSGLE 298
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKL---EQLEEELLAKKKLESERLSSAA--KLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 299 NTAALDNQPKGALKKLIYAAKLNASLkaLEGERNQVYTQLSEVDQVKEDLTEHI---KSLESKQASLQSEKTEFESESQK 375
Cdd:pfam02463 395 EELELKSEEEKEAQLLLELARQLEDL--LKEEKKEELEILEEEEESIELKQGKLteeKEELEKQELKLLKDELELKKSED 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 376 LQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVD-EKISHATEELETCRQRAKDLEEELERTIHSYQGQVISH 454
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLaLIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
410 420
....*....|....*....|...
gi 568979259 455 EKKAHDNWLAARTLERNLNDLRK 477
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPL 575
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
57-429 |
1.70e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 1.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 57 RSIRSRFYVGREKKLALELSAL-IEEKcklldkvsivQKEYEGLESSLKEASFEKESTEAQSLEfvEGSQISEatyenle 135
Cdd:TIGR02168 211 KAERYKELKAELRELELALLVLrLEEL----------REELEELQEELKEAEEELEELTAELQE--LEEKLEE------- 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 136 qskskledeillleekleeERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNEN 215
Cdd:TIGR02168 272 -------------------LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 216 SQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLgEADDGNLDLDMKS 295
Cdd:TIGR02168 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL-NNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 296 GLENTAALDNQPKGALKKLiyaakLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQK 375
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKL-----EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 568979259 376 LQQKLKVITELyQENEMKLHRKLTVEENYRLEKEEKLSKVDEKIShATEELETC 429
Cdd:TIGR02168 487 LQARLDSLERL-QENLEGFSEGVKALLKNQSGLSGILGVLSELIS-VDEGYEAA 538
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
202-444 |
2.21e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.24 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 202 ERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVL 281
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 282 geaddgnLDLDMKSGLENTAAL---DNQPKGALKKLIYAAKLNASLKAlegernqvytQLSEVDQVKEDLTEHIKSLESK 358
Cdd:COG4942 110 -------LRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARRE----------QAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 359 QASLQSEKTEFESESQKLQQKLKvitelyqenemklhrkltveenyrlEKEEKLSKVDEKISHATEELETCRQRAKDLEE 438
Cdd:COG4942 173 RAELEALLAELEEERAALEALKA-------------------------ERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
....*.
gi 568979259 439 ELERTI 444
Cdd:COG4942 228 LIARLE 233
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
65-442 |
2.67e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 2.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 65 VGREKKLAlELSALIEEkckLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDE 144
Cdd:TIGR02168 673 LERRREIE-ELEEKIEE---LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 145 ILLLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFrifEINEERLkgaikDALN-ENSQLQESQK 223
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL---KALREAL-----DELRaELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 224 QLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLlkmkdwaavlgeaddgnldldmksglentaal 303
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI-------------------------------- 868
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 304 dnqpkgalkkliyaAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKqaslqseKTEFESESQKLQQKLKVI 383
Cdd:TIGR02168 869 --------------EELESELEALLNERASLEEALALLRSELEELSEELRELESK-------RSELRRELEELREKLAQL 927
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 384 TELYQENEMKLHRKL-TVEENYRLEKEEklskVDEKISHATEELETCRQRAKDLEEELER 442
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQeRLSEEYSLTLEE----AEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-486 |
4.41e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 4.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 156 RAKHSEQDELMADIS-KRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKE 234
Cdd:TIGR02168 216 KELKAELRELELALLvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 235 QVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKdwaavlgeaddgnldldmksglENTAALDNQPKGALKKL 314
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA----------------------EELAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 315 iyaAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKL 394
Cdd:TIGR02168 354 ---ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 395 hrkltvEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLE---EELERTIHSYQGQVISHEKKAHdnwlAARTLERN 471
Cdd:TIGR02168 431 ------EEAELKELQAELEELEEELEELQEELERLEEALEELReelEEAEQALDAAERELAQLQARLD----SLERLQEN 500
|
330
....*....|....*...
gi 568979259 472 LNDLR---KENAHNRQKL 486
Cdd:TIGR02168 501 LEGFSegvKALLKNQSGL 518
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
132-484 |
1.95e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 1.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 132 ENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMADISKRIQsledESKSLKSQVAEAKTTFRIFEINEERLKGAIKDa 211
Cdd:TIGR04523 169 EELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQ----KNKSLESQISELKKQNNQLKDNIEKKQQEINE- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 212 lnENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEesraQAEQALSEKESQIETLVTSLLKMKDWAavlgeadDGNLDL 291
Cdd:TIGR04523 244 --KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE----QNNKKIKELEKQLNQLKSEISDLNNQK-------EQDWNK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 292 DMKSGLENT----AALDNQPKGALKKLiyaAKLNASLKALEGERNQVYTQLSEVD-QVKEDLTEhIKSLESKQASLQSEK 366
Cdd:TIGR04523 311 ELKSELKNQekklEEIQNQISQNNKII---SQLNEQISQLKKELTNSESENSEKQrELEEKQNE-IEKLKKENQSYKQEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 367 TEFESESQKLQQKLKVITELYQENEMKLHrklTVEENYR-LEKEEKLSKVD-----EKISHATEE---LETCRQRAKDLE 437
Cdd:TIGR04523 387 KNLESQINDLESKIQNQEKLNQQKDEQIK---KLQQEKElLEKEIERLKETiiknnSEIKDLTNQdsvKELIIKNLDNTR 463
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 568979259 438 EELERTIHSYQGQVISHEKKAHDNwlaARTLERNLNDLRKENAHNRQ 484
Cdd:TIGR04523 464 ESLETQLKVLSRSINKIKQNLEQK---QKELKSKEKELKKLNEEKKE 507
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
202-391 |
5.83e-09 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 58.69 E-value: 5.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 202 ERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTsllKMKDWAAVL 281
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE---ELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 282 GEADDGNLDLDMKSGLENTA-ALDNQpkGALKKLiyAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQA 360
Cdd:COG3883 96 YRSGGSVSYLDVLLGSESFSdFLDRL--SALSKI--ADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190
....*....|....*....|....*....|.
gi 568979259 361 SLQSEKTEFESESQKLQQKLKVITELYQENE 391
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELE 202
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
83-478 |
1.39e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 58.58 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 83 CKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQ 162
Cdd:pfam05483 359 CSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKE 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 163 DELMAdiskRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVND---- 238
Cdd:pfam05483 439 QELIF----LLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDmtle 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 239 LDKQKVALEESRAQAEQALSekesQIETLVTSLLKMKDwaavlgEADDGNLDLDMKsGLENTAALDNQPKGALKKLIYAA 318
Cdd:pfam05483 515 LKKHQEDIINCKKQEERMLK----QIENLEEKEMNLRD------ELESVREEFIQK-GDEVKCKLDKSEENARSIEYEVL 583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 319 KLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSL------ESKQAS---LQSEKTEFESESQKlqQKLKVITELYQE 389
Cdd:pfam05483 584 KKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALkkkgsaENKQLNayeIKVNKLELELASAK--QKFEEIIDNYQK 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 390 nemKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSY-------QGQVISHEKKAHDNW 462
Cdd:pfam05483 662 ---EIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYdkiieerDSELGLYKNKEQEQS 738
|
410
....*....|....*.
gi 568979259 463 LAARTLERNLNDLRKE 478
Cdd:pfam05483 739 SAKAALEIELSNIKAE 754
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
67-343 |
2.65e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 2.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 67 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEAsfEKESTEAQSLEFVEGSQISEatyenLEQSKSKLEDEIL 146
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEEL--ELELEEAQAEEYELLAELAR-----LEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 147 LLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLL 226
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 227 QETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLvtsLLKMKDWAAVLGEADDGNLDLDmksgLENTAALDNQ 306
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL---EEEEEEEEEALEEAAEEEAELE----EEEEALLELL 465
|
250 260 270
....*....|....*....|....*....|....*..
gi 568979259 307 PKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQ 343
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
69-498 |
1.77e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 69 KKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLL 148
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 149 EEKLEEER---AKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGA--IKDALNENSQLQESQK 223
Cdd:PRK03918 248 ESLEGSKRkleEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELreIEKRLSRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 224 QLLQETEMMKEQVNDLDKQKVALE------ESRAQAEQALSEKESQIETLVTSL--LKMKDWAAVLGEADdgnldldmKS 295
Cdd:PRK03918 328 ERIKELEEKEERLEELKKKLKELEkrleelEERHELYEEAKAKKEELERLKKRLtgLTPEKLEKELEELE--------KA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 296 GLENTAALDN--QPKGALKKLIyaAKLNASLKALEGERNQVYTQLSEVDQvkEDLTEHIKSLESKQASLQSEKTEFESES 373
Cdd:PRK03918 400 KEEIEEEISKitARIGELKKEI--KELKKAIEELKKAKGKCPVCGRELTE--EHRKELLEEYTAELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 374 QKLQQKLKVItELYQENEMKLHRKLTVEENYRlEKEEKLSKVD-EKISHATEELETCRQRAKDLEEELERtihsyqgqVI 452
Cdd:PRK03918 476 RKLRKELREL-EKVLKKESELIKLKELAEQLK-ELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKS--------LK 545
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 568979259 453 SHEKKAHDNWLAARTLERNLNDLRKENAHNRQKLTETEFK-FELLEK 498
Cdd:PRK03918 546 KELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFEsVEELEE 592
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
72-380 |
2.00e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 2.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 72 ALELSALIEEKcklldKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSkskledeillleek 151
Cdd:COG1196 215 YRELKEELKEL-----EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE-------------- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 152 LEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAkttfrifEINEERLKGAIKDALNENSQLQESQKQLLQETEM 231
Cdd:COG1196 276 LEELELELEEAQAEEYELLAELARLEQDIARLEERRREL-------EERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 232 MKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDwAAVLGEADDGNLDLDMKSGLENTAALDNQpkgal 311
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR-AAAELAAQLEELEEAEEALLERLERLEEE----- 422
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568979259 312 kkliyAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKL 380
Cdd:COG1196 423 -----LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
71-499 |
2.66e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 71 LALELSALIEEKCKLL----DKVSIVQKEYEGLESSLKEAsfekESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEIL 146
Cdd:COG4717 44 RAMLLERLEKEADELFkpqgRKPELNLKELKELEEELKEA----EEKEEEYAELQEELEELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 147 LLEEKLeeeraKHSEQDELMADISKRIQSLEDESKSLKSQVAEakttfrifeinEERLKGAIKDALNENSQLQESQKQLL 226
Cdd:COG4717 120 KLEKLL-----QLLPLYQELEALEAELAELPERLEELEERLEE-----------LRELEEELEELEAELAELQEELEELL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 227 QET-EMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETL---VTSLLKMKDWAAVLGEADDGNLDLDMKSGLENTAA 302
Cdd:COG4717 184 EQLsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELeeeLEQLENELEAAALEERLKEARLLLLIAAALLALLG 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 303 LDNQPKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQK--LQQKL 380
Cdd:COG4717 264 LGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPeeLLELL 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 381 KVITELYQENE--MKLHRKLTVEEnYRLEKEEKLSKVDekishaTEELETCRQRAKDLEE--ELERTIHSYQGQVISHEK 456
Cdd:COG4717 344 DRIEELQELLReaEELEEELQLEE-LEQEIAALLAEAG------VEDEEELRAALEQAEEyqELKEELEELEEQLEELLG 416
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 568979259 457 KAHDNWLAA---------RTLERNLNDLRKENAHNRQKLTETEFKFELLEKD 499
Cdd:COG4717 417 ELEELLEALdeeeleeelEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
233-448 |
4.33e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 4.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 233 KEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLkmkDWAAVLGEADDgnlDLDMKSGLENTAALDNQpkgaLK 312
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERRE---ALQRLAEYSWD---EIDVASAEREIAELEAE----LE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 313 KLIyaaKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEktefesesqklQQKLKVITELYQENEM 392
Cdd:COG4913 679 RLD---ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE-----------LDELQDRLEAAEDLAR 744
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568979259 393 KLHRKLTVEENYRLEKEEKLSKVDEKIshaTEELETCRQRAKDLEEELERTIHSYQ 448
Cdd:COG4913 745 LELRALLEERFAAALGDAVERELRENL---EERIDALRARLNRAEEELERAMRAFN 797
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
67-478 |
9.09e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 9.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 67 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEIL 146
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 147 LLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLL 226
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 227 QETEMMKEQVNDLDkQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDW---------------------AAVLGEAD 285
Cdd:COG1196 470 EEAALLEAALAELL-EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavavligveaayeaalEAALAAAL 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 286 DGNLDLDMKSGLENTAALDNQPKGALKKL--------------------IYAAKLNASLKALEGERNQVYTQLSEVDQ-- 343
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkiraraalaaalargaiGAAVDLVASDLREADARYYVLGDTLLGRTlv 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 344 -----------VKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHRKLTVEENYRL-EKEEK 411
Cdd:COG1196 629 aarleaalrraVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEeEEERE 708
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568979259 412 LSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKE 478
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
66-456 |
1.40e-06 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 51.88 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 66 GREKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEI 145
Cdd:COG5185 180 EIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPESELEDLAQTSDKLEKLV 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 146 LLLEEKLEeerAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEE--------RLKGAIKDALNE-NS 216
Cdd:COG5185 260 EQNTDLRL---EKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESleeqlaaaEAEQELEESKREtET 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 217 QLQESQKQLLQETEMMKEQVNDLDKQK--VALEESRAQAEQALSEKESQIETLVTSLL-KMKDWAAVLGEADDgNLDLDM 293
Cdd:COG5185 337 GIQNLTAEIEQGQESLTENLEAIKEEIenIVGEVELSKSSEELDSFKDTIESTKESLDeIPQNQRGYAQEILA-TLEDTL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 294 KSGLENTAALDNQPKGALKKLIYAAKLnasLKALEGERNQVYTQLSevDQVKEDLTEHIKSLESkqaSLQSEKTEFESES 373
Cdd:COG5185 416 KAADRQIEELQRQIEQATSSNEEVSKL---LNELISELNKVMREAD--EESQSRLEEAYDEINR---SVRSKKEDLNEEL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 374 QKLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKL--SKVDEKISHATEElETCRQRAKDLEEELERTIhSYQGQV 451
Cdd:COG5185 488 TQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLkdFMRARGYAHILAL-ENLIPASELIQASNAKTD-GQAANL 565
|
....*
gi 568979259 452 ISHEK 456
Cdd:COG5185 566 RTAVI 570
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
87-502 |
1.50e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.03 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 87 DKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEatyENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELM 166
Cdd:pfam05483 240 KQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQD---ENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 167 ADI---SKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMmkeqvnDLDKQK 243
Cdd:pfam05483 317 EDLqiaTKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITM------ELQKKS 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 244 VALEEsraqAEQALSEKESQIETLVTSLlkmkdwaavlgeADDGNLdLDMKSGLENTAaldNQPKGALKKLIYAaklnas 323
Cdd:pfam05483 391 SELEE----MTKFKNNKEVELEELKKIL------------AEDEKL-LDEKKQFEKIA---EELKGKEQELIFL------ 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 324 LKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITElyQENEMKLHRKLTVEEN 403
Cdd:pfam05483 445 LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQ--EASDMTLELKKHQEDI 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 404 YRLEKEE-----KLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKE 478
Cdd:pfam05483 523 INCKKQEermlkQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQ 602
|
410 420
....*....|....*....|....
gi 568979259 479 NAHNRQKLTETEFKFELLEKDPYA 502
Cdd:pfam05483 603 IENKNKNIEELHQENKALKKKGSA 626
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
69-494 |
1.55e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 69 KKLALELSALIEEKCKlldKVSIVQKEYEGLESSLKEAsfeKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLL 148
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKK---AAEAAKAEAEAAADEAEAA---EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 149 EEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQE 228
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 229 TEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIEtlvtsllKMKDWAAVLGEADDGNLDLDMKSGLENTAALDNQPK 308
Cdd:PTZ00121 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA-------EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 309 GALKKLIYAAKLNASLKAlEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKvitelYQ 388
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKA-EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK-----KA 1628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 389 ENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEEL----ETCRQRAKDL--EEELERTIHSYQGQVISHEKKAHDNW 462
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEakkaEEDKKKAEEAkkAEEDEKKAAEALKKEAEEAKKAEELK 1708
|
410 420 430
....*....|....*....|....*....|..
gi 568979259 463 LAARTLERNLNDLRKENAHNRQKLTETEFKFE 494
Cdd:PTZ00121 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
156-484 |
1.66e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.76 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 156 RAKHSEQDELMADISKRIQSLedeskslKSQVAEAKTTFRIFEINEERLKgaikdalNENSQLQES-QKQLLQETEMMKE 234
Cdd:pfam12128 617 REKQAAAEEQLVQANGELEKA-------SREETFARTALKNARLDLRRLF-------DEKQSEKDKkNKALAERKDSANE 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 235 QVNDLDKQKVALEEsraQAEQALSEKESQIETLVTSllKMKDWAAVLGEADD--GNLDLDMKSGLENTAA----LDNQPK 308
Cdd:pfam12128 683 RLNSLEAQLKQLDK---KHQAWLEEQKEQKREARTE--KQAYWQVVEGALDAqlALLKAAIAARRSGAKAelkaLETWYK 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 309 GALKKL----IYAAKLNASLKALEG-------------------------ERNQVYTQLSEVDQVKEDLTEHiksLESKQ 359
Cdd:pfam12128 758 RDLASLgvdpDVIAKLKREIRTLERkieriavrrqevlryfdwyqetwlqRRPRLATQLSNIERAISELQQQ---LARLI 834
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 360 ASLQSEKTEFESESQKLQQKLKVITElyqenemkLHRKLTVEENY--RLEKEEKLSKVDEKISHATEELETCRQRAKDLE 437
Cdd:pfam12128 835 ADTKLRRAKLEMERKASEKQQVRLSE--------NLRGLRCEMSKlaTLKEDANSEQAQGSIGERLAQLEDLKLKRDYLS 906
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 568979259 438 EELERTIHSYQGQVISHEKKAHD-NWLAARTLERNLNDLRKENAHNRQ 484
Cdd:pfam12128 907 ESVKKYVEHFKNVIADHSGSGLAeTWESLREEDHYQNDKGIRLLDYRK 954
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
69-492 |
2.08e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 69 KKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEaqslEFVEGSQISEATYENLEQSKSKLEDEILLL 148
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE----ERHELYEEAKAKKEELERLKKRLTGLTPEK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 149 EEKLEEERAKHSEqdELMADISK---RIQSLEDESKSLKSQVAEAKTTFRIF-----EINEE-------RLKGAIKDALN 213
Cdd:PRK03918 389 LEKELEELEKAKE--EIEEEISKitaRIGELKKEIKELKKAIEELKKAKGKCpvcgrELTEEhrkelleEYTAELKRIEK 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 214 ENSQLQESQKQL---LQETEMMKEQVNDLDKQKVALEESRAQAE-------QALSEKESQIETLVTSLLKMKdwaavlGE 283
Cdd:PRK03918 467 ELKEIEEKERKLrkeLRELEKVLKKESELIKLKELAEQLKELEEklkkynlEELEKKAEEYEKLKEKLIKLK------GE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 284 ADDGNLDLDMKSGLEntaaldnqpkgalKKLiyaAKLNASLKALEGERNQVYTQLSE-----VDQVKEDLTE-------- 350
Cdd:PRK03918 541 IKSLKKELEKLEELK-------------KKL---AELEKKLDELEEELAELLKELEElgfesVEELEERLKElepfyney 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 351 -----HIKSLESKQASLQSEKTEFESESQKLQQKLKVITELyqENEMKLHRKLTVEENYRlEKEEKLSKVDEKISHATEE 425
Cdd:PRK03918 605 lelkdAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL--RKELEELEKKYSEEEYE-ELREEYLELSRELAGLRAE 681
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568979259 426 LEtcrqRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERnLNDLRKENAHNRQKLTETEFK 492
Cdd:PRK03918 682 LE----ELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER-VEELREKVKKYKALLKERALS 743
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
57-385 |
2.13e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.59 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 57 RSIRSRFYVGREKKLALELSALI--------EEKCKLLDKVSIVQKEYEGLesslkeasfekesteaQSLEfvegSQISE 128
Cdd:TIGR01612 662 KSELSKIYEDDIDALYNELSSIVkenaidntEDKAKLDDLKSKIDKEYDKI----------------QNME----TATVE 721
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 129 ATYENLEQSKSKLEdeillleekleeerakhseqdELMADISKRIQSleDESKSLKSQVAEakttfriFEINEERLKGAI 208
Cdd:TIGR01612 722 LHLSNIENKKNELL---------------------DIIVEIKKHIHG--EINKDLNKILED-------FKNKEKELSNKI 771
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 209 KDALNENSQLQESQKQLLQETEMMKEQVNdLDKQKValEESRAQAEQA------LSEKESQIETLVTSLLKMKDwaAVLG 282
Cdd:TIGR01612 772 NDYAKEKDELNKYKSKISEIKNHYNDQIN-IDNIKD--EDAKQNYDKSkeyiktISIKEDEIFKIINEMKFMKD--DFLN 846
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 283 EAD-----DGNLDLDMKSGLENTAALDNQPKGAL--KKL-IYAAKLNAS-------LKALEGERNQVYTqLSEVD---QV 344
Cdd:TIGR01612 847 KVDkfinfENNCKEKIDSEHEQFAELTNKIKAEIsdDKLnDYEKKFNDSkslineiNKSIEEEYQNINT-LKKVDeyiKI 925
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 568979259 345 KEDLTEHIKSLESKQASLQsektefesesQKLQQKLKVITE 385
Cdd:TIGR01612 926 CENTKESIEKFHNKQNILK----------EILNKNIDTIKE 956
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
317-490 |
2.50e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 317 AAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITEL---YQENEMK 393
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERrreLEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 394 LHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTihsyQGQVISHEKKAHDNWLAARTLERNLN 473
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA----EAELAEAEEELEELAEELLEALRAAA 396
|
170
....*....|....*..
gi 568979259 474 DLRKENAHNRQKLTETE 490
Cdd:COG1196 397 ELAAQLEELEEAEEALL 413
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
71-381 |
2.66e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 2.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 71 LALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFvegsqisEATYENLEQSKSklEDEILLLEE 150
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL-------EEALNDLEARLS--HSRIPEIQA 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 151 KLEEERAKHSEQDELMADISKRIQS-------LEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQK 223
Cdd:TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRltlekeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 224 QLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLlkmkdwAAVLGEADDgnLDLDMKSGLENTAAL 303
Cdd:TIGR02169 879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL------EALEEELSE--IEDPKGEDEEIPEEE 950
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568979259 304 DNQPKGALKKLiyaaKLNASLKALEGERNQVytqLSEVDQVKEDLTEhiksLESKQASLQSEKTEFESESQKLQQKLK 381
Cdd:TIGR02169 951 LSLEDVQAELQ----RVEEEIRALEPVNMLA---IQEYEEVLKRLDE----LKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
69-498 |
3.47e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 3.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 69 KKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEfVEGSQISEATYENLEQSKSKLEDEILLL 148
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-LKELKEKAEEYIKLSEFYEEYLDELREI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 149 EEKLEEERAKHSEQDELMADISK---RIQSLEDESKSLKSQVAEAKTTFRIFEineerlkgaikDALNENSQLQESQKQL 225
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEkeeRLEELKKKLKELEKRLEELEERHELYE-----------EAKAKKEELERLKKRL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 226 LQET-EMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAV-------LGEADDGNL----DLDM 293
Cdd:PRK03918 382 TGLTpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgreLTEEHRKELleeyTAEL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 294 KSGLENTAALDNQPKgalkkliyaaKLNASLKALEGERNQVYTQLSEvdqvkEDLTEHIKSLESKQASLQSEK-----TE 368
Cdd:PRK03918 462 KRIEKELKEIEEKER----------KLRKELRELEKVLKKESELIKL-----KELAEQLKELEEKLKKYNLEElekkaEE 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 369 FE---SESQKLQQKLKVI-TELYQENEMKlhRKLTVEENYRLEKEEKLSKVDEKIshateeletcRQRAKDLEEELERTI 444
Cdd:PRK03918 527 YEklkEKLIKLKGEIKSLkKELEKLEELK--KKLAELEKKLDELEEELAELLKEL----------EELGFESVEELEERL 594
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568979259 445 HSYqgqvisheKKAHDNWLAA-------RTLERNLNDLRKENAHNRQKLTETEFKFELLEK 498
Cdd:PRK03918 595 KEL--------EPFYNEYLELkdaekelEREEKELKKLEEELDKAFEELAETEKRLEELRK 647
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
325-442 |
4.43e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.24 E-value: 4.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 325 KALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFEsesQKLQQKLKVITELyqENEMKLHRKltvEENY 404
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELE---AELEEKDERIERL--ERELSEARS---EERR 459
|
90 100 110
....*....|....*....|....*....|....*...
gi 568979259 405 RLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELER 442
Cdd:COG2433 460 EIRKDREISRLDREIERLERELEEERERIEELKRKLER 497
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
98-441 |
6.24e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 6.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 98 GLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKskleDEILLLEEKLEEERAKHSEQDELMADISKRIQSLE 177
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR----EELETLEAEIEDLRETIAETEREREELAEEVRDLR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 178 DESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQE-------SQKQLLQETEMMKEQVNDLDKQKVALEESR 250
Cdd:PRK02224 286 ERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDrleecrvAAQAHNEEAESLREDADDLEERAEELREEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 251 AQAEQALSEKESQIETLVTSLLKMKDWAAVLGEA-DDGNLDLDmksGLENTAALDNQPKGALKKLIyaAKLNASLKALEG 329
Cdd:PRK02224 366 AELESELEEAREAVEDRREEIEELEEEIEELRERfGDAPVDLG---NAEDFLEELREERDELRERE--AELEATLRTARE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 330 ERNQVYT---------------------QLSEVDQVKEDLTEHIKSLESKQASLQS------EKTEFESESQKLQQKLKV 382
Cdd:PRK02224 441 RVEEAEAlleagkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEErleraeDLVEAEDRIERLEERRED 520
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568979259 383 ITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHAT---EELETCRQRAKDLEEELE 441
Cdd:PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAeaeEEAEEAREEVAELNSKLA 582
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
68-498 |
1.02e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 68 EKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLK-------EASFEKESTEAQSLEFVEGSQISEATYENLEQSKSK 140
Cdd:pfam02463 295 EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKkekeeieELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEE 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 141 LEDEILLLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQE 220
Cdd:pfam02463 375 LLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 221 SQKQLLQETEMMKEQVNDL--DKQKVALEESRAQAEQALSEKE-SQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSGL 297
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLlkETQLVKLQEQLELLLSRQKLEErSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDL 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 298 ENTAAldnqpKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKeDLTEHIKSLESKQASLQSEKTEFES--ESQK 375
Cdd:pfam02463 535 GVAVE-----NYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA-RKLRLLIPKLKLPLKSIAVLEIDPIlnLAQL 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 376 LQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLE-----------------E 438
Cdd:pfam02463 609 DKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSEltkelleiqelqekaesE 688
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 439 ELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKENAHNRQKLTETEFKFELLEK 498
Cdd:pfam02463 689 LAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEE 748
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
199-499 |
1.25e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.86 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 199 INEERLKGaikdaLNENSQLQESQKQLLQEtemmkeqvnDLDKQKVALEESRAQAEQALSEKESQIETLVTsllKMKDWA 278
Cdd:PHA02562 171 LNKDKIRE-----LNQQIQTLDMKIDHIQQ---------QIKTYNKNIEEQRKKNGENIARKQNKYDELVE---EAKTIK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 279 AVLGEADDGNLDLDMKSGlentaaldnQPKGALKKL-IYAAKLNASLKALEGERNqVYTQLSEVDQVKEDLTEHIKSLES 357
Cdd:PHA02562 234 AEIEELTDELLNLVMDIE---------DPSAALNKLnTAAAKIKSKIEQFQKVIK-MYEKGGVCPTCTQQISEGPDRITK 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 358 KQASLQSEKTEFESESQKlQQKLKVITELYQENEMKLHrkltveenyrlEKEEKLSKVDEKIShateeleTCRQRAKDLE 437
Cdd:PHA02562 304 IKDKLKELQHSLEKLDTA-IDELEEIMDEFNEQSKKLL-----------ELKNKISTNKQSLI-------TLVDKAKKVK 364
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568979259 438 EELERTihsyQGQVISHEKkahdnwlAARTLERNLNDLRKENAHNRQKLTETEFKFELLeKD 499
Cdd:PHA02562 365 AAIEEL----QAEFVDNAE-------ELAKLQDELDKIVKTKSELVKEKYHRGIVTDLL-KD 414
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
71-413 |
1.29e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 71 LALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLLEE 150
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 151 KLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETE 230
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 231 MMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSL--LKMKDWAAVLGEaddgnldldmksglentaaldnqpk 308
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLeeAELKELQAELEE------------------------- 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 309 galkkliyaakLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQ 388
Cdd:TIGR02168 445 -----------LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
330 340 350
....*....|....*....|....*....|.
gi 568979259 389 ENEMK------LHRKLTVEENYRLEKEEKLS 413
Cdd:TIGR02168 514 NQSGLsgilgvLSELISVDEGYEAAIEAALG 544
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
156-498 |
1.95e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.25 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 156 RAKHSEQDELMADISKRiqSLEDESKSLKSQVAEAKTtfRIFEI------NEERLKGAIKDALNENSQLQESQKQLLQET 229
Cdd:pfam01576 195 RLKKEEKGRQELEKAKR--KLEGESTDLQEQIAELQA--QIAELraqlakKEEELQAALARLEEETAQKNNALKKIRELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 230 EMMKEQVNDLDKQKVAleesRAQAEQALSEKESQIETLVTSLLKMKDWAAV---LGEADDGNLDLDMKSGLENTAALDNQ 306
Cdd:pfam01576 271 AQISELQEDLESERAA----RNKAEKQRRDLGEELEALKTELEDTLDTTAAqqeLRSKREQEVTELKKALEEETRSHEAQ 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 307 PKGALKKLIYA---------------AKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQS------- 364
Cdd:pfam01576 347 LQEMRQKHTQAleelteqleqakrnkANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQArlseser 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 365 EKTEFESESQKLQQKLKVITELYQENEMKLHrkltveenyRLEKEekLSKVDEKIsHATEEL--ETCRQ------RAKDL 436
Cdd:pfam01576 427 QRAELAEKLSKLQSELESVSSLLNEAEGKNI---------KLSKD--VSSLESQL-QDTQELlqEETRQklnlstRLRQL 494
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568979259 437 EEE-----------------LERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKENAHNRQKLTETEFKFELLEK 498
Cdd:pfam01576 495 EDErnslqeqleeeeeakrnVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEK 573
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
166-389 |
2.03e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 166 MADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINeerlkgaikdalNENSQLQESQKQLLQETEMMKEQVNDLDKQKVA 245
Cdd:COG3206 170 REEARKALEFLEEQLPELRKELEEAEAALEEFRQK------------NGLVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 246 LEESRAQAEQALSEKESQIETLVTSllkmkdwaAVLGEADDGNLDLDMKSGLENTAALDNQPKgalkkliyaaklnasLK 325
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQS--------PVIQQLRAQLAELEAELAELSARYTPNHPD---------------VI 294
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568979259 326 ALEGERNQVYTQL-SEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQE 389
Cdd:COG3206 295 ALRAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE 359
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
171-488 |
2.03e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 171 KRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENS---------------------------------- 216
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQelklkeqakkaleyyqlkekleleeeyllyldyl 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 217 QLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSG 296
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 297 LENTAALDNQPKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKL 376
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 377 QQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEK 456
Cdd:pfam02463 393 KEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
330 340 350
....*....|....*....|....*....|..
gi 568979259 457 KAHDNWLAARTLERNLNDLRKENAHNRQKLTE 488
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESK 504
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
68-499 |
2.87e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 68 EKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSlefvegsQISEAtyENLEQSKSKLEDEILL 147
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK-------KAEEA--KKADEAKKKAEEAKKA 1459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 148 LEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQllq 227
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA--- 1536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 228 ETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKmkdwAAVLGEADDGNLDLDMKSGLENTAALDNQP 307
Cdd:PTZ00121 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK----AEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 308 KGALKKLIYAAKLnaslKALEGERNQVytqlsevDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELY 387
Cdd:PTZ00121 1613 KKAEEAKIKAEEL----KKAEEEKKKV-------EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 388 QENEMKlhRKltVEENYRLEKEEKlsKVDEKISHATEELETCRQRAKDLEEelERTIHSYQGQVISHEKKAHDNWLAART 467
Cdd:PTZ00121 1682 KAEEDE--KK--AAEALKKEAEEA--KKAEELKKKEAEEKKKAEELKKAEE--ENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
410 420 430
....*....|....*....|....*....|....*.
gi 568979259 468 LERN----LNDLRKENAHNRQKLTETEFKFELLEKD 499
Cdd:PTZ00121 1754 EEKKkiahLKKEEEKKAEEIRKEKEAVIEEELDEED 1789
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
169-273 |
3.04e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.47 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 169 ISKRIQSLEDESKSLKSQV---AEAKTTFRIFEINEE--RLKGAIKDALNE-NSQLQESQKQLLQETEMMKEQVNDLDKQ 242
Cdd:PRK12704 29 AEAKIKEAEEEAKRILEEAkkeAEAIKKEALLEAKEEihKLRNEFEKELRErRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110
....*....|....*....|....*....|....
gi 568979259 243 KVALEESR---AQAEQALSEKESQIETLVTSLLK 273
Cdd:PRK12704 109 EEELEKKEkelEQKQQELEKKEEELEELIEEQLQ 142
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
171-478 |
3.16e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.81 E-value: 3.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 171 KRIQSLEDESKSLKSQVAEAKTTFrifeinEERLKGAIKDALNENSQLQESQKqllqETEMMKEQVNDLDKQKVALEESR 250
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMY------EDKIEELEKQLVLANSELTEART----ERDQFSQESGNLDDQLQKLLADL 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 251 AQAEQALSEKESQIETLvtsllkmkdWAAVLG----------EADDGNLDLDMKSGLenTAALDNQPKGALKKLIYAAK- 319
Cdd:pfam15921 387 HKREKELSLEKEQNKRL---------WDRDTGnsitidhlrrELDDRNMEVQRLEAL--LKAMKSECQGQMERQMAAIQg 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 320 LNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLhrklt 399
Cdd:pfam15921 456 KNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKL----- 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 400 vEENYRLEKEEklskvdEKISHATEELETCRQRAKDLE---EELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLR 476
Cdd:pfam15921 531 -QELQHLKNEG------DHLRNVQTECEALKLQMAEKDkviEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR 603
|
..
gi 568979259 477 KE 478
Cdd:pfam15921 604 LE 605
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
74-500 |
4.02e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 4.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 74 ELSALIEEKCKLLDKVSIVQKEYEGLESSLKE-----ASFEKESTEAQSLEFVEGSQISEATYENLEQskskledeilll 148
Cdd:pfam12128 355 ELENLEERLKALTGKHQDVTAKYNRRRSKIKEqnnrdIAGIKDKLAKIREARDRQLAVAEDDLQALES------------ 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 149 eekleEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQE 228
Cdd:pfam12128 423 -----ELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQA 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 229 TEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLK-MKDWAAVLGEADDGNL----DLDmksglenTAAL 303
Cdd:pfam12128 498 RKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKeAPDWEQSIGKVISPELlhrtDLD-------PEVW 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 304 DNQPKGALKklIYAAKLNasLKALEGERNQVYTQL--SEVDQVKEDLtehiKSLESKQASLQSEKTEFESESQKLQQKLK 381
Cdd:pfam12128 571 DGSVGGELN--LYGVKLD--LKRIDVPEWAASEEElrERLDKAEEAL----QSAREKQAAAEEQLVQANGELEKASREET 642
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 382 VITELYQENEMKLHRKLTVEENYRLEKEEKLSkvdEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDN 461
Cdd:pfam12128 643 FARTALKNARLDLRRLFDEKQSEKDKKNKALA---ERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAY 719
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 568979259 462 WLAARTLERNLNDL-------RKENAHNRQKLTETEFKFELLEKDP 500
Cdd:pfam12128 720 WQVVEGALDAQLALlkaaiaaRRSGAKAELKALETWYKRDLASLGV 765
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
171-499 |
4.14e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 4.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 171 KRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESr 250
Cdd:TIGR04523 54 KELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQ- 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 251 aqaeqaLSEKESQIETLVTSLLKMKDWAAVLGEADDgnlDLD-MKSGLENTaaldnqpKGALKKLIyaAKLNASLKALEG 329
Cdd:TIGR04523 133 ------KKENKKNIDKFLTEIKKKEKELEKLNNKYN---DLKkQKEELENE-------LNLLEKEK--LNIQKNIDKIKN 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 330 ERNQVYTQLSEVDQVKED---LTEHIKSLESKQASL-------QSEKTEFESESQKLQQKLKVITELYQENEMKLHRK-L 398
Cdd:TIGR04523 195 KLLKLELLLSNLKKKIQKnksLESQISELKKQNNQLkdniekkQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKqK 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 399 TVEENYRL--EKEEKLSKVDEKIShateELEtcRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLR 476
Cdd:TIGR04523 275 ELEQNNKKikELEKQLNQLKSEIS----DLN--NQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLK 348
|
330 340 350
....*....|....*....|....*....|
gi 568979259 477 KE-------NAHNRQKLTETEFKFELLEKD 499
Cdd:TIGR04523 349 KEltnseseNSEKQRELEEKQNEIEKLKKE 378
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
53-488 |
4.57e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 4.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 53 WRGFRSIRSRF-YVGREKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVE------GSQ 125
Cdd:TIGR00606 556 SRHSDELTSLLgYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDklfdvcGSQ 635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 126 ISEATYENLEQSKSKLEDEILLLEEKLEEERA---------------------KHSEQDELMADISKRIQSLEDESKSLK 184
Cdd:TIGR00606 636 DEESDLERLKEEIEKSSKQRAMLAGATAVYSQfitqltdenqsccpvcqrvfqTEAELQEFISDLQSKLRLAPDKLKSTE 715
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 185 SQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQEtemMKEQVNDLDKQKVALEESRAQAEQAlseKESQI 264
Cdd:TIGR00606 716 SELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRD---IQRLKNDIEEQETLLGTIMPEEESA---KVCLT 789
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 265 ETLVTSLLKM------KDWAAVLGEADDGNLDLDM----KSGLENTAALDN--QPKGALKKLI-----YAAKLNASLKAL 327
Cdd:TIGR00606 790 DVTIMERFQMelkdveRKIAQQAAKLQGSDLDRTVqqvnQEKQEKQHELDTvvSKIELNRKLIqdqqeQIQHLKSKTNEL 869
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 328 EGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLkvitelyQENEMKLHRKLTVEENYRLE 407
Cdd:TIGR00606 870 KSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQ-------QEKEELISSKETSNKKAQDK 942
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 408 KEEKLSKVDEKISHATE-------------------------ELETCRQRAKDLEEELERTIHSYQGQVIsHEKKAHDNw 462
Cdd:TIGR00606 943 VNDIKEKVKNIHGYMKDienkiqdgkddylkqketelntvnaQLEECEKHQEKINEDMRLMRQDIDTQKI-QERWLQDN- 1020
|
490 500
....*....|....*....|....*.
gi 568979259 463 LAARTLERNLNDLRKENAHNRQKLTE 488
Cdd:TIGR00606 1021 LTLRKRENELKEVEEELKQHLKEMGQ 1046
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
74-442 |
7.45e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 7.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 74 ELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLLEEKLE 153
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 154 EERA---KHSEQDELM----ADISKRIQSLEDESKSLKSQVAEAKTTFR-----IFEINEE--RLKGAIKDALNENSQLQ 219
Cdd:PRK02224 332 ECRVaaqAHNEEAESLredaDDLEERAEELREEAAELESELEEAREAVEdrreeIEELEEEieELRERFGDAPVDLGNAE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 220 ESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQ---------------------ALSEKESQIETLVTSLLKMKDWA 278
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEV 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 279 AVLGEADDGNLDL----DMKSGLENTAA-----LDNQPKGALKKLIYAAKLNASLKALEGE----RNQVYTQLSEVDQVK 345
Cdd:PRK02224 492 EEVEERLERAEDLveaeDRIERLEERREdleelIAERRETIEEKRERAEELRERAAELEAEaeekREAAAEAEEEAEEAR 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 346 E----------DLTEHIKSLEsKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKL----HRKLTVEENY---RLEK 408
Cdd:PRK02224 572 EevaelnsklaELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLaekrERKRELEAEFdeaRIEE 650
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 568979259 409 --------EEKLSKVDEKISHATEELETCRQRAKDLEEELER 442
Cdd:PRK02224 651 aredkeraEEYLEQVEEKLDELREERDDLQAEIGAVENELEE 692
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
67-442 |
7.87e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 7.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 67 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEIL 146
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 147 LLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLL 226
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 227 QETEMMKEQVNDLDKQKV----------------ALEESRAQAEQALSEKESQIETLVTSLLKMK--------------- 275
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLagavavligveaayeaALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratflpldkira 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 276 -------------DWAAVLGEADDGNLDLDMKSGLENTAALDNQPKGALKKLIYAAKLNASLKALEGERNQVY------- 335
Cdd:COG1196 585 raalaaalargaiGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSaggsltg 664
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 336 ----TQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHRKLTVEENYR---LEK 408
Cdd:COG1196 665 gsrrELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLeelLEE 744
|
410 420 430
....*....|....*....|....*....|....
gi 568979259 409 EEKLSKVDEKISHATEELETCRQRAKDLEEELER 442
Cdd:COG1196 745 EELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
171-268 |
1.02e-04 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 44.11 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 171 KRIQSLEDESKSLKS---QVAEAKTTFRIFEINEE--RLKGAIKDALNE-NSQLQESQKQLLQETEMMKEQVNDLDKQKV 244
Cdd:pfam12072 27 AKIGSAEELAKRIIEeakKEAETKKKEALLEAKEEihKLRAEAERELKErRNELQRQERRLLQKEETLDRKDESLEKKEE 106
|
90 100
....*....|....*....|....*..
gi 568979259 245 AL---EESRAQAEQALSEKESQIETLV 268
Cdd:pfam12072 107 SLekkEKELEAQQQQLEEKEEELEELI 133
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
163-450 |
1.06e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.05 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 163 DELMADIS------KRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQV 236
Cdd:PRK01156 176 DMLRAEISnidyleEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYE 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 237 NDLDKQkvaleESRAQAEQALSEKESQIETLVTSLLKMKDWAA---VLGEADDGNLDLDMKSGLENTAALDNQPKGALKK 313
Cdd:PRK01156 256 SEIKTA-----ESDLSMELEKNNYYKELEERHMKIINDPVYKNrnyINDYFKYKNDIENKKQILSNIDAEINKYHAIIKK 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 314 LiyaaklnaslKALEGERNQVYTQLSEvdqvKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMK 393
Cdd:PRK01156 331 L----------SVLQKDYNDYIKKKSR----YDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEI 396
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 394 LHRKLTVEENYRLEKEEKLSKVDE---KISHATEELETCRQRakdlEEELERTIHSYQGQ 450
Cdd:PRK01156 397 LKIQEIDPDAIKKELNEINVKLQDissKVSSLNQRIRALREN----LDELSRNMEMLNGQ 452
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
324-504 |
1.21e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 324 LKALEGERNQVYTQLSEVDQvkedLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVItELYQENEmKLHRKLTvEEN 403
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAE----LQEELEELEEELEELEAELEELREELEKLEKLLQLL-PLYQELE-ALEAELA-ELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 404 YRLEK-EEKLskvdEKISHATEELETCRQRAKDLEEELERTIHSYQgqvISHEKKAHDNWLAARTLERNLNDLRKENAHN 482
Cdd:COG4717 146 ERLEElEERL----EELRELEEELEELEAELAELQEELEELLEQLS---LATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180
....*....|....*....|..
gi 568979259 483 RQKLTETEFKFELLEKDPYALD 504
Cdd:COG4717 219 QEELEELEEELEQLENELEAAA 240
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
70-498 |
1.76e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 70 KLALELSALIEEKCKLLDKVSIVQKEYEGLE---SSLKEASFEKESTEAQSLEFVEGSQisEATYENLEQSKSKLEDEIL 146
Cdd:TIGR00606 420 KERLKQEQADEIRDEKKGLGRTIELKKEILEkkqEELKFVIKELQQLEGSSDRILELDQ--ELRKAERELSKAEKNSLTE 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 147 LLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKS--QVAEAKTTF--RIFEIN---EERLKGAIKDALNEnSQLQ 219
Cdd:TIGR00606 498 TLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQmeMLTKDKMDKdeQIRKIKsrhSDELTSLLGYFPNK-KQLE 576
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 220 ESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVlgEADDGNLDLDMKSGLEN 299
Cdd:TIGR00606 577 DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDE--ESDLERLKEEIEKSSKQ 654
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 300 TAALdnqpkgALKKLIYAAKLNASLkalegERNQVYTQLSEVD-QVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQ 378
Cdd:TIGR00606 655 RAML------AGATAVYSQFITQLT-----DENQSCCPVCQRVfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEK 723
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 379 KLKVITELY--QENEMKLHRKLTVEENYRLEK-EEKLSKVDEKISHATEELETC---RQRAKDLEEELErTIHSYQGQVI 452
Cdd:TIGR00606 724 RRDEMLGLApgRQSIIDLKEKEIPELRNKLQKvNRDIQRLKNDIEEQETLLGTImpeEESAKVCLTDVT-IMERFQMELK 802
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 568979259 453 SHEKKAHDnwLAART----LERNLNDLRKENAHNRQKLTETEFKFELLEK 498
Cdd:TIGR00606 803 DVERKIAQ--QAAKLqgsdLDRTVQQVNQEKQEKQHELDTVVSKIELNRK 850
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
67-505 |
2.31e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.07 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 67 REKKLaLELSALIEEKCKLLDKVSIVQKEYEGlESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEIL 146
Cdd:COG5022 932 RLKKL-LNNIDLEEGPSIEYVKLPELNKLHEV-ESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYG 1009
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 147 LLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEE--RLKGAIKDALNENSQL--QESQ 222
Cdd:COG5022 1010 ALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARykALKLRRENSLLDDKQLyqLEST 1089
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 223 KQLLQETEMMKEQVNDLDKQKVALEESRAQAEQ----ALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSGLE 298
Cdd:COG5022 1090 ENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMiklnLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALP 1169
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 299 NTAALDNQPKgalKKLIYAAKLNASLKALEgernqvytqlSEVdqvkEDLTEHIKSLESKQASLQSEKtefeSESQKLQQ 378
Cdd:COG5022 1170 SPPPFAALSE---KRLYQSALYDEKSKLSS----------SEV----NDLKNELIALFSKIFSGWPRG----DKLKKLIS 1228
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 379 KLKVITELYQenemklhrKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSY-------QGQV 451
Cdd:COG5022 1229 EGWVPTEYST--------SLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLlqyinvgLFNA 1300
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568979259 452 ISHEKKAHdNWLAARTLERNLNDL-----RKENAH---NRQKLTETEFKFELLEKDPYALDV 505
Cdd:COG5022 1301 LRTKASSL-RWKSATEVNYNSEELddwcrEFEISDvdeELEELIQAVKVLQLLKDDLNKLDE 1361
|
|
| PRK14473 |
PRK14473 |
F0F1 ATP synthase subunit B; Provisional |
170-269 |
2.37e-04 |
|
F0F1 ATP synthase subunit B; Provisional
Pssm-ID: 172948 [Multi-domain] Cd Length: 164 Bit Score: 42.60 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 170 SKRIQSLEDESKSLKSQVAEAKTTFrifeinEERLKGAIKDALNENSQLQESQKQllQETEMMKEQVNDLDKQKvalEES 249
Cdd:PRK14473 41 TRRIEESLRDAEKVREQLANAKRDY------EAELAKARQEAAKIVAQAQERARA--QEAEIIAQARREAEKIK---EEA 109
|
90 100
....*....|....*....|....
gi 568979259 250 RAQAEQ----ALSEKESQIETLVT 269
Cdd:PRK14473 110 RAQAEQerqrMLSELKSQIADLVT 133
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
156-492 |
2.75e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.43 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 156 RAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFrifEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQ 235
Cdd:pfam10174 351 RLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDML---DVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSL 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 236 VNDLDKQKVALeesrAQAEQALSEKESQIETLVTSllKMKDWAAVLGEADDGNLDL-DMKSGL--------ENTAALDNQ 306
Cdd:pfam10174 428 QTDSSNTDTAL----TTLEEALSEKERIIERLKEQ--REREDRERLEELESLKKENkDLKEKVsalqpeltEKESSLIDL 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 307 PKGALKKLIYAAKLNASLKALEGE-----------RNQVYT--QLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESES 373
Cdd:pfam10174 502 KEHASSLASSGLKKDSKLKSLEIAveqkkeecsklENQLKKahNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEV 581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 374 QKLQQKLKvitelyqenEMklhrkltveENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTihsyQGQVIS 453
Cdd:pfam10174 582 ERLLGILR---------EV---------ENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKK----GAQLLE 639
|
330 340 350
....*....|....*....|....*....|....*....
gi 568979259 454 HEKKAHDNwLAARTLERNLNDLRKENAHNRQKLTETEFK 492
Cdd:pfam10174 640 EARRREDN-LADNSQQLQLEELMGALEKTRQELDATKAR 677
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
318-465 |
2.76e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 318 AKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFES---------ESQKLQQKLKvitelYQ 388
Cdd:COG1579 27 KELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEqlgnvrnnkEYEALQKEIE-----SL 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568979259 389 ENEMKLHRKLTVEENYRLE-KEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAA 465
Cdd:COG1579 102 KRRISDLEDEILELMERIEeLEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLAL 179
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
67-490 |
2.83e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 67 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFE--KESTEAQSLEFVEGSQISEATY-ENLEQSKSKLED 143
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRtsAFRDLQGQLAHAKKQQELQQRYaELCAAAITCTAQ 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 144 EILLLEEKLEEERAKHSEQDELMADIsKRIQSLEDESKSLKSQVA-EAKTTFRIFEINEERLKGAIKDALNENS------ 216
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLQTK-EQIHLQETRKKAVVLARLlELQEEPCPLCGSCIHPNPARQDIDNPGPltrrmq 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 217 QLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSG 296
Cdd:TIGR00618 532 RGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 297 LENTAALDN-QPKGALKKLI-----YAAKLNASLKALEGErnqvytqlsEVDQVKEDLTEHIKSLESKQASLQSEKTEFE 370
Cdd:TIGR00618 612 CEQHALLRKlQPEQDLQDVRlhlqqCSQELALKLTALHAL---------QLTLTQERVREHALSIRVLPKELLASRQLAL 682
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 371 SESQKLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIhsyQGQ 450
Cdd:TIGR00618 683 QKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVL---KAR 759
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 568979259 451 VISHEKKAHDNWLAART------LERNLNDLRKENAHNRQKLTETE 490
Cdd:TIGR00618 760 TEAHFNNNEEVTAALQTgaelshLAAEIQFFNRLREEDTHLLKTLE 805
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
163-447 |
3.04e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.66 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 163 DELMADISKRiQSLEDESKSLKSQVAEAKTTFRIFE---------INEERLKGAIKDALNENSQL----QESQKQLLQET 229
Cdd:TIGR01612 1486 NELKEHIDKS-KGCKDEADKNAKAIEKNKELFEQYKkdvtellnkYSALAIKNKFAKTKKDSEIIikeiKDAHKKFILEA 1564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 230 EMMKEQVNDLDKQKVALEESRA---QAEQALSEKESQIETLVTSLLKMKDwaavlgeaddgnldldmksglentaaldnq 306
Cdd:TIGR01612 1565 EKSEQKIKEIKKEKFRIEDDAAkndKSNKAAIDIQLSLENFENKFLKISD------------------------------ 1614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 307 pkgaLKKliyaaKLNASLKALEGERNQVY--------TQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFEsesqKLQQ 378
Cdd:TIGR01612 1615 ----IKK-----KINDCLKETESIEKKISsfsidsqdTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELD----ELDS 1681
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568979259 379 KLKVItelyqENEMKLHRKltveeNYRLEKEEklsKVDEKISHATEELETCRQRakdLEEELERTIHSY 447
Cdd:TIGR01612 1682 EIEKI-----EIDVDQHKK-----NYEIGIIE---KIKEIAIANKEEIESIKEL---IEPTIENLISSF 1734
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
167-460 |
3.12e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 167 ADISKRIQSLEDESKSLKSQvaeaKTTFRIFEINEERLKGAIKDALNENSQLQESQK------QLLQET----------- 229
Cdd:pfam05483 99 AELKQKENKLQENRKIIEAQ----RKAIQELQFENEKVSLKLEEEIQENKDLIKENNatrhlcNLLKETcarsaektkky 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 230 EMMKEQV--------NDLDKQKVALEESRAQAEQA-------------------------LSEKESQIETLVTSLL---- 272
Cdd:pfam05483 175 EYEREETrqvymdlnNNIEKMILAFEELRVQAENArlemhfklkedhekiqhleeeykkeINDKEKQVSLLLIQITeken 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 273 KMKDWAAVLGEADDGNLDLDMKSGL--ENTAALdNQPKGALKKLIYAAKLN-----ASLKALEgERNQVYTQlsEVDQVK 345
Cdd:pfam05483 255 KMKDLTFLLEESRDKANQLEEKTKLqdENLKEL-IEKKDHLTKELEDIKMSlqrsmSTQKALE-EDLQIATK--TICQLT 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 346 EDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLhRKLTVEENYRLEKEEKLSKVDEKISHATEE 425
Cdd:pfam05483 331 EEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQL-KIITMELQKKSSELEEMTKFKNNKEVELEE 409
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 568979259 426 LETC----------RQRAKDLEEELERTIHSYQGQVISHEKKAHD 460
Cdd:pfam05483 410 LKKIlaedeklldeKKQFEKIAEELKGKEQELIFLLQAREKEIHD 454
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
166-497 |
3.84e-04 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 44.06 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 166 MADISKRIQSLEDESKSLKsqVAEAKTtfrifEIN--EERLKGA---IKDALNENSQLQESQKQLLQETEMMKEQVNDLD 240
Cdd:PRK04778 81 LPDIEEQLFEAEELNDKFR--FRKAKH-----EINeiESLLDLIeedIEQILEELQELLESEEKNREEVEQLKDLYRELR 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 241 KQkvaLEESRAQAEQALSEKESQIETLVTSLLKMKDwaavlgEADDGN--------LDLDMKsglenTAALDNQ----PK 308
Cdd:PRK04778 154 KS---LLANRFSFGPALDELEKQLENLEEEFSQFVE------LTESGDyveareilDQLEEE-----LAALEQImeeiPE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 309 GaLKKLiyAAKLNASLKALEgernQVYTQLSE---------VDQVKEDLTEHIKSLESKQASLqsEKTEFESESQKLQQK 379
Cdd:PRK04778 220 L-LKEL--QTELPDQLQELK----AGYRELVEegyhldhldIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQER 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 380 lkvITELYQ--ENEMKLHRKLtveenyrlekEEKLSKVDEKISHATEEletcrqrAKDLEEELERTIHSYQgqvISHEKK 457
Cdd:PRK04778 291 ---IDQLYDilEREVKARKYV----------EKNSDTLPDFLEHAKEQ-------NKELKEEIDRVKQSYT---LNESEL 347
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 568979259 458 AHdnwlaARTLERNLNDLRKENAHNRQKLTETEFKFELLE 497
Cdd:PRK04778 348 ES-----VRQLEKQLESLEKQYDEITERIAEQEIAYSELQ 382
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
173-391 |
4.13e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 173 IQSLEDESKSLKSQVAEAKTTFRIFEiNEERLKGAIKDALNENSQLQesqKQLLQETEMMKEQVNDLDKQKVALEESRAQ 252
Cdd:PRK11281 41 VQAQLDALNKQKLLEAEDKLVQQDLE-QTLALLDKIDRQKEETEQLK---QQLAQAPAKLRQAQAELEALKDDNDEETRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 253 AEQALS--EKESQIETLVTSLlkmKDWAAVLGEAddgNLDL------------DMKSGLENTAALDNQPKG--ALKKLIY 316
Cdd:PRK11281 117 TLSTLSlrQLESRLAQTLDQL---QNAQNDLAEY---NSQLvslqtqperaqaALYANSQRLQQIRNLLKGgkVGGKALR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 317 A---AKLNASLKALEGE----RN--QVYTQLSEVDQVKEDL-TEHIKSLESKQASLQ----------SEKTEFESESQKL 376
Cdd:PRK11281 191 PsqrVLLQAEQALLNAQndlqRKslEGNTQLQDLLQKQRDYlTARIQRLEHQLQLLQeainskrltlSEKTVQEAQSQDE 270
|
250
....*....|....*
gi 568979259 377 QQKLKVITELYQENE 391
Cdd:PRK11281 271 AARIQANPLVAQELE 285
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
164-359 |
4.86e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 4.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 164 ELMADISKRIQSLEdESKSLKSQVAEAKTTFRIFEINEERL---KGAIKDALNEN--SQLQESQKQLLQETEMMKEQVND 238
Cdd:COG4913 242 EALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALrlwFAQRRLELLEAelEELRAELARLEAELERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 239 LDKQKVALEESRAQA--------EQALSEKESQIETLVTSLLKMKDWAAVLGEAddgnLDLDMKSGLENTAALDNQpkga 310
Cdd:COG4913 321 LREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLAALGLP----LPASAEEFAALRAEAAAL---- 392
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568979259 311 lkkliyAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQ 359
Cdd:COG4913 393 ------LEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
161-499 |
4.87e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 4.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 161 EQDELMADISKRIQSLEDESkslkSQVAEAKTTFrifeinEERL--KGAIKDALNEnsQLQESQKQLLQETEMMKEQVND 238
Cdd:pfam10174 412 DKDKQLAGLKERVKSLQTDS----SNTDTALTTL------EEALseKERIIERLKE--QREREDRERLEELESLKKENKD 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 239 LDKQKVALEESRAQAEQALSEKESQIETLVTSLLKmKDwaavlgeADDGNLDLDMKSGLENTAALDNQPKGALKKLIYA- 317
Cdd:pfam10174 480 LKEKVSALQPELTEKESSLIDLKEHASSLASSGLK-KD-------SKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVr 551
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 318 --AKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESES--QKLQQKLKVITELYQENEMK 393
Cdd:pfam10174 552 tnPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTlrQMKEQNKKVANIKHGQQEMK 631
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 394 LHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTihsyqgQVISHEKKAHdnwlaartlernLN 473
Cdd:pfam10174 632 KKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSST------QQSLAEKDGH------------LT 693
|
330 340 350
....*....|....*....|....*....|..
gi 568979259 474 DLRKEnahNRQKLTET-EFKFELL-----EKD 499
Cdd:pfam10174 694 NLRAE---RRKQLEEIlEMKQEALlaaisEKD 722
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
311-457 |
6.70e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 6.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 311 LKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITEL---- 386
Cdd:COG1579 6 LRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnv 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568979259 387 -----YQ--ENEM-KLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKK 457
Cdd:COG1579 86 rnnkeYEalQKEIeSLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
330-421 |
9.16e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 9.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 330 ERNQVYTQLSE-VDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHR--KLTVEEnyrl 406
Cdd:PRK12704 79 ERRNELQKLEKrLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERisGLTAEE---- 154
|
90
....*....|....*
gi 568979259 407 EKEEKLSKVDEKISH 421
Cdd:PRK12704 155 AKEILLEKVEEEARH 169
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
67-454 |
1.17e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 67 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKE--------ASFEKESTEAQSLEFVEGSQISEATYENLEQSK 138
Cdd:COG4717 119 EKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEElreleeelEELEAELAELQEELEELLEQLSLATEEELQDLA 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 139 SKLEDEILLLEEKLEEERAKHSEQDELMADISKRIQSLEDESksLKSQVAEAKTTFRIF-------------EINEERLK 205
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA--LEERLKEARLLLLIAaallallglggslLSLILTIA 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 206 GAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLL-KMKDWAAVLGEA 284
Cdd:COG4717 277 GVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLdRIEELQELLREA 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 285 DDGNLDLDMKSGLENTAALDNQPK-GALKKLIYAAKLNASLKALEGERNQVYTQLSE---------VDQVKEDLTEHIKS 354
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELEEQLEEllgeleellEALDEEELEEELEE 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 355 LESKQASLQSEKTEFESESQKLQQKLKvitelyqenemklhrkltveenyRLEKEEKLSKVDEKISHATEELETCRQR-- 432
Cdd:COG4717 437 LEEELEELEEELEELREELAELEAELE-----------------------QLEEDGELAELLQELEELKAELRELAEEwa 493
|
410 420
....*....|....*....|....*..
gi 568979259 433 -----AKDLEEELERTIHSYQGQVISH 454
Cdd:COG4717 494 alklaLELLEEAREEYREERLPPVLER 520
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
319-442 |
1.64e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 41.54 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 319 KLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKV-ITELYQENEMKLhRK 397
Cdd:smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEkLKKLLQEIMIKV-KK 226
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 568979259 398 LTveenyrlEKEEKLSKVDEKISHATEELETCRQRAKDLEEELER 442
Cdd:smart00787 227 LE-------ELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
76-436 |
1.71e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 76 SALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLLEEKLEEE 155
Cdd:pfam01576 92 QQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 156 RAK-------HSEQDELMADISKRIQ--------------SLEDESKSLKSQVAEAKTtfRIFEI------NEERLKGAI 208
Cdd:pfam01576 172 EEKakslsklKNKHEAMISDLEERLKkeekgrqelekakrKLEGESTDLQEQIAELQA--QIAELraqlakKEEELQAAL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 209 KDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVAleesRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEaddgn 288
Cdd:pfam01576 250 ARLEEETAQKNNALKKIRELEAQISELQEDLESERAA----RNKAEKQRRDLGEELEALKTELEDTLDTTAAQQE----- 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 289 ldldMKSGLEntaaldnQPKGALKkliyaaklnaslKALEGERNQVYTQLSEV----DQVKEDLTEHIKSLESKQASLQS 364
Cdd:pfam01576 321 ----LRSKRE-------QEVTELK------------KALEEETRSHEAQLQEMrqkhTQALEELTEQLEQAKRNKANLEK 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 365 EKTEFESESQKLQQKLKVITELYQENEMK----------LHRKLTVEENYRLEKEEKLSKVD---EKISHATEELET-CR 430
Cdd:pfam01576 378 AKQALESENAELQAELRTLQQAKQDSEHKrkklegqlqeLQARLSESERQRAELAEKLSKLQselESVSSLLNEAEGkNI 457
|
....*.
gi 568979259 431 QRAKDL 436
Cdd:pfam01576 458 KLSKDV 463
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
92-478 |
3.48e-03 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 41.04 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 92 VQKEYEGLESSLkeASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMADISK 171
Cdd:pfam15964 305 LTKERDDLMSAL--VSVRSSLAEAQQRESSAYEQVKQAVQMTEEANFEKTKALIQCEQLKSELERQKERLEKELASQQEK 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 172 RIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAI----KDALNENSQLQESQKQL-LQETEM------MKEQVNDLD 240
Cdd:pfam15964 383 RAQEKEALRKEMKKEREELGATMLALSQNVAQLEAQVekvtREKNSLVSQLEEAQKQLaSQEMDVtkvcgeMRYQLNQTK 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 241 KQKVALE----ESRAQAEQALSEKESQIETLVTSL----LKMKDWAAVLGEADDGNLDL-DMKSGLENTAALDNQPKGAL 311
Cdd:pfam15964 463 MKKDEAEkehrEYRTKTGRQLEIKDQEIEKLGLELseskQRLEQAQQDAARAREECLKLtELLGESEHQLHLTRLEKESI 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 312 KKLIYAAKLNASLKALEGERnqvytQLSEVDQVKEdlTEHIKSLESKQASLQSEKT---EFESESQKLQQKLKVITELYQ 388
Cdd:pfam15964 543 QQSFSNEAKAQALQAQQREQ-----ELTQKMQQME--AQHDKTVNEQYSLLTSQNTfiaKLKEECCTLAKKLEEITQKSR 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 389 eNEMKlhrKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTL 468
Cdd:pfam15964 616 -SEVE---QLSQEKEYLQDRLEKLQKRNEELEEQCVQHGRMHERMKQRLRQLDKHCQATAQQLVQLLSKQNQLFKERQNL 691
|
410
....*....|
gi 568979259 469 ERNLNDLRKE 478
Cdd:pfam15964 692 TEEVQSLRSQ 701
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
85-490 |
5.30e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.11 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 85 LLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLedeillleekleeerakhSEQDE 164
Cdd:pfam05557 109 LKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSL------------------AEAEQ 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 165 LMADISKRIQSLEDESKSLKSQVAEAKttfRIFEINEErlkgaIKDALNENSQLQESQkqllQETEMMKEQVNDLDKQKV 244
Cdd:pfam05557 171 RIKELEFEIQSQEQDSEIVKNSKSELA---RIPELEKE-----LERLREHNKHLNENI----ENKLLLKEEVEDLKRKLE 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 245 ALEESRAQAeQALSEKESQIETlvtsllKMKDWAAVlgeADDGNLDLdmksglentaaldNQPKGALKKLIYAAKLNASL 324
Cdd:pfam05557 239 REEKYREEA-ATLELEKEKLEQ------ELQSWVKL---AQDTGLNL-------------RSPEDLSRRIEQLQQREIVL 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 325 KAlegERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITElyqenEMKLHRKLTveENY 404
Cdd:pfam05557 296 KE---ENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTK-----ERDGYRAIL--ESY 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 405 rlEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEkkahdnwLAARTLERNLNDLRKENAHNRQ 484
Cdd:pfam05557 366 --DKELTMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYK-------QQAQTLERELQALRQQESLADP 436
|
....*.
gi 568979259 485 KLTETE 490
Cdd:pfam05557 437 SYSKEE 442
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
318-448 |
5.73e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.89 E-value: 5.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 318 AKLNASLKALEGERNQVYTQL----SEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMK 393
Cdd:COG4372 48 EQLREELEQAREELEQLEEELeqarSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDL 127
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 568979259 394 lhrkltveENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQ 448
Cdd:COG4372 128 --------EQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQ 174
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
122-488 |
5.75e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 5.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 122 EGSQISEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINE 201
Cdd:pfam01576 19 ERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQNEK 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 202 ERLKGAIKDaLNENSQLQESQKQLLQ---------------ETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIET 266
Cdd:pfam01576 99 KKMQQHIQD-LEEQLDEEEAARQKLQlekvtteakikkleeDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 267 LvtSLLKMKDWAavlgeaddgnldldMKSGLENTAALDNQPKGALKKLiyaaklnasLKALEGERNQVYTQLSEVDQVKE 346
Cdd:pfam01576 178 L--SKLKNKHEA--------------MISDLEERLKKEEKGRQELEKA---------KRKLEGESTDLQEQIAELQAQIA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 347 DLTehiKSLESKQASLQSEKTEFESESQKLQQKLKVITELyQENEMKLHRKLTVEENYRlEKEEKLSKvdekisHATEEL 426
Cdd:pfam01576 233 ELR---AQLAKKEEELQAALARLEEETAQKNNALKKIREL-EAQISELQEDLESERAAR-NKAEKQRR------DLGEEL 301
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568979259 427 ETCRqraKDLEEELERT-----IHSYQGQVISHEKKAHDNwlAARTLERNLNDLRKENAHNRQKLTE 488
Cdd:pfam01576 302 EALK---TELEDTLDTTaaqqeLRSKREQEVTELKKALEE--ETRSHEAQLQEMRQKHTQALEELTE 363
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
68-438 |
5.79e-03 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 40.31 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 68 EKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENL-----EQSKSKLE 142
Cdd:pfam15818 66 KKQLQMKMCALEEEKGKYQLATEIKEKEIEGLKETLKALQVSKYSLQKKVSEMEQKLQLHLLAKEDHhkqlnEIEKYYAT 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 143 DEILLLEEKLEEERAKHSEQDEL-----MADISKR----IQSLEDESKSLKSQVAEAKTTFRiFEINEERLKGAIKDaln 213
Cdd:pfam15818 146 ITGQFGLVKENHGKLEQNVQEAIqlnkrLSALNKKqeseICSLKKELKKVTSDLIKSKVTCQ-YKMGEENINLTIKE--- 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 214 enSQLQESQKQLLQETEMMK---EQVNDLDKQKVALEESrAQAEQALSEKESQIETLVTSLLKmkdwaaVLGEaddGNLD 290
Cdd:pfam15818 222 --QKFQELQERLNMELELNKkinEEITHIQEEKQDIIIS-FQHMQQLLQQQTQANTEMEAELK------ALKE---NNQT 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 291 LDMKSGLENTAALDNQPKgalkkliYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTE----HIKSLESKQASLQSEK 366
Cdd:pfam15818 290 LERDNELQREKVKENEEK-------FLNLQNEHEKALGTWKKHVEELNGEINEIKNELSSlketHIKLQEHYNKLCNQKK 362
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568979259 367 TEfesESQKLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKvdeKISHATEELETCRQRAKDLEE 438
Cdd:pfam15818 363 FE---EDKKFQNVPEVNNENSEMSTEKSENLIIQKYNSEQEIREENTK---SFCSDTEYRETEKKKGPPVEE 428
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
69-267 |
5.90e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 5.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 69 KKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQslefvegsqiSEATYENLEQSKskledeilll 148
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAE----------IDKLQAEIAEAE---------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 149 eekleeerakhSEQDELMADISKRIQSL--EDESKSLKSQVAEAK--TTF--RIFEINeeRLKGAIKDALNEnsqLQESQ 222
Cdd:COG3883 79 -----------AEIEERREELGERARALyrSGGSVSYLDVLLGSEsfSDFldRLSALS--KIADADADLLEE---LKADK 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568979259 223 KQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETL 267
Cdd:COG3883 143 AELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQL 187
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
317-481 |
5.99e-03 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 38.37 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 317 AAKLNASLKALEGERNQVYTQLSEVD-QVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITElyqenemKLH 395
Cdd:pfam08614 16 TALLEAENAKLQSEPESVLPSTSSSKlSKASPQSASIQSLEQLLAQLREELAELYRSRGELAQRLVDLNE-------ELQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 396 rkltveenyrlEKEEKLSKVDEKISHATEELETCRQRAKDLEEEL---ERTIHSYQGQVISHekkahdnWLAARTLERNL 472
Cdd:pfam08614 89 -----------ELEKKLREDERRLAALEAERAQLEEKLKDREEELrekRKLNQDLQDELVAL-------QLQLNMAEEKL 150
|
....*....
gi 568979259 473 NDLRKENAH 481
Cdd:pfam08614 151 RKLEKENRE 159
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
204-450 |
6.79e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 39.41 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 204 LKGAIKDALNENSQLQESQKQ---LLQETEMMKEQVNDLDKQKVALEesrAQAEQALSEKESQIETlVTSLLKmkdwaaV 280
Cdd:pfam15905 61 LKKKSQKNLKESKDQKELEKEiraLVQERGEQDKRLQALEEELEKVE---AKLNAAVREKTSLSAS-VASLEK------Q 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 281 LGEADDGNLDLDMKSGLENTAALDNQPKGALKKLiyAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQA 360
Cdd:pfam15905 131 LLELTRVNELLKAKFSEDGTQKKMSSLSMELMKL--RNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLV 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 361 SLQSEKTEFESESQKLqqkLKVITELYQENE--MKLHRKLTVEENYRLEKEEKL----SKVDEKISHATEELETCRQRAK 434
Cdd:pfam15905 209 STEKEKIEEKSETEKL---LEYITELSCVSEqvEKYKLDIAQLEELLKEKNDEIeslkQSLEEKEQELSKQIKDLNEKCK 285
|
250
....*....|....*.
gi 568979259 435 DLEEELERTIHSYQGQ 450
Cdd:pfam15905 286 LLESEKEELLREYEEK 301
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
160-402 |
7.35e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.61 E-value: 7.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 160 SEQDELMADiskRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNEN----SQLQESQKQLLQETEMMKEQ 235
Cdd:PHA02562 166 SEMDKLNKD---KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKqnkyDELVEEAKTIKAEIEELTDE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 236 VNDLDKQKVALEESRAQAEQALSEKESQIETLvTSLLKM--------------KDWAAVLGEADDGNLDLDMKSGLENTA 301
Cdd:PHA02562 243 LLNLVMDIEDPSAALNKLNTAAAKIKSKIEQF-QKVIKMyekggvcptctqqiSEGPDRITKIKDKLKELQHSLEKLDTA 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 302 ALDNQpkgalKKLIYAAKLNASLKALEGERNQVYTQLS-EVDQvkedltehIKSLESKQASLQSEKTEFESESQKLQQKL 380
Cdd:PHA02562 322 IDELE-----EIMDEFNEQSKKLLELKNKISTNKQSLItLVDK--------AKKVKAAIEELQAEFVDNAEELAKLQDEL 388
|
250 260
....*....|....*....|..
gi 568979259 381 KVITELYQENEMKLHRKLTVEE 402
Cdd:PHA02562 389 DKIVKTKSELVKEKYHRGIVTD 410
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
346-457 |
7.52e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 7.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 346 EDLTEHIksLESKQASLQSEKTEFESESQKLQQKLKviTELYQENEMKLhRKLTVEENYRLEKEEKLSKVDEKISHATEE 425
Cdd:PRK12704 37 EEEAKRI--LEEAKKEAEAIKKEALLEAKEEIHKLR--NEFEKELRERR-NELQKLEKRLLQKEENLDRKLELLEKREEE 111
|
90 100 110
....*....|....*....|....*....|..
gi 568979259 426 LETCRQRAKDLEEELERTIHSYQGQVISHEKK 457
Cdd:PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
159-489 |
8.30e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 39.81 E-value: 8.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 159 HSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALnENSQLQESQKQLLQETEMMKEQVND 238
Cdd:PTZ00440 438 NLEIIEIKKKYDEKINELKKSINQLKTLISIMKSFYDLIISEKDSMDSKEKKES-SDSNYQEKVDELLQIINSIKEKNNI 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 239 LDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAavlgeaDDGNLDLDMKSGLENtaaldnqpkgalkKLIYAa 318
Cdd:PTZ00440 517 VNNNFKNIEDYYITIEGLKNEIEGLIELIKYYLQSIETLI------KDEKLKRSMKNDIKN-------------KIKYI- 576
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 319 klnaslkalegerNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLK-VITELYQENEMKLHRK 397
Cdd:PTZ00440 577 -------------EENVDHIKDIISLNDEIDNIIQQIEELINEALFNKEKFINEKNDLQEKVKyILNKFYKGDLQELLDE 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 398 LT--VEENYRLEKEeklskvdekiSHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAAR--TLERNLN 473
Cdd:PTZ00440 644 LShfLDDHKYLYHE----------AKSKEDLQTLLNTSKNEYEKLEFMKSDNIDNIIKNLKKELQNLLSLKenIIKKQLN 713
|
330
....*....|....*.
gi 568979259 474 DLRKENAHNRQKLTET 489
Cdd:PTZ00440 714 NIEQDISNSLNQYTIK 729
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
339-442 |
9.04e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 39.53 E-value: 9.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568979259 339 SEVDQVKEDLTE----HIkslESKQASLQSEKT-EFESESQKLQQKLKVITELYQENEMKLHRKLTVEENyRLEK----- 408
Cdd:PRK05771 16 SYKDEVLEALHElgvvHI---EDLKEELSNERLrKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVK-SLEElikdv 91
|
90 100 110
....*....|....*....|....*....|....
gi 568979259 409 EEKLSKVDEKISHATEELETCRQRAKDLEEELER 442
Cdd:PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIER 125
|
|
| |
