|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
225-1064 |
5.83e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.43 E-value: 5.83e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 225 SQDLDDHQHELSALQ-NAHQQKLteisRRHREELSDYEERIEELENLLQQGGSGVTVTDhSKVYEMQNTIQILQMEKVES 303
Cdd:TIGR02168 219 KAELRELELALLVLRlEELREEL----EELQEELKEAEEELEELTAELQELEEKLEELR-LEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 304 TKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEEtilphsssv 383
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE--------- 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 384 AEVLRLQQALTDAENEIMRLRSlnqDISLAEDNQKLqmcvqtLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRdld 463
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRS---KVAQLELQIAS------LNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--- 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 464 lfSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSvIKKLKEELAGEKQRth 543
Cdd:TIGR02168 433 --AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEG-- 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 544 qleddkmniIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVE--------DLVDQLSKSEKNNFDIQKENHELREHIRqn 615
Cdd:TIGR02168 508 ---------VKALLKNQSGLSGILGVLSELISVDEGYEAAIEaalggrlqAVVVENLNAAKKAIAFLKQNELGRVTFL-- 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 616 eeELSTVR------SELTQSQTQGSSRNVKDDLLKERET---QVQNLKQNLSEVEQLNEHLEQV-----AFDLRTENEEL 681
Cdd:TIGR02168 577 --PLDSIKgteiqgNDREILKNIEGFLGVAKDLVKFDPKlrkALSYLLGGVLVVDDLDNALELAkklrpGYRIVTLDGDL 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 682 LEA----YEEVRNQleESVAGNKQISLE----KTAMLEWEKAPLETELCRAEKRV------LEEERKYEQTVQELSSACS 747
Cdd:TIGR02168 655 VRPggviTGGSAKT--NSSILERRREIEeleeKIEELEEKIAELEKALAELRKELeeleeeLEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 748 PDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKEL 827
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 828 DkcaQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEpRTLDSTTELESELSQLHRIKGHLEEE 907
Cdd:TIGR02168 813 T---LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE-ELEELIEELESELEALLNERASLEEA 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 908 IKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMsishtrlflekDEEIKNLQKTIEQIKAQLHEERQDSqtens 987
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQL-----------ELRLEGLEVRIDNLQERLSEEYSLT----- 952
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 988 diFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKEREL----EIKLLNEKNTSLTKQIDQLSKdEVGKLTQIIQQKDLE 1063
Cdd:TIGR02168 953 --LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLaaieEYEELKERYDFLTAQKEDLTE-AKETLEEAIEEIDRE 1029
|
.
gi 568978624 1064 I 1064
Cdd:TIGR02168 1030 A 1030
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
305-1047 |
7.28e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.42 E-value: 7.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 305 KQIEDLENKIKEIHKRLSSAEHDQEVWKKEQE-RLEVEKREMTEQCERLK-----LELSEAQQSALRQSDAAVEEETilp 378
Cdd:TIGR02169 184 ENIERLDLIIDEKRQQLERLRREREKAERYQAlLKEKREYEGYELLKEKEalerqKEAIERQLASLEEELEKLTEEI--- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 379 hSSSVAEVLRLQQALTDAENEIMRLRSlNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTA 458
Cdd:TIGR02169 261 -SELEKRLEEIEQLLEELNKKIKDLGE-EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 459 TrdlDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGE 538
Cdd:TIGR02169 339 E---ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 539 KQRTHQLEDDKMniikELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEE 618
Cdd:TIGR02169 416 QRLSEELADLNA----AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 619 LSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTEN---EELLEAYEEVRNQLEES 695
Cdd:TIGR02169 492 LAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNvvvEDDAVAKEAIELLKRRK 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 696 VAGNKQISLEKTAMLEWEKAPLETELCRAEK-RVLEEERKYEQTV----QELSSACSPDTSALQLEQERLIQLNQE---- 766
Cdd:TIGR02169 572 AGRATFLPLNKMRDERRDLSILSEDGVIGFAvDLVEFDPKYEPAFkyvfGDTLVVEDIEAARRLMGKYRMVTLEGElfek 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 767 -------------KDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQT 833
Cdd:TIGR02169 652 sgamtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 834 LRKN----ETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSrvvpapeprtldsttELESELSQLHRIKGHleEEIK 909
Cdd:TIGR02169 732 EEKLkerlEELEEDLSSLEQEIENVKSELKELEARIEELEEDLH---------------KLEEALNDLEARLSH--SRIP 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 910 HHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMsishtrlflekDEEIKNLQKTIEQIKAQLHEERQdsQTENSDI 989
Cdd:TIGR02169 795 EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL-----------EKEIQELQEQRIDLKEQIKSIEK--EIENLNG 861
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 568978624 990 FQETKVQSLSiEHGSEKHDLSKaETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSK 1047
Cdd:TIGR02169 862 KKEELEEELE-ELEAALRDLES-RLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
170-906 |
1.84e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.25 E-value: 1.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 170 SQQEINRLSNEVSRLESELghwrHIAQTKVQGAQSsdqtEICKLQNIIKELKQNRSQdLDDHQHELSALQNAHQQKLTEI 249
Cdd:TIGR02168 265 LEEKLEELRLEVSELEEEI----EELQKELYALAN----EISRLEQQKQILRERLAN-LERQLEELEAQLEELESKLDEL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 250 srrhREELSDYEERIEELENLLQQggsgvtvtDHSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQE 329
Cdd:TIGR02168 336 ----AEELAELEEKLEELKEELES--------LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 330 VWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEE----------TILPHSSSVAEVLRLQQALTDAENE 399
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEleelqeelerLEEALEELREELEEAEQALDAAERE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 400 IMRLRS-LNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELqISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEA- 477
Cdd:TIGR02168 484 LAQLQArLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVL-SELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAi 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 478 ---KEQELNQ-------SIHENEILMAELEELDKQNQEATKHVILIK--DQLSKQQS----------EGDSVIKKLKEEL 535
Cdd:TIGR02168 563 aflKQNELGRvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdPKLRKALSyllggvlvvdDLDNALELAKKLR 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 536 AGEKQRThqLEDDKMNIIKELTVQKEKLTHS----EQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREH 611
Cdd:TIGR02168 643 PGYRIVT--LDGDLVRPGGVITGGSAKTNSSilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 612 IRQNEEELSTVRSELTQsqtqgssrnvkddLLKERETQVQNLKQNLSEVEQLNEHLEQVAfDLRTENEELLEAYEEVRNQ 691
Cdd:TIGR02168 721 LEELSRQISALRKDLAR-------------LEAEVEQLEERIAQLSKELTELEAEIEELE-ERLEEAEEELAEAEAEIEE 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 692 LEESVAGNKQislektamlewEKAPLETELCRAEKRVLEEERKYEQTVQELSSaCSPDTSALQLEQERLIQLNQEKDFEI 771
Cdd:TIGR02168 787 LEAQIEQLKE-----------ELKALREALDELRAELTLLNEEAANLRERLES-LERRIAATERRLEDLEEQIEELSEDI 854
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 772 AELKKSIEQMDTDHKrtketlssslEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSL 851
Cdd:TIGR02168 855 ESLAAEIEELEELIE----------ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 568978624 852 GSMKEE----NNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEE 906
Cdd:TIGR02168 925 AQLELRleglEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
460-1067 |
2.68e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.74 E-value: 2.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 460 RDLDLFSQVHDLKHnLEAKEQELNQSIHENEilmAELEELDKQNQEATKHVILIKDQLSKQQSEgdsvIKKLKEELAGEK 539
Cdd:COG1196 223 KELEAELLLLKLRE-LEAELEELEAELEELE---AELEELEAELAELEAELEELRLELEELELE----LEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 540 QRTHQLEddkmniiKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEEL 619
Cdd:COG1196 295 AELARLE-------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 620 STVRSELTQSQTQgssrnvkddlLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGN 699
Cdd:COG1196 368 LEAEAELAEAEEE----------LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 700 KQISLEKTAMLEWEKApLETELCRAEKRVLEEERKYEQTVQELSSAcspDTSALQLEQERLIQLNQEKDFE----IAELK 775
Cdd:COG1196 438 EEEEEALEEAAEEEAE-LEEEEEALLELLAELLEEAALLEAALAEL---LEELAEAAARLLLLLEAEADYEgfleGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 776 KSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIV-----KLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRS 850
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVveddeVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALA 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 851 LGSMKEENNHLQEELERLREQQSR-----VVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQL 925
Cdd:COG1196 594 RGAIGAAVDLVASDLREADARYYVlgdtlLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 926 LQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSE 1005
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL 753
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568978624 1006 KHDLSKAETERLVKGIKERELEIKLL--------------NEKNTSLTKQIDQLSKdEVGKLTQIIQQKDLEIQAL 1067
Cdd:COG1196 754 EELPEPPDLEELERELERLEREIEALgpvnllaieeyeelEERYDFLSEQREDLEE-ARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
212-781 |
6.74e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 6.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 212 KLQNIIKELKQN-RSQDLDDHQHELSALQNAHQQKLTEIsRRHREELSDYEERIEELENLLQQGGSGVTvtdhskvyEMQ 290
Cdd:COG1196 217 ELKEELKELEAElLLLKLRELEAELEELEAELEELEAEL-EELEAELAELEAELEELRLELEELELELE--------EAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 291 NTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAA 370
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 371 VEEETILphSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKlqmcvQTLEKEKSLLSQEKEELQISLSKLSSE 450
Cdd:COG1196 368 LEAEAEL--AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL-----ERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 451 YEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQ---------NQEATKHVILIKDQLSKQQ 521
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARllllleaeaDYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 522 SEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKL-----THSEQALSDLQLTKQKLEDKVEDLVDQLSKSEK 596
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAieylkAAKAGRATFLPLDKIRARAALAAALARGAIGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 597 NNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRnvkddLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRT 676
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV-----TLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 677 ENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLE 756
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
570 580
....*....|....*....|....*
gi 568978624 757 QERLIQLNQEKDfEIAELKKSIEQM 781
Cdd:COG1196 756 LPEPPDLEELER-ELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
813-1748 |
7.04e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 7.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 813 IVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVvpapeprTLDSTTELES 892
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELAL-------LVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 893 ELSQLHRIKGHLEEEIKHHQKMIEdqnqsklqllqslqEQKKELDEFKYQHEQMSishtRLFLEKDEEIKNLQKTIEQIK 972
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQ--------------ELEEKLEELRLEVSELE----EEIEELQKELYALANEISRLE 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 973 AQLheERQDSQTENSDifQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGK 1052
Cdd:TIGR02168 302 QQK--QILRERLANLE--RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1053 LTQIIQQKDLEIQALHARissASYSQDVVYLQQQLHAYAMEREKVMVILNEktRENSQLKTEYHKVIDIISAKEAALIKL 1132
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQI---ASLNNEIERLEARLERLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEEL 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1133 QDENKKMSTRFESSgqdmfKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQTSGTGSEAGGVNSNQFEELLQERDKLKQ 1212
Cdd:TIGR02168 453 QEELERLEEALEEL-----REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1213 QVKKMEEWKQQVMTTVQ-NMQH---ESAQLQEELHQLQAQVS--------VDSDNNSKLQVDYTGLIQSYEQNETKLKNF 1280
Cdd:TIGR02168 528 LISVDEGYEAAIEAALGgRLQAvvvENLNAAKKAIAFLKQNElgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDL 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1281 GQELAQVQHSIGqlcntkdLLLGKLDI---------MSPQLSSGSSLTSQAAEPLRAS-----QSSEPHESSQLLQQEVD 1346
Cdd:TIGR02168 608 VKFDPKLRKALS-------YLLGGVLVvddldnaleLAKKLRPGYRIVTLDGDLVRPGgvitgGSAKTNSSILERRREIE 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1347 DLRKSLQEKDATIRTLQEnnhrlsdsvaasseverkeheqadsEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENL 1426
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEK-------------------------ALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1427 ANKVNENELLRQAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQEtnmkfsmmlrekefechsmrekalaf 1506
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA-------------------------- 789
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1507 eqllkekeqgkagELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLE 1586
Cdd:TIGR02168 790 -------------QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1587 SEDSHTREALAAEDREAKLrkkvsvleEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYA 1666
Cdd:TIGR02168 857 LAAEIEELEELIEELESEL--------EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1667 LSLANLQMVLEHFQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEAN----AALDSASRLTEQLDLKEEQ 1742
Cdd:TIGR02168 929 LRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGpvnlAAIEEYEELKERYDFLTAQ 1008
|
....*.
gi 568978624 1743 IEELKK 1748
Cdd:TIGR02168 1009 KEDLTE 1014
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
313-872 |
9.06e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 9.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 313 KIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQ--SALRQSDAAVEEETILPHSSSVAEVLRLQ 390
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELelEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 391 QALTDAENEIMRLRSLNQDISLAEDNQklqmcvQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHD 470
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEEL------EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 471 LKHNLEAKEQELNQSIHENEILMAELEELDKQNQEAtkhviliKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKM 550
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEE-------LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 551 NIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREH--------IRQNEEELSTV 622
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglagavavLIGVEAAYEAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 623 RSELTQSQTQGSSRNVKDDLLKERETQVQNLK--------QNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEE 694
Cdd:COG1196 540 LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 695 SVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAEL 774
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 775 KKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSM 854
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
570 580
....*....|....*....|....*
gi 568978624 855 -------KEENNHLQEELERLREQQ 872
Cdd:COG1196 780 gpvnllaIEEYEELEERYDFLSEQR 804
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
336-1114 |
9.70e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 9.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 336 ERLEVEKREMTEQCERLKLELSEAQQSAlrqsdAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQdiSLAED 415
Cdd:TIGR02168 189 DRLEDILNELERQLKSLERQAEKAERYK-----ELKAELRELELALLVLRLEELREELEELQEELKEAEEELE--ELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 416 NQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEyeviKSTATRDLDLFSQ-VHDLKHNLEAKEQELNQSIHENEILMA 494
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANE----ISRLEQQKQILRErLANLERQLEELEAQLEELESKLDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 495 ELEELDKQNQEATKHVILIKDQLSK---QQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALS 571
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEEleaELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 572 DLQ-----LTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKER 646
Cdd:TIGR02168 418 RLQqeieeLLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 647 ETQVQNLKQNLSEV----EQLNEHLEQVAFDLRTENE----------ELLEAYE-EVRNQLEESVAGNKQISLEKTAMLE 711
Cdd:TIGR02168 498 QENLEGFSEGVKALlknqSGLSGILGVLSELISVDEGyeaaieaalgGRLQAVVvENLNAAKKAIAFLKQNELGRVTFLP 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 712 -------------WEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSaLQLEQERLIQLNQE-----KDFEIAE 773
Cdd:TIGR02168 578 ldsikgteiqgndREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD-LDNALELAKKLRPGyrivtLDGDLVR 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 774 LKKSIeqmdtdHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGS 853
Cdd:TIGR02168 657 PGGVI------TGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 854 MKEENNHLQEELERLREQQSrvvpapepRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQK 933
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIA--------QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 934 KELDEFKYQHEQMSIShtrlFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIfqetKVQSLSIEHGSEKHDLSKAE 1013
Cdd:TIGR02168 803 EALDELRAELTLLNEE----AANLRERLESLERRIAATERRLEDLEEQIEELSEDI----ESLAAEIEELEELIEELESE 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1014 TERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKdEVGKLTQIIQQKDLEIQALHARISSAsySQDVVYLQQQLHA-YAM 1092
Cdd:TIGR02168 875 LEALLNERASLEEALALLRSELEELSEELRELES-KRSELRRELEELREKLAQLELRLEGL--EVRIDNLQERLSEeYSL 951
|
810 820
....*....|....*....|..
gi 568978624 1093 EREKVMVILNEKTRENSQLKTE 1114
Cdd:TIGR02168 952 TLEEAEALENKIEDDEEEARRR 973
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
67-849 |
5.08e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 5.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 67 NERLKKLYTDLEEKhEASELQIKQQSSSYRSQLQQKEEEINHLKARQLALQDELLRLQSAAQSAHLGSGSAPAASASSSf 146
Cdd:TIGR02168 308 RERLANLERQLEEL-EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR- 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 147 sygvshrvsafheddmdfGDVISSQQEINRLSNEVSRLESELghwrHIAQTKVQGAQSSDQTEICKLQNIIKELKQNRSQ 226
Cdd:TIGR02168 386 ------------------SKVAQLELQIASLNNEIERLEARL----ERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 227 DLDDHQHELSALQNAHQQKLTEIsrrhREELSDYEERIEELENLLQQGGSGVTVTdhskvyemqNTIQILQMEKVESTKQ 306
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEEL----REELEEAEQALDAAERELAQLQARLDSL---------ERLQENLEGFSEGVKA 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 307 IEDLENKIKEIHKRLSSAEHDQEVWKKEQErlevekremTEQCERLKLELSEAQQSALRQSDAAVEEE----TILPHSSS 382
Cdd:TIGR02168 511 LLKNQSGLSGILGVLSELISVDEGYEAAIE---------AALGGRLQAVVVENLNAAKKAIAFLKQNElgrvTFLPLDSI 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 383 VAEVLRLQQALTdAENEIMRLRSLNQDISLAEDNQKL-------QMCVQTLEKEKSLLSQEKEELQI-SLS--KLSSEYE 452
Cdd:TIGR02168 582 KGTEIQGNDREI-LKNIEGFLGVAKDLVKFDPKLRKAlsyllggVLVVDDLDNALELAKKLRPGYRIvTLDgdLVRPGGV 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 453 VIKSTATRDLDLFSQVHDLKhNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLK 532
Cdd:TIGR02168 661 ITGGSAKTNSSILERRREIE-ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 533 EELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHI 612
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 613 RQNEEELStvrseltqsqtqgSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQL 692
Cdd:TIGR02168 820 ANLRERLE-------------SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 693 EESVAGNKQISLEKTAMLEWEKA--PLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFE 770
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKrsELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDD 966
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568978624 771 IAELKKSIEQMDTDHKRTKETLSSSLEEQKQltqlinekeicivkLKEKSSELQKELDKCAQTLrknETLRQTIEEKDR 849
Cdd:TIGR02168 967 EEEARRRLKRLENKIKELGPVNLAAIEEYEE--------------LKERYDFLTAQKEDLTEAK---ETLEEAIEEIDR 1028
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
212-875 |
4.84e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 68.22 E-value: 4.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 212 KLQNIIKEL------KQNRSQDLDDHQHELSALQNAHQQKLTEIsrrhREELSDYEErieelenllqqgGSGVTVTDHSK 285
Cdd:pfam15921 146 QLQNTVHELeaakclKEDMLEDSNTQIEQLRKMMLSHEGVLQEI----RSILVDFEE------------ASGKKIYEHDS 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 286 VyemqNTIQILQMEKVEStKQIEDLENKIKEIHKRLSSAEHDQEVWKKE-QERLEVEKREMTEQCERLKLE-------LS 357
Cdd:pfam15921 210 M----STMHFRSLGSAIS-KILRELDTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRIEQLISEheveitgLT 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 358 EAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQaLTDAENEIMRLRSlnqdiSLAEDNQKLQMCVQTLEKEKSLLSQEK 437
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQEQARNQNSMYMRQ-LSDLESTVSQLRS-----ELREAKRMYEDKIEELEKQLVLANSEL 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 438 EELQISLSKLSSEyevikstaTRDLDlfSQVHDLKHNLEAKEQELNQSIHENEILMAE-----------LEELDKQNQEA 506
Cdd:pfam15921 359 TEARTERDQFSQE--------SGNLD--DQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitidhlRRELDDRNMEV 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 507 TKHVILIKDQLSKQQSEGD---SVIKKLKEELAGEKQRTHQLEDDK---MNIIKELTVQKEKLTHSEQALSDLQLTKQKL 580
Cdd:pfam15921 429 QRLEALLKAMKSECQGQMErqmAAIQGKNESLEKVSSLTAQLESTKemlRKVVEELTAKKMTLESSERTVSDLTASLQEK 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 581 EDKVEDLVDQLSKSeKNNFDIQKENhelREHIRQNEEELSTVRSELTQSQTQGSSrnvKDDLLKERETQVQNLKQNLSE- 659
Cdd:pfam15921 509 ERAIEATNAEITKL-RSRVDLKLQE---LQHLKNEGDHLRNVQTECEALKLQMAE---KDKVIEILRQQIENMTQLVGQh 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 660 ------VEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEwekapLETELCRAEKRVLEEER 733
Cdd:pfam15921 582 grtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVN-----AGSERLRAVKDIKQERD 656
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 734 KYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSS-------SLEEQKQLTQLI 806
Cdd:pfam15921 657 QLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmegsdghAMKVAMGMQKQI 736
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568978624 807 NEKEICIVKLKEKSSELQKELDKCAqtlRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRV 875
Cdd:pfam15921 737 TAKRGQIDALQSKIQFLEEAMTNAN---KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRL 802
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
300-913 |
7.07e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 67.35 E-value: 7.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 300 KVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSAlrqsdaaveEETILPH 379
Cdd:TIGR04523 70 INNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQK---------KENKKNI 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 380 SSSVAEVLRLQQALTDAENEIMRLRslNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTAT 459
Cdd:TIGR04523 141 DKFLTEIKKKEKELEKLNNKYNDLK--KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLES 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 460 RDLDLFSQVHDLKHNLEAKEQELNQsiheneiLMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEK 539
Cdd:TIGR04523 219 QISELKKQNNQLKDNIEKKQQEINE-------KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 540 QRTHQLEDDK----MNIIKELtvqKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQN 615
Cdd:TIGR04523 292 QLKSEISDLNnqkeQDWNKEL---KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEK 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 616 EEELSTVRSEltqsqtqgssRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEES 695
Cdd:TIGR04523 369 QNEIEKLKKE----------NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 696 vagNKQISlektaMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSacspdtsaLQLEQERLIQLNQEKDFEIAELK 775
Cdd:TIGR04523 439 ---NSEIK-----DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINK--------IKQNLEQKQKELKSKEKELKKLN 502
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 776 KSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKcaqtlrknETLRQTIEEKDRSLGSMK 855
Cdd:TIGR04523 503 EEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK--------ENLEKEIDEKNKEIEELK 574
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568978624 856 EENNHL---QEELERLREQQSrvvpapeprtlDSTTELESELSQLHRIKGHLEEEIKHHQK 913
Cdd:TIGR04523 575 QTQKSLkkkQEEKQELIDQKE-----------KEKKDLIKEIEEKEKKISSLEKELEKAKK 624
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
642-1311 |
7.78e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.45 E-value: 7.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 642 LLKERETQVQNLKQNLSEVEQLNE----HLEQVAFDLRTENEELL--------------EAYEEVRNQLEESVAGNKQIS 703
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESNELHEkqkfYLRQSVIDLQTKLQEMQmerdamadirrresQSQEDLRNQLQNTVHELEAAK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 704 LEKTAMLEWEKAPLET--ELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQER-----LIQLNQEKDFEIAELKK 776
Cdd:pfam15921 159 CLKEDMLEDSNTQIEQlrKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRslgsaISKILRELDTEISYLKG 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 777 SI----EQMDTDHKRTKETLSSSLEE-QKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLR-KNETLRQTIEEKDRS 850
Cdd:pfam15921 239 RIfpveDQLEALKSESQNKIELLLQQhQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiIQEQARNQNSMYMRQ 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 851 LGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTEL---ESELSQLHRIKGHLEEEIkhhQKMIEDQNQSKLQLLQ 927
Cdd:pfam15921 319 LSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELteaRTERDQFSQESGNLDDQL---QKLLADLHKREKELSL 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 928 SLQEQKKELDefKYQHEQMSISHTRLFL-EKDEEIKNLQKTIEQIKA--QLHEERQDSQTENSDIFQEtKVQSLSIEHGS 1004
Cdd:pfam15921 396 EKEQNKRLWD--RDTGNSITIDHLRRELdDRNMEVQRLEALLKAMKSecQGQMERQMAAIQGKNESLE-KVSSLTAQLES 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1005 EKHDLSKAETERLVKGIKERELEiKLLNEKNTSLTKQiDQLSKDEVGKLTQIIQQKDLEIQALHARISSASYSQDVVYLQ 1084
Cdd:pfam15921 473 TKEMLRKVVEELTAKKMTLESSE-RTVSDLTASLQEK-ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEC 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1085 QQLHAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALIK--------------LQDENKKMSTRFESSGQDM 1150
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKeindrrlelqefkiLKDKKDAKIRELEARVSDL 630
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1151 FKETIQNLS------RIIREKDIEIDALSQKCQTLLTVLQTSGTGSEAGGVN-SNQFEELLQERDKLKQQVKKMEEWKQQ 1223
Cdd:pfam15921 631 ELEKVKLVNagserlRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNfRNKSEEMETTTNKLKMQLKSAQSELEQ 710
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1224 VMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTgLIQSYEQNETKLKNF-GQELAQVQHSIGQLCNTKDLLL 1302
Cdd:pfam15921 711 TRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQ-FLEEAMTNANKEKHFlKEEKNKLSQELSTVATEKNKMA 789
|
....*....
gi 568978624 1303 GKLDIMSPQ 1311
Cdd:pfam15921 790 GELEVLRSQ 798
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
294-875 |
1.06e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.01 E-value: 1.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 294 QILQMEKVEST-----KQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKlelseaqqsALRQSD 368
Cdd:PRK03918 153 QILGLDDYENAyknlgEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP---------ELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 369 AAVEEetilphsssvaEVLRLQQALTDAENEIMRLRSLNQDI-SLAEDNQKLQMCVQTLEKEKSLLSQEKEELQiSLSKL 447
Cdd:PRK03918 224 EKLEK-----------EVKELEELKEEIEELEKELESLEGSKrKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEK 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 448 SSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSegdsv 527
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE----- 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 528 IKKLKEELAGEKQRTHQLEDDKmnIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHE 607
Cdd:PRK03918 367 AKAKKEELERLKKRLTGLTPEK--LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 608 LREHIRQN-----EEELSTVRSELTQSQTQGS---SRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFdlrtenE 679
Cdd:PRK03918 445 LTEEHRKElleeyTAELKRIEKELKEIEEKERklrKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNL------E 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 680 ELLEAYEEVRNQLEESVAGNKQIS-----LEKTAMLEWEKAPLETELCRAEKRVLEEERKY-----------EQTVQELS 743
Cdd:PRK03918 519 ELEKKAEEYEKLKEKLIKLKGEIKslkkeLEKLEELKKKLAELEKKLDELEEELAELLKELeelgfesveelEERLKELE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 744 SACSPDTSALQLEQERLIQLNQEKDFEiAELKKSIEQMDTDHKRTKEtLSSSLEEqkqLTQLINEKEicIVKLKEKSSEL 823
Cdd:PRK03918 599 PFYNEYLELKDAEKELEREEKELKKLE-EELDKAFEELAETEKRLEE-LRKELEE---LEKKYSEEE--YEELREEYLEL 671
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 568978624 824 QKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRV 875
Cdd:PRK03918 672 SRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV 723
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
239-1052 |
7.08e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 7.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 239 QNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTVTDHSKVYEMQNTIQILQMEKVESTKQIEdlENKIKEIH 318
Cdd:PTZ00121 1146 RKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAE--EARKAEDA 1223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 319 KRLSSAEHDQEVWKKEQERLEVEKREMTEqcERLKLELSEAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQALTDAEn 398
Cdd:PTZ00121 1224 KKAEAVKKAEEAKKDAEEAKKAEEERNNE--EIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEE- 1300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 399 eimrLRSLNQDISLAEDNQKlqmcVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAK 478
Cdd:PTZ00121 1301 ----KKKADEAKKKAEEAKK----ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 479 EQELNQSIHENEILMAEL---EELDKQNQEATKHVILIKDQlSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKE 555
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKkkaDEAKKKAEEDKKKADELKKA-AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 556 LTVQKEKLTH----SEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKEnhelREHIRQNEEELSTVRSELTQSQT 631
Cdd:PTZ00121 1452 KAEEAKKAEEakkkAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK----AAEAKKKADEAKKAEEAKKADEA 1527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 632 QGSSRNVKDDLLKERETQVQnlKQNLSEVEQLNEHLEQVAFDLRTENEEllEAYEEVRNQLEESVAGNKQISLEKTAMLE 711
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKK--ADELKKAEELKKAEEKKKAEEAKKAEE--DKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 712 WEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQmdtDHKRTKET 791
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE---DKKKAEEA 1680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 792 LSSSLEEQKQLTQLINEKEicivkLKEKSSELQKeldKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQ 871
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAE-----EAKKAEELKK---KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 872 QSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHT 951
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAI 1832
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 952 RLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKHdlskaETERLVKGIKERELEIKLL 1031
Cdd:PTZ00121 1833 KEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEAD-----EIEKIDKDDIEREIPNNNM 1907
|
810 820
....*....|....*....|.
gi 568978624 1032 NEKNTSLTKqiDQLSKDEVGK 1052
Cdd:PTZ00121 1908 AGKNNDIID--DKLDKDEYIK 1926
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
54-791 |
7.34e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 7.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 54 EENEATHSVLRSENERLKKLYTDLEEKHEASELQIKQQSSSYRS---QLQQKEEEINHLKARQLALQDELLRLQSAAQSA 130
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANlerQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 131 HLGSGSAPAASASSSFSYGVSHRVSAFHEDDMDF--GDVISSQQEINRLSNEVSRLESELghwrHIAQTKVQGAQSSDQT 208
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETlrSKVAQLELQIASLNNEIERLEARL----ERLEDRRERLQQEIEE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 209 EICKLQNIIKELKQNRSQDLDDHQHELSALQNAHQQKLTEIsrrhREELSDYEERIEELENLLQQGGSGVTVTdhskvye 288
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL----REELEEAEQALDAAERELAQLQARLDSL------- 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 289 mqNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKK------------------EQERLEVEKREMTEQCE 350
Cdd:TIGR02168 495 --ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAaieaalggrlqavvvenlNAAKKAIAFLKQNELGR 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 351 RLKLELSEAQQSALRQSDAAVEEE--------------------TILPHSSSVAEVLRLQQALTDA--ENEIMRLRSLNQ 408
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILKNiegflgvakdlvkfdpklrkALSYLLGGVLVVDDLDNALELAkkLRPGYRIVTLDG 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 409 DI----------------SLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLK 472
Cdd:TIGR02168 653 DLvrpggvitggsaktnsSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 473 HNLEAKEQELNQSIHENEILMAELEELDKQNQEAtkhvilikdqlskqqsegDSVIKKLKEELAGEKQRTHQLEDDKMNI 552
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEEL------------------EERLEEAEEELAEAEAEIEELEAQIEQL 794
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 553 IKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQ 632
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 633 gssRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLE----------ESVAGNKQI 702
Cdd:TIGR02168 875 ---LEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEglevridnlqERLSEEYSL 951
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 703 SLEkTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSAcspdtsALQLEQERLIQLNQEKD---FEIAELKKSIE 779
Cdd:TIGR02168 952 TLE-EAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIE------EYEELKERYDFLTAQKEdltEAKETLEEAIE 1024
|
810
....*....|...
gi 568978624 780 QMDTD-HKRTKET 791
Cdd:TIGR02168 1025 EIDREaRERFKDT 1037
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
53-870 |
8.60e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 8.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 53 REENEATHSVLRSENERLKKLYTDLEEKHEASELQIKQQSSSY----------RSQLQQKEEEINHLKARQLALQDEL-- 120
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGyellkekealERQKEAIERQLASLEEELEKLTEEIse 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 121 LRLQSAAQSAHLGSGSAPAASASSSFSYGVSHRVSAFHEDDMDFGDVIS-SQQEINRLSNEVSRLESELGHWRHIAqTKV 199
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAeKERELEDAEERLAKLEAEIDKLLAEI-EEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 200 QGAQSSDQTEICKLQNIIKELKQnrsqdlddhqhELSALQNAHQQKLTEiSRRHREELSDYEERIEELENllqqggsgvt 279
Cdd:TIGR02169 342 EREIEEERKRRDKLTEEYAELKE-----------ELEDLRAELEEVDKE-FAETRDELKDYREKLEKLKR---------- 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 280 vtdhsKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHD-----QEVWKKEQER---------LEVEKREM 345
Cdd:TIGR02169 400 -----EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEkedkaLEIKKQEWKLeqlaadlskYEQELYDL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 346 TEQCERLKLELSEAQQ---SALRQSDAAVEEEtilPHSSSVAEVLRlqQALTDAENEIMRLRSLNQDISLA--------- 413
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRelaEAEAQARASEERV---RGGRAVEEVLK--ASIQGVHGTVAQLGSVGERYATAievaagnrl 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 414 -----EDNQKLQMCVQTLEKEK----------------SLLSQEKEE----LQISLSKLSSEYE-----VIKST------ 457
Cdd:TIGR02169 550 nnvvvEDDAVAKEAIELLKRRKagratflplnkmrderRDLSILSEDgvigFAVDLVEFDPKYEpafkyVFGDTlvvedi 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 458 ------------ATRDLDLF-------------SQVHDLKHNLEAKEQELNQSIHENEILMAEL-EELDKQNQEATKHVI 511
Cdd:TIGR02169 630 eaarrlmgkyrmVTLEGELFeksgamtggsrapRGGILFSRSEPAELQRLRERLEGLKRELSSLqSELRRIENRLDELSQ 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 512 LIKDqLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLvdql 591
Cdd:TIGR02169 710 ELSD-ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL---- 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 592 skseknnfdiqkENHELREHIRQNEEELSTVRSEltqsqtqgssrnvkddlLKERETQVQNLKQNLSEVEQLNEHLEQVA 671
Cdd:TIGR02169 785 ------------EARLSHSRIPEIQAELSKLEEE-----------------VSRIEARLREIEQKLNRLTLEKEYLEKEI 835
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 672 FDLRTENEELLEAYEEVRNQLEEsvagnkqislektamLEWEKAPLETELCRAEKRVLEEERKYEQtvqelssacspdts 751
Cdd:TIGR02169 836 QELQEQRIDLKEQIKSIEKEIEN---------------LNGKKEELEEELEELEAALRDLESRLGD-------------- 886
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 752 aLQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEkEICIVKLKEKSSELQKELDKCA 831
Cdd:TIGR02169 887 -LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE-DEEIPEEELSLEDVQAELQRVE 964
|
890 900 910 920
....*....|....*....|....*....|....*....|...
gi 568978624 832 QTLRKNETLR----QTIEEKDRSLGSMKEENNHLQEELERLRE 870
Cdd:TIGR02169 965 EEIRALEPVNmlaiQEYEEVLKRLDELKEKRAKLEEERKAILE 1007
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
424-975 |
8.90e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 8.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 424 QTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILM----AELEEL 499
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRreleERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 500 DKQNQEATKHVILIKDQLSKQQSEGDS---VIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLT 576
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEaeeELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 577 KQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQN 656
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 657 LSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNqleesVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYE 736
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-----LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDD 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 737 QTVQELSSAcspdTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHkrtkETLSSSLEEQKQLTQLINEKEICIVKL 816
Cdd:COG1196 557 EVAAAAIEY----LKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV----DLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 817 KEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVpapeprtldstTELESELSQ 896
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL-----------AEEELELEE 697
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568978624 897 LHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQL 975
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
208-775 |
1.11e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.98 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 208 TEICKLQNIIKELKQNRSQDLDDHQHELSALQNAHQQKLTEISRRHREELSDYEER----------IEELENLLQQGGSG 277
Cdd:pfam15921 231 TEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKassarsqansIQSQLEIIQEQARN 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 278 VTVTDHSKVYEMQNTIQILQMEKVESTKQIEDlenKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERL----- 352
Cdd:pfam15921 311 QNSMYMRQLSDLESTVSQLRSELREAKRMYED---KIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLladlh 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 353 --KLELSEAQQSALRQSDAAVEEETILPHsssvaevlrLQQALTDAENEIMRLRSLNQDI-SLAEDNQKLQMCV-----Q 424
Cdd:pfam15921 388 krEKELSLEKEQNKRLWDRDTGNSITIDH---------LRRELDDRNMEVQRLEALLKAMkSECQGQMERQMAAiqgknE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 425 TLEKEKSLLSQ---EKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELdK 501
Cdd:pfam15921 459 SLEKVSSLTAQlesTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL-K 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 502 QNQEATKHVILIKDQLSKQQSEGDSVIKKLKE------ELAGEKQRT--------HQLE---DDKMNIIKELTVQKE--- 561
Cdd:pfam15921 538 NEGDHLRNVQTECEALKLQMAEKDKVIEILRQqienmtQLVGQHGRTagamqvekAQLEkeiNDRRLELQEFKILKDkkd 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 562 -KLTHSEQALSDLQLTKQKledkvedLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSEL--------TQSQTQ 632
Cdd:pfam15921 618 aKIRELEARVSDLELEKVK-------LVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYevlkrnfrNKSEEM 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 633 GSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLR---TENEELLEAYEEVRNQLEESVA-GNKQISLEK-- 706
Cdd:pfam15921 691 ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQkqiTAKRGQIDALQSKIQFLEEAMTnANKEKHFLKee 770
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568978624 707 ---------TAMLEWEKAPLETELCRAEKRVLEEE-RKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELK 775
Cdd:pfam15921 771 knklsqelsTVATEKNKMAGELEVLRSQERRLKEKvANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
365-875 |
2.68e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 62.36 E-value: 2.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 365 RQSDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDIS-----LAEDNQKLQMCVQTLEKEKSLLSqEKEE 439
Cdd:PRK02224 170 RASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAeldeeIERYEEQREQARETRDEADEVLE-EHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 440 LQISLSKLSSEYEVIKSTATRDL----DLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKD 515
Cdd:PRK02224 249 RREELETLEAEIEDLRETIAETErereELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 516 QLSKQ---QSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLS 592
Cdd:PRK02224 329 RLEECrvaAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 593 KSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSS-------RNVKD----DLLKERETQVQNLKQNLS--- 658
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgQPVEGsphvETIEEDRERVEELEAELEdle 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 659 -EVEQLNEHLEQvAFDLRtENEELLEAYEEVRNQLEESVAGNKQISLEKT---AMLEWEKAPLETELCRAEKRVLEEERK 734
Cdd:PRK02224 489 eEVEEVEERLER-AEDLV-EAEDRIERLEERREDLEELIAERRETIEEKReraEELRERAAELEAEAEEKREAAAEAEEE 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 735 YEQTVQELsSACSPDTSALQLEQERL------IQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINE 808
Cdd:PRK02224 567 AEEAREEV-AELNSKLAELKERIESLerirtlLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDE 645
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568978624 809 KEIcivklkeksSELQKELDKCAQTLRK-NETLRQTIEEKDRSLGSMKEENNHLqEELERLREQQSRV 875
Cdd:PRK02224 646 ARI---------EEAREDKERAEEYLEQvEEKLDELREERDDLQAEIGAVENEL-EELEELRERREAL 703
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
751-1459 |
2.91e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 2.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 751 SALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKC 830
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 831 AQTLRKNEtlrQTIEEKDRSLGSMKEENNHLQEELERLREQQSR---VVPAPEPRTLDSTTELE---SELSQLHRIKGHL 904
Cdd:TIGR02168 322 EAQLEELE---SKLDELAEELAELEEKLEELKEELESLEAELEEleaELEELESRLEELEEQLEtlrSKVAQLELQIASL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 905 EEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSIShtrlflEKDEEIKNLQKTIEQIKAQLHEERQDSQT 984
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE------ELEEELEELQEELERLEEALEELREELEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 985 ENSDIFQ-ETKVQSLSIEHGSEKHDLSKAETE-------------------RLVKGIK-----ERELEI-------KLLN 1032
Cdd:TIGR02168 473 AEQALDAaERELAQLQARLDSLERLQENLEGFsegvkallknqsglsgilgVLSELISvdegyEAAIEAalggrlqAVVV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1033 EKNTSLTKQIDQLSKDEVGKLTQII--QQKDLEIQALHAriSSASYSQDVVYLQQQLHAYAMEREKVM-------VILNE 1103
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGRVTFLPldSIKGTEIQGNDR--EILKNIEGFLGVAKDLVKFDPKLRKALsyllggvLVVDD 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1104 KTRENSQLKTEYHkvidiisakEAALIKLQDEnkkmstRFESSGQDMFKETIQNLSRIirEKDIEIDALSQKCQTLltvl 1183
Cdd:TIGR02168 631 LDNALELAKKLRP---------GYRIVTLDGD------LVRPGGVITGGSAKTNSSIL--ERRREIEELEEKIEEL---- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1184 qtsgTGSEAGGvnSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDY 1263
Cdd:TIGR02168 690 ----EEKIAEL--EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1264 TGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLrasqssephessQLLQQ 1343
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL------------ESLER 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1344 EVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEKDLLikakSDQLHSSN 1423
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL----SEELRELE 907
|
730 740 750
....*....|....*....|....*....|....*.
gi 568978624 1424 ENLANKVNENELLRQAVTNLKERILILEMDISKLKG 1459
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
264-1040 |
3.01e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 3.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 264 IEELENLLQQGGSGVTVTDHSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKR 343
Cdd:PTZ00121 1026 IEKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKK 1105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 344 EMTEQCErlklELSEAQQSALRQSDAAVEEETILPHSSSVAEVLRlqQALTDAENEIMRLrslnqdislAEDNQKLQMCV 423
Cdd:PTZ00121 1106 TETGKAE----EARKAEEAKKKAEDARKAEEARKAEDARKAEEAR--KAEDAKRVEIARK---------AEDARKAEEAR 1170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 424 QTLEKEKSLLSQEKEELQISLSKLSSEyEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHE--NEILMAELEELDK 501
Cdd:PTZ00121 1171 KAEDAKKAEAARKAEEVRKAEELRKAE-DARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEakKDAEEAKKAEEER 1249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 502 QNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQAlSDLQLTKQKLE 581
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA-DEAKKKAEEAK 1328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 582 DKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVE 661
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 662 QLN--EHLEQVAFDLRTENEELLEAyEEVRNQLEESVAGN--KQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQ 737
Cdd:PTZ00121 1409 ELKkaAAAKKKADEAKKKAEEKKKA-DEAKKKAEEAKKADeaKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE 1487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 738 TVQELSSACSPDTSALQLEQERliqlNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLK 817
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAK----KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEK 1563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 818 EKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHL------QEELERLREQQSRVVPAPEPRTLDSTTELE 891
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMkaeeakKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 892 SELSQLHRIKGHLEE-EIKHHQ---KMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLE----KDEEIKN 963
Cdd:PTZ00121 1644 EEKKKAEELKKAEEEnKIKAAEeakKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAeekkKAEELKK 1723
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 964 LQKT----IEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLT 1039
Cdd:PTZ00121 1724 AEEEnkikAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
.
gi 568978624 1040 K 1040
Cdd:PTZ00121 1804 F 1804
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1474-1779 |
4.44e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 4.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1474 EYQALQEtnmkfSMMLREKEFECHSMREKALAFEQLLKEKEQGKAgELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ 1553
Cdd:COG1196 214 RYRELKE-----ELKELEAELLLLKLRELEAELEELEAELEELEA-ELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1554 -------METSTLQNEVQRLRDKESRLNQELQRLRdhllESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENA 1626
Cdd:COG1196 288 aeeyellAELARLEQDIARLEERRRELEERLEELE----EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1627 SHQASVQVESLQEQLnmvsKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNHLLAEwKKKAE 1706
Cdd:COG1196 364 EEALLEAEAELAEAE----EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL-EEEEE 438
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568978624 1707 SLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSLVNSTEGKVDKVL 1779
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
758-1580 |
2.08e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 2.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 758 ERLIQL-NQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLrk 836
Cdd:TIGR02168 213 ERYKELkAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL-- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 837 nETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVvpapePRTLDsttELESELSQLHRIKGHLEEEIKHHQKMIE 916
Cdd:TIGR02168 291 -YALANEISRLEQQKQILRERLANLERQLEELEAQLEEL-----ESKLD---ELAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 917 DQNQSKLQLLQSLQEQKKELDEFKyqheqmsishtRLFLEKDEEIKNLQKTIEQIKAQLHEerqdsqtensdifQETKVQ 996
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLR-----------SKVAQLELQIASLNNEIERLEARLER-------------LEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 997 SLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLsKDEVGKLTQIIQQKDLEIQALHARISSasy 1076
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL-REELEEAEQALDAAERELAQLQARLDS--- 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1077 sqdvvyLQQQLHAYAMEREKVMVILNEKtrenSQLKTEYHKVIDIIS-------AKEAALiklqdenkkmstrfessGQD 1149
Cdd:TIGR02168 494 ------LERLQENLEGFSEGVKALLKNQ----SGLSGILGVLSELISvdegyeaAIEAAL-----------------GGR 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1150 MFKETIQNLSRIIREkdieIDALSQKCQTLLTVL---QTSGTGSEAGGVNSNQFEE----LLQERDKLKQQVKK-MEEWK 1221
Cdd:TIGR02168 547 LQAVVVENLNAAKKA----IAFLKQNELGRVTFLpldSIKGTEIQGNDREILKNIEgflgVAKDLVKFDPKLRKaLSYLL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1222 QQVMTtVQNMQhESAQLQEELHQLQAQVSVDSDnnsklqVDYTGLIQSYEQNETKLKNFGQelaqvQHSIGQLCNTKDLL 1301
Cdd:TIGR02168 623 GGVLV-VDDLD-NALELAKKLRPGYRIVTLDGD------LVRPGGVITGGSAKTNSSILER-----RREIEELEEKIEEL 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1302 LGKLDIMSPQLSSGSSLTSQAAEPLRASQSSEphessQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVER 1381
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKEL-----EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1382 KEHEQ----------ADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKVN--------------ENELLR 1437
Cdd:TIGR02168 765 ELEERleeaeeelaeAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRErleslerriaaterRLEDLE 844
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1438 QAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQgk 1517
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE-- 922
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568978624 1518 agELNQLLNAVKSMQEKTVTFQQE-RDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRL 1580
Cdd:TIGR02168 923 --KLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
427-917 |
3.65e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.92 E-value: 3.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 427 EKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQE- 505
Cdd:PRK03918 206 LREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEl 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 506 ------ATKHVILIK--DQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKmNIIKELTVQKEKLTHSEQALSDLQLTK 577
Cdd:PRK03918 286 kelkekAEEYIKLSEfyEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE-ERLEELKKKLKELEKRLEELEERHELY 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 578 QKLEDKVEDLvDQLSKSEKNNF--DIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQ 655
Cdd:PRK03918 365 EEAKAKKEEL-ERLKKRLTGLTpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGR 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 656 NLSEvEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKA----PLETELCRAEKRVLEE 731
Cdd:PRK03918 444 ELTE-EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAeqlkELEEKLKKYNLEELEK 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 732 ERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEI 811
Cdd:PRK03918 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYN 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 812 CIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHL-----QEELERLREqqsrvvpapepRTLDS 886
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELekkysEEEYEELRE-----------EYLEL 671
|
490 500 510
....*....|....*....|....*....|.
gi 568978624 887 TTELESELSQLHRIKGHLEEEIKHHQKMIED 917
Cdd:PRK03918 672 SRELAGLRAELEELEKRREEIKKTLEKLKEE 702
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1201-1760 |
4.39e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 4.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1201 EELLQERDKLKQQVKKMEEWKQqvmttvqnmqhesaqLQEELHQLQAQVSVDSDNNskLQVDYTGLIQSYEQNETKLKNF 1280
Cdd:COG1196 196 GELERQLEPLERQAEKAERYRE---------------LKEELKELEAELLLLKLRE--LEAELEELEAELEELEAELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1281 GQELAQVQHSIGQLCNTKDLLLGKLDIMspqlssgssltsQAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDATIR 1360
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEA------------QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1361 TLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEkdllIKAKSDQLHSSNENLANKVNENELLRQAV 1440
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE----LAEAEEELEELAEELLEALRAAAELAAQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1441 TNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQETNMKFSMMLREKEFECHSMREK--ALAFEQLLKEKEQGKA 1518
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELlaELLEEAALLEAALAEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1519 GELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ----------------------METSTLQNEVQRLRDKESRLNQE 1576
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagavavligveaayeaaLEAALAAALQNIVVEDDEVAAAA 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1577 LQRLRDHLLESEdshTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLS 1656
Cdd:COG1196 563 IEYLKAAKAGRA---TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1657 VSQEQ----VKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRL 1732
Cdd:COG1196 640 VTLAGrlreVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
570 580
....*....|....*....|....*...
gi 568978624 1733 TEQLDLKEEQIEELKKQNELHQEMLDDA 1760
Cdd:COG1196 720 ELEEEALEEQLEAEREELLEELLEEEEL 747
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
214-707 |
8.99e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.34 E-value: 8.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 214 QNIIKELKQNRSQDLDDHQHELSALQN--AHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTvtdhSKVYEMQN 291
Cdd:TIGR04523 175 LNLLEKEKLNIQKNIDKIKNKLLKLELllSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEIN----EKTTEISN 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 292 TIQILQMEKVESTKQIEDLENKIKEIhkrlssaehdqevwkkeqERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAV 371
Cdd:TIGR04523 251 TQTQLNQLKDEQNKIKKQLSEKQKEL------------------EQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKEL 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 372 EEetilphsssvaEVLRLQQALTDAENEImrlRSLNQDISlaednqKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEY 451
Cdd:TIGR04523 313 KS-----------ELKNQEKKLEEIQNQI---SQNNKIIS------QLNEQISQLKKELTNSESENSEKQRELEEKQNEI 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 452 EVIK----STATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQ---LSKQQSEG 524
Cdd:TIGR04523 373 EKLKkenqSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEikdLTNQDSVK 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 525 DSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKE 604
Cdd:TIGR04523 453 ELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESE 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 605 NHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQvQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEA 684
Cdd:TIGR04523 533 KKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQ-KSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK 611
|
490 500
....*....|....*....|...
gi 568978624 685 YEEVRNQLEESVAGNKQISLEKT 707
Cdd:TIGR04523 612 ISSLEKELEKAKKENEKLSSIIK 634
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
250-599 |
1.03e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 250 SRRHREELSDYEERIEELENLLQqggsgvtvTDHSKVYEMQNTIQILQMEKVESTKQIEDLEN--------------KIK 315
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELS--------SLQSELRRIENRLDELSQELSDASRKIGEIEKeieqleqeeeklkeRLE 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 316 EIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEaqqsaLRQSDAAVEEETILPHSSSV-AEVLRLQQALT 394
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND-----LEARLSHSRIPEIQAELSKLeEEVSRIEARLR 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 395 DAENEIMRLRSLNQdiSLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEyevIKSTATRDLDLFSQVHDLK-- 472
Cdd:TIGR02169 816 EIEQKLNRLTLEKE--YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE---LEELEAALRDLESRLGDLKke 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 473 --------HNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLsKQQSEGDSVIKKLKEELAGEKQRTHQ 544
Cdd:TIGR02169 891 rdeleaqlRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED-EEIPEEELSLEDVQAELQRVEEEIRA 969
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 568978624 545 LEDDKMNIIKEltvqkekLTHSEQALSDLQLTKQKLE---DKVEDLVDQLSKSEKNNF 599
Cdd:TIGR02169 970 LEPVNMLAIQE-------YEEVLKRLDELKEKRAKLEeerKAILERIEEYEKKKREVF 1020
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1029-1752 |
1.38e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.05 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1029 KLLNEKNTSLTKQIDQLsKDEVGKLTQIIQQKDLEIQALHARISSASYSQDVVYLQQQLHAYAMEREKVMV--ILNEKTR 1106
Cdd:pfam15921 92 RRLNESNELHEKQKFYL-RQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKedMLEDSNT 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1107 ENSQLKTEYHKVIDIISAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQTS 1186
Cdd:pfam15921 171 QIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEAL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1187 GTGSEaggvnsNQFEELLQE-RDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQV---------------S 1250
Cdd:pfam15921 251 KSESQ------NKIELLLQQhQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQArnqnsmymrqlsdleS 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1251 VDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRASQ 1330
Cdd:pfam15921 325 TVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLW 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1331 SSEPHESSQL--LQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKE- 1407
Cdd:pfam15921 405 DRDTGNSITIdhLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEEl 484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1408 --KDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENE------------KIVDASKGKET 1473
Cdd:pfam15921 485 taKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDhlrnvqtecealKLQMAEKDKVI 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1474 EYQALQETNM---------KFSMMLREKEFECHSMREKALAFEQL--LKEKEQGKAGELNQLLNAVKSMQEKTVTFQQER 1542
Cdd:pfam15921 565 EILRQQIENMtqlvgqhgrTAGAMQVEKAQLEKEINDRRLELQEFkiLKDKKDAKIRELEARVSDLELEKVKLVNAGSER 644
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1543 dqvMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLlesedSHTREALAAEDREAKLRKKVSVLE-EKLVSSSN 1621
Cdd:pfam15921 645 ---LRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF-----RNKSEEMETTTNKLKMQLKSAQSElEQTRNTLK 716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1622 AMENASHQASVQVESLQEQLNMVSKQRDetALQlsvSQEQVKQYALSLANLQmvlEHFQQEEKAMYSAELEKQNHLLAEW 1701
Cdd:pfam15921 717 SMEGSDGHAMKVAMGMQKQITAKRGQID--ALQ---SKIQFLEEAMTNANKE---KHFLKEEKNKLSQELSTVATEKNKM 788
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 568978624 1702 KKKAESLEGKVLSLQERLDEANAALDSAS-RLTEQLDLKEEQIEE---LKKQNEL 1752
Cdd:pfam15921 789 AGELEVLRSQERRLKEKVANMEVALDKASlQFAECQDIIQRQEQEsvrLKLQHTL 843
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
53-876 |
1.46e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.90 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 53 REENEATHSVLRSENERLKKLYTDLEEKHEASELQIKQQSSSYRSQLQQKEEEI----------NHLKARQLALQDELLR 122
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEeeyllyldylKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 123 LQSAAQSAHLGSGSAPAASASSSFSYGVSHRVSAFHEDDMDFGDVISSQQEINRLSNEVSRLESELGHWRHIAQT-KVQG 201
Cdd:pfam02463 249 EQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKkKAEK 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 202 AQSSDQTEICKLQNIIKELKQNRSQDLD--DHQHELSALQNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVT 279
Cdd:pfam02463 329 ELKKEKEEIEELEKELKELEIKREAEEEeeEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 280 VTDH---SKVYEMQNTIQILQMEKVESTKQIEDLENKI---KEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLK 353
Cdd:pfam02463 409 LLLElarQLEDLLKEEKKEELEILEEEEESIELKQGKLteeKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLEL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 354 LELSEAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQMCVQTLEKEKSLl 433
Cdd:pfam02463 489 LLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLV- 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 434 sQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILI 513
Cdd:pfam02463 568 -RALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKES 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 514 KDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSK 593
Cdd:pfam02463 647 GLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 594 SEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQnlsevEQLNEHLEQVAFD 673
Cdd:pfam02463 727 VQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKV-----EEEKEEKLKAQEE 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 674 LRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSAL 753
Cdd:pfam02463 802 ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 754 QLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEIcivKLKEKSSELQKELDKCAQT 833
Cdd:pfam02463 882 QKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE---LLLEEADEKEKEENNKEEE 958
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 568978624 834 LRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVV 876
Cdd:pfam02463 959 EERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLE 1001
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
305-890 |
1.62e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 305 KQIEDLENKikEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQsalRQSDAAVEEETILPHSSSVA 384
Cdd:PRK02224 194 AQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEE---RREELETLEAEIEDLRETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 385 EVLR----LQQALTDAENEIMRLRSLNQDIsLAE------DNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEyevI 454
Cdd:PRK02224 269 ETERereeLAEEVRDLRERLEELEEERDDL-LAEaglddaDAEAVEARREELEDRDEELRDRLEECRVAAQAHNEE---A 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 455 KSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSegdsvikkLKEE 534
Cdd:PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED--------FLEE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 535 LAGEKQRTHqleddkmniikeltvqkeklthseQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQ 614
Cdd:PRK02224 417 LREERDELR------------------------EREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 615 NEEELSTVRSELTQSQTQGSSRNVKDDL---LKERETQVQNLKQNLSEVEQL--------NEHLEQVAfDLRTENEELLE 683
Cdd:PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLERaedLVEAEDRIERLEERREDLEELiaerretiEEKRERAE-ELRERAAELEA 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 684 AYEEVRNQLEEsVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVleeerkyeqTVQELSSACSPDTSALQLEQERLIQL 763
Cdd:PRK02224 552 EAEEKREAAAE-AEEEAEEAREEVAELNSKLAELKERIESLERIR---------TLLAAIADAEDEIERLREKREALAEL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 764 NQEKDFEIAELKKSIEQMDTDHKrtKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQ- 842
Cdd:PRK02224 622 NDERRERLAEKRERKRELEAEFD--EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELREr 699
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 568978624 843 --TIEEKDRSLGSMKEENNHLQEELERLR-EQQSRVVPAPEpRTLDSTTEL 890
Cdd:PRK02224 700 reALENRVEALEALYDEAEELESMYGDLRaELRQRNVETLE-RMLNETFDL 749
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
288-909 |
4.34e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.44 E-value: 4.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 288 EMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSA----EHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSA 363
Cdd:TIGR00606 434 EKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSdrilELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADL 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 364 LRQSDAAVEE-ETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQD--ISLAEDNQKLQMCVQTLEKekslLSQEKEEL 440
Cdd:TIGR00606 514 DRKLRKLDQEmEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDelTSLLGYFPNKKQLEDWLHS----KSKEINQT 589
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 441 QISLSKLSSEYEVIKSTAtrdldlfSQVHDLKHNLEAKEQELNQSIHE---NEILMAELEELDKQNQEATKHVILikdqL 517
Cdd:TIGR00606 590 RDRLAKLNKELASLEQNK-------NHINNELESKEEQLSSYEDKLFDvcgSQDEESDLERLKEEIEKSSKQRAM----L 658
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 518 SKQQSEGDSVIKKLKEELAG---EKQRTHQLEDDKMNIIKELtvqKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKS 594
Cdd:TIGR00606 659 AGATAVYSQFITQLTDENQSccpVCQRVFQTEAELQEFISDL---QSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGR 735
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 595 EKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAF-- 672
Cdd:TIGR00606 736 QSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAkl 815
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 673 ----------DLRTENEELLEAYEEVRNQLEE----SVAGNKQISL--EKTAMLEWEKAPLETELCRAEKRVLEEERKYE 736
Cdd:TIGR00606 816 qgsdldrtvqQVNQEKQEKQHELDTVVSKIELnrklIQDQQEQIQHlkSKTNELKSEKLQIGTNLQRRQQFEEQLVELST 895
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 737 QtVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKeiCIVKL 816
Cdd:TIGR00606 896 E-VQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDG--KDDYL 972
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 817 KEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTElESELSQ 896
Cdd:TIGR00606 973 KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMG-QMQVLQ 1051
|
650
....*....|...
gi 568978624 897 LHRIKGHLEEEIK 909
Cdd:TIGR00606 1052 MKQEHQKLEENID 1064
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1199-1746 |
5.79e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 5.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1199 QFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLK 1278
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1279 NFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDAT 1358
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1359 IRTLQENNHRLSDSVAASSEVERKEhEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQ 1438
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLE-RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1439 AVTNLKERILILEmDISKLKGENEKIVDASKGKETEYQALQETNMKFSmmLREKEFECHSMREKALAFEQLLKEKEQGKA 1518
Cdd:COG1196 472 AALLEAALAELLE-ELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG--LRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1519 GELN--------QLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDS 1590
Cdd:COG1196 549 QNIVveddevaaAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1591 HTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLQEQlnmvsKQRDETALQLSVSQEQVKQYALSLA 1670
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE-----AELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568978624 1671 NLQMVLEHFQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEEL 1746
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1058-1767 |
6.24e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 6.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1058 QQKDLEIQALHA----RISSASYSQDVVYLQQQLHAYAMEREKVMVILNEKTRENSQLKTEyhkvidiISAKEAALIKLQ 1133
Cdd:TIGR02168 201 QLKSLERQAEKAerykELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAE-------LQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1134 DENKKMSTRFESsgqdmFKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQtsgtgseaggVNSNQFEELLQERDKLKQQ 1213
Cdd:TIGR02168 274 LEVSELEEEIEE-----LQKELYALANEISRLEQQKQILRERLANLERQLE----------ELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1214 VKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQ 1293
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1294 LCNTKDLLLGKLDIMSPQLSSGSSLTS-------QAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENN 1366
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAELEELeeeleelQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1367 HRLSDSVAASSEVErKEHEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKvnENELLRQavtNLKER 1446
Cdd:TIGR02168 499 ENLEGFSEGVKALL-KNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKK--AIAFLKQ---NELGR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1447 ILILEMDI---SKLKGENEKIVDASKGKETEYQALQETNMKFSM--------------------MLREKEFE-------- 1495
Cdd:TIGR02168 573 VTFLPLDSikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddldnaleLAKKLRPGyrivtldg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1496 -----CHSMREKALAFEQLLKEKEQgkagELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKE 1570
Cdd:TIGR02168 653 dlvrpGGVITGGSAKTNSSILERRR----EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1571 SRLNQELQRLRdhllESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSsnamENASHQASVQVESLQEQLNMVSKQRDE 1650
Cdd:TIGR02168 729 SALRKDLARLE----AEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELAEAEAEIEELEAQIEQLKEELKA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1651 TALQLSVSQEQVKQYALSLANLQMVLEHFQQeEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSas 1730
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLER-RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA-- 877
|
730 740 750
....*....|....*....|....*....|....*..
gi 568978624 1731 rLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSL 1767
Cdd:TIGR02168 878 -LLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
822-1578 |
8.08e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 8.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 822 ELQKELDKCAQTLRKNE-TLRQTIEEKDRSLGSMKEENNHLQEEleRLREQQSRVvpapeprtlDSTTELESELSQLHRI 900
Cdd:pfam15921 89 DLQRRLNESNELHEKQKfYLRQSVIDLQTKLQEMQMERDAMADI--RRRESQSQE---------DLRNQLQNTVHELEAA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 901 KGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFK-------YQHEQMSISHTR--------LFLEKDEEIKNLQ 965
Cdd:pfam15921 158 KCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEeasgkkiYEHDSMSTMHFRslgsaiskILRELDTEISYLK 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 966 KTIEQIKAQLHEERQDSQTENSDIFQETKvqslsiehgsekhdlskaetERLVKGIKERELEIKLLNEKNTSLTKQIDQL 1045
Cdd:pfam15921 238 GRIFPVEDQLEALKSESQNKIELLLQQHQ--------------------DRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1046 SKDevgklTQIIQQKDLEIQALHARISS---ASYSQDVVYLQQQLHAYA---MEREKVMVILNEK-----------TREN 1108
Cdd:pfam15921 298 QSQ-----LEIIQEQARNQNSMYMRQLSdleSTVSQLRSELREAKRMYEdkiEELEKQLVLANSEltearterdqfSQES 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1109 SQLKTEYHKVIDIISAKEAALIKLQDENKKMSTRfeSSGQDMfkeTIQNLSRIIREKDIEIDALSQKCQTLLTVLQTSGT 1188
Cdd:pfam15921 373 GNLDDQLQKLLADLHKREKELSLEKEQNKRLWDR--DTGNSI---TIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1189 GSEAGGVNSNQFEE----LLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYT 1264
Cdd:pfam15921 448 RQMAAIQGKNESLEkvssLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVD 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1265 GLIQSYEQnetkLKNFGQELAQVQHSigqlCNTKDLLLGKLD----IMSPQLSSGSSLTSQAAEPLRASQSSEPHessql 1340
Cdd:pfam15921 528 LKLQELQH----LKNEGDHLRNVQTE----CEALKLQMAEKDkvieILRQQIENMTQLVGQHGRTAGAMQVEKAQ----- 594
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1341 LQQEVDDLRKSLQE-------KDATIRTLQEnnhRLSDSvaassEVERKEHEQADSE----IKQLKEKQEVLQNLLKEKD 1409
Cdd:pfam15921 595 LEKEINDRRLELQEfkilkdkKDAKIRELEA---RVSDL-----ELEKVKLVNAGSErlraVKDIKQERDQLLNEVKTSR 666
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1410 LLIKAKSDQLHSSNENLANKVNENEL----LRQAVTNLKERILILEMDISKLKGENEKIVDASKG-------KETEYQAL 1478
Cdd:pfam15921 667 NELNSLSEDYEVLKRNFRNKSEEMETttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGmqkqitaKRGQIDAL 746
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1479 QETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGK---AGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQME 1555
Cdd:pfam15921 747 QSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKnkmAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDI 826
|
810 820
....*....|....*....|...
gi 568978624 1556 TSTLQNEVQRLRDKESRLNQELQ 1578
Cdd:pfam15921 827 IQRQEQESVRLKLQHTLDVKELQ 849
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
195-870 |
8.10e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.59 E-value: 8.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 195 AQTKVQGAQSSDQTEICKLQNIIKELKQNRSQDLDDHQHELSALQNAHQQKLTEISRRHREELSDYEERIEELENLLQQG 274
Cdd:TIGR00618 210 TPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRA 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 275 GSGVTVTDHSKVYEM--QNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQ--EVWKKEQERLEVEKREMTEQCE 350
Cdd:TIGR00618 290 RKAAPLAAHIKAVTQieQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRllQTLHSQEIHIRDAHEVATSIRE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 351 RLKLELSEAQQSALRQSDAAVEEETIlphSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQ-----MCVQT 425
Cdd:TIGR00618 370 ISCQQHTLTQHIHTLQQQKTTLTQKL---QSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQqryaeLCAAA 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 426 LEKEKSLLSQEKEELQISLSKLSSEYEVIKstatrDLDLFSQVHDLKHNLEAK---EQELNQSIHENEILMAELEELDKQ 502
Cdd:TIGR00618 447 ITCTAQCEKLEKIHLQESAQSLKEREQQLQ-----TKEQIHLQETRKKAVVLArllELQEEPCPLCGSCIHPNPARQDID 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 503 NQEATKHVILikdQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKL-- 580
Cdd:TIGR00618 522 NPGPLTRRMQ---RGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLqd 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 581 ----EDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQN 656
Cdd:TIGR00618 599 ltekLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 657 LSEVEQLNEHLEQVAFDLrteneELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYE 736
Cdd:TIGR00618 679 QLALQKMQSEKEQLTYWK-----EMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQAR 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 737 QTVQELSSACSPDTSALQLEqerlIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKqltqlinekeicivkl 816
Cdd:TIGR00618 754 TVLKARTEAHFNNNEEVTAA----LQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIP---------------- 813
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 568978624 817 keksSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLRE 870
Cdd:TIGR00618 814 ----SDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQ 863
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
610-936 |
8.47e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 8.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 610 EHIRQNEEELSTVRSELT--------QSQTQGSSRNVKDDlLKERETQV-----QNLKQNLSEVEQLNEHLEQVAFDLRT 676
Cdd:COG1196 182 EATEENLERLEDILGELErqleplerQAEKAERYRELKEE-LKELEAELlllklRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 677 ENEELLEAYEEVRNQLEEsvagnkqislektamlewekapLETELCRAEKRVLEEERKYEQTVQELSSACSpDTSALQLE 756
Cdd:COG1196 261 ELAELEAELEELRLELEE----------------------LELELEEAQAEEYELLAELARLEQDIARLEE-RRRELEER 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 757 QERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEIcivKLKEKSSELQKELDKCAQTLRK 836
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA---ELAEAEEELEELAEELLEALRA 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 837 NETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIE 916
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340
....*....|....*....|
gi 568978624 917 DQNQSKLQLLQSLQEQKKEL 936
Cdd:COG1196 475 LEAALAELLEELAEAAARLL 494
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1345-1767 |
9.18e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 9.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1345 VDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNL--LKEKDLLIKAKSDQLHSS 1422
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELpeLREELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1423 NENLANKVNENELLRQAVTNLKERILILEMDISKLKG------ENEKIVDASKGKETEYQALQETNMKFSMMLREKEFEC 1496
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKeieeleEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1497 HSMREKALAFEQLLKEKEQGKAgELNQLLNAVKSMQEKTVTFQqERDQVMLALKQKQMETSTLQNEVQRLR-DKESRLNQ 1575
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEE-RLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1576 ELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEE-KLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQ 1654
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKaKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1655 LSVSQEQVKQYALSLANLQMV---------LEHFQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAA 1725
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELiklkelaeqLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 568978624 1726 LDSASRLTEQLDLKEEQIEELKKQ-NELHQEMLDDAQKKLMSL 1767
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKElEELGFESVEELEERLKEL 597
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
288-508 |
9.91e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 9.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 288 EMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQS 367
Cdd:COG4942 38 ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 368 daAVEEETILPHSSSVAEVLRLQQALtdaeNEIMRLRsLNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKL 447
Cdd:COG4942 118 --RQPPLALLLSPEDFLDAVRRLQYL----KYLAPAR-REQAEELRADLAELAALRAELEAERAELEALLAELEEERAAL 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568978624 448 SSEYEVIKSTATRdldlfsqvhdLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATK 508
Cdd:COG4942 191 EALKAERQKLLAR----------LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
407-939 |
1.11e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.87 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 407 NQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEY--------------EVIKSTATRDLDLFSQVHDLK 472
Cdd:TIGR04523 152 KELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLlklelllsnlkkkiQKNKSLESQISELKKQNNQLK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 473 HNLEAKEQELNQsiheneiLMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDK--- 549
Cdd:TIGR04523 232 DNIEKKQQEINE-------KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNnqk 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 550 -MNIIKELtvqKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSEltq 628
Cdd:TIGR04523 305 eQDWNKEL---KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE--- 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 629 sqtqgssRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTA 708
Cdd:TIGR04523 379 -------NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSV 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 709 M------LEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACS--------------------PDTSALQLEQERLIQ 762
Cdd:TIGR04523 452 KeliiknLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKelkklneekkeleekvkdltKKISSLKEKIEKLES 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 763 LNQEKDFEIAELKKSIEQMDTDHKRT----------------KETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKE 826
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFELKKEnlekeideknkeieelKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 827 LDKCAQTLRKNETLRQTIEEKDRSLGSMKEEnnhLQEELERLREQQSRVVpAPEPRTLDSTTELESELSQLHRIKGHLEE 906
Cdd:TIGR04523 612 ISSLEKELEKAKKENEKLSSIIKNIKSKKNK---LKQEVKQIKETIKEIR-NKWPEIIKKIKESKTKIDDIIELMKDWLK 687
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 568978624 907 EIKHHQK-------------MIEDQNQSKLQLLQSLQEQKKELDEF 939
Cdd:TIGR04523 688 ELSLHYKkyitrmirikdlpKLEEKYKEIEKELKKLDEFSKELENI 733
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
540-1354 |
1.40e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 540 QRTHQLEDDKMNIikELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEEL 619
Cdd:TIGR02168 213 ERYKELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 620 STVRSELtqsqtqgssrnvkDDLLKERETQVQNLKQNLSEVEQLNEHLEQvafdLRTENEELLEAYEEVRNQLEEsVAGN 699
Cdd:TIGR02168 291 YALANEI-------------SRLEQQKQILRERLANLERQLEELEAQLEE----LESKLDELAEELAELEEKLEE-LKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 700 KQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSpdtsalqleqerliqlnqekdfEIAELKKSIE 779
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN----------------------EIERLEARLE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 780 QMDTDHKRTKETLSSslEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLrknETLRQTIEEKDRSLGSMKEENN 859
Cdd:TIGR02168 411 RLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEELQEELERLEEAL---EELREELEEAEQALDAAERELA 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 860 HLQEELERLREQQSRVVPAPEprtldSTTELESELSQLHRIKGHLEEEIKHHQK----------------MIEDQNQSKL 923
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFSE-----GVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalggrlqavVVENLNAAKK 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 924 QLLQSLQEQKK-----ELDEFKYQHEQmsiSHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQ----------DSQTENSD 988
Cdd:TIGR02168 561 AIAFLKQNELGrvtflPLDSIKGTEIQ---GNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALEL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 989 IFQETKVQSL------------SIEHGSEKHDLSKAETERlvkGIKERELEIKLLNEKNTSLTKQIDQLsKDEVGKLTQI 1056
Cdd:TIGR02168 638 AKKLRPGYRIvtldgdlvrpggVITGGSAKTNSSILERRR---EIEELEEKIEELEEKIAELEKALAEL-RKELEELEEE 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1057 IQQKDLEIQALHARISSASYSQDVVYLQQQLHAYAMEREKVMviLNEKTRENSQLKTEYHKVIDIISAKEAALIKLQDEN 1136
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE--LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1137 KKMSTRFESSgqdmfKETIQNLSRIIREKDIEIDALSQKCQTLLtvlqtsgtgseaggvnsNQFEELLQERDKLKQQVKK 1216
Cdd:TIGR02168 792 EQLKEELKAL-----REALDELRAELTLLNEEAANLRERLESLE-----------------RRIAATERRLEDLEEQIEE 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1217 MEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCN 1296
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 568978624 1297 TKDLLLGKLDIMSPQLSSGSSLTSQAAEPLrasqSSEPHESSQLLQQEVDDLRKSLQE 1354
Cdd:TIGR02168 930 RLEGLEVRIDNLQERLSEEYSLTLEEAEAL----ENKIEDDEEEARRRLKRLENKIKE 983
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1319-1672 |
1.43e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 53.75 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1319 TSQAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDATirTLQENNHRLSDSVAASSEVERKEHEQADSEIK------ 1392
Cdd:PLN02939 51 GKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKS--TSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGeqlsdf 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1393 QLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKvnenellrqavTNLKERILILEMDISKlkgENEKIVDASKGK- 1471
Cdd:PLN02939 129 QLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEK-----------EALQGKINILEMRLSE---TDARIKLAAQEKi 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1472 ETEYQALQETNMKFSMMLR-EKEFECHSMREKALafeQLLKEKEQGKAGELNQL---LNAVKSMQEKTVTFQQERDQVML 1547
Cdd:PLN02939 195 HVEILEEQLEKLRNELLIRgATEGLCVHSLSKEL---DVLKEENMLLKDDIQFLkaeLIEVAETEERVFKLEKERSLLDA 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1548 ALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSsnameNAS 1627
Cdd:PLN02939 272 SLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEA-----NVS 346
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 568978624 1628 HQASVQVESLQEQLNMVSKQRD----ETALQLSVSQEQVKQYALSLANL 1672
Cdd:PLN02939 347 KFSSYKVELLQQKLKLLEERLQasdhEIHSYIQLYQESIKEFQDTLSKL 395
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
307-1055 |
2.22e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 307 IEDLENKIKEIHKRLSSAE--HDQEVWKKEQERLEVEKREMTEQCER-----LKLELSEAQQSALRQSDAAVEE------ 373
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNelHEKQKFYLRQSVIDLQTKLQEMQMERdamadIRRRESQSQEDLRNQLQNTVHEleaakc 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 374 --ETILPHSSSVAEVLRlqQALTDAENEIMRLRSLNQDISLAEDNQKLQ---MCVQTLEKEKSLLSQEKEELQISLSKL- 447
Cdd:pfam15921 160 lkEDMLEDSNTQIEQLR--KMMLSHEGVLQEIRSILVDFEEASGKKIYEhdsMSTMHFRSLGSAISKILRELDTEISYLk 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 448 ------SSEYEVIKSTATRDLDLFSQVHdlkhnleakEQELNQSIHENEILMAELEE----LDKQNQEATKHVILIKDQL 517
Cdd:pfam15921 238 grifpvEDQLEALKSESQNKIELLLQQH---------QDRIEQLISEHEVEITGLTEkassARSQANSIQSQLEIIQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 518 SKQQ-------SEGDSVIKKLKEELAgEKQRTHqlEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQ 590
Cdd:pfam15921 309 RNQNsmymrqlSDLESTVSQLRSELR-EAKRMY--EDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 591 LSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRnvkDDLLKERETQVQ-NLKQNLSEVEQLNEHLEQ 669
Cdd:pfam15921 386 LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRL---EALLKAMKSECQgQMERQMAAIQGKNESLEK 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 670 VAfdlrTENEELLEAYEEVRNQLEESVAgnKQISLEKTamlewekapletelcraekrvleeerkyEQTVQELSSACSPD 749
Cdd:pfam15921 463 VS----SLTAQLESTKEMLRKVVEELTA--KKMTLESS----------------------------ERTVSDLTASLQEK 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 750 TSALQLEQERLIQLNQEKDFEIAELKKSieQMDTDHKRTKETLSSSLEEQkqltqlinekeicivklkeksselQKELDK 829
Cdd:pfam15921 509 ERAIEATNAEITKLRSRVDLKLQELQHL--KNEGDHLRNVQTECEALKLQ------------------------MAEKDK 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 830 CAQTLRKN-ETLRQTIEEKDRSLGSMKEENNHLQEEL--ERLREQQSRVVPAPEPRTLdstTELESELSQLHRIKGHLEE 906
Cdd:pfam15921 563 VIEILRQQiENMTQLVGQHGRTAGAMQVEKAQLEKEIndRRLELQEFKILKDKKDAKI---RELEARVSDLELEKVKLVN 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 907 EIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSishtRLFLEKDEEiknLQKTIEQIKAQLHEERQD-SQTE 985
Cdd:pfam15921 640 AGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLK----RNFRNKSEE---METTTNKLKMQLKSAQSElEQTR 712
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568978624 986 NS-DIFQETKVQSLSIEHGSEKHDLSKAETerlvkgIKERELEIKLLNEKNTSLTKQiDQLSKDEVGKLTQ 1055
Cdd:pfam15921 713 NTlKSMEGSDGHAMKVAMGMQKQITAKRGQ------IDALQSKIQFLEEAMTNANKE-KHFLKEEKNKLSQ 776
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
467-1029 |
2.42e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 2.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 467 QVHDLKHNLEAKEQELNQSIHENEILMAELEEL-DKQNQEATKHVILIKDqLSKQQSEGD---SVIKKLKEELAGEKQRT 542
Cdd:TIGR04523 55 ELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLnDKLKKNKDKINKLNSD-LSKINSEIKndkEQKNKLEVELNKLEKQK 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 543 HQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDI--------------------- 601
Cdd:TIGR04523 134 KENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIknkllklelllsnlkkkiqkn 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 602 ----------QKENHELREHIRQNEEELSTVRSELTQSQTQ-----GSSRNVKDDL-------------LKERETQVQNL 653
Cdd:TIGR04523 214 kslesqiselKKQNNQLKDNIEKKQQEINEKTTEISNTQTQlnqlkDEQNKIKKQLsekqkeleqnnkkIKELEKQLNQL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 654 KQNLSEVEqlNEHLEQVAFDLRTENEELLEAYEEVRNQLEESvagNKQIS--------LEKTAM-LEWEKAPLETELCRA 724
Cdd:TIGR04523 294 KSEISDLN--NQKEQDWNKELKSELKNQEKKLEEIQNQISQN---NKIISqlneqisqLKKELTnSESENSEKQRELEEK 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 725 EKRVLEEERKYEQTVQELSSACSpDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQ 804
Cdd:TIGR04523 369 QNEIEKLKKENQSYKQEIKNLES-QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTN 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 805 LINEKEICIVKLKEKSSELQKELDKCAQTLRKNET----LRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVvpape 880
Cdd:TIGR04523 448 QDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQnleqKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL----- 522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 881 prtLDSTTELESELSQLHRIKGHLEEEIKHhqkmiEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTrlflEKDEE 960
Cdd:TIGR04523 523 ---KEKIEKLESEKKEKESKISDLEDELNK-----DDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQE----EKQEL 590
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568978624 961 IKNLQKTIEQIKAQLhEERQDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIK 1029
Cdd:TIGR04523 591 IDQKEKEKKDLIKEI-EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1539-1774 |
2.45e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 2.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1539 QQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRdhllesedshtREALAAEDREAKLRKKVSVLEEKLVS 1618
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-----------RRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1619 SSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYS--AELEKQNH 1696
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAdlAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568978624 1697 LLAEWKKKAESLEGKVLSLQERLDEANAALDSA-SRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSLVNSTEGK 1774
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLlARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
297-897 |
4.51e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 4.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 297 QMEKVEstKQIEDLEnKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREmteqcerLKLELSEAQQSALRQSDAAVEeeti 376
Cdd:COG4913 243 ALEDAR--EQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQ-------RRLELLEAELEELRAELARLE---- 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 377 lphsssvAEVLRLQQALTDAENEIMRLRSLNQDISLAEdnqklqmcVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKS 456
Cdd:COG4913 309 -------AELERLEARLDALREELDELEAQIRGNGGDR--------LEQLEREIERLERELEERERRRARLEALLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 457 TATRDLDLF----SQVHDLKHNLEAKEQELNQSIHEneiLMAELEELDKQNQEATKHVilikDQLSKQQSEGDSVIKKLK 532
Cdd:COG4913 374 PLPASAEEFaalrAEAAALLEALEEELEALEEALAE---AEAALRDLRRELRELEAEI----ASLERRKSNIPARLLALR 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 533 EELAGEKQrthqLEDDKMNIIKEL-TVQKEkltHS------EQALSDLQLT---KQKLEDKVEDLVDQLSKSEKNNFD-- 600
Cdd:COG4913 447 DALAEALG----LDEAELPFVGELiEVRPE---EErwrgaiERVLGGFALTllvPPEHYAAALRWVNRLHLRGRLVYErv 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 601 --------------------IQKENHELREHIRQ------------NEEELSTVRSELTQS-QT-QGSSRNVKDDLLKER 646
Cdd:COG4913 520 rtglpdperprldpdslagkLDFKPHPFRAWLEAelgrrfdyvcvdSPEELRRHPRAITRAgQVkGNGTRHEKDDRRRIR 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 647 ETQV------QNLKQNLSEVEQLNEHLEQVAFDLRtENEELLEAYEEVRNQLEesvagnkqisleKTAMLEWEkaPLETE 720
Cdd:COG4913 600 SRYVlgfdnrAKLAALEAELAELEEELAEAEERLE-ALEAELDALQERREALQ------------RLAEYSWD--EIDVA 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 721 LCRAEKRVLEEERkyeqtvQELSSAcSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKetlssslEEQK 800
Cdd:COG4913 665 SAEREIAELEAEL------ERLDAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE-------EELD 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 801 QLTQLINEKEicivklKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPE 880
Cdd:COG4913 731 ELQDRLEAAE------DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAET 804
|
650 660
....*....|....*....|
gi 568978624 881 ---PRTLDSTTELESELSQL 897
Cdd:COG4913 805 adlDADLESLPEYLALLDRL 824
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1302-1764 |
6.01e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 6.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1302 LGKLDIMSPQLSSGSSLTSQAAEplraSQSSEPHESSQLLQQEVDDLRKSLQ----EKDATIRTLQENNHRLSdsvaass 1377
Cdd:PRK02224 176 LGVERVLSDQRGSLDQLKAQIEE----KEEKDLHERLNGLESELAELDEEIEryeeQREQARETRDEADEVLE------- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1378 everkEHEQADSEIKQLKEKQEVLQnllkekdllikaksdqlhssnENLANKVNENELLRQAVTNLKERILILEMDISKL 1457
Cdd:PRK02224 245 -----EHEERREELETLEAEIEDLR---------------------ETIAETEREREELAEEVRDLRERLEELEEERDDL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1458 KGE-------NEKIVDASKGKETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQgKAGELNQLLNAVKS 1530
Cdd:PRK02224 299 LAEaglddadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE-EAAELESELEEARE 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1531 MQEKTVTFQQERDQVMLALKQKQMETST-----------LQNEVQRLRDKESRLNQELQRLRDHLLESED---------- 1589
Cdd:PRK02224 378 AVEDRREEIEELEEEIEELRERFGDAPVdlgnaedfleeLREERDELREREAELEATLRTARERVEEAEAlleagkcpec 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1590 -------SHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASH--QASVQVESLQEQLNMVSKQRDETALQLSVSQE 1660
Cdd:PRK02224 458 gqpvegsPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDlvEAEDRIERLEERREDLEELIAERRETIEEKRE 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1661 QVKQyalslanlqmvlehfQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDL-- 1738
Cdd:PRK02224 538 RAEE---------------LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAia 602
|
490 500
....*....|....*....|....*..
gi 568978624 1739 -KEEQIEELKKQNELHQEMLDDAQKKL 1764
Cdd:PRK02224 603 dAEDEIERLREKREALAELNDERRERL 629
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
336-630 |
6.88e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 6.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 336 ERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDIslaed 415
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDL----- 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 416 nQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKstatrdldlfSQVHDLKHNLEAKEQElnQSIHENEILMAE 495
Cdd:COG4913 688 -AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE----------EELDELQDRLEAAEDL--ARLELRALLEER 754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 496 LEELDKQNQEATkhvilIKDQLSKQQSEGDSVIKKLKEELAgEKQRTHQLEDDkmNIIKELTVQKEKLTHSEQALSdlQL 575
Cdd:COG4913 755 FAAALGDAVERE-----LRENLEERIDALRARLNRAEEELE-RAMRAFNREWP--AETADLDADLESLPEYLALLD--RL 824
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 568978624 576 TKQKLEDKVEDLVDQLSKSEKNNF-DIQkenHELREHIRQNEEELSTVRSELTQSQ 630
Cdd:COG4913 825 EEDGLPEYEERFKELLNENSIEFVaDLL---SKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
628-1047 |
7.95e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 7.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 628 QSQTQGSSRNVKDDLLKERET----QVQNLKQNLSEVEQLNEHLE---QVAFDLRTENEELLEAYEEVRNQLEESVAGNK 700
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKdlheRLNGLESELAELDEEIERYEeqrEQARETRDEADEVLEEHEERREELETLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 701 QISlEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSAcSPDTSALQLEQERLiqlnqekDFEIAELKKSIEQ 780
Cdd:PRK02224 262 DLR-ETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLD-DADAEAVEARREEL-------EDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 781 MDTDHKRTKETLSSSLEEQKQLTQLINEkeicivkLKEKSSELQKELDKCAQTLRKNET----LRQTIEEKDRSLGSMKE 856
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEE-------LREEAAELESELEEAREAVEDRREeieeLEEEIEELRERFGDAPV 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 857 ENNHLQEELERLREQQSRVVPapepRTLDSTTELESELSQLHRIKGHLEE----------EIKHHQKMIEDQNQSKLQLL 926
Cdd:PRK02224 406 DLGNAEDFLEELREERDELRE----REAELEATLRTARERVEEAEALLEAgkcpecgqpvEGSPHVETIEEDRERVEELE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 927 QslqeqkkELDEFKYQHEQMSISHTRLflekdEEIKNLQKTIEQI--KAQLHEERQDSQTENSDIfQETKVQSL---SIE 1001
Cdd:PRK02224 482 A-------ELEDLEEEVEEVEERLERA-----EDLVEAEDRIERLeeRREDLEELIAERRETIEE-KRERAEELrerAAE 548
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 568978624 1002 HGSEKHDLSKAETERLVKGIKERElEIKLLNEKNTSLTKQIDQLSK 1047
Cdd:PRK02224 549 LEAEAEEKREAAAEAEEEAEEARE-EVAELNSKLAELKERIESLER 593
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
220-700 |
9.82e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 9.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 220 LKQNRSQDLDDHQHELSALQNAHQQKLTEIS-------------RRHREE----LSDYEERIEELENLlqqggsgvtvtd 282
Cdd:PRK02224 189 LDQLKAQIEEKEEKDLHERLNGLESELAELDeeieryeeqreqaRETRDEadevLEEHEERREELETL------------ 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 283 HSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQS 362
Cdd:PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 363 ALRQSDaaveeetilphsssvaEVLRLQQALTDAENEIMRLRSlnqdiSLAEDNQKLQMCVQTLEKEKSLLSQEKEELQi 442
Cdd:PRK02224 337 AQAHNE----------------EAESLREDADDLEERAEELRE-----EAAELESELEEAREAVEDRREEIEELEEEIE- 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 443 SLSKLSSEYEVIKSTATRDLDLFSQVHDLKHN----LEAKEQELNQSIHENEILMAELEELD-KQNQEATKHVILIKDQl 517
Cdd:PRK02224 395 ELRERFGDAPVDLGNAEDFLEELREERDELREreaeLEATLRTARERVEEAEALLEAGKCPEcGQPVEGSPHVETIEED- 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 518 SKQQSEGDSVIKKLKEELAGEKQRTHQLEDdkmniIKELTVQKEKLTHSEQALSDLQLTKqklEDKVEDLVDQLSKSEKN 597
Cdd:PRK02224 474 RERVEELEAELEDLEEEVEEVEERLERAED-----LVEAEDRIERLEERREDLEELIAER---RETIEEKRERAEELRER 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 598 NFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAfDLRTE 677
Cdd:PRK02224 546 AAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALA-ELNDE 624
|
490 500
....*....|....*....|...
gi 568978624 678 NEELLEAYEEVRNQLEESVAGNK 700
Cdd:PRK02224 625 RRERLAEKRERKRELEAEFDEAR 647
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
53-694 |
1.03e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 53 REENEATHSVLRSENERLKKLYTDLEEKHEASELQIKQQSSSYR---SQLQQKEEEINHLKARQLALQDELLRLQSAAQS 129
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYellAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 130 AHlgsgsapaasasssfsygvshrvsafheddmdfGDVISSQQEINRLSNEVSRLESELGHWRHIAQTKVQGAQSSDQTE 209
Cdd:COG1196 328 LE---------------------------------EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 210 ICKLQNIIKELKQ--NRSQDLDDHQHELSALQNAHQQKLTEISRRHREELSDYEERIEELENLLQQggsgvtvtdHSKVY 287
Cdd:COG1196 375 AEAEEELEELAEEllEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE---------EEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 288 EMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQS 367
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 368 DAAV-----EEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQmcvQTLEKEKSLLSQEKEELQI 442
Cdd:COG1196 526 VAVLigveaAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR---ARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 443 SLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEEL-DKQNQEATKHVILIKDQLSKQQ 521
Cdd:COG1196 603 LVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGgSLTGGSRRELLAALLEAEAELE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 522 SEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDI 601
Cdd:COG1196 683 ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 602 QKENHELREHIRQNE----------EELSTVRSELTQSQTQgssrnvKDDLLKERETqvqnLKQNLSEVEqlnehleqva 671
Cdd:COG1196 763 EELERELERLEREIEalgpvnllaiEEYEELEERYDFLSEQ------REDLEEARET----LEEAIEEID---------- 822
|
650 660
....*....|....*....|...
gi 568978624 672 fdlRTENEELLEAYEEVRNQLEE 694
Cdd:COG1196 823 ---RETRERFLETFDAVNENFQE 842
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1121-1758 |
1.27e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.49 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1121 IISAKEAALIKLQDENKKMSTRFEssgqdmfkETIQNLSRIIREKDieidALSQKCQTLLtvlQTSGTGSEAGGVNSNQF 1200
Cdd:pfam05483 114 IIEAQRKAIQELQFENEKVSLKLE--------EEIQENKDLIKENN----ATRHLCNLLK---ETCARSAEKTKKYEYER 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1201 EELLQERDKLKQQVKKM----EEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKlQVDYTgLIQSYEQnETK 1276
Cdd:pfam05483 179 EETRQVYMDLNNNIEKMilafEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEK-QVSLL-LIQITEK-ENK 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1277 LKNFGQELAQVQHSIGQLcntkdlllgkldimspqlssgssltsQAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKD 1356
Cdd:pfam05483 256 MKDLTFLLEESRDKANQL--------------------------EEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSM 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1357 ATIRTLQENNHRLSDSVAASSEVERKEHEQADSE-------IKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANK 1429
Cdd:pfam05483 310 STQKALEEDLQIATKTICQLTEEKEAQMEELNKAkaahsfvVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKK 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1430 VNENEllrqAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQETNMKFSMMLREKEFECHSMREKALAF--- 1506
Cdd:pfam05483 390 SSELE----EMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIkts 465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1507 -EQLLKEKEQGKAGELNQLLNAVK--------SMQEKTVTfqQERDQVMLALKQKQ--------------METSTLQNEV 1563
Cdd:pfam05483 466 eEHYLKEVEDLKTELEKEKLKNIEltahcdklLLENKELT--QEASDMTLELKKHQediinckkqeermlKQIENLEEKE 543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1564 QRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHqasvQVESLQEQLNM 1643
Cdd:pfam05483 544 MNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNK----NIEELHQENKA 619
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1644 VSKQRDETALQLSVSQEQVKQYALSLANLQmvlehfqqeekamysaelEKQNHLLAEWKKKAESLEGKVLSLQERLDEAN 1723
Cdd:pfam05483 620 LKKKGSAENKQLNAYEIKVNKLELELASAK------------------QKFEEIIDNYQKEIEDKKISEEKLLEEVEKAK 681
|
650 660 670
....*....|....*....|....*....|....*.
gi 568978624 1724 AALDSASRLTEQLDLK-EEQIEELKKQNELHQEMLD 1758
Cdd:pfam05483 682 AIADEAVKLQKEIDKRcQHKIAEMVALMEKHKHQYD 717
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
604-919 |
1.31e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.12 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 604 ENHELREHIRQNEEELSTVRSELTQSQTQGSSrnVKDDLLKERETQVQNLKqNLSEVEQLNEHLEQVAFDLRTENEELLE 683
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTVRYNGQTM--TENEFLNQLLHIVQHQK-AVSERQQQEKFEKMEQERLRQEKEEKAR 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 684 AYEEvRNQLEESVAGnKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEqtvqelssacspdtsalqLEQERliql 763
Cdd:pfam17380 311 EVER-RRKLEEAEKA-RQAEMDRQAAIYAEQERMAMERERELERIRQEERKRE------------------LERIR---- 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 764 NQEKDFEIAELKKsIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQtlrknETLRQT 843
Cdd:pfam17380 367 QEEIAMEISRMRE-LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ-----REVRRL 440
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568978624 844 IEEKDRSLGSMKEENNHLQEELERLREQQSRvvPAPEPRTLDSTTELESELSQLHRIKghLEEEIK-HHQKMIEDQN 919
Cdd:pfam17380 441 EEERAREMERVRLEEQERQQQVERLRQQEEE--RKRKKLELEKEKRDRKRAEEQRRKI--LEKELEeRKQAMIEEER 513
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
414-977 |
1.61e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 414 EDNQKLQMCVQTLEKEKSLLSQEKEELQislSKLSSEYEvikstatrdldLFSQVHDLKHNLEAKEQELNQSIHENEILM 493
Cdd:pfam01576 19 ERQQKAESELKELEKKHQQLCEEKNALQ---EQLQAETE-----------LCAEAEEMRARLAARKQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 494 AELEELDKQNQEATK----HVILIKDQLSKQQS----------EGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQ 559
Cdd:pfam01576 85 EEEEERSQQLQNEKKkmqqHIQDLEEQLDEEEAarqklqlekvTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 560 KEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVK 639
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 640 DDLLKERETQVQNLKQN-LSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQI--SLEKTAMLEWEKAP 716
Cdd:pfam01576 245 LQAALARLEEETAQKNNaLKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELedTLDTTAAQQELRSK 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 717 LETELCRAEKRVLEEERKYEQTVQELSS--ACSPDTSALQLEQERLIQLNQEK-----DFEIAELKKSIE-----QMDTD 784
Cdd:pfam01576 325 REQEVTELKKALEEETRSHEAQLQEMRQkhTQALEELTEQLEQAKRNKANLEKakqalESENAELQAELRtlqqaKQDSE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 785 HKRTKetlsssLEEQKQLTQL-INEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSmkeennHLQE 863
Cdd:pfam01576 405 HKRKK------LEGQLQELQArLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES------QLQD 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 864 ELERLREqqsrvvpapeprtldsttELESELSQLHRIKgHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQH 943
Cdd:pfam01576 473 TQELLQE------------------ETRQKLNLSTRLR-QLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKL 533
|
570 580 590
....*....|....*....|....*....|....
gi 568978624 944 EQMSISHTRLflekDEEIKNLQKTIEQIKAQLHE 977
Cdd:pfam01576 534 EEDAGTLEAL----EEGKKRLQRELEALTQQLEE 563
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
169-693 |
1.64e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.90 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 169 SSQQEINRLSNEVSRLESELghwrhiaqTKVQGAQSSDQTEICKLQNIIKELKQ-----------------NRSQDLDDH 231
Cdd:PRK01156 239 SALNELSSLEDMKNRYESEI--------KTAESDLSMELEKNNYYKELEERHMKiindpvyknrnyindyfKYKNDIENK 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 232 QHELSALqNAHQQKLTEISRRHREELSDYEE------RIEELENLLQQggsgvTVTDHSKVYEMQNTIQILQMEKVESTK 305
Cdd:PRK01156 311 KQILSNI-DAEINKYHAIIKKLSVLQKDYNDyikkksRYDDLNNQILE-----LEGYEMDYNSYLKSIESLKKKIEEYSK 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 306 QIEDLENKIKEIHKRlssAEHDQEVWKKEQERLEVEKREMTEQCERLklelsEAQQSALRQSDAAVEEETILPHSSSVAE 385
Cdd:PRK01156 385 NIERMSAFISEILKI---QEIDPDAIKKELNEINVKLQDISSKVSSL-----NQRIRALRENLDELSRNMEMLNGQSVCP 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 386 VLrlqqALTDAENEIMRLRSlnqdiSLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEyEVIKSTATRDL--D 463
Cdd:PRK01156 457 VC----GTTLGEEKSNHIIN-----HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESE-EINKSINEYNKieS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 464 LFSQVHDLKHNL-EAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKD-QLSKQQSEGDSVIKKLKEELAGEKQR 541
Cdd:PRK01156 527 ARADLEDIKIKInELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLiDIETNRSRSNEIKKQLNDLESRLQEI 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 542 THQLEDDKM---NIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKseknnfdiqkenhelrehIRQNEEE 618
Cdd:PRK01156 607 EIGFPDDKSyidKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAE------------------IDSIIPD 668
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568978624 619 LSTVRSELTQSQTQgssrnvkddlLKERETQVQNLKQNLSEVEQLNEhleqvafDLRTENEELLEAYEEVRNQLE 693
Cdd:PRK01156 669 LKEITSRINDIEDN----------LKKSRKALDDAKANRARLESTIE-------ILRTRINELSDRINDINETLE 726
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1006-1616 |
3.83e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 3.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1006 KHDLSKAETERLVKGIKERELEIK-LLNEkntsLTKQIDQLSKD-----EVGKLTQIIQQKDLEIQALHARISSASYSQd 1079
Cdd:COG1196 169 KYKERKEEAERKLEATEENLERLEdILGE----LERQLEPLERQaekaeRYRELKEELKELEAELLLLKLRELEAELEE- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1080 vvyLQQQLHAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALIKLQDENKKmstrfESSGQDMFKETIQNLS 1159
Cdd:COG1196 244 ---LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR-----LEQDIARLEERRRELE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1160 RIIREKDIEIDALSQKCQTLLTVLQTSgtgSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQ 1239
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEEL---EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1240 EELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQ-LCNTKDLLLGKLDIMSPQLSSGSSL 1318
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEaAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1319 TSQAAEPLRASQSSEPHESSQLLQQEVDDLRkSLQEKDATIRTLQENNHRLSDSVAASSEVErKEHEQADSEIKQLKEKQ 1398
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADY-EGFLEGVKAALLLAGLRGLAGAVAVLIGVE-AAYEAALEAALAAALQN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1399 EVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQAL 1478
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1479 QETNMKFSMM-----LREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ 1553
Cdd:COG1196 631 RLEAALRRAVtlagrLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568978624 1554 METSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDRE---AKLRKKVSVLEEKL 1616
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpdlEELERELERLEREI 776
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
153-871 |
5.91e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.30 E-value: 5.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 153 RVSAFHEDDMDFGDVISSQQEINRLSNEVSRLESELGHWRHIaqtkvQGAQSSDQTEICKLQNIIKELKQNRSQDL---- 228
Cdd:pfam12128 222 QVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHL-----HFGYKSDETLIASRQEERQETSAELNQLLrtld 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 229 -------DDHQHELSALQNAHQQKLTEI----SRRHREELSDYEERIEELENL--------LQQGGSGVTVTDHSKVYEM 289
Cdd:pfam12128 297 dqwkekrDELNGELSAADAAVAKDRSELealeDQHGAFLDADIETAAADQEQLpswqseleNLEERLKALTGKHQDVTAK 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 290 QNT-IQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHD--QEVWKKEQERLEVEKREMTEQCERLKLELSEAQqsaLRQ 366
Cdd:pfam12128 377 YNRrRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDdlQALESELREQLEAGKLEFNEEEYRLKSRLGELK---LRL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 367 SDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQ--KLQMCVQTLEKEKSLLSQEKEELqisl 444
Cdd:pfam12128 454 NQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQAseALRQASRRLEERQSALDELELQL---- 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 445 sklsseyevikstatrdldlFSQVHDLKHNLEAKEQELNQSIheNEILMAEL-------EELDKQNQEATKHVILIKDQL 517
Cdd:pfam12128 530 --------------------FPQAGTLLHFLRKEAPDWEQSI--GKVISPELlhrtdldPEVWDGSVGGELNLYGVKLDL 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 518 SKQQ--------SEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVD 589
Cdd:pfam12128 588 KRIDvpewaaseEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKD 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 590 QLSKSeknnfdiqkenheLREHIRQNEEELSTVRSELTQ--SQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHL 667
Cdd:pfam12128 668 KKNKA-------------LAERKDSANERLNSLEAQLKQldKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALL 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 668 EQVAFDLRTENEELLEAYEEvrnQLEESVAGnKQISLEKTAMLEWEKAPLETELCRAEKRvLEEERKYEQtvqelssacs 747
Cdd:pfam12128 735 KAAIAARRSGAKAELKALET---WYKRDLAS-LGVDPDVIAKLKREIRTLERKIERIAVR-RQEVLRYFD---------- 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 748 pdtsalqLEQERLIQLNQEKDFEIAELKKSIEQMdtdhkrtketlsssleeQKQLTQLINEKEICIVKLKEKSSELQKEL 827
Cdd:pfam12128 800 -------WYQETWLQRRPRLATQLSNIERAISEL-----------------QQQLARLIADTKLRRAKLEMERKASEKQQ 855
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 568978624 828 DKCAQTLRKNET---------LRQTIEEKDRSLGSMKEENNHLQEELERLREQ 871
Cdd:pfam12128 856 VRLSENLRGLRCemsklatlkEDANSEQAQGSIGERLAQLEDLKLKRDYLSES 908
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1541-1749 |
6.50e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 6.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1541 ERDQVML--ALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALA-AEDREAKLRKKVSVLEEKLV 1617
Cdd:COG4913 247 AREQIELlePIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELArLEAELERLEARLDALREELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1618 SSSNAMENASHQasvQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQmvlehfqqeekamysAELEKQNHL 1697
Cdd:COG4913 327 ELEAQIRGNGGD---RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA---------------EEFAALRAE 388
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568978624 1698 LAEWKKKAESLEGKvlsLQERLDEANAALdsaSRLTEQLDLKEEQIEELKKQ 1749
Cdd:COG4913 389 AAALLEALEEELEA---LEEALAEAEAAL---RDLRRELRELEAEIASLERR 434
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
553-831 |
7.36e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 47.61 E-value: 7.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 553 IKELTVQKEKLTHSEqALSDLQLTKQKLeDKVEDLVDQLSKSEKNNFDIQKENHElrEHIRQNEEELSTVRSELtqsqtq 632
Cdd:PRK05771 33 IEDLKEELSNERLRK-LRSLLTKLSEAL-DKLRSYLPKLNPLREEKKKVSVKSLE--ELIKDVEEELEKIEKEI------ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 633 gssrNVKDDLLKERETQVQNLKQNLSEVEQL------------NEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNK 700
Cdd:PRK05771 103 ----KELEEEISELENEIKELEQEIERLEPWgnfdldlslllgFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGY 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 701 qisleKTAMLEWEKapletelcRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEqERLIQLNQEKDFEIAELKKSIEQ 780
Cdd:PRK05771 179 -----VYVVVVVLK--------ELSDEVEEELKKLGFERLELEEEGTPSELIREIK-EELEEIEKERESLLEELKELAKK 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 568978624 781 MDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVK---LKEKSSELQKELDKCA 831
Cdd:PRK05771 245 YLEELLALYEYLEIELERAEALSKFLKTDKTFAIEgwvPEDRVKKLKELIDKAT 298
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
640-977 |
7.40e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 47.52 E-value: 7.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 640 DDLLKERETQVQNLKQNLSEVEQLNEhleqvafDLRTENEELLEAYEEVRNQLeesvagnkqisLEKTAMLEWEKAPLET 719
Cdd:PRK04778 111 ESLLDLIEEDIEQILEELQELLESEE-------KNREEVEQLKDLYRELRKSL-----------LANRFSFGPALDELEK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 720 ELcraekRVLEEERkyeQTVQELSSACSPDTSALQLEQ--ERLIQLNQ------------EKDF--EIAELKKSIEQM-- 781
Cdd:PRK04778 173 QL-----ENLEEEF---SQFVELTESGDYVEAREILDQleEELAALEQimeeipellkelQTELpdQLQELKAGYRELve 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 782 ---DTDHKRTKETLSSSLEEQKQLTQLINEKEIciVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGS----M 854
Cdd:PRK04778 245 egyHLDHLDIEKEIQDLKEQIDENLALLEELDL--DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDflehA 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 855 KEENNHLQEELERLreQQSRVVPAPEprtLDSTTELESELSQLhrikghlEEEIKHHQKMIEDQNQSKLQLLQSLQEQKK 934
Cdd:PRK04778 323 KEQNKELKEEIDRV--KQSYTLNESE---LESVRQLEKQLESL-------EKQYDEITERIAEQEIAYSELQEELEEILK 390
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 568978624 935 ELDEFKYQHEQMSISHTRlfLEKDEeiKNLQKTIEQIKAQLHE 977
Cdd:PRK04778 391 QLEEIEKEQEKLSEMLQG--LRKDE--LEAREKLERYRNKLHE 429
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
471-866 |
8.98e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.51 E-value: 8.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 471 LKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHvilikdqlskqqsegdsvIKKLKEELAGEKQRTHQLEDDKM 550
Cdd:pfam10174 287 MKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQH------------------IEVLKESLTAKEQRAAILQTEVD 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 551 NIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQ 630
Cdd:pfam10174 349 ALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQ 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 631 TQGSSRNVK----DDLLKERETQVQNLKQNLSEVEQlnEHLEQVAfDLRTENEELLEAYEEVRNQLEE------------ 694
Cdd:pfam10174 429 TDSSNTDTAlttlEEALSEKERIIERLKEQREREDR--ERLEELE-SLKKENKDLKEKVSALQPELTEkesslidlkeha 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 695 ---SVAGNKQISLEKTAMLEWEK-----APLETELCRAEKRVLEEERKYE-----QTVQELSSACSPDTSALQLEQERLI 761
Cdd:pfam10174 506 sslASSGLKKDSKLKSLEIAVEQkkeecSKLENQLKKAHNAEEAVRTNPEindriRLLEQEVARYKEESGKAQAEVERLL 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 762 QLNQE-------KDFEIAELKKSI-EQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKE-----LD 828
Cdd:pfam10174 586 GILREvenekndKDKKIAELESLTlRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEelmgaLE 665
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 568978624 829 KCAQTL----RKNETLRQTIEEKDRSLGSMK-EENNHLQEELE 866
Cdd:pfam10174 666 KTRQELdatkARLSSTQQSLAEKDGHLTNLRaERRKQLEEILE 708
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
797-1075 |
1.02e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 797 EEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVV 876
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 877 PAPEPRTLDStTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDefkyQHEQMSISHTRLFLE 956
Cdd:COG1196 302 QDIARLEERR-RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA----EAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 957 KDEEIKNLQKTIEQIKAQLHEERQDSQTENSdifQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNt 1036
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEE---AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA- 452
|
250 260 270
....*....|....*....|....*....|....*....
gi 568978624 1037 SLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARISSAS 1075
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
225-683 |
1.08e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 225 SQDLDDHQHELSALQNAHQQKLTEIS---RRHREELSDYEERIEELENLLQQGgsgvtvtdHSKVYEMQNTIQILQMEKV 301
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRvaaQAHNEEAESLREDADDLEERAEEL--------REEAAELESELEEAREAVE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 302 ESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQsalrqsdaaveeetilphss 381
Cdd:PRK02224 381 DRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARE-------------------- 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 382 SVAEVLRLQQALTDAENEimrlrslnQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQiSLSKLSSEYEVIKSTATRD 461
Cdd:PRK02224 441 RVEEAEALLEAGKCPECG--------QPVEGSPHVETIEEDRERVEELEAELEDLEEEVE-EVEERLERAEDLVEAEDRI 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 462 LDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEAtkhviliKDQLSKQQSEGDSV---IKKLKEELAGE 538
Cdd:PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEK-------REAAAEAEEEAEEAreeVAELNSKLAEL 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 539 KQRTHQLED--DKMNIIKELTVQKEKLTHSEQALSDLQ-LTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHE-LREHIRQ 614
Cdd:PRK02224 585 KERIESLERirTLLAAIADAEDEIERLREKREALAELNdERRERLAEKRERKRELEAEFDEARIEEAREDKErAEEYLEQ 664
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568978624 615 NEEELSTVRSELTQSQTQ-GSSRNVKDDL--LKERETQVQNLKQNL----SEVEQLNEHLEQVAFDLRTENEELLE 683
Cdd:PRK02224 665 VEEKLDELREERDDLQAEiGAVENELEELeeLRERREALENRVEALealyDEAEELESMYGDLRAELRQRNVETLE 740
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
475-907 |
1.19e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.48 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 475 LEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQ-----------------SEGDSVIKKLKEELAG 537
Cdd:pfam01576 7 MQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETelcaeaeemrarlaarkQELEEILHELESRLEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 538 EKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIrqnEE 617
Cdd:pfam01576 87 EEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERI---SE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 618 ELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQL----E 693
Cdd:pfam01576 164 FTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLakkeE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 694 ESVAGNKQISLEKTAMLEWEKAPLETELCRAE-KRVLEEERKYEQTVQELSSACSPDTSALQLEQERLI-------QLNQ 765
Cdd:pfam01576 244 ELQAALARLEEETAQKNNALKKIRELEAQISElQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLdttaaqqELRS 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 766 EKDFEIAELKKSIE-----------QMDTDHKRTKETLSSSLEEQKQLTQLINEKEiciVKLKEKSSELQKELDKCAQTL 834
Cdd:pfam01576 324 KREQEVTELKKALEeetrsheaqlqEMRQKHTQALEELTEQLEQAKRNKANLEKAK---QALESENAELQAELRTLQQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 835 RKNETLRQTIEEKDRSLGSMKEENNHLQEEL-ERLREQQSRV------VPAPEPRTLDSTTELESELSQLHRIKGHLEEE 907
Cdd:pfam01576 401 QDSEHKRKKLEGQLQELQARLSESERQRAELaEKLSKLQSELesvsslLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
402-708 |
1.36e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 47.38 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 402 RLRSLNQD---ISLAEDNQKLQmcvQTLEKEKSLLSQEKEELQIslsklssEYEVIKSTATRDLDLFSQVHDLKhnleaK 478
Cdd:COG5022 802 LLSLLGSRkeyRSYLACIIKLQ---KTIKREKKLRETEEVEFSL-------KAEVLIQKFGRSLKAKKRFSLLK-----K 866
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 479 EQELNQSIHENEILMAELEELDKQNQEATkhvilikdQLSKQQSEGDSVIKKLKEELAGEKQRTHQLeddKMNIIKELTV 558
Cdd:COG5022 867 ETIYLQSAQRVELAERQLQELKIDVKSIS--------SLKLVNLELESEIIELKKSLSSDLIENLEF---KTELIARLKK 935
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 559 QKEKLTHSEQalSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNV 638
Cdd:COG5022 936 LLNNIDLEEG--PSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQE 1013
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568978624 639 KDDLLKERETQVQNLKQNL-------SEVEQLNEhLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTA 708
Cdd:COG5022 1014 STKQLKELPVEVAELQSASkiissesTELSILKP-LQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLEST 1089
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
171-590 |
1.43e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 171 QQEINRLSNEVSRLESELGHWRH-IAQTKVQGAQSSDQTEICKLQNIIKELkQNRSQDLDDHQHELSALQnahqqkltei 249
Cdd:COG4717 94 QEELEELEEELEELEAELEELREeLEKLEKLLQLLPLYQELEALEAELAEL-PERLEELEERLEELRELE---------- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 250 srrhrEELSDYEERIEELENLLQQGGSGVTVTDHSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEhDQE 329
Cdd:COG4717 163 -----EELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLE-NEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 330 VWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAV----------------EEETILPHSSSVAEVLRLQQAL 393
Cdd:COG4717 237 EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflvlgllallflllaREKASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 394 TDAE-NEIMRLRSLNQDISLAEDNQKLQMcVQTLEKEKSLLSQEKEELQISLSKLSSEyEVIKSTATRDLDLFSQVHDLK 472
Cdd:COG4717 317 EEEElEELLAALGLPPDLSPEELLELLDR-IEELQELLREAEELEEELQLEELEQEIA-ALLAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 473 HNLEAKEQELNQSIHE-NEILMAELEELDKQNQEATKHVIlikDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDK-- 549
Cdd:COG4717 395 EEYQELKEELEELEEQlEELLGELEELLEALDEEELEEEL---EELEEELEELEEELEELREELAELEAELEQLEEDGel 471
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 568978624 550 MNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQ 590
Cdd:COG4717 472 AELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
411-857 |
1.49e-04 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 46.61 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 411 SLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHN---LEAKEQELNQSIH 487
Cdd:pfam05622 11 ELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGTPGGKKYLLLQKQLEQLQEEnfrLETARDDYRIKCE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 488 ENEILMAEL----EELDKQNQEAT--KHVILI----KDQLSKQQSEGDSVIKKLkEELAGEKQRTHQLEDDKMNIIKELT 557
Cdd:pfam05622 91 ELEKEVLELqhrnEELTSLAEEAQalKDEMDIlresSDKVKKLEATVETYKKKL-EDLGDLRRQVKLLEERNAEYMQRTL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 558 VQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHEL------REHIRQNEEELSTVRSELTQSQT 631
Cdd:pfam05622 170 QLEEELKKANALRGQLETYKRQVQELHGKLSEESKKADKLEFEYKKLEEKLealqkeKERLIIERDTLRETNEELRCAQL 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 632 QGSSRNVKDDLLKERETQVQNLKQNLSEVEqLNEHLEQvafdLRTENEELLEAYEEVRNQLEESVagnkQISLEKTamlE 711
Cdd:pfam05622 250 QQAELSQADALLSPSSDPGDNLAAEIMPAE-IREKLIR----LQHENKMLRLGQEGSYRERLTEL----QQLLEDA---N 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 712 WEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEiAELKKSIEQMDTdhkRTKET 791
Cdd:pfam05622 318 RRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAEDSSLLKQKLEEHLEKLHEAQ-SELQKKKEQIEE---LEPKQ 393
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568978624 792 LSSSLEEQKQLTQLINEKEICIVKLK-------EKSSELQKELDKCAQTLRKNE--TLRQTIEEKDRSLGSMKEE 857
Cdd:pfam05622 394 DSNLAQKIDELQEALRKKDEDMKAMEerykkyvEKAKSVIKTLDPKQNPASPPEiqALKNQLLEKDKKIEHLERD 468
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
640-1224 |
1.52e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 640 DDLLKEREtqvQNLKQNLSEVEQLNEHLEQVAFDLRtENEELLEAYEEVRNQLEESvagNKQISLEKTAMLEWEKAPLET 719
Cdd:PRK03918 192 EELIKEKE---KELEEVLREINEISSELPELREELE-KLEKEVKELEELKEEIEEL---EKELESLEGSKRKLEEKIREL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 720 ELCRAEKRvlEEERKYEQTVQELSSacspdtsalqleqerlIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQ 799
Cdd:PRK03918 265 EERIEELK--KEIEELEEKVKELKE----------------LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 800 KQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRslgSMKEENNHLQEELERLREQQSRvvpap 879
Cdd:PRK03918 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER---LKKRLTGLTPEKLEKELEELEK----- 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 880 eprtldSTTELESELSQLHRIKGHLEEEIKHHQKMIEDqnqsKLQLLQSLQEQKKELDEfkyQHEQmsishtRLFLEKDE 959
Cdd:PRK03918 399 ------AKEEIEEEISKITARIGELKKEIKELKKAIEE----LKKAKGKCPVCGRELTE---EHRK------ELLEEYTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 960 EIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSL--------SIEHGSEKHDLSKAETE-RLVKGIKERELEIKl 1030
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLkelaeqlkELEEKLKKYNLEELEKKaEEYEKLKEKLIKLK- 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1031 lnEKNTSLTKQIDQLS--KDEVGKLTQIIQQKDLEIQALHARISSASYS--QDVVYLQQQLHAYAMEREKVMVILNEKTR 1106
Cdd:PRK03918 539 --GEIKSLKKELEKLEelKKKLAELEKKLDELEEELAELLKELEELGFEsvEELEERLKELEPFYNEYLELKDAEKELER 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1107 ENSQLKTEYHKvidiISAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTLltvlqts 1186
Cdd:PRK03918 617 EEKELKKLEEE----LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEEL------- 685
|
570 580 590
....*....|....*....|....*....|....*...
gi 568978624 1187 gtgseaggvnSNQFEELLQERDKLKQQVKKMEEWKQQV 1224
Cdd:PRK03918 686 ----------EKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
541-1226 |
1.59e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 541 RTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQkledkveDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELS 620
Cdd:pfam12128 228 RDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHF-------GYKSDETLIASRQEERQETSAELNQLLRTLDDQWK 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 621 TVRSELTQ--SQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELlEAYEEVRNQLEESVAG 698
Cdd:pfam12128 301 EKRDELNGelSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERL-KALTGKHQDVTAKYNR 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 699 NKQ-ISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIA----- 772
Cdd:pfam12128 380 RRSkIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNqatat 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 773 -ELKKSIEQMDTDHKRTKETLSSSLEE----QKQLTQL----------INEKEICIVKLKEKSSELQKELDKCAQTLRkn 837
Cdd:pfam12128 460 pELLLQLENFDERIERAREEQEAANAEverlQSELRQArkrrdqaseaLRQASRRLEERQSALDELELQLFPQAGTLL-- 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 838 ETLRQTIEEKDRSLGSMKEENNHLQEELE-----------------RLREQQSRVvpapePRTLDSTTELESELSQLhri 900
Cdd:pfam12128 538 HFLRKEAPDWEQSIGKVISPELLHRTDLDpevwdgsvggelnlygvKLDLKRIDV-----PEWAASEEELRERLDKA--- 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 901 kghlEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQ 980
Cdd:pfam12128 610 ----EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLN 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 981 DSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKEREL-----EIKLLNEKNTSLTKQIDQLSKDEVGKL-- 1053
Cdd:pfam12128 686 SLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLallkaAIAARRSGAKAELKALETWYKRDLASLgv 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1054 -TQIIQQKDLEIQALHARISSASYSQDVV--YLQQQLHAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALI 1130
Cdd:pfam12128 766 dPDVIAKLKREIRTLERKIERIAVRRQEVlrYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLE 845
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1131 KLQDENKKMSTRfessgqdmfketiqnLSRIIREKDIEIDALSQkcqtlLTVLQTSGTGSEAGGVNSNQFEELLQERDKL 1210
Cdd:pfam12128 846 MERKASEKQQVR---------------LSENLRGLRCEMSKLAT-----LKEDANSEQAQGSIGERLAQLEDLKLKRDYL 905
|
730
....*....|....*.
gi 568978624 1211 KQQVKKMEEWKQQVMT 1226
Cdd:pfam12128 906 SESVKKYVEHFKNVIA 921
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1211-1764 |
2.12e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1211 KQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHS 1290
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1291 IGQLCNTKDLLLGKLDIM---SPQLSSGSSLTSQAAEPLRASQSS----------EPHESSQLLQQEVDDLRKSLQEKDA 1357
Cdd:TIGR02169 394 LEKLKREINELKRELDRLqeeLQRLSEELADLNAAIAGIEAKINEleeekedkalEIKKQEWKLEQLAADLSKYEQELYD 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1358 TIRTLQENNHRLSDsvaASSEVERKEHEQADSEIKQLKEKQEVLqnLLKEKDLLIKAKSDQLHSSNEN------------ 1425
Cdd:TIGR02169 474 LKEEYDRVEKELSK---LQRELAEAEAQARASEERVRGGRAVEE--VLKASIQGVHGTVAQLGSVGERyataievaagnr 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1426 LANKVNENELL-RQAVTNLKERIL--------------ILEMDISKLKGENEKIVDA----SKGKETEYQALQETNM--- 1483
Cdd:TIGR02169 549 LNNVVVEDDAVaKEAIELLKRRKAgratflplnkmrdeRRDLSILSEDGVIGFAVDLvefdPKYEPAFKYVFGDTLVved 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1484 ---------KFSMMLREKE-FE-------CHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVM 1546
Cdd:TIGR02169 629 ieaarrlmgKYRMVTLEGElFEksgamtgGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELS 708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1547 LALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEdshtREALAAEDREAKLRKKVSVLEEKLVSSSNAMEN- 1625
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE----QEIENVKSELKELEARIEELEEDLHKLEEALNDl 784
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1626 ASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQ------QEEKAMYSAELEKQNHLLA 1699
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQeqridlKEQIKSIEKEIENLNGKKE 864
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568978624 1700 EWKKKAESLEGKVLSLQERLDEANAALDsasRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKL 1764
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKERD---ELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
777-1727 |
2.35e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.50 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 777 SIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRslgsmkE 856
Cdd:pfam02463 163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLN------E 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 857 ENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSlqeqkKEL 936
Cdd:pfam02463 237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERR-----KVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 937 DEFKYQHEQMSIShtrlflEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETER 1016
Cdd:pfam02463 312 DEEKLKESEKEKK------KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1017 LVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEvgkltqiIQQKDLEIQALHARISSASYSQDVVYLQQQLHAYAMEREK 1096
Cdd:pfam02463 386 LSSAAKLKEEELELKSEEEKEAQLLLELARQLE-------DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQEL 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1097 VMVILNEKTRENSQLKTEYHKVIDIISAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIrekdieidalsQKC 1176
Cdd:pfam02463 459 KLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRI-----------ISA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1177 QTLLTVLQTSGTGSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNN 1256
Cdd:pfam02463 528 HGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQ 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1257 SKLQVDYTGLIQS-------YEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRAS 1329
Cdd:pfam02463 608 LDKATLEADEDDKrakvvegILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAES 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1330 QSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEKD 1409
Cdd:pfam02463 688 ELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKS 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1410 LLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQETNMKFSMML 1489
Cdd:pfam02463 768 ELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1490 REKEFECHSMREKALAFEQLLKEKEQGKAGELNQ--LLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLR 1567
Cdd:pfam02463 848 LEKLAEEELERLEEEITKEELLQELLLKEEELEEqkLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA 927
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1568 DKESRLNQELQRLRDHLLESEDshtreaLAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQ 1647
Cdd:pfam02463 928 EILLKYEEEPEELLLEEADEKE------KEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLE 1001
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1648 RDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMY---SAELEKQN-------------HLLAEWKKKAESLEGK 1711
Cdd:pfam02463 1002 EEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLElggSAELRLEDpddpfsggieisaRPPGKGVKNLDLLSGG 1081
|
970 980 990
....*....|....*....|....*....|..
gi 568978624 1712 ---------VLSLQER-------LDEANAALD 1727
Cdd:pfam02463 1082 ektlvalalIFAIQKYkpapfylLDEIDAALD 1113
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1511-1774 |
2.48e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.43 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1511 KEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQ-----RLRDHLL 1585
Cdd:PLN02939 120 KDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKlaaqeKIHVEIL 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1586 ESEDSHTREALAAE-----DREAKLRKKVSVLEEKLVSSSNAMEnASHQASVQVESLQEQLNMVSKQRD--ETALQ---- 1654
Cdd:PLN02939 200 EEQLEKLRNELLIRgategLCVHSLSKELDVLKEENMLLKDDIQ-FLKAELIEVAETEERVFKLEKERSllDASLReles 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1655 -LSVSQEQV------KQYAL--SLANLQMVLEhfQQEEKAMYSAELEKQNHllaewkkkaeSLEGKVLSLQERLDEANAA 1725
Cdd:PLN02939 279 kFIVAQEDVsklsplQYDCWweKVENLQDLLD--RATNQVEKAALVLDQNQ----------DLRDKVDKLEASLKEANVS 346
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 568978624 1726 LDSASR---LTEQLDLKEEQI----EELKKQNELHQEMLDDAQKKLMSLVNSTEGK 1774
Cdd:PLN02939 347 KFSSYKvelLQQKLKLLEERLqasdHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
541-1260 |
2.51e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 541 RTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELS 620
Cdd:pfam02463 200 LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 621 TVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNK 700
Cdd:pfam02463 280 EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 701 QISLEKTAMLEWEKApLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQ 780
Cdd:pfam02463 360 ELEKLQEKLEQLEEE-LLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEES 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 781 MDTDhKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNH 860
Cdd:pfam02463 439 IELK-QGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIK 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 861 LQEELERLREQQSRVVPAP--EPRTLDSTTELESELSQLHRIKGHLEE-----------EIKHHQKMIEDQNQSKLQLLQ 927
Cdd:pfam02463 518 DGVGGRIISAHGRLGDLGVavENYKVAISTAVIVEVSATADEVEERQKlvraltelplgARKLRLLIPKLKLPLKSIAVL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 928 SLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKH 1007
Cdd:pfam02463 598 EIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLE 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1008 DLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARISSASYSQDVVYLQQQL 1087
Cdd:pfam02463 678 IQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRL 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1088 HAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALIKlqDENKKMSTRFESSGQDMFKETIQNLSRIIREKDI 1167
Cdd:pfam02463 758 KKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE--ELRALEEELKEEAELLEEEQLLIEQEEKIKEEEL 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1168 EIDALsqkcqtLLTVLQTSGTGSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQA 1247
Cdd:pfam02463 836 EELAL------ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKL 909
|
730
....*....|...
gi 568978624 1248 QVSVDSDNNSKLQ 1260
Cdd:pfam02463 910 NLLEEKENEIEER 922
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1631-1763 |
2.57e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 45.34 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1631 SVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLehfqqeekAMYSAELEKQNHLLAEWKKKAESLEG 1710
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASL--------SAAEAERSRLQALLAELAGAGAAAEG 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 568978624 1711 KVLSLQERLDEANAALDSASRlteQLDLKEEQIEELKKQNELHQEMLDDAQKK 1763
Cdd:PRK09039 117 RAGELAQELDSEKQVSARALA---QVELLNQQIAALRRQLAALEAALDASEKR 166
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1521-1756 |
3.37e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1521 LNQLLNAVKSMQEKTVTFQQERdqvmlaLKQKQMETSTLQNEVQRLRDK------ESRLNQELQRLRDhlLESEdshtre 1594
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQ------LPELRKELEEAEAALEEFRQKnglvdlSEEAKLLLQQLSE--LESQ------ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1595 ALAAEDREAKLRKKVSVLEEKLVSSSNAMENAShqASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQM 1674
Cdd:COG3206 228 LAEARAELAEAEARLAALRAQLGSGPDALPELL--QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1675 VLehfqQEEKAMYSAELEKQnhlLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEE-LKKQNELH 1753
Cdd:COG3206 306 QL----QQEAQRILASLEAE---LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESlLQRLEEAR 378
|
...
gi 568978624 1754 QEM 1756
Cdd:COG3206 379 LAE 381
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
364-1064 |
3.69e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 3.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 364 LRQSDAAVEEETILPhsssvaEVLRLQQALTDAENEIMRLRSLNQDIslaednQKLQMCVQTLEKEKSLLSQEKEELQIS 443
Cdd:pfam12128 227 IRDIQAIAGIMKIRP------EFTKLQQEFNTLESAELRLSHLHFGY------KSDETLIASRQEERQETSAELNQLLRT 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 444 LSKlsseyEVIKSTATRDLDLFSQVHDLK---HNLEAKEQELNQSIHEN-EILMAELEELDKQNQEATKHVILIKDQLSK 519
Cdd:pfam12128 295 LDD-----QWKEKRDELNGELSAADAAVAkdrSELEALEDQHGAFLDADiETAAADQEQLPSWQSELENLEERLKALTGK 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 520 QQS---EGDSVIKKLKEELAGEKQRTHQ-LEDDKMNIIKELTVQKEKLTHSEQALSDlQLTKQKLEDKVEDLVDQLSKSE 595
Cdd:pfam12128 370 HQDvtaKYNRRRSKIKEQNNRDIAGIKDkLAKIREARDRQLAVAEDDLQALESELRE-QLEAGKLEFNEEEYRLKSRLGE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 596 -KNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSrnVKDDLL---KERETQVQNLKQNLSEVEQLNEHLEQVA 671
Cdd:pfam12128 449 lKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVER--LQSELRqarKRRDQASEALRQASRRLEERQSALDELE 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 672 FDLRTENEELLEAYEEVRNQLEESVAgnKQISLEktamlewekapletELCRAEkrvLEEERKYEQTVQELSsacspdTS 751
Cdd:pfam12128 527 LQLFPQAGTLLHFLRKEAPDWEQSIG--KVISPE--------------LLHRTD---LDPEVWDGSVGGELN------LY 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 752 ALQLEQERL-----IQLNQEKDFEIAELKKSIEQMDTDHKRTKETLS--------SSLEEQKQLTQLINEKEicivKLKE 818
Cdd:pfam12128 582 GVKLDLKRIdvpewAASEEELRERLDKAEEALQSAREKQAAAEEQLVqangelekASREETFARTALKNARL----DLRR 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 819 KSSELQKELDKCAQTLRknETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLH 898
Cdd:pfam12128 658 LFDEKQSEKDKKNKALA--ERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLK 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 899 RIKGHLEEEIKHHQKMIEDQNQsklqllqslqeqkKELDEFKYQHEQMSishtrlflEKDEEIKNLQKTIEQIKAQLHE- 977
Cdd:pfam12128 736 AAIAARRSGAKAELKALETWYK-------------RDLASLGVDPDVIA--------KLKREIRTLERKIERIAVRRQEv 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 978 -------------ERQDSQTENSDIfqETKVQSLSIEHGSEkhdlsKAETERLVKGI-KERELEIKLLNEKNTSLTKQID 1043
Cdd:pfam12128 795 lryfdwyqetwlqRRPRLATQLSNI--ERAISELQQQLARL-----IADTKLRRAKLeMERKASEKQQVRLSENLRGLRC 867
|
730 740
....*....|....*....|.
gi 568978624 1044 QLSKDEVGKLTQIIQQKDLEI 1064
Cdd:pfam12128 868 EMSKLATLKEDANSEQAQGSI 888
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1381-1648 |
4.07e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1381 RKEHEQADSEI---KQLKEKQEVLQNLLkEKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERIlilEMDISKL 1457
Cdd:pfam17380 302 RQEKEEKAREVerrRKLEEAEKARQAEM-DRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEI---AMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1458 KgENEKIVDASKGKETEYQALQETNMKFSMMLREKEfecHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVT 1537
Cdd:pfam17380 378 R-ELERLQMERQQKNERVRQELEAARKVKILEEERQ---RKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1538 FQQERDQVMLALKQKQMEtstlQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLV 1617
Cdd:pfam17380 454 EEQERQQQVERLRQQEEE----RKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAI 529
|
250 260 270
....*....|....*....|....*....|....*.
gi 568978624 1618 SSSNAMENASHQASVQVE-----SLQEQLNMVSKQR 1648
Cdd:pfam17380 530 YEEERRREAEEERRKQQEmeerrRIQEQMRKATEER 565
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
752-1071 |
4.68e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 752 ALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLsssLEEQKQLTQLINEKEIcivkLKEKSSELQKELDKCA 831
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL---EELELELEEAQAEEYE----LLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 832 QTLRKnetLRQTIEEKDRSLGSMKEENNHLQEELERLREQQsrvvpapeprtldstTELESELSQLHRIKGHLEEEIKHH 911
Cdd:COG1196 309 ERRRE---LEERLEELEEELAELEEELEELEEELEELEEEL---------------EEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 912 QKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQ 991
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 992 ETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARI 1071
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1380-1761 |
4.87e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.89 E-value: 4.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1380 ERKEHEQADSEIKQLKEKQEVLQNLLKE-----KDLLIKAKSDQLHSSNENLANKVNENELLRQaVTNLKERILILEMDI 1454
Cdd:pfam07888 11 EESHGEEGGTDMLLVVPRAELLQNRLEEclqerAELLQAQEAANRQREKEKERYKRDREQWERQ-RRELESRVAELKEEL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1455 SKLKGENEKIVDASKGKETEYQALQEtnmKFSMMLREKEFECHSMREKALAFeQLLKEKEQGKAGELNQLLNAVKSMQEK 1534
Cdd:pfam07888 90 RQSREKHEELEEKYKELSASSEELSE---EKDALLAQRAAHEARIRELEEDI-KTLTQRVLERETELERMKERAKKAGAQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1535 TVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTrEALAAEDREAKLRKKVSVLEE 1614
Cdd:pfam07888 166 RKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLT-TAHRKEAENEALLEELRSLQE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1615 KLVSSSNAmenashqasvqVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLE----HFQQEEKAMY-SA 1689
Cdd:pfam07888 245 RLNASERK-----------VEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALRegraRWAQERETLQqSA 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1690 ELEKQN--HLLAEWKKKAESLEG--------KVLSLQER-------------LDEANAALDSASRLTEQLDLKEEQIEEL 1746
Cdd:pfam07888 314 EADKDRieKLSAELQRLEERLQEermereklEVELGREKdcnrvqlsesrreLQELKASLRVAQKEKEQLQAEKQELLEY 393
|
410
....*....|....*
gi 568978624 1747 KKQNELHQEMLDDAQ 1761
Cdd:pfam07888 394 IRQLEQRLETVADAK 408
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
284-870 |
4.91e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.28 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 284 SKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCE---RLKLELSEAq 360
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDmknRYESEIKTA- 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 361 qsalrQSDAAVEEETILPHSSSVAEVLRLQQ-ALTDAENEIMRLRSLNQDIslaEDNQKLqmcvqtLEKEKSLLsQEKEE 439
Cdd:PRK01156 262 -----ESDLSMELEKNNYYKELEERHMKIINdPVYKNRNYINDYFKYKNDI---ENKKQI------LSNIDAEI-NKYHA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 440 LQISLSKLSSEYEVIKSTATRDLDLFSQVHDLK-----HNLEAKEQE-LNQSIHENEIlmaELEELDKQNQEATKHVILI 513
Cdd:PRK01156 327 IIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEgyemdYNSYLKSIEsLKKKIEEYSK---NIERMSAFISEILKIQEID 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 514 KDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKeklTHSEQALSDLQLTKQKLEDKVEDLVDQLSK 593
Cdd:PRK01156 404 PDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN---GQSVCPVCGTTLGEEKSNHIINHYNEKKSR 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 594 SEKNNFDIQKENHELREHIRQNEEELSTV------RSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHL 667
Cdd:PRK01156 481 LEEKIREIEIEVKDIDEKIVDLKKRKEYLeseeinKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKL 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 668 EqvafDLRTENEELLEA--------YEEVRNQLEESvagNKQIS--LEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQ 737
Cdd:PRK01156 561 E----DLDSKRTSWLNAlavislidIETNRSRSNEI---KKQLNdlESRLQEIEIGFPDDKSYIDKSIREIENEANNLNN 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 738 TVQELSsacspdtsalqlEQERLIQLNQEKdfeIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLK 817
Cdd:PRK01156 634 KYNEIQ------------ENKILIEKLRGK---IDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRA 698
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 568978624 818 EKSSELQkeldkcaQTLRKNETLRQTIEEKDRSLGSMKEENNHLQeELERLRE 870
Cdd:PRK01156 699 RLESTIE-------ILRTRINELSDRINDINETLESMKKIKKAIG-DLKRLRE 743
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1552-1767 |
5.02e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 5.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1552 KQMETSTLQNE-VQRLRDKESRLNQ--------ELQRLRDHLLESEDshtrEALAAEDREAKLRKKVSVLEEKLvsssNA 1622
Cdd:TIGR02168 200 RQLKSLERQAEkAERYKELKAELRElelallvlRLEELREELEELQE----ELKEAEEELEELTAELQELEEKL----EE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1623 MENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEekamysaeLEKQNHLLAEWK 1702
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK--------LDELAEELAELE 343
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568978624 1703 KKAESLEGKVLSLQERLDEANAALDSasrLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSL 1767
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1373-1610 |
5.05e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 5.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1373 VAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEM 1452
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1453 DISKLKGENEKIVDASKGKETEYQALQETNmKFSMMLREKEFechsmrEKALAFEQLLKEKEQGKAGELNQLLNAVKSMQ 1532
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQP-PLALLLSPEDF------LDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1533 EKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLR---DHLLESEDSHTREALAAEDREAKLRKKV 1609
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAaelAELQQEAEELEALIARLEAEAAAAAERT 243
|
.
gi 568978624 1610 S 1610
Cdd:COG4942 244 P 244
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
730-1040 |
5.33e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.07 E-value: 5.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 730 EEERKYEQTVQELSsacspdtsaLQLEQERLIQLNQEKDFEI--AELKKSIEQMDTDHKRTKETLSSSLEEQKQltqlin 807
Cdd:COG5022 810 KEYRSYLACIIKLQ---------KTIKREKKLRETEEVEFSLkaEVLIQKFGRSLKAKKRFSLLKKETIYLQSA------ 874
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 808 ekeICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSL-GSMKEENNHLQEELERL----REQQSRVVPAPEPR 882
Cdd:COG5022 875 ---QRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLsSDLIENLEFKTELIARLkkllNNIDLEEGPSIEYV 951
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 883 TLDSTTELESELSQLHRIKGHLEEEIKHHQKMIED---QNQSKLQLLQSLQEQKKELDEFKYQHEQMSI-SHTRLFLEKD 958
Cdd:COG5022 952 KLPELNKLHEVESKLKETSEEYEDLLKKSTILVREgnkANSELKNFKKELAELSKQYGALQESTKQLKElPVEVAELQSA 1031
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 959 EEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGsekHDLSKAETERLVKGIKERELEIKLLNEKNTSL 1038
Cdd:COG5022 1032 SKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENS---LLDDKQLYQLESTENLLKTINVKDLEVTNRNL 1108
|
..
gi 568978624 1039 TK 1040
Cdd:COG5022 1109 VK 1110
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1560-1727 |
5.43e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 5.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1560 QNEVQRLRDKESRLNQELQRLRDHLLESEDSHT---REALAAEDREAKLRKKVSVLEEKLVSSSNAM--ENASHQASVQV 1634
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVemaRELAELNEAESDLEQDYQAASDHLNLVQTALrqQEKIERYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1635 ESLQEQL---NMVSK----QRDETALQLSVSQEQVKQYALSLANLQMVLE-------HFQQEEKAMYSAE---------L 1691
Cdd:PRK04863 358 EELEERLeeqNEVVEeadeQQEENEARAEAAEEEVDELKSQLADYQQALDvqqtraiQYQQAVQALERAKqlcglpdltA 437
|
170 180 190
....*....|....*....|....*....|....*.
gi 568978624 1692 EKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALD 1727
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHS 473
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
533-734 |
5.56e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 5.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 533 EELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHI 612
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 613 RQNEEELSTVRSELTQSQTQG------SSRNVKD---------DLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTE 677
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPplalllSPEDFLDavrrlqylkYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568978624 678 NEEL------LEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERK 734
Cdd:COG4942 180 LAELeeeraaLEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
475-709 |
5.78e-04 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 45.15 E-value: 5.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 475 LEAKEQELNQSIHENEILMAELEElDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIK 554
Cdd:pfam18971 612 VKKAQKDLEKSLRKREHLEKEVEK-KLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSD 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 555 ELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNnFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGS 634
Cdd:pfam18971 691 KLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKD-LGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAK 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 635 S---RNVKDDLLKERET-QVQNLKQNLSEVEQLNE--HLEQVAFDLRTENEELL----------------EAYEEVRNQL 692
Cdd:pfam18971 770 SdleNSVKDVIINQKVTdKVDNLNQAVSVAKAMGDfsRVEQVLADLKNFSKEQLaqqaqknedfntgknsELYQSVKNSV 849
|
250
....*....|....*..
gi 568978624 693 EESVAGNKQISLEKTAM 709
Cdd:pfam18971 850 NKTLVGNGLSGIEATAL 866
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
23-670 |
6.27e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.89 E-value: 6.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 23 LASLTGQISN--FTKDMLLEGTEDVPDFpNSGREENEATHSVLRSENERLKKLYtdleekheaselqikqqsssyrsqlQ 100
Cdd:PRK01156 175 IDMLRAEISNidYLEEKLKSSNLELENI-KKQIADDEKSHSITLKEIERLSIEY-------------------------N 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 101 QKEEEINHLKA---RQLALQDELLRLQSAAQSAHlgsgsapaasasssfsygvshrvSAFHEDDMDFGDVISSQQEINRL 177
Cdd:PRK01156 229 NAMDDYNNLKSalnELSSLEDMKNRYESEIKTAE-----------------------SDLSMELEKNNYYKELEERHMKI 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 178 SNE--VSRLESELGHWRHIAQtkvqgaqssdqteICKLQNIIKELKqNRSQDLDDHQHELSALQNAHQQKLTEISRRhre 255
Cdd:PRK01156 286 INDpvYKNRNYINDYFKYKND-------------IENKKQILSNID-AEINKYHAIIKKLSVLQKDYNDYIKKKSRY--- 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 256 elSDYEERIEELEnllqqggsgvtvTDHSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRlssAEHDQEVWKKEQ 335
Cdd:PRK01156 349 --DDLNNQILELE------------GYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKI---QEIDPDAIKKEL 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 336 ERLEVEKREMTEQCERLklelsEAQQSALRQSDAAVEEETILPHSSSVAEVLrlqqALTDAENEIMRLRSlnqdiSLAED 415
Cdd:PRK01156 412 NEINVKLQDISSKVSSL-----NQRIRALRENLDELSRNMEMLNGQSVCPVC----GTTLGEEKSNHIIN-----HYNEK 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 416 NQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEyEVIKSTATRDL--DLFSQVHDLKHNL-EAKEQELNQSIHENEIL 492
Cdd:PRK01156 478 KSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESE-EINKSINEYNKieSARADLEDIKIKInELKDKHDKYEEIKNRYK 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 493 MAELEELDKQNQEATKHVILIKD-QLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKM---NIIKELTVQKEKLTHSEQ 568
Cdd:PRK01156 557 SLKLEDLDSKRTSWLNALAVISLiDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSyidKSIREIENEANNLNNKYN 636
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 569 ALSDLQLTKQKLEDKVEDLVDQLSKSEknnfDIQKENHELREHIRQNEEELSTVRSELtqsQTQGSSRNVKDDLLKERET 648
Cdd:PRK01156 637 EIQENKILIEKLRGKIDNYKKQIAEID----SIIPDLKEITSRINDIEDNLKKSRKAL---DDAKANRARLESTIEILRT 709
|
650 660
....*....|....*....|..
gi 568978624 649 QVQNLKQNLSEVEQLNEHLEQV 670
Cdd:PRK01156 710 RINELSDRINDINETLESMKKI 731
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
471-918 |
7.02e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 7.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 471 LKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKM 550
Cdd:pfam05483 224 IQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKM 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 551 NIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELT--- 627
Cdd:pfam05483 304 SLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKiit 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 628 -QSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQL---NEHLEQVAFDLRTENEEL---LEAYEEVRNQLEESVAGNK 700
Cdd:pfam05483 384 mELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLldeKKQFEKIAEELKGKEQELiflLQAREKEIHDLEIQLTAIK 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 701 QISLEKTAMLEWEKAPLETELCRAekrvleeerkyeqtvQELSSACSpdtsALQLEQERLIQlnqEKDFEIAELKKSIEQ 780
Cdd:pfam05483 464 TSEEHYLKEVEDLKTELEKEKLKN---------------IELTAHCD----KLLLENKELTQ---EASDMTLELKKHQED 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 781 MDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLR-------KNETLRQTIEEKDRSLGS 853
Cdd:pfam05483 522 IINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARsieyevlKKEKQMKILENKCNNLKK 601
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568978624 854 MKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQ 918
Cdd:pfam05483 602 QIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDK 666
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1328-1778 |
7.84e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 7.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1328 ASQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAAS---SEVERKEHEQADSEIKQLKEKQEVLQNL 1404
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAeekAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1405 --LKEKDLLIKAKSDQLHSSN------ENLANKVNENELLRQAVTNLKERiliLEMDISKLKGENEKIVDASKGKETEYQ 1476
Cdd:PTZ00121 1394 deAKKKAEEDKKKADELKKAAaakkkaDEAKKKAEEKKKADEAKKKAEEA---KKADEAKKKAEEAKKAEEAKKKAEEAK 1470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1477 ALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMET 1556
Cdd:PTZ00121 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1557 STLQNEVQRLRDK---------ESRLNQELQRlRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENAS 1627
Cdd:PTZ00121 1551 LKKAEELKKAEEKkkaeeakkaEEDKNMALRK-AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1628 hqasvQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNHLL--AEWKKKA 1705
Cdd:PTZ00121 1630 -----EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKA 1704
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568978624 1706 ESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEqiEELKKQNELHQEmlDDAQKKLMSLVNSTEGKVDKV 1778
Cdd:PTZ00121 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE--EDKKKAEEAKKD--EEEKKKIAHLKKEEEKKAEEI 1773
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
170-474 |
8.24e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 8.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 170 SQQEINRLSNEVSRLESElghwrhIAQTKVQGAQSSDQTEIC--KLQNIIKELKQNRSqDLDDHQHELSALQ-------- 239
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQE------EEKLKERLEELEEDLSSLeqEIENVKSELKELEA-RIEELEEDLHKLEealndlea 786
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 240 ----------NAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTvTDHSKVYEMQNTIQILQMEKVESTKQIED 309
Cdd:TIGR02169 787 rlshsripeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ-ELQEQRIDLKEQIKSIEKEIENLNGKKEE 865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 310 LENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQsdaaveEETILPHSSSVAEVLRL 389
Cdd:TIGR02169 866 LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL------KAKLEALEEELSEIEDP 939
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 390 QQALTDAENEIMRLRSLNQDIslaednQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVH 469
Cdd:TIGR02169 940 KGEDEEIPEEELSLEDVQAEL------QRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013
|
....*
gi 568978624 470 DLKHN 474
Cdd:TIGR02169 1014 KKKRE 1018
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
397-846 |
8.39e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 8.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 397 ENEIMRLRSLNQDISLAEDNQKLqmcVQTLEKEKSLLSQEKEELQISLSKLSSEYevikstatRDLDLFSQVHDLKHNLE 476
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEE---YAELQEELEELEEELEELEAELEELREEL--------EKLEKLLQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 477 AKEQELNQSIHENEILMAELEELDkqnqeatkhvilikdQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMN-IIKE 555
Cdd:COG4717 136 ALEAELAELPERLEELEERLEELR---------------ELEEELEELEAELAELQEELEELLEQLSLATEEELQdLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 556 LTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNN---------------FDIQKENHELREHIRqNEEELS 620
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEErlkearlllliaaalLALLGLGGSLLSLIL-TIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 621 TVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEvEQLNEHLEQVAFDLRTENEELLEAY---EEVRNQLEESVA 697
Cdd:COG4717 280 FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEE-EELEELLAALGLPPDLSPEELLELLdriEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 698 GNKQISL-----EKTAMLEWEKAPLETELcraeKRVLEEERKYEQTVQELSSAcspdtsALQLEQERLIQLNQEKDFEIA 772
Cdd:COG4717 359 LEEELQLeeleqEIAALLAEAGVEDEEEL----RAALEQAEEYQELKEELEEL------EEQLEELLGELEELLEALDEE 428
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568978624 773 ELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLIN--EKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEE 846
Cdd:COG4717 429 ELEEELEELEEELEELEEELEELREELAELEAELEqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEE 504
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
396-1049 |
9.36e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 9.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 396 AENEIMRLRSLNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLK--H 473
Cdd:TIGR00618 194 GKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEelR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 474 NLEAKEQELNQSIHEN---EILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRT--HQLEDD 548
Cdd:TIGR00618 274 AQEAVLEETQERINRArkaAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRllQTLHSQ 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 549 KMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKvEDLVDQLSKSEKNNFDIQKENHE-LREHIRQNEEELSTVRSELT 627
Cdd:TIGR00618 354 EIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQK-TTLTQKLQSLCKELDILQREQATiDTRTSAFRDLQGQLAHAKKQ 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 628 QSQTQGSSRNVKD------DLLKERETQVQNLKQNLSEVEQLNEHLEQVAfdLRTENEELLEAYEEVRNQLEESVAGNKQ 701
Cdd:TIGR00618 433 QELQQRYAELCAAaitctaQCEKLEKIHLQESAQSLKEREQQLQTKEQIH--LQETRKKAVVLARLLELQEEPCPLCGSC 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 702 ISLEKTAMLEWEKAPLETELCRAEKRVL---EEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQ---------EKDF 769
Cdd:TIGR00618 511 IHPNPARQDIDNPGPLTRRMQRGEQTYAqleTSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQcdnrskediPNLQ 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 770 EIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKeicIVKLKEKSSELQKELDKCAQTLRknETLRQTIEEKDR 849
Cdd:TIGR00618 591 NITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDV---RLHLQQCSQELALKLTALHALQL--TLTQERVREHAL 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 850 SLGSMKEENNHLQEELERLREQQSRVVPAPEPrtldsttELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSL 929
Cdd:TIGR00618 666 SIRVLPKELLASRQLALQKMQSEKEQLTYWKE-------MLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARE 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 930 QEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIkAQLHEERQDSQTENSDIFQETKvqSLSIEHGSEKHDL 1009
Cdd:TIGR00618 739 DALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAEL-SHLAAEIQFFNRLREEDTHLLK--TLEAEIGQEIPSD 815
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 568978624 1010 SKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDE 1049
Cdd:TIGR00618 816 EDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYE 855
|
|
| GRAB |
pfam10375 |
GRAB domain; The GRAB (GRIP-related Arf-binding) domain is towards the C-terminus of Rud3 type ... |
1770-1815 |
1.01e-03 |
|
GRAB domain; The GRAB (GRIP-related Arf-binding) domain is towards the C-terminus of Rud3 type proteins. This domain is related to the GRIP domain, but the conserved tyrosine residue found at position 4 in all GRIP domains is replaced by a leucine residue. The Arf small GTPase is localized to the cis-Golgi where it recruits proteins via their GRAB domain, as part of the transport of cargo from the endoplasmic reticulum to the plasma membrane.
Pssm-ID: 431241 Cd Length: 49 Bit Score: 38.75 E-value: 1.01e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 568978624 1770 STEGKVDKVLMRNLFIGHFHTPK--HQRHEVLRLMGSILGVKREEMEQ 1815
Cdd:pfam10375 1 SSEDTVDRQLVTNLLLSFLSIPRgdTKKFEILQLIANLLEWDDEQREQ 48
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
281-1006 |
1.09e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 281 TDHSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHD-QEVWKKEQERLEVEKREMteQCERLKLELSEA 359
Cdd:TIGR00606 214 QYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNlSKIMKLDNEIKALKSRKK--QMEKDNSELELK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 360 QQSALRQSDAAVEEetilPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEE 439
Cdd:TIGR00606 292 MEKVFQGTDEQLND----LYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARD 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 440 LQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQ---SIHENEILMAE-LEELDKQNQEATKHVILIKD 515
Cdd:TIGR00606 368 SLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQlcaDLQSKERLKQEqADEIRDEKKGLGRTIELKKE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 516 QLSKQQSEGDSVIKKLKEELAGEK----------QRTHQLEDDKMNIIKELTVQKEKLTHSEQAlsDLQLTKQKLEDKVE 585
Cdd:TIGR00606 448 ILEKKQEELKFVIKELQQLEGSSDrileldqelrKAERELSKAEKNSLTETLKKEVKSLQNEKA--DLDRKLRKLDQEME 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 586 DLvDQLSKSEKNNFDIQKENHELREHIRQNEEELStvrSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNE 665
Cdd:TIGR00606 526 QL-NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHS---DELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELA 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 666 HLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEerKYEQTVQELSSA 745
Cdd:TIGR00606 602 SLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQ--FITQLTDENQSC 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 746 CSPDTSALQLEQE--RLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLInEKEicIVKLKEKSSEL 823
Cdd:TIGR00606 680 CPVCQRVFQTEAElqEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK-EKE--IPELRNKLQKV 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 824 QKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEE---NNHLQEELERLREQQSRVVPAPEPRTLDST-TELESELSQLHR 899
Cdd:TIGR00606 757 NRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDvtiMERFQMELKDVERKIAQQAAKLQGSDLDRTvQQVNQEKQEKQH 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 900 IKGHLEEEIKHHQKMIEDQNqsklQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEER 979
Cdd:TIGR00606 837 ELDTVVSKIELNRKLIQDQQ----EQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDS 912
|
730 740
....*....|....*....|....*..
gi 568978624 980 QDSQTENSDifQETKVQSLSIEHGSEK 1006
Cdd:TIGR00606 913 PLETFLEKD--QQEKEELISSKETSNK 937
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1385-1759 |
1.12e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1385 EQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQ----AVTNLKERILILEMDISKLkge 1460
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEkreyEGYELLKEKEALERQKEAI--- 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1461 nekivdaskgkETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQ 1540
Cdd:TIGR02169 243 -----------ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1541 ERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLEsedshtrealAAEDREAKLRKKVSVLEEklvsss 1620
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE----------EYAELKEELEDLRAELEE------ 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1621 namENASHQASVQ-VESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYS------AELEK 1693
Cdd:TIGR02169 376 ---VDKEFAETRDeLKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEekedkaLEIKK 452
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568978624 1694 QNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEMLDD 1759
Cdd:TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1505-1734 |
1.25e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1505 AFEQLLKEKEQGKA-GELNQLLNAVKSMQEKTVTFQQERDqvMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDH 1583
Cdd:COG4913 240 AHEALEDAREQIELlEPIRELAERYAAARERLAELEYLRA--ALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1584 LLESEDSHT--REALAAE--DREAKLRKKVSVLEEKLvsssnamenasHQASVQVESLQEQLNMVSKQRDETALQLSVSQ 1659
Cdd:COG4913 318 LDALREELDelEAQIRGNggDRLEQLEREIERLEREL-----------EERERRRARLEALLAALGLPLPASAEEFAALR 386
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568978624 1660 EQVKQYALSLANLQMVLehfqQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTE 1734
Cdd:COG4913 387 AEAAALLEALEEELEAL----EEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDE 457
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
166-669 |
1.31e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 166 DVISSQQEINRLSNEVSRleselghwrhiAQTKVQGAQSSDQTEICKLQNIIKELKQNRSQ--DLDDHQHEL-SALQNAH 242
Cdd:TIGR04523 233 NIEKKQQEINEKTTEISN-----------TQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKikELEKQLNQLkSEISDLN 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 243 QQKLTEISRRHREELSDYEERIEELENLLQQGGSGVT--------------------VTDHSKVYEMQNTIQILQMEKVE 302
Cdd:TIGR04523 302 NQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISqlneqisqlkkeltnsesenSEKQRELEEKQNEIEKLKKENQS 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 303 STKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEETILPHSSS 382
Cdd:TIGR04523 382 YKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 383 VAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQMcvqtLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRdl 462
Cdd:TIGR04523 462 TRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKK----LNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKE-- 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 463 dLFSQVHDLKHNLEAKEQELNQSIHENEILmaeleeldkQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRT 542
Cdd:TIGR04523 536 -KESKISDLEDELNKDDFELKKENLEKEID---------EKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 543 HQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTV 622
Cdd:TIGR04523 606 EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDW 685
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 568978624 623 RSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQ 669
Cdd:TIGR04523 686 LKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELEN 732
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
467-602 |
1.45e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.66 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 467 QVHDLKHNLEAKEQELNQSIHENEILMAELEELdkqnqeatkhviliKDQLSKQQSEGDSVIKKLKEELAGE-KQRTHQL 545
Cdd:PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKL--------------KEELEEKKEKLQEEEDKLLEEAEKEaQQAIKEA 582
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 568978624 546 EDDKMNIIKELTvQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQ 602
Cdd:PRK00409 583 KKEADEIIKELR-QLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
226-896 |
1.56e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 226 QDLDDHQHELSALQNAHQQKL---TEISRRHREELSDYEERIEELENLLQQGgsgvtvtdHSKVYEMQNTIQILQMEKVE 302
Cdd:pfam01576 29 KELEKKHQQLCEEKNALQEQLqaeTELCAEAEEMRARLAARKQELEEILHEL--------ESRLEEEEERSQQLQNEKKK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 303 STKQIEDLENKIKEihkrlssaehdqevWKKEQERLEVEKREMTEQCERLK--LELSEAQQSALrQSDAAVEEETILPHS 380
Cdd:pfam01576 101 MQQHIQDLEEQLDE--------------EEAARQKLQLEKVTTEAKIKKLEedILLLEDQNSKL-SKERKLLEERISEFT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 381 SSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKlqmcvQTLEKEKSLLSQEKEELQISLSklsseyevikstatr 460
Cdd:pfam01576 166 SNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGR-----QELEKAKRKLEGESTDLQEQIA--------------- 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 461 dlDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKK---LKEELAG 537
Cdd:pfam01576 226 --ELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQrrdLGEELEA 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 538 EKQrthQLED--DKMNIIKELTVQKEK-LTHSEQALSD--------LQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENH 606
Cdd:pfam01576 304 LKT---ELEDtlDTTAAQQELRSKREQeVTELKKALEEetrsheaqLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQ 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 607 ELREHIRQNEEELSTVRSELTQSQTQGssrnvkddllKERETQVQNLKQNLSEVEQlnehleqvafdlrtENEELLEAYE 686
Cdd:pfam01576 381 ALESENAELQAELRTLQQAKQDSEHKR----------KKLEGQLQELQARLSESER--------------QRAELAEKLS 436
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 687 EVRNQLeESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSAL-QLEQERLIQLNQ 765
Cdd:pfam01576 437 KLQSEL-ESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQeQLEEEEEAKRNV 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 766 EKDF-----EIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETL 840
Cdd:pfam01576 516 ERQLstlqaQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQL 595
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 568978624 841 RQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQ 896
Cdd:pfam01576 596 VSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEA 651
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
772-1749 |
1.65e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 772 AELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEicivkLKEKSSELQKELDKCAQT--LRKNETLRQTIEEKDR 849
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE-----KAERYQALLKEKREYEGYelLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 850 SLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSL 929
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 930 QEQKKELDEFKYQHEQMSISHTRLFLEKD---EEIKNLQKTIEQIKAQLHEERQDSQTensdIFQETKVQSLSIEHGSEK 1006
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAELEEVDKEFAE----TRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1007 HDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDevgkltqiIQQKDLEIQALHARISSasysqdvvyLQQQ 1086
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE--------KEDKALEIKKQEWKLEQ---------LAAD 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1087 LHAYAMEREKVMVILNEKTRENSQLKTEYhkviDIISAKEAALIKLQDENKKMSTRFESSGQDMFKeTIQNLSRIIREKD 1166
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQREL----AEAEAQARASEERVRGGRAVEEVLKASIQGVHG-TVAQLGSVGERYA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1167 IEID-ALSQKCQTLltVLQTSGTGSEAggvnsnqfEELLQERdklkqqvkKMEEWKQQVMTTVQNMQHESAQLQEELHQL 1245
Cdd:TIGR02169 539 TAIEvAAGNRLNNV--VVEDDAVAKEA--------IELLKRR--------KAGRATFLPLNKMRDERRDLSILSEDGVIG 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1246 QAQVSVDSDNNSKLQVDY----TGLIQSYEQNETKLKNFgqelaqvqhsigQLCNTKDLLLGKLDIMSpqlssGSSLTSQ 1321
Cdd:TIGR02169 601 FAVDLVEFDPKYEPAFKYvfgdTLVVEDIEAARRLMGKY------------RMVTLEGELFEKSGAMT-----GGSRAPR 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1322 AAEPLRASQSSEPHESSQLLQqEVDDLRKSLQEKDATIRtlqennhRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVL 1401
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLE-GLKRELSSLQSELRRIE-------NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL 735
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1402 QNLLKEKDLLIKAKSDQLhssnenlankvnenELLRQAVTNLKERILILEMDISKLKGENEKIVDASKG-----KETEYQ 1476
Cdd:TIGR02169 736 KERLEELEEDLSSLEQEI--------------ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsripeIQAELS 801
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1477 ALQETNMKFSMMLREKEfechsmreKALAFEQLLKEKEQGKAGELNQLLNAVKSmqektvtfqqerdqvmlalkQKQMET 1556
Cdd:TIGR02169 802 KLEEEVSRIEARLREIE--------QKLNRLTLEKEYLEKEIQELQEQRIDLKE--------------------QIKSIE 853
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1557 STLQNEVQRLRDKESRLNQELQRLRDhlLESEDSHTREalaaeDREaKLRKKVSVLEEKLVSSSNAMENASHQASVQVES 1636
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALRD--LESRLGDLKK-----ERD-ELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1637 LQEQLNMVSKQRDETALQLSVSQEQvkqyaLSLANLQMVLEHFQQEEKAmysaeLEKQNHLLAEWKKKAEslegkvlslq 1716
Cdd:TIGR02169 926 LEALEEELSEIEDPKGEDEEIPEEE-----LSLEDVQAELQRVEEEIRA-----LEPVNMLAIQEYEEVL---------- 985
|
970 980 990
....*....|....*....|....*....|...
gi 568978624 1717 ERLDEANAALDSASRLTEQLDLKEEQIEELKKQ 1749
Cdd:TIGR02169 986 KRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
649-886 |
1.65e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 649 QVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISlEKTAMLEWEKAPLETELCRAEKRV 728
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE-QELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 729 LEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFE---IAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQL 805
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLkylAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 806 INEkeicivkLKEKSSELQKELDKCAQTLRKnetLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLD 885
Cdd:COG4942 180 LAE-------LEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249
|
.
gi 568978624 886 S 886
Cdd:COG4942 250 A 250
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
589-821 |
1.68e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 589 DQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNvkdDLLKERETQVQNLKQNLSEVEQLNEHLE 668
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA---RRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 669 QVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKApleteLCRAEKRVLEEERKYEQTVQELSSACSP 748
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-----LAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568978624 749 DTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSS 821
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
304-874 |
1.74e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 304 TKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEvekremtEQCERLKLELSEAQQSALRQSDAAVEEETILPHSSSV 383
Cdd:TIGR00606 583 SKEINQTRDRLAKLNKELASLEQNKNHINNELESKE-------EQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQR 655
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 384 AEvlrLQQALTDAENEIMRLRSLNQDI-----SLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIksta 458
Cdd:TIGR00606 656 AM---LAGATAVYSQFITQLTDENQSCcpvcqRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEM---- 728
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 459 trdldlFSQVHDLKHNLEAKEQELNQSIHENEILMAELEEL--DKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELA 536
Cdd:TIGR00606 729 ------LGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLknDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELK 802
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 537 GEKQRTHQLEddkmniikeltvqkeklthSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNE 616
Cdd:TIGR00606 803 DVERKIAQQA-------------------AKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK 863
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 617 EELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESV 696
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKV 943
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 697 AGNKqislEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQlnqekDFEIAELKK 776
Cdd:TIGR00606 944 NDIK----EKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQ-----DIDTQKIQE 1014
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 777 SIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEicIVKLKEKSSELQKELDkcaqTLRKNETLrqtieekdrSLGSMKE 856
Cdd:TIGR00606 1015 RWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ--VLQMKQEHQKLEENID----LIKRNHVL---------ALGRQKG 1079
|
570
....*....|....*...
gi 568978624 857 ENNHLQEELERLREQQSR 874
Cdd:TIGR00606 1080 YEKEIKHFKKELREPQFR 1097
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1197-1423 |
1.79e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1197 SNQFEELLQERDKLKQQVKKMEEWKQQvmttvqnMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETK 1276
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAA-------LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1277 LKNFGQELAQVQHSIGQLCNTkDLLLGKLDIMSPQLSSGSSLTS-------QAAEPLRASQSSEPHESSQLLQQEVDDLR 1349
Cdd:COG4942 92 IAELRAELEAQKEELAELLRA-LYRLGRQPPLALLLSPEDFLDAvrrlqylKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568978624 1350 KSLQEKDATIRTLQENNHRLSDSVAASSEVE---RKEHEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSN 1423
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLarlEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
759-980 |
1.80e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 759 RLIQLNQEKD-----------FEIAELKKSIE--------QMDTDHKRTKETLSSSLEEQKQLTQLINEKEicivklKEK 819
Cdd:PRK05771 10 LIVTLKSYKDevlealhelgvVHIEDLKEELSnerlrklrSLLTKLSEALDKLRSYLPKLNPLREEKKKVS------VKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 820 SSELQKELDKcaqtlrknetlrqTIEEKDRSLGSMKEENNHLQEELERLREQQSRVvpapEP-RTLDSTTELESELSQLH 898
Cdd:PRK05771 84 LEELIKDVEE-------------ELEKIEKEIKELEEEISELENEIKELEQEIERL----EPwGNFDLDLSLLLGFKYVS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 899 RIKGHLEEEIKHHQKMIEDQNQSKLQ-------------LLQSLQEQKKELDEFKYqhEQMSISHTRLFLE----KDEEI 961
Cdd:PRK05771 147 VFVGTVPEDKLEELKLESDVENVEYIstdkgyvyvvvvvLKELSDEVEEELKKLGF--ERLELEEEGTPSElireIKEEL 224
|
250
....*....|....*....
gi 568978624 962 KNLQKTIEQIKAQLHEERQ 980
Cdd:PRK05771 225 EEIEKERESLLEELKELAK 243
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1336-1650 |
1.82e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.53 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1336 ESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQAD-SEIKQLKEKQEVLQNLLKEKDLLI-- 1412
Cdd:COG5022 907 EIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLhEVESKLKETSEEYEDLLKKSTILVre 986
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1413 -KAKSDQLHSSNENLANKVNENELLRQAVTNLKER---ILILEMDISKLKGEnekivDASKGKETEYQALQETNMKFSMM 1488
Cdd:COG5022 987 gNKANSELKNFKKELAELSKQYGALQESTKQLKELpveVAELQSASKIISSE-----STELSILKPLQKLKGLLLLENNQ 1061
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1489 LREKEFECHSMREKALAFEQLLKEKEQGKaGELNQLLNAVKSMQEKTVTFQQERDQ----VMLALKQKQMETSTLQNEVQ 1564
Cdd:COG5022 1062 LQARYKALKLRRENSLLDDKQLYQLESTE-NLLKTINVKDLEVTNRNLVKPANVLQfivaQMIKLNLLQEISKFLSQLVN 1140
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1565 RLRDKESRLNQELQRLRDHLLESedshTREALAAEDREAKlrkkvsvLEEKLVSSSNAMENASHQASVQVESLQEQL-NM 1643
Cdd:COG5022 1141 TLEPVFQKLSVLQLELDGLFWEA----NLEALPSPPPFAA-------LSEKRLYQSALYDEKSKLSSSEVNDLKNELiAL 1209
|
....*..
gi 568978624 1644 VSKQRDE 1650
Cdd:COG5022 1210 FSKIFSG 1216
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
207-441 |
1.89e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 207 QTEICKLQNIIKELKQNRSQDLDDHQHELSALQNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTVTDHSKV 286
Cdd:pfam12128 663 QSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARR 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 287 YEMQNTIQILQMEKVESTK-------QIEDLENKIKEIHKRLSSAEHD-----------QEVWKKEQERLEVEKREMTEQ 348
Cdd:pfam12128 743 SGAKAELKALETWYKRDLAslgvdpdVIAKLKREIRTLERKIERIAVRrqevlryfdwyQETWLQRRPRLATQLSNIERA 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 349 CERLKLELSEAQQSALRQSdAAVEEETilpHSSSVAEVlRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQMCVQTLEK 428
Cdd:pfam12128 823 ISELQQQLARLIADTKLRR-AKLEMER---KASEKQQV-RLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLED 897
|
250
....*....|...
gi 568978624 429 EKSLLSQEKEELQ 441
Cdd:pfam12128 898 LKLKRDYLSESVK 910
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1203-1779 |
2.03e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1203 LLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKnfgq 1282
Cdd:pfam01576 94 LQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLA---- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1283 ELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRAsQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTL 1362
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEG-ESTDLQEQIAELQAQIAELRAQLAKKEEELQAA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1363 QEnnhRLSDSVAASSEVERKeHEQADSEIKQLKEkqevlqnllkekdllikaksdqlhssnenlankvnENELLRQAVTN 1442
Cdd:pfam01576 249 LA---RLEEETAQKNNALKK-IRELEAQISELQE-----------------------------------DLESERAARNK 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1443 LKERILILEMDISKLKGENEKIVDASKgketeyqALQETNMKfsmmlREKEFEC--HSMREKALAFEQLLKEKEQGKAGE 1520
Cdd:pfam01576 290 AEKQRRDLGEELEALKTELEDTLDTTA-------AQQELRSK-----REQEVTElkKALEEETRSHEAQLQEMRQKHTQA 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1521 LNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEdshtREALAAED 1600
Cdd:pfam01576 358 LEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESE----RQRAELAE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1601 REAKLRKKVsvleEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHfQ 1680
Cdd:pfam01576 434 KLSKLQSEL----ESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEE-E 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1681 QEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSasrLTEQLDLKEEQIEELKKQNELHQEMLDDA 1760
Cdd:pfam01576 509 EEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEA---LTQQLEEKAAAYDKLEKTKNRLQQELDDL 585
|
570 580
....*....|....*....|....*
gi 568978624 1761 ------QKKLMSLVNSTEGKVDKVL 1779
Cdd:pfam01576 586 lvdldhQRQLVSNLEKKQKKFDQML 610
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1324-1553 |
2.15e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1324 EPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEverKEHEQADSEIKQLKEKQEVLQN 1403
Cdd:PRK05771 38 EELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVE---EELEKIEKEIKELEEEISELEN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1404 ----LLKEKDLLIKAKSdqLHSSNENLankvNENELLRQAVTNLKERILilemDISKLKGENEKIVDASKGKETEY---Q 1476
Cdd:PRK05771 115 eikeLEQEIERLEPWGN--FDLDLSLL----LGFKYVSVFVGTVPEDKL----EELKLESDVENVEYISTDKGYVYvvvV 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568978624 1477 ALQETNMKFSMMLREKEFECHSMREKALAFEQL--LKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ 1553
Cdd:PRK05771 185 VLKELSDEVEEELKKLGFERLELEEEGTPSELIreIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERA 263
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1507-1756 |
2.31e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.12 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1507 EQLLKEKEQGK-------AGELNQLLNAVKS-MQEKTVTFQQERDQV------MLALKQKQMETSTLQNEVqrlrdkESR 1572
Cdd:PRK10929 86 QQLNNERDEPRsvppnmsTDALEQEILQVSSqLLEKSRQAQQEQDRAreisdsLSQLPQQQTEARRQLNEI------ERR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1573 LNQelqrlrdhLLESEDSHTREALAAEDREAKLRK-KVSVLEEKLVSSSNAMENA----------SHQASVQVESLQEQL 1641
Cdd:PRK10929 160 LQT--------LGTPNTPLAQAQLTALQAESAALKaLVDELELAQLSANNRQELArlrselakkrSQQLDAYLQALRNQL 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1642 NMVSKQRDETALqlsvsqEQVKQYALSLANL-QMVLEHFQQEEkaMYSAELEKQNH---LLAEWKKKAESLEGKVLSLQE 1717
Cdd:PRK10929 232 NSQRQREAERAL------ESTELLAEQSGDLpKSIVAQFKINR--ELSQALNQQAQrmdLIASQQRQAASQTLQVRQALN 303
|
250 260 270
....*....|....*....|....*....|....*....
gi 568978624 1718 RLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEM 1756
Cdd:PRK10929 304 TLREQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEM 342
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
172-693 |
2.38e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 172 QEINRLSNEVSRLESELGhwrhiaqtkvqgAQSSDQTEICKLQNIIKELKQnRSQDLDDHQHELSALQNAHQQKLTEiSR 251
Cdd:PRK03918 207 REINEISSELPELREELE------------KLEKEVKELEELKEEIEELEK-ELESLEGSKRKLEEKIRELEERIEE-LK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 252 RHREELSDYEERIEELENLlqqggsgvtVTDHSKVYEMQNTIQilqMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVW 331
Cdd:PRK03918 273 KEIEELEEKVKELKELKEK---------AEEYIKLSEFYEEYL---DELREIEKRLSRLEEEINGIEERIKELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 332 KKEQERLEVEKREMTEQCERLKL-ELSEAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQALTDAENEIM-RLRSLNQD 409
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHELyEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITaRIGELKKE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 410 IS----------------------LAEDNQKLQMCVQTLEKEKslLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQ 467
Cdd:PRK03918 421 IKelkkaieelkkakgkcpvcgreLTEEHRKELLEEYTAELKR--IEKELKEIEEKERKLRKELRELEKVLKKESELIKL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 468 vHDLKHNLEAKEQELNQ-SIHENEILMAELEELDKQNQEATKHVILIKDQLSKqqsegdsvIKKLKEELAGEKQRTHQLE 546
Cdd:PRK03918 499 -KELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK--------LEELKKKLAELEKKLDELE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 547 DDKMNIIKELTVQ--------KEKLTHSEQA------LSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHI 612
Cdd:PRK03918 570 EELAELLKELEELgfesveelEERLKELEPFyneyleLKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKEL 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 613 rqneeelstvrSELTQSQTQGSSRNVKDDLLKEREtqvqNLKQNLSEVEQLNEHLEQVAFDLRTENEElLEAYEEVRNQL 692
Cdd:PRK03918 650 -----------EELEKKYSEEEYEELREEYLELSR----ELAGLRAELEELEKRREEIKKTLEKLKEE-LEEREKAKKEL 713
|
.
gi 568978624 693 E 693
Cdd:PRK03918 714 E 714
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
394-871 |
2.52e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 394 TDAENEIMRLRSLNQDISLAEDNQKLQmcvQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLD-LFSQVHDLK 472
Cdd:pfam05557 41 RQLDRESDRNQELQKRIRLLEKREAEA---EEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVIScLKNELSELR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 473 HNLEAKEQELNQSIHENEILMAELEELDKQNQEATKhvilIKDQLSKQQS---EGDSVIKKLKEELAGEKQRTHQLEDDK 549
Cdd:pfam05557 118 RQIQRAELELQSTNSELEELQERLDLLKAKASEAEQ----LRQNLEKQQSslaEAEQRIKELEFEIQSQEQDSEIVKNSK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 550 MNI--IKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKnnfdiqkenhelrehirqNEEELSTVRSELT 627
Cdd:pfam05557 194 SELarIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREEK------------------YREEAATLELEKE 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 628 QSQTQgssrnvkddlLKERETQVQNLKQNLSEVEQLNEHLEQVafdlrteneelleayeevrnQLEESVAGNKQISLEKT 707
Cdd:pfam05557 256 KLEQE----------LQSWVKLAQDTGLNLRSPEDLSRRIEQL--------------------QQREIVLKEENSSLTSS 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 708 A-MLEWEKAPLETELCRAEKRVLEEERKYEQTvqelssacspdTSALQLEQERLIQLNQEKDFeiaeLKKSIEQMDTDhK 786
Cdd:pfam05557 306 ArQLEKARRELEQELAQYLKKIEDLNKKLKRH-----------KALVRRLQRRVLLLTKERDG----YRAILESYDKE-L 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 787 RTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKEL----DKCAQTLRKNETLRQTIEEKDRSLG-----SMKEE 857
Cdd:pfam05557 370 TMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELggykQQAQTLERELQALRQQESLADPSYSkeevdSLRRK 449
|
490
....*....|....
gi 568978624 858 NNHLQEELERLREQ 871
Cdd:pfam05557 450 LETLELERQRLREQ 463
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
79-468 |
2.69e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 79 EKHEASELQIKQQSSSYRSQLQQKEEEINHLKARQLALQDELLRLQSAAQSAHLGSGSAPAASASSSFSYGVSHRVSAFH 158
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 159 EDDMDfgdviSSQQEINRLSNEVSRLESELGHWRHIAQTKVQGAQSSDQteicKLQNIIKELKQNRSQdLDDHQHELSAL 238
Cdd:TIGR02168 746 EERIA-----QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA----QIEQLKEELKALREA-LDELRAELTLL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 239 qNAHQQKLTEISRRHREELSDYEERIEELENllqqggsgvtvtdhskvyemqnTIQILQMEKVESTKQIEDLENKIKEIH 318
Cdd:TIGR02168 816 -NEEAANLRERLESLERRIAATERRLEDLEE----------------------QIEELSEDIESLAAEIEELEELIEELE 872
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 319 K---------------------RLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQ-----SDAAVE 372
Cdd:TIGR02168 873 SeleallnerasleealallrsELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLqerlsEEYSLT 952
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 373 EETILPHSSSV-AEVLRLQQALTDAENEIMRLRSLNQDiSLAEdnqklqmcVQTLEKEKSLLSQEKEELQISLSKLSSEY 451
Cdd:TIGR02168 953 LEEAEALENKIeDDEEEARRRLKRLENKIKELGPVNLA-AIEE--------YEELKERYDFLTAQKEDLTEAKETLEEAI 1023
|
410
....*....|....*...
gi 568978624 452 EVIKSTAT-RDLDLFSQV 468
Cdd:TIGR02168 1024 EEIDREAReRFKDTFDQV 1041
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
484-811 |
3.45e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 484 QSIHENEILMAELEELdkQNQEATKHviliKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQ---- 559
Cdd:pfam17380 263 QTMTENEFLNQLLHIV--QHQKAVSE----RQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQaaiy 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 560 --KEKLT-HSEQALSDLQLTKQKLED---KVEDLVDQLSKSEKNNfDIQKENHELREHIRQneeELSTVRSELTQSQTQg 633
Cdd:pfam17380 337 aeQERMAmERERELERIRQEERKRELeriRQEEIAMEISRMRELE-RLQMERQQKNERVRQ---ELEAARKVKILEEER- 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 634 sSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWE 713
Cdd:pfam17380 412 -QRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAE 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 714 ---KAPLETELCRAEKRVLEEERKYEQTVQELssacspdtsalqleQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKE 790
Cdd:pfam17380 491 eqrRKILEKELEERKQAMIEEERKRKLLEKEM--------------EERQKAIYEEERRREAEEERRKQQEMEERRRIQE 556
|
330 340
....*....|....*....|.
gi 568978624 791 TLSSSLEEQKQLTQLINEKEI 811
Cdd:pfam17380 557 QMRKATEERSRLEAMEREREM 577
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
325-671 |
3.58e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 325 EHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQALTDAeneimRLR 404
Cdd:pfam07888 58 EKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEA-----RIR 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 405 SLNQDIS---------------LAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVH 469
Cdd:pfam07888 133 ELEEDIKtltqrvleretelerMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQ 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 470 DLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDK 549
Cdd:pfam07888 213 DTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADAS 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 550 MNIikeltvqKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQ----NEEELSTVRSE 625
Cdd:pfam07888 293 LAL-------REGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGRekdcNRVQLSESRRE 365
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 568978624 626 LTQsqtQGSSRNVkddLLKEREtQVQNLKQNLSE-VEQLNEHLEQVA 671
Cdd:pfam07888 366 LQE---LKASLRV---AQKEKE-QLQAEKQELLEyIRQLEQRLETVA 405
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1547-1726 |
3.71e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1547 LALKQKQMETstLQNEVQRLRDKESRLNQELQRLRDHL-----LESEDSHTREALAAEDREAKLRKKVsvleEKLVSSSN 1621
Cdd:COG4913 612 LAALEAELAE--LEEELAEAEERLEALEAELDALQERRealqrLAEYSWDEIDVASAEREIAELEAEL----ERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1622 AMEnashQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNHLLAEW 1701
Cdd:COG4913 686 DLA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD 761
|
170 180
....*....|....*....|....*...
gi 568978624 1702 ---KKKAESLEGKVLSLQERLDEANAAL 1726
Cdd:COG4913 762 aveRELRENLEERIDALRARLNRAEEEL 789
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
210-859 |
4.13e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 210 ICKLQNIIKELKQnrsqdLDDHQHELSALQNAHQQKLTEISRRhREELSDYEERIEELENllqqggsgvtvtdhskvyEM 289
Cdd:COG5022 771 IKKIQVIQHGFRL-----RRLVDYELKWRLFIKLQPLLSLLGS-RKEYRSYLACIIKLQK------------------TI 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 290 QNTIQILQMEKVESTKQIEDLENKIKEIHKRLS--SAEHDQEVWKKEQERLEVEKREMTEqcerLKLELSEAQQSALRQS 367
Cdd:COG5022 827 KREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKrfSLLKKETIYLQSAQRVELAERQLQE----LKIDVKSISSLKLVNL 902
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 368 DaavEEETILPHSSSVAEVLRLQQALTdaENEIMRLRSLNQDISLAEDnqkLQMCVQTLEKEKSLLSQEKeelqiSLSKL 447
Cdd:COG5022 903 E---LESEIIELKKSLSSDLIENLEFK--TELIARLKKLLNNIDLEEG---PSIEYVKLPELNKLHEVES-----KLKET 969
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 448 SSEYE--VIKSTATRdldlfSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKdqLSKQQSEGD 525
Cdd:COG5022 970 SEEYEdlLKKSTILV-----REGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASK--IISSESTEL 1042
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 526 SVIKKLKE--ELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQA---------LSDLQLTKQ---KLEDKVEDLVDQL 591
Cdd:COG5022 1043 SILKPLQKlkGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLEStenllktinVKDLEVTNRnlvKPANVLQFIVAQM 1122
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 592 SKSekNNFDIQKENHELREH--------IRQNEEELSTVRSELTQSQTqgSSRNVKDDLLKERETQV----QNLKQNLSE 659
Cdd:COG5022 1123 IKL--NLLQEISKFLSQLVNtlepvfqkLSVLQLELDGLFWEANLEAL--PSPPPFAALSEKRLYQSalydEKSKLSSSE 1198
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 660 VEQLNEHLEQVAFDLRTENE---ELLEAYEEVRNQLEESVAGNKQISLEKTAMLEwEKAPLETELCRA-------EKRVL 729
Cdd:COG5022 1199 VNDLKNELIALFSKIFSGWPrgdKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTP-ASMSNEKLLSLLnsidnllSSYKL 1277
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 730 EEE---RKYEQTVQE----LSSACSPDTSALQLEQERLIQLNQE------KDFEIAELKKSIEQmDTDHKRTKETLSSSL 796
Cdd:COG5022 1278 EEEvlpATINSLLQYinvgLFNALRTKASSLRWKSATEVNYNSEelddwcREFEISDVDEELEE-LIQAVKVLQLLKDDL 1356
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 797 EEQKQLTQLINE-KEICIVKLK------EKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENN 859
Cdd:COG5022 1357 NKLDELLDACYSlNPAEIQNLKsrydpaDKENNLPKEILKKIEALLIKQELQLSLEGKDETEVHLSEIFS 1426
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
222-662 |
4.27e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.05 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 222 QNRSQDLDDHQHELSALQnAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTVTDHSKVYEMQNTIQILQMEKV 301
Cdd:pfam07111 252 QHLQEDRADLQATVELLQ-VRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLKAQDLEHR 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 302 ESTKQIEDlenKIKEIHKRLSSAEHDQEVWKK--EQERLEVEKREMTeqCERLKLELSEAQQSALRQSD--AAVEEETIL 377
Cdd:pfam07111 331 DSVKQLRG---QVAELQEQVTSQSQEQAILQRalQDKAAEVEVERMS--AKGLQMELSRAQEARRRQQQqtASAEEQLKF 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 378 PHSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAednqklqmcVQTLEKEKSLLSQekeelQISLSKLSSEYEVIKST 457
Cdd:pfam07111 406 VVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYA---------VRKVHTIKGLMAR-----KVALAQLRQESCPPPPP 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 458 ATR-DLDLFSQVHDLKHNLEAKEQELNQSIHeneILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELA 536
Cdd:pfam07111 472 APPvDADLSLELEQLREERNRLDAELQLSAH---LIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLE 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 537 GEKQRTHQLEDDKMNIIKELTVQKEklthseqalsdlqLTKQKLEDKVED----LVDQLSKSEKnnfdiqkenhELREHI 612
Cdd:pfam07111 549 VARQGQQESTEEAASLRQELTQQQE-------------IYGQALQEKVAEvetrLREQLSDTKR----------RLNEAR 605
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 568978624 613 RQNEEELSTVRsELTQSQTQGSSRNVKDDLLKE--RETQVQNLKQNLSEVEQ 662
Cdd:pfam07111 606 REQAKAVVSLR-QIQHRATQEKERNQELRRLQDeaRKEEGQRLARRVQELER 656
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
639-1484 |
4.34e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 639 KDDLLKERETQVQNLKQNLSEVEQLNEHLEQvafdLRTENEELLEaYEEVRNQLEES----VAGNKQISLEKTAMLEWEK 714
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLER----LRREREKAER-YQALLKEKREYegyeLLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 715 APLETELCRAEKRVLEEERKYEQTVQELSSAcSPDTSALQLEQERLIQLnqekdfEIAELKKSIEQMDTDHKRTKETLSS 794
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEEL-NKKIKDLGEEEQLRVKE------KIGELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 795 SLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKN----ETLRQTIEEKDRSLGSMKEENNHLQEELERLRE 870
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELkeelEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 871 QQSRVVpAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISH 950
Cdd:TIGR02169 400 EINELK-RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 951 TRLflekDEEIKNLQKTIEQIKAQlheeRQDSQTENSDIFQETKVQSLSIE--HGS--------EKHDLS--KAETERLV 1018
Cdd:TIGR02169 479 DRV----EKELSKLQRELAEAEAQ----ARASEERVRGGRAVEEVLKASIQgvHGTvaqlgsvgERYATAieVAAGNRLN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1019 KGIKERELE----IKLLNEKNTS------LTKQIDQLSKDEVGKLTQIIQQKdLEIQALHARISSASYS--QDVVYLQQQ 1086
Cdd:TIGR02169 551 NVVVEDDAVakeaIELLKRRKAGratflpLNKMRDERRDLSILSEDGVIGFA-VDLVEFDPKYEPAFKYvfGDTLVVEDI 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1087 LHAYAMEREKVMVILNEKTRENSQLKTEYHKvidiiSAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLsriIREKD 1166
Cdd:TIGR02169 630 EAARRLMGKYRMVTLEGELFEKSGAMTGGSR-----APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSE---LRRIE 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1167 IEIDALSQKCQTLltvlqtsgtgSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQ 1246
Cdd:TIGR02169 702 NRLDELSQELSDA----------SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1247 AQVSvdsdnnsKLQVDYTGLIQSYeqNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPL 1326
Cdd:TIGR02169 772 EDLH-------KLEEALNDLEARL--SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1327 RASQSSEphessQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEvERKEHEQADSEIKQLKEKQEVLQNLLK 1406
Cdd:TIGR02169 843 IDLKEQI-----KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK-ERDELEAQLRELERKIEELEAQIEKKR 916
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1407 EKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNL---KERILILEMDISKLKGENEKIVDASKGKETEYQALQETNM 1483
Cdd:TIGR02169 917 KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLedvQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRA 996
|
.
gi 568978624 1484 K 1484
Cdd:TIGR02169 997 K 997
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
756-917 |
4.59e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 756 EQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEicivkLKEKSSELQKELDKCAQTLR 835
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP-----LYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 836 KNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMI 915
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
..
gi 568978624 916 ED 917
Cdd:COG4717 230 EQ 231
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
757-1586 |
4.61e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 757 QERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLT---QLINEKEICIVKLKEKSSELQKELDKCAQT 833
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLEssrEIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 834 LRKNETLRQTIE--EKDRSLGSMKEENNHL--QEELERLREQQSRVVPAPEPRTLDSTTELE---SELSQLHRIKGHLEE 906
Cdd:TIGR00606 268 DNEIKALKSRKKqmEKDNSELELKMEKVFQgtDEQLNDLYHNHQRTVREKERELVDCQRELEklnKERRLLNQEKTELLV 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 907 EIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLE-KDEEIKNLQKTIEQIKAQLHEERQDSQTE 985
Cdd:TIGR00606 348 EQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTlVIERQEDEAKTAAQLCADLQSKERLKQEQ 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 986 NSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGKLTQIIQQKDLEIQ 1065
Cdd:TIGR00606 428 ADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQ 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1066 ALHARISSASYSQDvvYLQQQLHAYAMEREKVMVILNEKTRENSQ------------------------LKTEYHKVIDI 1121
Cdd:TIGR00606 508 NEKADLDRKLRKLD--QEMEQLNHHTTTRTQMEMLTKDKMDKDEQirkiksrhsdeltsllgyfpnkkqLEDWLHSKSKE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1122 ISAKEAALIKLQDENKKMSTRFESSGQDMFKETIQ------NLSRIIREKDIEIDaLSQKCQTLLTVLQTSGTGSEAGGV 1195
Cdd:TIGR00606 586 INQTRDRLAKLNKELASLEQNKNHINNELESKEEQlssyedKLFDVCGSQDEESD-LERLKEEIEKSSKQRAMLAGATAV 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1196 NSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNET 1275
Cdd:TIGR00606 665 YSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEK 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1276 KLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRASQSSEPHE---SSQLLQQEVDDLRKSL 1352
Cdd:TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVErkiAQQAAKLQGSDLDRTV 824
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1353 QEKDatiRTLQENNHRLsDSVAASSEVERKEHEQADSEIKQLKEKqevlQNLLKEKDLLIKAKSDQLHSSNENLANKVNE 1432
Cdd:TIGR00606 825 QQVN---QEKQEKQHEL-DTVVSKIELNRKLIQDQQEQIQHLKSK----TNELKSEKLQIGTNLQRRQQFEEQLVELSTE 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1433 NELLRQAVTNLKERILILEMDISKLKGENEKIVDAskgKETEYQALQetnMKFSMMLREKEFECHSMREKALAFEQLLKE 1512
Cdd:TIGR00606 897 VQSLIREIKDAKEQDSPLETFLEKDQQEKEELISS---KETSNKKAQ---DKVNDIKEKVKNIHGYMKDIENKIQDGKDD 970
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568978624 1513 KEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRlRDKESRLNQELQRLRDHLLE 1586
Cdd:TIGR00606 971 YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTL-RKRENELKEVEEELKQHLKE 1043
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
705-918 |
4.63e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 4.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 705 EKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSAcspdTSALQLEQERLIQLNQEKDF---EIAELKKSIEQM 781
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAAleaELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 782 DTDHKRTKETLSSSLEEQKQLTQL-----------INEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRS 850
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568978624 851 LGSMKEENNHLQEELERLREQQSRVVPAPEprtlDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQ 918
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLE----KELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
640-977 |
5.04e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 41.76 E-value: 5.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 640 DDLLKERETQVQNLKQNLSEVEQLNEhleqvafDLRTENEELLEAYEEVRNQLEEsvagnKQISLEKTA-MLEWEKAPLE 718
Cdd:pfam06160 92 EELLDDIEEDIKQILEELDELLESEE-------KNREEVEELKDKYRELRKTLLA-----NRFSYGPAIdELEKQLAEIE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 719 TELCRAEKrvLEEERKYEQTVQELSSAcSPDTSALQLEQER----LIQLNQEKDFEIAELKKSIEQM-----DTDHKRTK 789
Cdd:pfam06160 160 EEFSQFEE--LTESGDYLEAREVLEKL-EEETDALEELMEDipplYEELKTELPDQLEELKEGYREMeeegyALEHLNVD 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 790 ETLSSSLEEQKQLTQLINEKEIciVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSM----KEENNHLQEEL 865
Cdd:pfam06160 237 KEIQQLEEQLEENLALLENLEL--DEAEEALEEIEERIDQLYDLLEKEVDAKKYVEKNLPEIEDYlehaEEQNKELKEEL 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 866 ERLreQQSRVVPAPEprtLDSTTELESELSQlhrikghLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQ 945
Cdd:pfam06160 315 ERV--QQSYTLNENE---LERVRGLEKQLEE-------LEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEEEQEE 382
|
330 340 350
....*....|....*....|....*....|..
gi 568978624 946 MSISHTRlfLEKDEeiKNLQKTIEQIKAQLHE 977
Cdd:pfam06160 383 FKESLQS--LRKDE--LEAREKLDEFKLELRE 410
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
491-981 |
5.68e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 491 ILMAELE-ELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKE--ELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSE 567
Cdd:COG4717 46 MLLERLEkEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEyaELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 568 QALSDLQlTKQKLEDKVEDLVDQLSKSEKNnfdiQKENHELREHIRQNEEELSTVRSELTQSQTQGSsrnvkddllKERE 647
Cdd:COG4717 126 QLLPLYQ-ELEALEAELAELPERLEELEER----LEELRELEEELEELEAELAELQEELEELLEQLS---------LATE 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 648 TQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLE---WEKAPLETELCRA 724
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaalLALLGLGGSLLSL 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 725 EKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQ 804
Cdd:COG4717 272 ILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQE 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 805 LINEKEicivklkekssELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTL 884
Cdd:COG4717 352 LLREAE-----------ELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 885 DSTTELESEL-SQLHRIKGHLEEEIKHHQKMIEDQnqSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLfLEKDEEIKN 963
Cdd:COG4717 421 LLEALDEEELeEELEELEEELEELEEELEELREEL--AELEAELEQLEEDGELAELLQELEELKAELREL-AEEWAALKL 497
|
490
....*....|....*...
gi 568978624 964 LQKTIEQIKAQLHEERQD 981
Cdd:COG4717 498 ALELLEEAREEYREERLP 515
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1206-1761 |
6.25e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 6.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1206 ERDKLKQQVKKMEEWKQQvmttvQNMQHESAQ--LQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLK---NF 1280
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQ-----MELEHKRARieLEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALReqaEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1281 GQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRASQSSEPHESsQLLQQEVDDLRKSLQEKDATIR 1360
Cdd:pfam05557 78 NRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSEL-EELQERLDLLKAKASEAEQLRQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1361 TLQENNHRLSDSVAASSEVERKEHEQADS--EIKQLKEKQEVLQNLLKEKDllikaksdQLHSSNENLANKVNENELLRQ 1438
Cdd:pfam05557 157 NLEKQQSSLAEAEQRIKELEFEIQSQEQDseIVKNSKSELARIPELEKELE--------RLREHNKHLNENIENKLLLKE 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1439 AVTNLKERILILE---MDISKLKGENEKIvdaskgkETEYQALQETNMKFSMMLREKEfechSMREKalaFEQLLKEKEQ 1515
Cdd:pfam05557 229 EVEDLKRKLEREEkyrEEAATLELEKEKL-------EQELQSWVKLAQDTGLNLRSPE----DLSRR---IEQLQQREIV 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1516 GKAgELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRdHLLESEDSHTrea 1595
Cdd:pfam05557 295 LKE-ENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYR-AILESYDKEL--- 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1596 laaedreaklrkkvsvleeklvsssnAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMV 1675
Cdd:pfam05557 370 --------------------------TMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERE 423
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1676 LEHFQQEEKamySAELEKQNHLLAEWKKKAESLEGKVLSLQERLDE-------------------------ANAALDSAS 1730
Cdd:pfam05557 424 LQALRQQES---LADPSYSKEEVDSLRRKLETLELERQRLREQKNElemelerrclqgdydpkktkvlhlsMNPAAEAYQ 500
|
570 580 590
....*....|....*....|....*....|.
gi 568978624 1731 RLTEQLDLKEEQIEELKKQNELHQEMLDDAQ 1761
Cdd:pfam05557 501 QRKNQLEKLQAEIERLKRLLKKLEDDLEQVL 531
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
742-986 |
7.51e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 7.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 742 LSSACSPDTSALQLEQERLIQLNQE---KDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKE 818
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEiaeLEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 819 KSSELQKELDK----------CAQTLRKNETLR-----QTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVpapeprt 883
Cdd:COG4942 91 EIAELRAELEAqkeelaellrALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA------- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 884 lDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKyqheqmsishtrlflekdEEIKN 963
Cdd:COG4942 164 -ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ------------------QEAEE 224
|
250 260
....*....|....*....|...
gi 568978624 964 LQKTIEQIKAQLHEERQDSQTEN 986
Cdd:COG4942 225 LEALIARLEAEAAAAAERTPAAG 247
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1342-1747 |
8.11e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 8.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1342 QQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHS 1421
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1422 SNENL--ANKVNENELLRQAVTNLKERILILEMDISKLKgENEKIVDASKGKETEYQALQETN-MKFSMMLREKEFECHS 1498
Cdd:PTZ00121 1523 KADEAkkAEEAKKADEAKKAEEKKKADELKKAEELKKAE-EKKKAEEAKKAEEDKNMALRKAEeAKKAEEARIEEVMKLY 1601
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1499 MREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQ 1578
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1579 RlrdhllesEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLqEQLNMVSKQRDETALQLSVS 1658
Cdd:PTZ00121 1682 K--------AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA-EEAKKEAEEDKKKAEEAKKD 1752
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1659 QEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNH-LLAEWKKKAESLEGKVLSLQERLDEANAALDSA-----SRL 1732
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEkRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSkemedSAI 1832
|
410
....*....|....*
gi 568978624 1733 TEQLDLKEEQIEELK 1747
Cdd:PTZ00121 1833 KEVADSKNMQLEEAD 1847
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
954-1279 |
8.41e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 8.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 954 FLEKDEEIKNLQKTIEQIKAQLHE--ERQDSQTENSDIFQETKVQSLSIEH---GSEKHDLSKAETERLVKGIKERELEI 1028
Cdd:PLN02939 65 LQSNTDENGQLENTSLRTVMELPQksTSSDDDHNRASMQRDEAIAAIDNEQqtnSKDGEQLSDFQLEDLVGMIQNAEKNI 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1029 KLLNEKNTSLTKQIDQLSKDEvGKLTQIIQQKDLEIQALHARISSASYSQ-DVVYLQQQL----HAYAMEREKVMVILNE 1103
Cdd:PLN02939 145 LLLNQARLQALEDLEKILTEK-EALQGKINILEMRLSETDARIKLAAQEKiHVEILEEQLeklrNELLIRGATEGLCVHS 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1104 KTRENSQLKTEYHKVIDIISAKEAALIKLQDENK------KMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQ 1177
Cdd:PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEErvfkleKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1178 TLLTVLQTSGTGSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQvMTTVQNMQHESAQLQEELhqlqaQVSvDSDNNS 1257
Cdd:PLN02939 304 NLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFS-SYKVELLQQKLKLLEERL-----QAS-DHEIHS 376
|
330 340
....*....|....*....|..
gi 568978624 1258 KLQVdYTGLIQSYEQNETKLKN 1279
Cdd:PLN02939 377 YIQL-YQESIKEFQDTLSKLKE 397
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
294-506 |
8.55e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 8.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 294 QILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKK--------EQERLEVEK-REMTEQCERLKLELSEAQQSAL 364
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQknglvdlsEEAKLLLQQlSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 365 RQSDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSlnqdiSLAEDNQKLQmcvQTLEKEKSLLSQEKEELQISL 444
Cdd:COG3206 244 ALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSA-----RYTPNHPDVI---ALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568978624 445 SKLSSEYEVIKStatRDLDLFSQVHDLKHNLE---AKEQELNQSIHENEILMAELEELDKQNQEA 506
Cdd:COG3206 316 ASLEAELEALQA---REASLQAQLAQLEARLAelpELEAELRRLEREVEVARELYESLLQRLEEA 377
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1201-1444 |
9.04e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 9.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1201 EELLQERDKLKQQVKKMEEWKQQVmttvQNMQHESAQLQEELHQLQAqvsvdsDNNSKLQVDYTGLiqSYEQNETKLKNF 1280
Cdd:PRK11281 66 EQTLALLDKIDRQKEETEQLKQQL----AQAPAKLRQAQAELEALKD------DNDEETRETLSTL--SLRQLESRLAQT 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1281 GQELAQVQHSIGQLcntkdlllgkldimspqlssGSSLTSQAAEPLRAsqSSEPHESSQLLQQ----------EVDDLRK 1350
Cdd:PRK11281 134 LDQLQNAQNDLAEY--------------------NSQLVSLQTQPERA--QAALYANSQRLQQirnllkggkvGGKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1351 SLQEK--------DATI---RTLQENNHRLSDsvaasseVERKEHEQADSEIKQLKEKQEVLQNLLKEKDL-LIKAKSDQ 1418
Cdd:PRK11281 192 SQRVLlqaeqallNAQNdlqRKSLEGNTQLQD-------LLQKQRDYLTARIQRLEHQLQLLQEAINSKRLtLSEKTVQE 264
|
250 260
....*....|....*....|....*..
gi 568978624 1419 LHSSNEnlANKVNENELL-RQAVTNLK 1444
Cdd:PRK11281 265 AQSQDE--AARIQANPLVaQELEINLQ 289
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1497-1684 |
9.14e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 9.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1497 HSMREKALAFEQLLKEKEQGKAGELN-----QLLNAVKSMQEKTVTFQQERDQvmlaLKQKQMETSTLQNEVQRLRDKES 1571
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNlkelkELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1572 RLNQELQRLRDHL--------LESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASV----QVESLQE 1639
Cdd:COG4717 120 KLEKLLQLLPLYQelealeaeLAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLateeELQDLAE 199
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568978624 1640 QLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEK 1684
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER 244
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1114-1495 |
9.36e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 9.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1114 EYHKVIDIISA-------KEAALIKLqDENKKMSTRFESsgqdMFKETIQNLSRIIREKD--IEIDALSQKCQTLltvlq 1184
Cdd:TIGR02169 154 ERRKIIDEIAGvaefdrkKEKALEEL-EEVEENIERLDL----IIDEKRQQLERLRREREkaERYQALLKEKREY----- 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1185 tsgtgseAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNS-KLQVDY 1263
Cdd:TIGR02169 224 -------EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQlRVKEKI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1264 TGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDimspqlSSGSSLTSQAAEplRASQSSEPHEssqlLQQ 1343
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE------ELEREIEEERKR--RDKLTEEYAE----LKE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 1344 EVDDLRKSLQEKDATIRTLQEnnhRLSDsvaassevERKEHEQADSEIKQLKEKQEVLQNLLKEKDllikaksdqlhssn 1423
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRD---ELKD--------YREKLEKLKREINELKRELDRLQEELQRLS-------------- 419
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568978624 1424 ENLANKVNENELLRQAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQETNMKFSMMLREKEFE 1495
Cdd:TIGR02169 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
554-810 |
9.60e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 9.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 554 KELTVQKEKLTHSEQALSDLQLTKQKLEDKVeDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQS-QTQ 632
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEQTL-ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEEtRET 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 633 GSSRNVKD--DLLKERETQVQNLKQNLSEVEQLnehleqvAFDLRTENE----ELLEAYE---EVRNQLEESVAGNKQIS 703
Cdd:PRK11281 118 LSTLSLRQleSRLAQTLDQLQNAQNDLAEYNSQ-------LVSLQTQPEraqaALYANSQrlqQIRNLLKGGKVGGKALR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568978624 704 LEKTAMLEWEKAPLEtelcrAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQE----KDFEIAE--LKKS 777
Cdd:PRK11281 191 PSQRVLLQAEQALLN-----AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEainsKRLTLSEktVQEA 265
|
250 260 270
....*....|....*....|....*....|....
gi 568978624 778 IEQMDTDHKRTKETLSSSLEEQKQLTQ-LINEKE 810
Cdd:PRK11281 266 QSQDEAARIQANPLVAQELEINLQLSQrLLKATE 299
|
|
| |
