|
Name |
Accession |
Description |
Interval |
E-value |
| CEP209_CC5 |
pfam16574 |
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry ... |
1283-1410 |
4.68e-36 |
|
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry a number of coiled-coil regions, and this is the fifth along the length of the protein. It is thought that the proteins are involved in cilia biosynthesis.
Pssm-ID: 465184 [Multi-domain] Cd Length: 128 Bit Score: 134.05 E-value: 4.68e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1283 TMIQLQNDKLKIMQEMKNSQQEHRNMENKTLELELKLKGLEELISTLKDARGAQKVINWHVKIEELRLQELKLNRELVKG 1362
Cdd:pfam16574 1 TMIQLQEDKAKLQEELKHAEEERRRAEDRAQELELKLKGLEELISTLKDGKGAQKVTEWHKKMEEIRLQELKLQRELSKQ 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 568967310 1363 KEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQREVELER 1410
Cdd:pfam16574 81 KEEIKYLENLIREQERTISSLEEEIVQQTKLHEERQLAWDQREVELER 128
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1076-1851 |
1.89e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 1.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1076 HLRTSLKQMEERNFELETKFTELTKINLDAQKVEQMLRDELADSVTKavsdadRQRILELEKSEVELKVEVSKLREISDI 1155
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL------RLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1156 AKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKALIAKlhqhvvSLQISEATALGKLESVTSKLQKMEAYNLRLEQK 1235
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA------ELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1236 LDEKEQALYYARlegrNRAKHLRQTIQSLRrqfsgalplAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEL 1315
Cdd:TIGR02168 374 LEELEEQLETLR----SKVAQLELQIASLN---------NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1316 ELKLKGLEELISTLKDARGAQKVINWHVKIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHE 1395
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1396 ERQMAWDQREV----ELERQLDIFDHQQNEILSAAQKFEDSTGSMPDPSLPLPNQLE---IALRKIKENIQVILKTQATC 1468
Cdd:TIGR02168 521 ILGVLSELISVdegyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPldsIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1469 KSLEEKLKEKESALRLAEQNILSRDKVINELR--LRLPATADREKLIAELERKELEPKSHHTMKIAhQTIANMQARLNHK 1546
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDnaLELAKKLRPGYRIVTLDGDLVRPGGVITGGSA-KTNSSILERRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1547 EEVLKKYQHLLEKAREEQREIVkkheedlhvlhhKLEQQADNSLNKFRQTAQDLLKQSPAPVPTNKHFIRLAEMEQTVAE 1626
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALA------------ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1627 QDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQEthasEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQK 1706
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA----QIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1707 E--ANSRAPTTTMRNLVDRLKSQLALKEKQQKALSRALLELRSEMtAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQ 1784
Cdd:TIGR02168 824 ErlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI-EELESELEALLNERASLEEALALLRSELEELSEE 902
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568967310 1785 IEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNK--------ILREKDGIDQENDELRRQIKRL 1851
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeysltleeAEALENKIEDDEEEARRRLKRL 977
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
28-653 |
6.11e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 6.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 28 LLISLSKVEVNELK------NEDQENMIHLFRITQSLMKMK----AQEVELALEEVEKAGEEQAKFeNQLKTKVMKLENE 97
Cdd:TIGR02168 225 LELALLVLRLEELReeleelQEELKEAEEELEELTAELQELeeklEELRLEVSELEEEIEELQKEL-YALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 98 LEMAQQSAGGRDTRFLR--DEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIID 175
Cdd:TIGR02168 304 KQILRERLANLERQLEEleAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 176 YQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMR-----KNLEESVQEMEKMTDEY 250
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEleeleEELEELQEELERLEEAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 251 NRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKV----------------EEWKL------ 308
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgilgvlselisvdEGYEAaieaal 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 309 ------ILSSKDDEIIEYQQML-QSLRGK-----LKNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEME---K 373
Cdd:TIGR02168 544 ggrlqaVVVENLNAAKKAIAFLkQNELGRvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllG 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 374 NTFIIEDLKNEL----QKDKGTSNFYQQTHYM-----------KIHSKVQILEEKTKEAERIAELAEADAREKDKELVEA 438
Cdd:TIGR02168 624 GVLVVDDLDNALelakKLRPGYRIVTLDGDLVrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 439 LKRLKDYESGVYGL----EDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMIDLTEF 514
Cdd:TIGR02168 704 RKELEELEEELEQLrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 515 RNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAASGLTIDDLNLSetfshENKIEGRKLNFMSLN 594
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL-----EEQIEELSEDIESLA 858
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 595 -NMNETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIK 653
Cdd:TIGR02168 859 aEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1617-2334 |
6.99e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 6.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1617 LAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITEL--------------KVREFENTKLRLQ---ETHASEVKKVKA 1679
Cdd:TIGR02168 188 LDRLEDILNELERQLKSLERQAEKAERYKELKAELRELelallvlrleelreELEELQEELKEAEeelEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1680 EVEDLRHALAQAHKDSQSLKSELQAQKEANSRaptttMRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIA 1759
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISR-----LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1760 VTSQKEANLNVQQVVERHTrELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQ 1839
Cdd:TIGR02168 343 EEKLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1840 ENDELRRQIKRLSSGLQSKTLiDNKQSLIDELQKKVKKLESQLERKVDDVDIKPVKEKSSKEEL----IRWEEGKKWQTK 1915
Cdd:TIGR02168 422 EIEELLKKLEEAELKELQAEL-EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELaqlqARLDSLERLQEN 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1916 VEGLRNRLKEKEGEAHGLAKQLNTLKELF----------------------------AKADKEKLTLQKKLKTTGMTVDQ 1967
Cdd:TIGR02168 501 LEGFSEGVKALLKNQSGLSGILGVLSELIsvdegyeaaieaalggrlqavvvenlnaAKKAIAFLKQNELGRVTFLPLDS 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1968 VLGVRALESEKELEELKKKNLDLENDILYMRTQ----------QALPRDSVVEDLHLQNKY-LQEKLHTLEKKL------ 2030
Cdd:TIGR02168 581 IKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllgGVLVVDDLDNALELAKKLrPGYRIVTLDGDLvrpggv 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2031 ----SKEKYSQSLTSEIESDDHCQK-------EQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKK 2099
Cdd:TIGR02168 661 itggSAKTNSSILERRREIEELEEKieeleekIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2100 GKLELERKLGQ-----VRGAGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKAsgiltSEKMATIEEENRNLKAELEKL 2174
Cdd:TIGR02168 741 EVEQLEERIAQlskelTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL-----KEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2175 KAHFGRQLSMQFESKNKGTEKIVaENERLRKELKKEIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEG 2254
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATER-RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2255 ADSKSWKSIvvsRVYETKMKELESDIAKKNQSITDLKQLVREAT-EREQKAKKYTEDLEQQIEILKNVPEGAETEQELIR 2333
Cdd:TIGR02168 895 ELEELSEEL---RELESKRSELRRELEELREKLAQLELRLEGLEvRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
|
.
gi 568967310 2334 E 2334
Cdd:TIGR02168 972 R 972
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1639-1994 |
4.95e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 4.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1639 KKVSKDLEKQKEITELKvREFENTKLRLQETHAsEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEansraptttmr 1718
Cdd:TIGR02168 667 KTNSSILERRREIEELE-EKIEELEEKIAELEK-ALAELRKELEELEEELEQLRKELEELSRQISALRK----------- 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1719 nLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAvtsqkeanlnvqqvvERHTRELKSQIEDLNENLLKLKEA 1798
Cdd:TIGR02168 734 -DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA---------------EEELAEAEAEIEELEAQIEQLKEE 797
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1799 LKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLidnkqsLIDELQKKVKKL 1878
Cdd:TIGR02168 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA------EIEELEELIEEL 871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1879 ESQLERKVDDVDIKPVKEKSSKEELIrweegkKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKL 1958
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELE------ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
330 340 350
....*....|....*....|....*....|....*.
gi 568967310 1959 KTTGMTVDQVLGVRALESEKELEELKKKNLDLENDI 1994
Cdd:TIGR02168 946 SEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-862 |
6.71e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 6.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 93 KLENELEMAQQSAGGRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQD 172
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 173 IIDYQKQIDSQKESLlsrrgedSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNR 252
Cdd:TIGR02168 297 ISRLEQQKQILRERL-------ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 253 MKALVHQSDAVMDQIKKENEHYRLQVRELtdllkakdeeddpvmmavNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLK 332
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASL------------------NNEIERLEARLERLEDRRERLQQEIEELLKKLE 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 333 NAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKG--TSNFYQQTHYMKIHSKVQIL 410
Cdd:TIGR02168 432 EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQArlDSLERLQENLEGFSEGVKAL 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 411 EEKTKEAE----RIAELAEADAR------------------EKDKELVEALKRLKDYESG------VYGLEDAVIEIKNC 462
Cdd:TIGR02168 512 LKNQSGLSgilgVLSELISVDEGyeaaieaalggrlqavvvENLNAAKKAIAFLKQNELGrvtflpLDSIKGTEIQGNDR 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 463 KAQIKIRD--GEMEVLTKEINKLEMKINDIL-------DENEALRERAGLEPKTMI-----DL----------TEFRNSK 518
Cdd:TIGR02168 592 EILKNIEGflGVAKDLVKFDPKLRKALSYLLggvlvvdDLDNALELAKKLRPGYRIvtldgDLvrpggvitggSAKTNSS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 519 RLKQQQYRAENQVLLKEIES----LEEERLDLKRKIRQMAQERGKRNAasgltiddlnlsETFSHENKIEGRKLNFMSLN 594
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEkiaeLEKALAELRKELEELEEELEQLRK------------ELEELSRQISALRKDLARLE 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 595 NMNET-QSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKDSDVKGGETSLIIPSL 673
Cdd:TIGR02168 740 AEVEQlEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 674 ERLVNAMESknaegifdaslhLKAQVDQLTGRNEELRQELRQSRKEAVNYSQQLVKANLKIDHLEKETD-LLRQSAGSNV 752
Cdd:TIGR02168 820 ANLRERLES------------LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEaLLNERASLEE 887
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 753 VYKgidlpdgiapssayIINSQNEYLIHLLQELDNK----EKKLKHLEDSLEDYNRKFAVIRhQQSLLYKEYLSEKdiWK 828
Cdd:TIGR02168 888 ALA--------------LLRSELEELSEELRELESKrselRRELEELREKLAQLELRLEGLE-VRIDNLQERLSEE--YS 950
|
810 820 830
....*....|....*....|....*....|....
gi 568967310 829 TDSEMIREEKRKLEDQAEQDAVKVKEYNNLLSAL 862
Cdd:TIGR02168 951 LTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
518-1269 |
1.20e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 1.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 518 KRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAASGLTIDDLNLSETFSHE--NKIEGRKLNFMSLNN 595
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEleEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 596 -MNETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKDsdvkggetsliIPSLE 674
Cdd:TIGR02168 296 eISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE-----------LEELE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 675 RLVNAMESKNAEgifdaslhLKAQVDQLTGRNEELRQELRQSRKEAVNYSQQLVKANLKIDHLEKETDLLRQSAGSNVVY 754
Cdd:TIGR02168 365 AELEELESRLEE--------LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 755 K---GIDLPDGIAPSSAYIINSQNEYLIHLLQELDNKEKKLKHLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKDIWKTds 831
Cdd:TIGR02168 437 ElqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN-- 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 832 emirEEKRKLEDQAEQDAVKV-KEYNNLLSALQMDSNEMKKMLSENSRKITVLQVNEKSLIRQyTTLVEMERHLRKENGK 910
Cdd:TIGR02168 515 ----QSGLSGILGVLSELISVdEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRV-TFLPLDSIKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 911 HRNdviaMEAEVTEKLGSLQRFKEMAIFKIAALQKVIDNSVSLSELELANKQYNELTTKYRDI----------------- 973
Cdd:TIGR02168 590 DRE----ILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVtldgdlvrpggvitggs 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 974 LQKDNMLVQRTSNLEHLECENASLKEQMEAISKELEITKEKLHTIEQAWEQETKLGNDsnmdkakksmtnsdivsISKKI 1053
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE-----------------LSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1054 TVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFTELTKiNLDAQKVEQMLRDELADSVTKAVSdADRQRIL 1133
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-ELAEAEAEIEELEAQIEQLKEELK-ALREALD 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1134 ELEKSEVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQ-SDEKALIAKLHQHVVSLQISEATAL 1212
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEiEELEELIEELESELEALLNERASLE 886
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1213 GKLESVTSKLQKMEAYNLRLEQKLDEKEQALYYARL---EGRNRAKHLRQTIQSLRRQFS 1269
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKRSELRRELEELREklaQLELRLEGLEVRIDNLQERLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
113-655 |
4.59e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 4.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 113 LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRG 192
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 193 EDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENE 272
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 273 HYRLQVRELTDLLKAKDEEddpvmmavnakVEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDAdKSNIMALKQGIQE 352
Cdd:COG1196 404 ELEEAEEALLERLERLEEE-----------LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE-EALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 353 RDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQTHYMKIHSKVQILEEKTKEAERIAELAEADA---- 428
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAlqni 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 429 -REKDKELVEALKRLKDYESG-------------------------VYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINK 482
Cdd:COG1196 552 vVEDDEVAAAAIEYLKAAKAGratflpldkiraraalaaalargaiGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 483 LEMKINDILDENEALRERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNA 562
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 563 ASGLTIDDLNLSETFSHENKIEGRKLNFMSLNNMNETQSKNEFLSRE---LAEKEKDLERSRTVIAKF------------ 627
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEppdLEELERELERLEREIEALgpvnllaieeye 791
|
570 580 590
....*....|....*....|....*....|
gi 568967310 628 --QSKLKELVEENKQLEEGMKEILQAIKDM 655
Cdd:COG1196 792 elEERYDFLSEQREDLEEARETLEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1627-1908 |
4.63e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 4.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1627 QDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQK 1706
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1707 EANSRAptttmrnlvDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAvtsqKEANLNVQQVVERHTRELKSQIE 1786
Cdd:COG1196 313 ELEERL---------EELEEELAELEEELEELEEELEELEEELEEAEEELEEA----EAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1787 DLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQS 1866
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568967310 1867 LIDELQKKVKKLESQLERKVDDVDIKPVKEKSSKEELIRWEE 1908
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1551-2422 |
5.53e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 5.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1551 KKYQHLLEKAREEQREIVKKHEEDLHVLHHKLEQQAdNSLNKFRQTAQDLLKQSPAPVPTNKHFIRlaEMEQTVAEQDDS 1630
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLRLEELREELEELQEEL-KEAEEELEELTAELQELEEKLEELRLEVS--ELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1631 LSSLLTKLKkvskDLEKQKEITELKVREFENTKLRLQEthasEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEANS 1710
Cdd:TIGR02168 290 LYALANEIS----RLEQQKQILRERLANLERQLEELEA----QLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1711 RAptttmRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQvverhtreLKSQIEDLNE 1790
Cdd:TIGR02168 362 EL-----EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER--------LQQEIEELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1791 NLLKLKeaLKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDE 1870
Cdd:TIGR02168 429 KLEEAE--LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1871 LQKKVKKLESQLERKVDDVdikpvkeksskEELIRWEEGkkWQTKVE-GLRNRL-------KEKEGEAHGLAKQLNTLKE 1942
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVL-----------SELISVDEG--YEAAIEaALGGRLqavvvenLNAAKKAIAFLKQNELGRV 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1943 LFAKADKEKLT-LQKKLKTTGMTVDQVLGVralesekeLEELKKKNLDLENDILYMrTQQALPRDSVVEDLHLQNKY-LQ 2020
Cdd:TIGR02168 574 TFLPLDSIKGTeIQGNDREILKNIEGFLGV--------AKDLVKFDPKLRKALSYL-LGGVLVVDDLDNALELAKKLrPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2021 EKLHTLEKKLSKEKYSQSLTSEIESddhcQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKG 2100
Cdd:TIGR02168 645 YRIVTLDGDLVRPGGVITGGSAKTN----SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2101 KLELERKLGQVR-GAGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKmATIEEENRNLKAELEKLKahfg 2179
Cdd:TIGR02168 721 LEELSRQISALRkDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL-AEAEAEIEELEAQIEQLK---- 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2180 rqlsmqfESKNKGTEKIVAENERLRKelkkeieasekLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKs 2259
Cdd:TIGR02168 796 -------EELKALREALDELRAELTL-----------LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES- 856
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2260 wksivvsrvYETKMKELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEilknvpEGAETEQELIRELQLLR 2339
Cdd:TIGR02168 857 ---------LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR------ELESKRSELRRELEELR 921
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2340 LANNQMDKERAELIHQIEINKDQTRADSSIPdsdqlkekINDLETQLRKLELEKQHSKEEVKKLKKELENFDPSFFEEIE 2419
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLSEEYSLT--------LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIE 993
|
...
gi 568967310 2420 DLK 2422
Cdd:TIGR02168 994 EYE 996
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
114-493 |
1.22e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 114 RDEIRQLEKQLEQKDRELEDMEKELdkekkvneqlalrnEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRGE 193
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKAL--------------AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 194 DSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEynrMKALVHQSDAVMDQIKKENEH 273
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE---LKALREALDELRAELTLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 274 YRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEwKLILSSKDDEIIEYQQMLQSLRGKLKNA--QLDADKSNIMALKQGIQ 351
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEEL-SEDIESLAAEIEELEELIEELESELEALlnERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 352 ERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQthymKIHSKVQILEEKTKEAERIAELAEADAREK 431
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE----RLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568967310 432 DKELVEALKRLkdyesGVYGLeDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDE 493
Cdd:TIGR02168 974 LKRLENKIKEL-----GPVNL-AAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE 1029
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
114-452 |
2.31e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 2.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 114 RDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQL----ALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLS 189
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAeryqALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 190 RRGEDSDYRSQLSKKNYELVQYLDEIQTLTEAN--------EKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSD 261
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEqlrvkekiGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 262 AVMDQIKKENEHYRLQVRELTDLLKA-KDEEDDPV--MMAVNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDA 338
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAElKEELEDLRaeLEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 339 DK--SNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKdkgtsnfYQQTHYmKIHSKVQILEEKTKE 416
Cdd:TIGR02169 416 QRlsEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK-------YEQELY-DLKEEYDRVEKELSK 487
|
330 340 350
....*....|....*....|....*....|....*....
gi 568967310 417 AERIAELAEADAR---EKDKELVEALKRLKDYESGVYGL 452
Cdd:TIGR02169 488 LQRELAEAEAQARaseERVRGGRAVEEVLKASIQGVHGT 526
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1779-2445 |
6.11e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 6.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1779 RELKSQIEDLNENLLKLKEALKTSKNKENSL------ADDLNELNNELQKKQKAYnkILREKDGIDQENDELRRQIKRLS 1852
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLerqaekAERYKELKAELRELELAL--LVLRLEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1853 SGLQS-KTLIDNKQSLIDELQKKVKKLESQLERKVDDVDIKpVKEKSSKEELIRweegkKWQTKVEGLRNRLKEKEGEAH 1931
Cdd:TIGR02168 253 EELEElTAELQELEEKLEELRLEVSELEEEIEELQKELYAL-ANEISRLEQQKQ-----ILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1932 GLAKQLNTLKELFAKADKEKLTLQKKLKTtgmtvdqvLGVRALESEKELEELKKKNLDLENDILYMRTQQALPRDSVvED 2011
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELES--------LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI-AS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2012 LHLQNKYLQEKLHTLEKKLSKEKYSQSL----TSEIESDDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQV 2087
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEEllkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2088 KDLKEMCEFLKKGKLELERKLGQVRGAGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMATIEEENRN- 2166
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNa 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2167 LKAELEKLKAHFGRQLSMQFESKNKGTEKIVAENERLRKE------LKKEIEASEKLRIAKNNLeLVNDKMAAQLE---E 2237
Cdd:TIGR02168 558 AKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIegflgvAKDLVKFDPKLRKALSYL-LGGVLVVDDLDnalE 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2238 TGKRLQFAE----------SRAPQLEGADSKSWKSIVVSRV----YETKMKELESDIAKKNQSITDLKQLVREATEREQK 2303
Cdd:TIGR02168 637 LAKKLRPGYrivtldgdlvRPGGVITGGSAKTNSSILERRReieeLEEKIEELEEKIAELEKALAELRKELEELEEELEQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2304 AKKYTEDLEQQIEILKNVPEGAETEQELIRE-LQLLRLANNQMDKERAELIHQIEINKDQTRADSSipDSDQLKEKINDL 2382
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEErIAQLSKELTELEAEIEELEERLEEAEEELAEAEA--EIEELEAQIEQL 794
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568967310 2383 ETQLRKL-----ELEKQHSKEEVKKLKKElenfdpsffEEIEDLKYNYKEEVKKNILLEEKLKKLSEQ 2445
Cdd:TIGR02168 795 KEELKALrealdELRAELTLLNEEAANLR---------ERLESLERRIAATERRLEDLEEQIEELSED 853
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
109-365 |
2.67e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 2.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 109 DTRFLRDEIRQLEKQLEQKDRELEDMEKELDK-EKKVNEQLALRNE------EAENENSKLRRENEQLRQDIIDYQKQID 181
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRiENRLDELSQELSDasrkigEIEKEIEQLEQEEEKLKERLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 182 SQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTL--TEANEKIEVQNQEMRKnLEESVQEMEKMTDEYNRMKALVHQ 259
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSK-LEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 260 SDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDdpvmmavNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLKN--AQLD 337
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL-------NGKKEELEEELEELEAALRDLESRLGDLKKERDEleAQLR 899
|
250 260
....*....|....*....|....*...
gi 568967310 338 ADKSNIMALKQGIQERDSQIKMLTEQVE 365
Cdd:TIGR02169 900 ELERKIEELEAQIEKKRKRLSELKAKLE 927
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
113-722 |
4.36e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 4.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 113 LRDEIRQLEKQLEQKDRELEDMEK--ELDKEKKV--NEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLL 188
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERyrELKEELKEleAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 189 SRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIK 268
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 269 KENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEwkliLSSKDDEIIEYQQMLQSLRGKLKNAQLDADksnimALKQ 348
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE----LLEALRAAAELAAQLEELEEAEEALLERLE-----RLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 349 GIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKgtsnfyqqthymKIHSKVQILEEKTKEAERIAELAEADA 428
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL------------ELLAELLEEAALLEAALAELLEELAEA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 429 REKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTM 508
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 509 ID--LTEFRNSK--RLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAASGLTIDDLNLSETFSHENKIE 584
Cdd:COG1196 570 KAgrATFLPLDKirARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 585 GRKLNFMSLNNMNETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKDSDVKGG 664
Cdd:COG1196 650 TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 568967310 665 ETSLIIPSLERLVNAMESKNAEGIFDasLHLKAQVDQLTGRNEELRQELRqsRKEAVN 722
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEE--LPEPPDLEELERELERLEREIE--ALGPVN 783
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
230-968 |
6.43e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 6.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 230 QEMRKNLEESVQEMEKMTD---EYNR-MKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEE 305
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDilnELERqLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 306 wkliLSSKDDEIIEYQQMLQSLRGKL--KNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKN 383
Cdd:TIGR02168 255 ----LEELTAELQELEEKLEELRLEVseLEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 384 ELQKDKgtsnfyqqthymkihSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCK 463
Cdd:TIGR02168 331 KLDELA---------------EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 464 AQIKirdGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQV-----LLKEIES 538
Cdd:TIGR02168 396 ASLN---NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEealeeLREELEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 539 LEEERLDLKRKIRQMAQE---------------RGKR---NAASGLTIDDLNLSETFSHENKIE-------GRKLNFMSL 593
Cdd:TIGR02168 473 AEQALDAAERELAQLQARldslerlqenlegfsEGVKallKNQSGLSGILGVLSELISVDEGYEaaieaalGGRLQAVVV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 594 NNMNETQSKNEFLSRELAEK--------------EKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEIL---------- 649
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGRvtflpldsikgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddld 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 650 QAIKDMPKdsdvKGGETSLIIPSLERL-----VNAMESKNAEGIFD---ASLHLKAQVDQLTGRNEELRQELRQSRKEAV 721
Cdd:TIGR02168 633 NALELAKK----LRPGYRIVTLDGDLVrpggvITGGSAKTNSSILErrrEIEELEEKIEELEEKIAELEKALAELRKELE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 722 NYSQQLVKANLKIDHLEKETDLLRQSAG-----SNVVYKGIDLPDGIAPSSAYIINSQNEYLIHLLQELDNKEKKLKHLE 796
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLArleaeVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 797 DSLEDYNRKFAVIRHQQSLLYKEY----------LSEKDIWKTDSEMIREEKRKLEDQAEQDAVKVKEYNNLLSALQMDS 866
Cdd:TIGR02168 789 AQIEQLKEELKALREALDELRAELtllneeaanlRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 867 NEMKKMLSENSRKITVLQVNEKSLIRQYTTLVEMERHLRKENGKHRNDVIameaEVTEKLGSLQRFKEMAIFKIAALQKV 946
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE----ELREKLAQLELRLEGLEVRIDNLQER 944
|
810 820
....*....|....*....|..
gi 568967310 947 IDNSVSLsELELANKQYNELTT 968
Cdd:TIGR02168 945 LSEEYSL-TLEEAEALENKIED 965
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-459 |
6.65e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 6.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 75 KAGEEQAKFENQLKTKVMKLENELEMAQQsaggrDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEE 154
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEE-----ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 155 AENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRK 234
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 235 NLEESVQEMEKMTDEynrmkalvhqsdavMDQIKKENEHYRLQVRELTDLLKAKDEEddpvMMAVNAKVEEWKLILSSKD 314
Cdd:TIGR02168 839 RLEDLEEQIEELSED--------------IESLAAEIEELEELIEELESELEALLNE----RASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 315 DEIIEYQQMLQSLRGKLKNAQLDADKSNiMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKdkgtsnf 394
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLE-LRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR------- 972
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568967310 395 yqqthymkihsKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEI 459
Cdd:TIGR02168 973 -----------RLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1635-2395 |
7.23e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 7.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1635 LTKLKKVSKDLEKQKEitelkvrefentKLRLQETHASEVKKVKAEVEDLRHALAQAHKdsQSLKSELQAQKEAnsrapt 1714
Cdd:TIGR02168 188 LDRLEDILNELERQLK------------SLERQAEKAERYKELKAELRELELALLVLRL--EELREELEELQEE------ 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1715 ttmrnlVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANlNVQQVVERHTRELKSQIEDLNENLLK 1794
Cdd:TIGR02168 248 ------LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA-NEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1795 LKEALKTSKNKENSLADDLNELNNELQKKQKaynkilrEKDGIDQENDELRRQIKRLSSGLQSK-TLIDNKQSLIDELQK 1873
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKE-------ELESLEAELEELEAELEELESRLEELeEQLETLRSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1874 KVKKLESQLERKVDDVDIKPVKEKSSKEElIRWEEGKKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLT 1953
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQE-IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1954 LQKKLKTTGMTVDQvLGVRALESEKELEELKKKNLDLENdILYMRTQQALPRDSVVEDLHLQNKYLQEKLHTLEKKLske 2033
Cdd:TIGR02168 473 AEQALDAAERELAQ-LQARLDSLERLQENLEGFSEGVKA-LLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRL--- 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2034 kysQSLTseIESDDHCQKEQELQKENLKLSSENIELkfqleqankdlprlknqvkDLKEMCEFLKKGKLELERKLGQVRG 2113
Cdd:TIGR02168 548 ---QAVV--VENLNAAKKAIAFLKQNELGRVTFLPL-------------------DSIKGTEIQGNDREILKNIEGFLGV 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2114 AGRSGKTIPELEKTIGLM---KKVVEKVQRENEQLKKasgiltsekmatIEEENRNLKAELEKLKAHFgrQLSMQFESKN 2190
Cdd:TIGR02168 604 AKDLVKFDPKLRKALSYLlggVLVVDDLDNALELAKK------------LRPGYRIVTLDGDLVRPGG--VITGGSAKTN 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2191 KGTEKIVAENERLRKELKkeiEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYE 2270
Cdd:TIGR02168 670 SSILERRREIEELEEKIE---ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2271 TKMKELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILKNVPEGAETE--------QELIRELQLLRLAN 2342
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldelraelTLLNEEAANLRERL 826
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 568967310 2343 NQMDKERAELIHQIEINKDQTRADSSipDSDQLKEKINDLETQLRKLELEKQH 2395
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSE--DIESLAAEIEELEELIEELESELEA 877
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1473-2335 |
7.48e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 7.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1473 EKLKEKESALRLAEQNILSRDKVINELRLRLPaTADREKLIAELERKELEPKSHHTMKIAHQTIANMQARLNHKEEVLKK 1552
Cdd:TIGR02168 172 ERRKETERKLERTRENLDRLEDILNELERQLK-SLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1553 YQHLLEKAREEQREIVKKHEEdLHVLHHKLEQQAdnslnkfrQTAQDLLKQspapvptnkHFIRLAEMEQTVAEQDDSLS 1632
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEE-LRLEVSELEEEI--------EELQKELYA---------LANEISRLEQQKQILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1633 SLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQEthasevkkVKAEVEDLRHALAQAHKDSQSLKSELQAQKEAnsra 1712
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEE--------LKEELESLEAELEELEAELEELESRLEELEEQ---- 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1713 ptttmrnlVDRLKSQLALKEKQQKALSRALLELRSEMTAAAE--ERIIAVTSQKEANLNVQQVVERHTR---------EL 1781
Cdd:TIGR02168 381 --------LETLRSKVAQLELQIASLNNEIERLEARLERLEDrrERLQQEIEELLKKLEEAELKELQAEleeleeeleEL 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1782 KSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNE---LQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQ-- 1856
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARldsLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvd 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1857 -------SKTLIDNKQSLIDELQKKVKK-LESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEG 1928
Cdd:TIGR02168 533 egyeaaiEAALGGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDP 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1929 EAHG--------------LAKQLNTLKEL-----------------------FAKADKEKLTLQKKLKTTGMTVDQvLGV 1971
Cdd:TIGR02168 613 KLRKalsyllggvlvvddLDNALELAKKLrpgyrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIEE-LEE 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1972 RALESEKELEELKKKNLDLENDilymrtqqalprdsvVEDLHLQNKYLQEKLHTLEKKLSK-EKYSQSLTSEIESDDHCQ 2050
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEE---------------LEQLRKELEELSRQISALRKDLARlEAEVEQLEERIAQLSKEL 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2051 KEQELQKEnlKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRG-AGRSGKTIPELEKTIG 2129
Cdd:TIGR02168 757 TELEAEIE--ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeAANLRERLESLERRIA 834
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2130 LMKKVVEKVQRENEQLKKASGILTSEkMATIEEENRNLKAELEKLKAHFgRQLSMQFESKNKGTEKIVAENERLRKELKK 2209
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAE-IEELEELIEELESELEALLNER-ASLEEALALLRSELEELSEELRELESKRSE 912
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2210 EIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGAdskswksivVSRVYETKMKELESDIAKKNQSITD 2289
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA---------LENKIEDDEEEARRRLKRLENKIKE 983
|
890 900 910 920
....*....|....*....|....*....|....*....|....*.
gi 568967310 2290 LKQLVREATEREQKAKKYTEDLEQQIEILKnvpEGAETEQELIREL 2335
Cdd:TIGR02168 984 LGPVNLAAIEEYEELKERYDFLTAQKEDLT---EAKETLEEAIEEI 1026
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1732-2380 |
1.31e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1732 EKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQvvERHTRELKSQIEDLNENLLKLKEALKTS-----KNKE 1806
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE--ARKADELKKAEEKKKADEAKKAEEKKKAdeakkKAEE 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1807 NSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSliDELQKKVKKLESQLE--R 1884
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK--EEAKKKADAAKKKAEekK 1391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1885 KVDDVDIKPVKEKSSKEELIRWEEGKKwqtkveglrnrlkeKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKLKTTGMT 1964
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKK--------------KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1965 VDQVLGVRALESEKELEELKKKNLDLENDILYMRTQQALPRDSVVEDLHLQNKYLQEKLHTLEKKLSKE---KYSQSLTS 2041
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEakkAEEAKKAD 1537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2042 EIESDDHCQKEQELQK-ENLKLSSE--NIELKFQLEQANKDLPRLKNQVKDLKE--MCEFLKKGKLELERKLGQVRGAGR 2116
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKaEELKKAEEkkKAEEAKKAEEDKNMALRKAEEAKKAEEarIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2117 SGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMATIEEENRNLKAELEKLKAhfgRQLSMQFESKNKGTEKI 2196
Cdd:PTZ00121 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA---EEAKKAEEDEKKAAEAL 1694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2197 VAENERLRK-ELKKEIEASEKlriaknnlelvndKMAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYETKMKE 2275
Cdd:PTZ00121 1695 KKEAEEAKKaEELKKKEAEEK-------------KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2276 LESDIAKKNQSITDLKQLV------REATEREQKAKKYTEDLEQQIEIL-----KNVPEGAETEQELIRELQLLRLANNq 2344
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVieeeldEEDEKRRMEVDKKIKDIFDNFANIieggkEGNLVINDSKEMEDSAIKEVADSKN- 1840
|
650 660 670
....*....|....*....|....*....|....*.
gi 568967310 2345 MDKERAELIHQIEINKDQTRADSSIPDSDQLKEKIN 2380
Cdd:PTZ00121 1841 MQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDL 1876
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
54-187 |
1.66e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 53.32 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 54 ITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfLRDEIRQLEKQLEQKDRELED 133
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVER------------LEAEVEELEAELEEKDERIER 445
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568967310 134 MEKELDKEKKVNEQLALRNEEAenenSKLRRENEQLRQDIIDYQKQIDSQKESL 187
Cdd:COG2433 446 LERELSEARSEERREIRKDREI----SRLDREIERLERELEEERERIEELKRKL 495
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1344-1884 |
1.69e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1344 KIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQREVELERQLDIFDHQQNEIL 1423
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1424 SAAQKFEDSTGSMpdpslplpNQLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRL 1503
Cdd:COG1196 348 EAEEELEEAEAEL--------AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1504 PATADREKLIAELERKELEPKSHHTMKIAHQTIANMQARLNHKEEVLKKYQhlLEKAREEQREIVKKHEEDLHVLHHKLE 1583
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE--EAALLEAALAELLEELAEAAARLLLLL 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1584 QQADNSLNKFRQTAQDLLKQSPAPVPtnKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKvrefENTK 1663
Cdd:COG1196 498 EAEADYEGFLEGVKAALLLAGLRGLA--GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLK----AAKA 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1664 LRLQETHASEVKKVKAEVEDlrHALAQAHKDSQSLKSELQAQKEANSRAPTTTMRNLVDRLKSQLALKEKqqKALSRALL 1743
Cdd:COG1196 572 GRATFLPLDKIRARAALAAA--LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA--VTLAGRLR 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1744 ELRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKK 1823
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568967310 1824 QKAYNKILREKDGIDQENDELRRQIKRLSSGLQSktlidnkqslIDELQKKVKKLESQLER 1884
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPD----------LEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
961-1851 |
1.78e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 961 KQYNELTTKYRDiLQKDNMLVQRTSNLEHLEcenaSLKEQMEAISKELEITKEKLHTIEQAWEqETKLGnDSNMDKAKKS 1040
Cdd:TIGR02168 213 ERYKELKAELRE-LELALLVLRLEELREELE----ELQEELKEAEEELEELTAELQELEEKLE-ELRLE-VSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1041 MTnSDIVSISKKITVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFTELTKINLDAQKVEQMLRDELadsv 1120
Cdd:TIGR02168 286 LQ-KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL---- 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1121 tkavsDADRQRILELEKSEVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESL---RTQLLDFQAQSDEKALIAKL 1197
Cdd:TIGR02168 361 -----EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLedrRERLQQEIEELLKKLEEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1198 HQHVVSLQISEATalgkLESVTSKLQKMEAYNLRLEQKLDEKEQALYYARlEGRNRAKHLRQTIQSLRRQFSG-----AL 1272
Cdd:TIGR02168 436 KELQAELEELEEE----LEELQEELERLEEALEELREELEEAEQALDAAE-RELAQLQARLDSLERLQENLEGfsegvKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1273 PLAQQEKFSKTMIQLQnDKLKIMQE----MKNSQQEHRN---MENKTlelelklkGLEELISTLKDARGAQKVINWHVKI 1345
Cdd:TIGR02168 511 LLKNQSGLSGILGVLS-ELISVDEGyeaaIEAALGGRLQavvVENLN--------AAKKAIAFLKQNELGRVTFLPLDSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1346 EELRLQelKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQReveleRQLDifdhQQNEILSA 1425
Cdd:TIGR02168 582 KGTEIQ--GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELA-----KKLR----PGYRIVTL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1426 AQKFEDSTGSMPDPSLPLPNQLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLpa 1505
Cdd:TIGR02168 651 DGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI-- 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1506 tADREKLIAELERKelepkshhtmkiaHQTIANMQARLNHKEEVLKKYQHLLEKAREEQREIVKKHEEDLhvlhHKLEQQ 1585
Cdd:TIGR02168 729 -SALRKDLARLEAE-------------VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI----EELEAQ 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1586 ADNSLNKFRQTAQDLLKQSPAPVPTNKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFEntklR 1665
Cdd:TIGR02168 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE----E 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1666 LQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEANSRAptttmRNLVDRLKSQLA-LKEKQQKALSRaLLE 1744
Cdd:TIGR02168 867 LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL-----RRELEELREKLAqLELRLEGLEVR-IDN 940
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1745 LRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNE-NLLKLKEALKTSKNKENSLA--DDLNELNNELQ 1821
Cdd:TIGR02168 941 LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPvNLAAIEEYEELKERYDFLTAqkEDLTEAKETLE 1020
|
890 900 910
....*....|....*....|....*....|..
gi 568967310 1822 KKQKAYNKILRE--KDGIDQENDELRRQIKRL 1851
Cdd:TIGR02168 1021 EAIEEIDREARErfKDTFDQVNENFQRVFPKL 1052
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1629-1881 |
2.06e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.38 E-value: 2.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1629 DSLSSLLTKLKKvSKDLEKQKEITelkVREFENTKLRLQEThasevKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEA 1708
Cdd:PRK11281 39 ADVQAQLDALNK-QKLLEAEDKLV---QQDLEQTLALLDKI-----DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1709 NSRAPTTTMRNL-VDRLKSQLALKEKQQKALSRALLELRSEMTAA--AEERiiavtSQKEANLNVQQvverhTRELKSQI 1785
Cdd:PRK11281 110 NDEETRETLSTLsLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLqtQPER-----AQAALYANSQR-----LQQIRNLL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1786 EDLNENLLKLKEALKTSKNKENSLADdlneLNNELQKKQKAYNKILreKDGIDQENDELRRQIKRLSSGLQS-KTLIDNK 1864
Cdd:PRK11281 180 KGGKVGGKALRPSQRVLLQAEQALLN----AQNDLQRKSLEGNTQL--QDLLQKQRDYLTARIQRLEHQLQLlQEAINSK 253
|
250
....*....|....*..
gi 568967310 1865 QslIDELQKKVKKLESQ 1881
Cdd:PRK11281 254 R--LTLSEKTVQEAQSQ 268
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1617-2393 |
2.43e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1617 LAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITEL--KVREFENTKL--RLQETHAS-------------EVKKVKA 1679
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALlkEKREYEGYELlkEKEALERQkeaierqlasleeELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1680 EVEDLRHALAQAHKDSQSLKSELQAQKEANSRAPTTTMRNL---VDRLKSQLALKEKQQKALSRALLELRSEMTAAAEER 1756
Cdd:TIGR02169 259 EISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELeaeIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1757 IIAVTSQKEANLNVQQVVERHtRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDG 1836
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEY-AELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1837 IDQENDELRRQIKRLSSGLqsKTLIDNKQSLIDE----------LQKKVKKLESQLERKVDDVDIKPVKEKSSKEELIRW 1906
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKI--NELEEEKEDKALEikkqewkleqLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1907 E-EGKKWQTKVEGLRNR---LKEKEGEAHGLAKQLNTLKELFAKA-------------------DKEKLTLQKKLKTTGM 1963
Cdd:TIGR02169 496 EaQARASEERVRGGRAVeevLKASIQGVHGTVAQLGSVGERYATAievaagnrlnnvvveddavAKEAIELLKRRKAGRA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1964 TVDQVLGVRALESEKELEELKKKNLDLENDILYMRT-----QQALPRDSVVEDLHLQNKYL-QEKLHTLEKKLSKEkySQ 2037
Cdd:TIGR02169 576 TFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKyepafKYVFGDTLVVEDIEAARRLMgKYRMVTLEGELFEK--SG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2038 SLTSEIESDDHCQKEQELQKENLKLSSENIE-LKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRG-AG 2115
Cdd:TIGR02169 654 AMTGGSRAPRGGILFSRSEPAELQRLRERLEgLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQeEE 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2116 RSGKTIPELEKTIGLMKKVVEKVQRENEQLKKasgiltseKMATIEEENRNLKAELEKLKAHFGRQLSMQFESKNKGTEK 2195
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEA--------RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEE 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2196 IVAENERLRKELKKEIEAS----EKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEgadskswksivvsrvyeT 2271
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLtlekEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE-----------------E 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2272 KMKELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILK-NVPEGAETEQELIRELQLLRLANNQMDKERA 2350
Cdd:TIGR02169 869 ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRkRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 568967310 2351 EL--IHQIEINKDQTRADSS---------IPDSDQLKEKINDLETQLRKLELEK 2393
Cdd:TIGR02169 949 EElsLEDVQAELQRVEEEIRalepvnmlaIQEYEEVLKRLDELKEKRAKLEEER 1002
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
782-1690 |
3.50e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 3.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 782 LQELDNKEKKLKHLEDSLEDYNRKFAVIRHQ--QSLLYKEYLSE-----KDIWKTDSEMIREEKRKLEDQAEQDAVKVKE 854
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQaeKAERYKELKAElreleLALLVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 855 YNNLLSALQMDSNEMKKMLSENSRKITVLQVNEKSLIRQYTTLVEMERHLRKEngkhRNDVIAMEAEVTEKLGSLQRFKE 934
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER----LANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 935 MAIFKIAALQKVIDnsVSLSELELANKQYNELTTKYRDILQKdnmLVQRTSNLEHLECENASLKEQMEAISKELEITKEK 1014
Cdd:TIGR02168 334 ELAEELAELEEKLE--ELKEELESLEAELEELEAELEELESR---LEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1015 LHTIEQAWE--QETKLGNDSNMDKAKKSMTNSDIVSISKKITVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELE 1092
Cdd:TIGR02168 409 LERLEDRRErlQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1093 TKFTELTKINLDAQKVEQMLRDELADsvtKAVSDADRQRILELEKSEVELKVEVSK---------LREISDIAKRQVDFL 1163
Cdd:TIGR02168 489 ARLDSLERLQENLEGFSEGVKALLKN---QSGLSGILGVLSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1164 nsqqqsreKEVESLRTQLLDFQAQSDekALIAKLHQHVVSLQISEATALGKLESVTSKLQKMEAYNLRLEQKLDEKEQAL 1243
Cdd:TIGR02168 566 --------KQNELGRVTFLPLDSIKG--TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNAL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1244 YYARLEGRnrakhlRQTIQSLRRQFSGALPLAQQEKFSKTMIQLQNDklkimQEMKNSQQEHRNMENKTLELELKLKGLE 1323
Cdd:TIGR02168 636 ELAKKLRP------GYRIVTLDGDLVRPGGVITGGSAKTNSSILERR-----REIEELEEKIEELEEKIAELEKALAELR 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1324 ELISTLKDArgaqkvinwhvkIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQ 1403
Cdd:TIGR02168 705 KELEELEEE------------LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1404 REVELERQLDIFDHQQNEIlsaaqkfedstgsmpdpslplpNQLEIALRKIKENIQvilKTQATCKSLEEKLKEKESALR 1483
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQI----------------------EQLKEELKALREALD---ELRAELTLLNEEAANLRERLE 827
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1484 LAEQNILSRDKVINELRLRLP-ATADREKLIAELERKELEPKSHhtmkiaHQTIANMQARLNHKEEVLKKYQHLLEKARE 1562
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEeLSEDIESLAAEIEELEELIEEL------ESELEALLNERASLEEALALLRSELEELSE 901
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1563 EQREI---VKKHEEDLHVLHHKLEqQADNSLNKFRQTAQDLLKQSpapvpTNKHFIRLAEMEQTVAEQDDSLSSLLTKLK 1639
Cdd:TIGR02168 902 ELRELeskRSELRRELEELREKLA-QLELRLEGLEVRIDNLQERL-----SEEYSLTLEEAEALENKIEDDEEEARRRLK 975
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|.
gi 568967310 1640 KVSKDLEKQKEITELKVREFENTKLRLQEthasevkkVKAEVEDLRHALAQ 1690
Cdd:TIGR02168 976 RLENKIKELGPVNLAAIEEYEELKERYDF--------LTAQKEDLTEAKET 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
79-379 |
3.74e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 3.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 79 EQAKFENQLKTKVMKLENELEMAQQSAGGRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENE 158
Cdd:TIGR02169 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 159 NSKLRRENEQLRQDIIdyQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEE 238
Cdd:TIGR02169 781 LNDLEARLSHSRIPEI--QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 239 SVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELT---DLLKAKDEEDDPVMMAVNAKVEEWKLILSSKDD 315
Cdd:TIGR02169 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELErkiEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568967310 316 ---EIIEYQQMLQSLrGKLKnAQLDADKSNIMALK----QGIQERDSQIKMLTEQVEQYTKEMEKNTFIIE 379
Cdd:TIGR02169 939 pkgEDEEIPEEELSL-EDVQ-AELQRVEEEIRALEpvnmLAIQEYEEVLKRLDELKEKRAKLEEERKAILE 1007
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1724-2390 |
1.09e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1724 LKSQLALKEKQQKALSRALlELRSEmtaaAEERiiavtsQKEANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSK 1803
Cdd:COG1196 198 LERQLEPLERQAEKAERYR-ELKEE----LKEL------EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1804 NKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLssglqsktlidnkQSLIDELQKKVKKLESQLE 1883
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL-------------EERLEELEEELAELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1884 RKvddvdikpvkekssKEELIRWEEgkkwqtkveglrnRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKklkttgm 1963
Cdd:COG1196 334 EL--------------EEELEELEE-------------ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE------- 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1964 tvdqvlgvRALESEKELEELKKKNLDLENDILYMRTQQAlprdsvvEDLHLQNKYLQEKlhtlekklsKEKYSQSLTSEI 2043
Cdd:COG1196 380 --------ELEELAEELLEALRAAAELAAQLEELEEAEE-------ALLERLERLEEEL---------EELEEALAELEE 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2044 ESDDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRGAGRSGKTIPE 2123
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2124 LEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMATIEEENRNLKAELEKLKAHFGRQLSmqFESKNKGTEKIVAENERL 2203
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT--FLPLDKIRARAALAAALA 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2204 RKELKKEIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKswKSIVVSRVYETKMKELESDIAKK 2283
Cdd:COG1196 594 RGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE--VTLEGEGGSAGGSLTGGSRRELL 671
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2284 NQSITDLKQLVREATEREQKAKKYTEDLEQQIEILKnvpEGAETEQELIRELQLLRLANNQMDKERAELIHQIEINKDQT 2363
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEER---ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
650 660 670
....*....|....*....|....*....|..
gi 568967310 2364 RAD-----SSIPDSDQLKEKINDLETQLRKLE 2390
Cdd:COG1196 749 EEEaleelPEPPDLEELERELERLEREIEALG 780
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1552-1956 |
1.21e-05 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 50.53 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1552 KYQHLLEKAREEQREIVKKHEEDLHVLHHKLEQQADnslnKFRQTAQDLLKQSPAPVPTNKHFIRLAEMEQTVA------ 1625
Cdd:pfam09731 31 NFRDFFEEYIPYGEEVVLYALGEDPPLAPKPKTFRP----LQPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEvaeeek 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1626 -EQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQA 1704
Cdd:pfam09731 107 eATKDAAEAKAQLPKSEQEKEKALEEVLKEAISKAESATAVAKEAKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1705 QKEANSRAPTTTM----RNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQVVerhtRE 1780
Cdd:pfam09731 187 KAEALAEKLKEVInlakQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIVFQ----QE 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1781 LKSQIEDLNENLlklKEALKTSKNKENSLAD----DLNELNNELQKKQKAYNKilREKDGIDQENDELRRQIKRLSSGLQ 1856
Cdd:pfam09731 263 LVSIFPDIIPVL---KEDNLLSNDDLNSLIAhahrEIDQLSKKLAELKKREEK--HIERALEKQKEELDKLAEELSARLE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1857 SKTLIDNKQsLIDELQKKV--------KKLESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEG 1928
Cdd:pfam09731 338 EVRAADEAQ-LRLEFEREReeiresyeEKLRTELERQAEAHEEHLKDVLVEQEIELQREFLQDIKEKVEEERAGRLLKLN 416
|
410 420
....*....|....*....|....*...
gi 568967310 1929 EAHGLAKQLNTLKELFAKADKEKLTLQK 1956
Cdd:pfam09731 417 ELLANLKGLEKATSSHSEVEDENRKAQQ 444
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
429-650 |
1.49e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.31 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 429 REKDKELVEALkrlkdYESGVYGLEDAVIEIKNckaqikirdgemEVLTKEINKLeMKINDILDENEALRERAGLEPKTM 508
Cdd:PRK05771 15 KSYKDEVLEAL-----HELGVVHIEDLKEELSN------------ERLRKLRSLL-TKLSEALDKLRSYLPKLNPLREEK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 509 IDLTEFRNSKRLKQQQYRAENqvLLKEIESLEEERLDLKRKIRQMAQERG--KRNAASGLTIDDLNLSETFS------HE 580
Cdd:PRK05771 77 KKVSVKSLEELIKDVEEELEK--IEKEIKELEEEISELENEIKELEQEIErlEPWGNFDLDLSLLLGFKYVSvfvgtvPE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 581 NKIEGRKLNFMSLNNMNETQSKN-------------EFLSRELAE---KEKDLERSRT---VIAKFQSKLKELVEENKQL 641
Cdd:PRK05771 155 DKLEELKLESDVENVEYISTDKGyvyvvvvvlkelsDEVEEELKKlgfERLELEEEGTpseLIREIKEELEEIEKERESL 234
|
....*....
gi 568967310 642 EEGMKEILQ 650
Cdd:PRK05771 235 LEELKELAK 243
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
113-556 |
1.78e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 113 LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRG 192
Cdd:PRK02224 277 LAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 193 EDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDeynrmkalvhqsdavmdqikkene 272
Cdd:PRK02224 357 RAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED------------------------ 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 273 hyrlqvrELTDLLKAKDEeddpvmmaVNAKVEEWKLILSSKDDEIIEYQQMLQSlrGKLKNAQLDADKSNIMAlkqGIQE 352
Cdd:PRK02224 413 -------FLEELREERDE--------LREREAELEATLRTARERVEEAEALLEA--GKCPECGQPVEGSPHVE---TIEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 353 RDSQIKMLTEQVEQYTKEmekntfiIEDLKNELQKDKGTSnfyqqthymKIHSKVQILEEKTKEAERIAELAEADAREKD 432
Cdd:PRK02224 473 DRERVEELEAELEDLEEE-------VEEVEERLERAEDLV---------EAEDRIERLEERREDLEELIAERRETIEEKR 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 433 KELVEALKRLKDYESGVYGLEDAV----IEIKNCKAQIKIRDGEMEVLTKEINKLEmKINDILDENEALRERAGLEPKTM 508
Cdd:PRK02224 537 ERAEELRERAAELEAEAEEKREAAaeaeEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKR 615
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568967310 509 IDLTEFRNSKRLKQQQYRAENQVLLkeiESLEEERLDLKRKIRQMAQE 556
Cdd:PRK02224 616 EALAELNDERRERLAEKRERKRELE---AEFDEARIEEAREDKERAEE 660
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1362-2253 |
2.47e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1362 GKEEIKylnNIISEYEHTINSLEEEIVQQSKFHEERQMAWDQREVELERQLDIFDHQQNEILSAAQKFEDSTGSmpdpsl 1441
Cdd:pfam15921 72 GKEHIE---RVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQED------ 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1442 pLPNQLEIALRKIKeniqvilktqaTCKSL-EEKLKEKESALRLAEQNILSRDKVINELRLRLP--ATADREKL-----I 1513
Cdd:pfam15921 143 -LRNQLQNTVHELE-----------AAKCLkEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVdfEEASGKKIyehdsM 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1514 AELERKELEPKSHHTMKIAHQTIANMQARLNHKEEVLK--------KYQHLLEKAREEQREIVKKHEEDLHVLHHKlEQQ 1585
Cdd:pfam15921 211 STMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEalksesqnKIELLLQQHQDRIEQLISEHEVEITGLTEK-ASS 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1586 ADNSLNKFRqtAQDLLKQSPAPVPTNKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITelkvrefeNTKLR 1665
Cdd:pfam15921 290 ARSQANSIQ--SQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLA--------NSELT 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1666 LQETHASEVKKVKAEVED-LRHALAQAHKDSQslksELQAQKEANSRAPTTTMRN--LVDRLKSQLALKEKQQKALSRAL 1742
Cdd:pfam15921 360 EARTERDQFSQESGNLDDqLQKLLADLHKREK----ELSLEKEQNKRLWDRDTGNsiTIDHLRRELDDRNMEVQRLEALL 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1743 LELRSEMTAAAEERIIAVTSQKEANLNVQQvverhtreLKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQK 1822
Cdd:pfam15921 436 KAMKSECQGQMERQMAAIQGKNESLEKVSS--------LTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1823 KQKAynkilrekdgidqendelrrqikrlssglqsktlidnkqslIDELQKKVKKLESQLerkvdDVDIKPVKEKSSKEE 1902
Cdd:pfam15921 508 KERA-----------------------------------------IEATNAEITKLRSRV-----DLKLQELQHLKNEGD 541
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1903 LIRweegkKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADK-------EKLTLQKKLKTTGMTVdQVLGVRALE 1975
Cdd:pfam15921 542 HLR-----NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRtagamqvEKAQLEKEINDRRLEL-QEFKILKDK 615
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1976 SEKELEELKKKNLDLENDILYMrTQQALPRDSVVEDLHLQNKYLQEKLHTLEKKLSkekysqSLTseiesddhcqKEQEL 2055
Cdd:pfam15921 616 KDAKIRELEARVSDLELEKVKL-VNAGSERLRAVKDIKQERDQLLNEVKTSRNELN------SLS----------EDYEV 678
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2056 QKENLKLSSENIE-----LKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRGagrsgkTIPELEKTIGL 2130
Cdd:pfam15921 679 LKRNFRNKSEEMEtttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRG------QIDALQSKIQF 752
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2131 MKKVVEKVQRENEQLKKASGILtSEKMATIEEENRNLKAELEKLKAhfgrqlsmqfesknkgtekivaENERLRKELKke 2210
Cdd:pfam15921 753 LEEAMTNANKEKHFLKEEKNKL-SQELSTVATEKNKMAGELEVLRS----------------------QERRLKEKVA-- 807
|
890 900 910 920
....*....|....*....|....*....|....*....|...
gi 568967310 2211 ieaseklriaknNLELVNDKMAAQLEETGKRLQFAESRAPQLE 2253
Cdd:pfam15921 808 ------------NMEVALDKASLQFAECQDIIQRQEQESVRLK 838
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
78-662 |
2.49e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 78 EEQAKFENQLKTKVMKLENELEMAQQSAGGRDTRF--LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEA 155
Cdd:TIGR02169 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFaeTRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 156 ENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLT------EANEKIEVQN 229
Cdd:TIGR02169 426 NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQrelaeaEAQARASEER 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 230 QEMRKNLEE-----------SVQEMEKMTDEY---------NRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKD 289
Cdd:TIGR02169 506 VRGGRAVEEvlkasiqgvhgTVAQLGSVGERYataievaagNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRD 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 290 EEDDPVMMAVNAKVeEWKLILSSKDDE-------------IIEYQQMLQSLRGKLKNAQLDAD---KSNIM-----ALKQ 348
Cdd:TIGR02169 586 ERRDLSILSEDGVI-GFAVDLVEFDPKyepafkyvfgdtlVVEDIEAARRLMGKYRMVTLEGElfeKSGAMtggsrAPRG 664
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 349 GIqerdSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQthymkihsKVQILEEKTKEAERIAELAEADa 428
Cdd:TIGR02169 665 GI----LFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQ--------ELSDASRKIGEIEKEIEQLEQE- 731
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 429 REKDKELVEALKRLKDYESgvygledavIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDIldENEALRERAGLEPKTM 508
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLE---------QEIENVKSELKELEARIEELEEDLHKLEEALNDL--EARLSHSRIPEIQAEL 800
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 509 IDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMA---QERGKRNAASGLTIDDLN--LSETFSHENKI 583
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKeqiKSIEKEIENLNGKKEELEeeLEELEAALRDL 880
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568967310 584 EGRKLNFMSlnNMNETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKDSDVK 662
Cdd:TIGR02169 881 ESRLGDLKK--ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ 957
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
985-1522 |
3.03e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 985 SNLEHLEcENASLKEQMEAISKELEITK--EKLHTIEQAWEQETKLGNDSNMDKAKKSMTNSDIVSISKKITVLEMKELN 1062
Cdd:COG1196 200 RQLEPLE-RQAEKAERYRELKEELKELEaeLLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1063 ERQRAEHCQKMYEHLRTSLKQME-------ERNFELETKFTELTKINLDAQKVEQMLRDELADSVTKAVSDADRQRILEL 1135
Cdd:COG1196 279 LELELEEAQAEEYELLAELARLEqdiarleERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1136 EKSEVELKvEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKALIAKLHQHVVSLQISEATALGKL 1215
Cdd:COG1196 359 ELAEAEEA-LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1216 ESVTSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRqfsgalpLAQQEKFSKTMIQLQNDKLKIM 1295
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE-------AAARLLLLLEAEADYEGFLEGV 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1296 QEMKNSQQ---------EHRNMENKTLELELKLKGLEELISTLKDARGAQKVINWHVKIEELRLQELKLNRELVKGKEEI 1366
Cdd:COG1196 511 KAALLLAGlrglagavaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAA 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1367 KYLNNIISEYEHTINSLEEEivqqskfHEERQMAWDQREVELERQLDIFDHQQNEILSAAQKFEDSTGSMPDpSLPLPNQ 1446
Cdd:COG1196 591 ALARGAIGAAVDLVASDLRE-------ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG-GSAGGSL 662
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568967310 1447 LEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELE 1522
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1542-2390 |
3.21e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 3.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1542 RLNHKEEVLKKYQHLLEKARE-EQREIVKKHEEdlhvlHHKLEQQADNSLNKFRQTAQDLLKQSPApvpTNKHFIRLAEM 1620
Cdd:TIGR02169 202 RLRREREKAERYQALLKEKREyEGYELLKEKEA-----LERQKEAIERQLASLEEELEKLTEEISE---LEKRLEEIEQL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1621 EQTVAEQDDSLSS-----LLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHaSEVKKVKAEVEDLRHALAQAHKDS 1695
Cdd:TIGR02169 274 LEELNKKIKDLGEeeqlrVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE-AEIDKLLAEIEELEREIEEERKRR 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1696 QSLKSELQAQKEAnsraptttmrnlVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERiiavtsqkeanlnvqqvve 1775
Cdd:TIGR02169 353 DKLTEEYAELKEE------------LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI------------------- 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1776 rhtRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLssgl 1855
Cdd:TIGR02169 402 ---NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL---- 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1856 qsktlidnkQSLIDELQKKVKKLESQLERKvddvdikpvkeKSSKEELIRWEEGKKWQTKVeglrnrLKEKEGEAHGLAK 1935
Cdd:TIGR02169 475 ---------KEEYDRVEKELSKLQRELAEA-----------EAQARASEERVRGGRAVEEV------LKASIQGVHGTVA 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1936 QLNTLKELFAKA-------------------DKEKLTLQKKLKTTGMTVDQVLGVRALESEKELEELKKKNLDLENDILY 1996
Cdd:TIGR02169 529 QLGSVGERYATAievaagnrlnnvvveddavAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEF 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1997 MRT-----QQALPRDSVVEDLHLQNKYL-QEKLHTLEKKLSKEkySQSLTSEIESDDHCQKEQELQKENLKLSSENIE-L 2069
Cdd:TIGR02169 609 DPKyepafKYVFGDTLVVEDIEAARRLMgKYRMVTLEGELFEK--SGAMTGGSRAPRGGILFSRSEPAELQRLRERLEgL 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2070 KFQLEQANKDLPRLKNQVKDLKEMCEflkkgklELERKLGqvrgagrsgktipELEKTIGLMKKVVEKVQRENEQLKkas 2149
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELS-------DASRKIG-------------EIEKEIEQLEQEEEKLKERLEELE--- 743
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2150 giltsEKMATIEEENRNLKAELEKLKAhfgrQLSMQFESKNKGTEKIVAENERLRKELKKEIEAS-EKLRIAKNNLELVN 2228
Cdd:TIGR02169 744 -----EDLSSLEQEIENVKSELKELEA----RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElSKLEEEVSRIEARL 814
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2229 DKMAAQLEETGKRLQFAESRAPQLEgADSKSWKSIVVSRvyETKMKELESDIAKKNQSITDLKQLVREATEREQKAKKYT 2308
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQ-EQRIDLKEQIKSI--EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2309 EDLEQQIEILKNVPEGAETEQELIRELQLLRLANNQMDKERaelIHQIEINKDQTRADSS-IPDSDQLKEKINDLETQLR 2387
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE---LSEIEDPKGEDEEIPEeELSLEDVQAELQRVEEEIR 968
|
...
gi 568967310 2388 KLE 2390
Cdd:TIGR02169 969 ALE 971
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1059-1884 |
3.49e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 3.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1059 KELNERQRAEHCQKMYehLRTSLkqmeernFELETKFTELtkinldaqkveQMLRDELADsVTKAVSDADRQRILELEKS 1138
Cdd:pfam15921 92 RRLNESNELHEKQKFY--LRQSV-------IDLQTKLQEM-----------QMERDAMAD-IRRRESQSQEDLRNQLQNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1139 EVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKaliakLHQHVvSLQISEATALGKleSV 1218
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK-----IYEHD-SMSTMHFRSLGS--AI 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1219 TSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRQF--------SGALPLAQQEKFSKTMIQLQnd 1290
Cdd:pfam15921 223 SKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLiseheveiTGLTEKASSARSQANSIQSQ-- 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1291 kLKIMQEmknsqqehrNMENKTLELELKLKGLEELISTLK-DARGAQKVinWHVKIEELRLQELKLNRELVKGKEEIKYL 1369
Cdd:pfam15921 301 -LEIIQE---------QARNQNSMYMRQLSDLESTVSQLRsELREAKRM--YEDKIEELEKQLVLANSELTEARTERDQF 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1370 N----NIISEYEHTINSLEEEIVQQSKFHEERQMAWDqREVELERQLDIFDHQQNEILSAAQKFEDSTGSMPDPSLPLPN 1445
Cdd:pfam15921 369 SqesgNLDDQLQKLLADLHKREKELSLEKEQNKRLWD-RDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1446 QLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELrlrlpatadreklIAELERKElepks 1525
Cdd:pfam15921 448 RQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDL-------------TASLQEKE----- 509
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1526 hHTMKIAHQTIANMQARLNHKeevLKKYQHLlekareeqreivkKHEEDlHVLHHKLEQQADNSLNKFRQTAQDLLKQsp 1605
Cdd:pfam15921 510 -RAIEATNAEITKLRSRVDLK---LQELQHL-------------KNEGD-HLRNVQTECEALKLQMAEKDKVIEILRQ-- 569
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1606 apvptnkhfiRLAEMEQTVAEQDDSLSSLLTKLKKVSKDL-EKQKEITELKV-REFENTKLRLQETHASE---------- 1673
Cdd:pfam15921 570 ----------QIENMTQLVGQHGRTAGAMQVEKAQLEKEInDRRLELQEFKIlKDKKDAKIRELEARVSDlelekvklvn 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1674 --------VKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEaNSRAPTTTMRNLVDRLKSQLalkEKQQKALSRALLEL 1745
Cdd:pfam15921 640 agserlraVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKR-NFRNKSEEMETTTNKLKMQL---KSAQSELEQTRNTL 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1746 RSEMTAAAEERIIAVTSQKEANLNvqqvverhtrelKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELqkkqk 1825
Cdd:pfam15921 716 KSMEGSDGHAMKVAMGMQKQITAK------------RGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQEL----- 778
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1826 ayNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSL-IDELQKKVKKLESQLER 1884
Cdd:pfam15921 779 --STVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLqFAECQDIIQRQEQESVR 836
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1750-1951 |
3.57e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.67 E-value: 3.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1750 TAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNK 1829
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1830 ILRE--KDGIDQ-------ENDELRRQIKRLSSglqSKTLIDNKQSLIDELQKKVKKLE---SQLERKVDDVDIKPVKEK 1897
Cdd:COG3883 91 RARAlyRSGGSVsyldvllGSESFSDFLDRLSA---LSKIADADADLLEELKADKAELEakkAELEAKLAELEALKAELE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568967310 1898 SSKEELIRWEEGKkwQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEK 1951
Cdd:COG3883 168 AAKAELEAQQAEQ--EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAA 219
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
957-1266 |
3.90e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 3.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 957 ELANKQYNELTTKYRDILQKdnmLVQRTSNLEHLECENASLKEQMEAISKELEITKEKLHTIEQAWEQEtklgndsnmdK 1036
Cdd:COG1196 221 ELKELEAELLLLKLRELEAE---LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----------Q 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1037 AKKSMTNSDIVSISKKITVLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFTELTKINLDAQKVEQMLRDEL 1116
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1117 ADSVTKAVS-----DADRQRILELEKSEVELKVEVSKL-REISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDE 1190
Cdd:COG1196 368 LEAEAELAEaeeelEELAEELLEALRAAAELAAQLEELeEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568967310 1191 KALIAKLHQHVVSLQISEATALGKLESVTSKLQKMEAYNLRLEQKLDEKEQALyyARLEGRNRAKHLRQTIQSLRR 1266
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE--ADYEGFLEGVKAALLLAGLRG 521
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-422 |
4.04e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 4.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 16 DDLPRQEELadKLLISLSKVEVNELKNEDQENMIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLE 95
Cdd:PTZ00121 1549 DELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 96 NELEMaqqsaggrdtrflRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIID 175
Cdd:PTZ00121 1627 KAEEE-------------KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 176 YQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKiEVQNQEMRKNLEESVQEMEKMTDEYNRMKA 255
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED-KKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 256 LVHQSDAVMDQ-IKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWKLILSSKDDEIIEYQQMlqsLRGKLKNA 334
Cdd:PTZ00121 1773 IRKEKEAVIEEeLDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM---QLEEADAF 1849
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 335 QLDADKSNIMALKQGIQERDSQIKmlTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNfYQQTHYMKIHSKVQILEEKT 414
Cdd:PTZ00121 1850 EKHKFNKNNENGEDGNKEADFNKE--KDLKEDDEEEIEEADEIEKIDKDDIEREIPNNN-MAGKNNDIIDDKLDKDEYIK 1926
|
....*...
gi 568967310 415 KEAERIAE 422
Cdd:PTZ00121 1927 RDAEETRE 1934
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1629-2105 |
4.25e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 4.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1629 DSLSSLLTKLKKVSKDLEKQKEITELKVREFENtKLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEA 1708
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEE-RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1709 NSRAPT-TTMRNLVDRLKSQLALKEKQQKALSRALLELRSEMtAAAEERIIAVTSQKEANLNVQQVVERHTRElksQIED 1787
Cdd:PRK03918 313 EKRLSRlEEEINGIEERIKELEEKEERLEELKKKLKELEKRL-EELEERHELYEEAKAKKEELERLKKRLTGL---TPEK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1788 LNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKIL----------REKDGIDQEN--DELRRQIKRLSSGL 1855
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgRELTEEHRKEllEEYTAELKRIEKEL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1856 qsKTLIDNKQSLIDELQKKVKKLESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEGEAHGLAK 1935
Cdd:PRK03918 469 --KEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1936 QLNTLKELfakaDKEKLTLQKKLKTTGMTVDQVLGVRALESEKELEELKKKNLDLENdiLYMRTQQALPRDSVVEDLHLQ 2015
Cdd:PRK03918 547 ELEKLEEL----KKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEP--FYNEYLELKDAEKELEREEKE 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2016 NKYLQEKLHTLEKKLSK-EKYSQSLTSEIESDDHCQKEQE---LQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLK 2091
Cdd:PRK03918 621 LKKLEEELDKAFEELAEtEKRLEELRKELEELEKKYSEEEyeeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
490
....*....|....
gi 568967310 2092 EMCEFLKKGKLELE 2105
Cdd:PRK03918 701 EELEEREKAKKELE 714
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1578-1850 |
9.19e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 9.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1578 LHHKLEQQADNSLNKFRQTaqdllkQSPAPVPTNKHFIRlAEM--EQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELk 1655
Cdd:COG4913 182 LRRRLGIGSEKALRLLHKT------QSFKPIGDLDDFVR-EYMleEPDTFEAADALVEHFDDLERAHEALEDAREQIEL- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1656 vrefentkLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEANSRAptttmrnLVDRLKSQLALKEKQQ 1735
Cdd:COG4913 254 --------LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRA-------ELARLEAELERLEARL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1736 KALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQI-----------EDLNENLLKLKEALKTSKN 1804
Cdd:COG4913 319 DALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLaalglplpasaEEFAALRAEAAALLEALEE 398
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 568967310 1805 KENSLADDLNELNNELQKKQKAYNKILREKDG-------IDQENDELRRQIKR 1850
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASlerrksnIPARLLALRDALAE 451
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
113-281 |
9.31e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 9.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 113 LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESL----- 187
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELaellr 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 188 -LSRRGEDSDYRSQLSKKN-------YELVQYL-----DEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMK 254
Cdd:COG4942 112 aLYRLGRQPPLALLLSPEDfldavrrLQYLKYLaparrEQAEELRADLAELAALRAELEAERAELEALLAELEEERAALE 191
|
170 180
....*....|....*....|....*..
gi 568967310 255 ALVHQSDAVMDQIKKENEHYRLQVREL 281
Cdd:COG4942 192 ALKAERQKLLARLEKELAELAAELAEL 218
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
113-291 |
9.44e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.52 E-value: 9.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 113 LRDEIRQLEKQLEQKDRELEDMEKELDkekKVNEQLalrnEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESL----- 187
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELE---ELNEEY----NELQAELEALQAEIDKLQAEIAEAEAEIEERREELgerar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 188 -LSRRGEDSDYRSQL--SKKNYELVQYLDEIQTLTEANEKI-------EVQNQEMRKNLEESVQEMEKMTDEYNRMK--- 254
Cdd:COG3883 94 aLYRSGGSVSYLDVLlgSESFSDFLDRLSALSKIADADADLleelkadKAELEAKKAELEAKLAELEALKAELEAAKael 173
|
170 180 190
....*....|....*....|....*....|....*...
gi 568967310 255 -ALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEE 291
Cdd:COG3883 174 eAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1136-1961 |
1.18e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1136 EKSEVELKVEVSKLREISDIAKRQVDFLNSQQQSREKEVESLRTQLLDFQAQSDEKALIAKLHQHVVSL-QISEATALGK 1214
Cdd:PTZ00121 1031 ELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKaEEAKKTETGK 1110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1215 LESVTSKLQKM----EAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRQFSGALPLAQQEKFSKTMIQLQND 1290
Cdd:PTZ00121 1111 AEEARKAEEAKkkaeDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKA 1190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1291 KLKIMQEMKNSQQEHRNMENKTLELELKLKGLEELISTLKDARGAQKvinwhvKIEELRLQELKLNRELVKGKEEIKYLN 1370
Cdd:PTZ00121 1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK------DAEEAKKAEEERNNEEIRKFEEARMAH 1264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1371 niISEYEHTINSLEEEIVQQSKFHEERQMAWDQREVELERQLDifdhqqneilSAAQKFEDStgsmpdpslplpNQLEIA 1450
Cdd:PTZ00121 1265 --FARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD----------EAKKKAEEA------------KKADEA 1320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1451 LRKIKENIQvilKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELEPKSHHTMK 1530
Cdd:PTZ00121 1321 KKKAEEAKK---KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1531 IAHQTIANMQARLNHKEEVLKKYQHLLEKAREEQR--EIVKKHEEdlhvlhhkleqqadnslnkfRQTAQDLLKQSPAPv 1608
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadEAKKKAEE--------------------AKKADEAKKKAEEA- 1456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1609 ptnkhfiRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKV--KAEVEDLRH 1686
Cdd:PTZ00121 1457 -------KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAeeAKKADEAKK 1529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1687 AlAQAHKDSQSLKSELQAQKEANSRAPTTTMRNLVDRLKSQLALKEKQQKALSRAllelrSEMTAAAEERIIAVTSQKEA 1766
Cdd:PTZ00121 1530 A-EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA-----EEAKKAEEARIEEVMKLYEE 1603
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1767 NLNVQQVVERHTRELKSQIEDLNE--------NLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKilREKDGID 1838
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKaeeekkkvEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK--KKAEEAK 1681
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1839 QENDELRRQIKRLSSGLQSKTLIDNKQSLIDELQKK---VKKLESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKwqtK 1915
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaeeLKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK---K 1758
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 568967310 1916 VEGLRnRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKLKTT 1961
Cdd:PTZ00121 1759 IAHLK-KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1344-1883 |
1.19e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1344 KIEELRLQELKLNRELVKGKEEIKYLNNIISEYEHTINSLEEEIVQQSKFHEERqmawdQREVELERQLDIFDHQQNEIL 1423
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA-----EEYIKLSEFYEEYLDELREIE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1424 SAAQKFEDstgsmpdpslpLPNQLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQnILSRDKVINELRLRL 1503
Cdd:PRK03918 314 KRLSRLEE-----------EINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE-AKAKKEELERLKKRL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1504 pATADREKLIAELERKElepKSHHTMKIAHQTIANMQARLNHKEEVLKKYQHLLEKAREE----QREIVKKHEEDLhvlh 1579
Cdd:PRK03918 382 -TGLTPEKLEKELEELE---KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcGRELTEEHRKEL---- 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1580 hkleqqadnslnkfrqtaqdllkqspapvpTNKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELK--VR 1657
Cdd:PRK03918 454 ------------------------------LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKelAE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1658 EFENTKLRLQETHASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEANSRAPTttmrnlvdrLKSQLALKEKQQKA 1737
Cdd:PRK03918 504 QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE---------LEKKLDELEEELAE 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1738 LSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQVverhtrelKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELN 1817
Cdd:PRK03918 575 LLKELEELGFESVEELEERLKELEPFYNEYLELKDA--------EKELEREEKELKKLEEELDKAFEELAETEKRLEELR 646
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568967310 1818 NELQKKQKAYNKilREKDGIDQENDELRRQIKRLSSGLQSktlidnKQSLIDELQKKVKKLESQLE 1883
Cdd:PRK03918 647 KELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEE------LEKRREEIKKTLEKLKEELE 704
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1446-1956 |
1.23e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1446 QLEIALRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELE--- 1522
Cdd:PRK03918 218 ELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyik 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1523 -PKSHHTMKIAHQTIANMQARLNHKEEVLKKYQHLLEKAREEQREIVKKHEEDLHVL-----HHKLEQQADNSLNKFRQT 1596
Cdd:PRK03918 298 lSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLeeleeRHELYEEAKAKKEELERL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1597 AQDLLKQSPAPVPTNKHFIRLAEME-----QTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREF-ENTKLRLQETH 1670
Cdd:PRK03918 378 KKRLTGLTPEKLEKELEELEKAKEEieeeiSKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELtEEHRKELLEEY 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1671 ASEVKKVKAEVEDLRHALAQAHKDSQSLKSELQAQKEansrapTTTMRNLVDRLKSQlalkEKQQKALSRALLELRSEMT 1750
Cdd:PRK03918 458 TAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE------LIKLKELAEQLKEL----EEKLKKYNLEELEKKAEEY 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1751 AAAEERIIAVTSQKEanlNVQQVVERhTRELKSQIEDLNENLLKLKEALKTSKNKENSLA-DDLNELNNELQKKQKAYNK 1829
Cdd:PRK03918 528 EKLKEKLIKLKGEIK---SLKKELEK-LEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNE 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1830 ILREKDGidqeNDELRRQIKRLSSglqSKTLIDNKQSLIDELQKKVKKLESQLERKVDDVDIKPVKEKSSKEELIRWEeg 1909
Cdd:PRK03918 604 YLELKDA----EKELEREEKELKK---LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRE-- 674
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 568967310 1910 kkwqtkVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQK 1956
Cdd:PRK03918 675 ------LAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
79-642 |
2.06e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 79 EQAKFENQLKTKVMKLENELEMAQQSAGGrdtrfLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENE 158
Cdd:PTZ00121 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADA-----AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 159 NSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEvqnqEMRKNLEE 238
Cdd:PTZ00121 1380 ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAD----EAKKKAEE 1455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 239 S--VQEMEKMTDEYNRMKALVHQSDAV--MDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWKLILSSKD 314
Cdd:PTZ00121 1456 AkkAEEAKKKAEEAKKADEAKKKAEEAkkADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 315 DEiieyqqmlqslrgKLKNAQldaDKSNIMALKQGIQERDSQIKmltEQVEQYTKEMEKNTFIIEdlKNELQKDKGTSNF 394
Cdd:PTZ00121 1536 AD-------------EAKKAE---EKKKADELKKAEELKKAEEK---KKAEEAKKAEEDKNMALR--KAEEAKKAEEARI 1594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 395 YQQTHYMKIHSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEME 474
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 475 VLTKEINKLEmkiNDILDENEALRERAGlEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMA 554
Cdd:PTZ00121 1675 KKAEEAKKAE---EDEKKAAEALKKEAE-EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 555 QERGKRNAASGLTIDDLNLSETFSHENKIEGRKlnfmslnnmnETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKEL 634
Cdd:PTZ00121 1751 KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE----------ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLV 1820
|
....*...
gi 568967310 635 VEENKQLE 642
Cdd:PTZ00121 1821 INDSKEME 1828
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-376 |
2.18e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 149 ALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQ 228
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 229 NQEMRKNLEESVQEMEKMtDEYNRMKALVHQSD------------AVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVM 296
Cdd:COG4942 99 LEAQKEELAELLRALYRL-GRQPPLALLLSPEDfldavrrlqylkYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 297 MAVNAKVEEWKLILSSKDdeiiEYQQMLQSLrgklkNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTF 376
Cdd:COG4942 178 ALLAELEEERAALEALKA----ERQKLLARL-----EKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2028-2450 |
2.19e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2028 KKLSKEKYSQSLTSEIESDDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKlELERK 2107
Cdd:PTZ00121 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD-EAKKK 1426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2108 LGQVRGAGRSGKTIPELEKTIGLMKKVVEKVQRENEQlKKASGILTSEKMATIEEENRNL-----KAELEKLKAHFGRQL 2182
Cdd:PTZ00121 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAK-KKAEEAKKADEAKKKAEEAKKAdeakkKAEEAKKKADEAKKA 1505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2183 S---------MQFESKNKGTEKIVAENERLRKELKK--EIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQ 2251
Cdd:PTZ00121 1506 AeakkkadeaKKAEEAKKADEAKKAEEAKKADEAKKaeEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2252 LEGADSKSWKSIVVSRVYETKMK-------ELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILK-NVPE 2323
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKaeeakkaEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKiKAAE 1665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2324 GAETEQELIRELQLLRLANNQMDKERAELIHQIEINKD----QTRADSSIPDSDQLK--EKINDLETQLRKLELEKQHSK 2397
Cdd:PTZ00121 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaeelKKKEAEEKKKAEELKkaEEENKIKAEEAKKEAEEDKKK 1745
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 568967310 2398 EEVKKLKKELENFDPSFFEEIEDLKYNYKEEvkKNILLEEKLKKLSEQFGFEL 2450
Cdd:PTZ00121 1746 AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE--KEAVIEEELDEEDEKRRMEV 1796
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
30-493 |
2.77e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 30 ISLSKVEVNELKNEDQENMIHLFRITQSLMKMKAQEVELALEEvekagEEQAKFENQLKTKVMKLENELEMAQQSAGGRD 109
Cdd:TIGR04523 234 IEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL-----EQNNKKIKELEKQLNQLKSEISDLNNQKEQDW 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 110 TRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLS 189
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKN 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 190 RRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKK 269
Cdd:TIGR04523 389 LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLET 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 270 ENEHYRLQVRELTDLLKAKDEEDdpvmmavnakveewklilsskddeiieyqqmlqslrgKLKNAQLDADKSNIMALKQG 349
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKEL-------------------------------------KSKEKELKKLNEEKKELEEK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 350 IQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQ-QTHYMKIHSKVQILEEKTKEAERIAELAEADA 428
Cdd:TIGR04523 512 VKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENlEKEIDEKNKEIEELKQTQKSLKKKQEEKQELI 591
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568967310 429 REKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDE 493
Cdd:TIGR04523 592 DQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
116-657 |
3.70e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 3.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 116 EIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLalrnEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESL--LSRRGE 193
Cdd:PRK03918 208 EINEISSELPELREELEKLEKEVKELEELKEEI----EELEKELESLEGSKRKLEEKIRELEERIEELKKEIeeLEEKVK 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 194 DSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEH 273
Cdd:PRK03918 284 ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 274 YRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAqldadKSNIMALKQGI--- 350
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL-----KKAIEELKKAKgkc 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 351 ---------QERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQK-DKGTSNFYQQTHYMKIHSKVQILEEKTKeaeri 420
Cdd:PRK03918 439 pvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRElEKVLKKESELIKLKELAEQLKELEEKLK----- 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 421 aELAEADAREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKaqikirdGEMEVLTKEINKLEMKINDILDENEALRER 500
Cdd:PRK03918 514 -KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELK-------KKLAELEKKLDELEEELAELLKELEELGFE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 501 AGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEErldlKRKIRQMAQERGKRNAASGLTIDDLNLSETFSHE 580
Cdd:PRK03918 586 SVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEE----LDKAFEELAETEKRLEELRKELEELEKKYSEEEY 661
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568967310 581 NKIEGRKLNfmslnnmnetqsknefLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPK 657
Cdd:PRK03918 662 EELREEYLE----------------LSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1815-2403 |
3.88e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 3.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1815 ELNNELQKKQKAYnkILREKDGIDQENDELRRQIKRLssglqsKTLIDNKQSLIDELQKKVKKLESQLERKVDDVDIKPV 1894
Cdd:COG1196 217 ELKEELKELEAEL--LLLKLRELEAELEELEAELEEL------EAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1895 KEKSSKEELIRWEEGKK-WQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKLKTTGMTVDQVLGVRA 1973
Cdd:COG1196 289 EEYELLAELARLEQDIArLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1974 LESEKELEELKKKNLDLENDILYMRTQQALpRDSVVEDLHLQNKYLQEKLHTLEKKLSKEKysQSLTSEIESDDHCQKEQ 2053
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAEL-AAQLEELEEAEEALLERLERLEEELEELEE--ALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2054 ELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQVRGAGRSGKTIPELEKTIGLMKK 2133
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2134 VVEKVQRENEQLKKASGILTSEKMATIEEENRNLKAELEKLKAhfgrqlsmqfesKNKGTEKIVAENERLRKELKKEIEA 2213
Cdd:COG1196 526 VAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA------------AKAGRATFLPLDKIRARAALAAALA 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2214 SEKLRIAKNNLELvndkmAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYETKMKELESDIAKKNQSITDLKQL 2293
Cdd:COG1196 594 RGAIGAAVDLVAS-----DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2294 VREATEREQKAKKytEDLEQQIEilknvpEGAETEQELIRELQLLRLANNQMDKERAELIHQIEINKDQTRADSSIPDSD 2373
Cdd:COG1196 669 ELLAALLEAEAEL--EELAERLA------EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
570 580 590
....*....|....*....|....*....|
gi 568967310 2374 QLKEKINDLETQLRKLELEKqhSKEEVKKL 2403
Cdd:COG1196 741 LLEEEELLEEEALEELPEPP--DLEELERE 768
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1464-2277 |
4.54e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 4.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1464 TQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELEPkSHHTMKIAHQTIANMQARL 1543
Cdd:TIGR00606 236 SREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKV-FQGTDEQLNDLYHNHQRTV 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1544 NHKEEVLKKYQHLLEKAREEQREIVKKHEEdLHVLHHKLEQQADNSLNKFRqtAQDLLKQSPAPVP-------------- 1609
Cdd:TIGR00606 315 REKERELVDCQRELEKLNKERRLLNQEKTE-LLVEQGRLQLQADRHQEHIR--ARDSLIQSLATRLeldgfergpfserq 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1610 -TNKHFIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLqETHASEVKKVKAEVEDLRHAL 1688
Cdd:TIGR00606 392 iKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEIL-EKKQEELKFVIKELQQLEGSS 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1689 AQAHKDSQSLKSELQAQKEANSRAPTTTMRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAvTSQKEANL 1768
Cdd:TIGR00606 471 DRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT-KDKMDKDE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1769 NVQQVVERHTRELKSQIEDLnENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKD------------- 1835
Cdd:TIGR00606 550 QIRKIKSRHSDELTSLLGYF-PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELEskeeqlssyedkl 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1836 ----GIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDE--------------LQKKVKKLESQLERKVDDVDIK----P 1893
Cdd:TIGR00606 629 fdvcGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQfitqltdenqsccpVCQRVFQTEAELQEFISDLQSKlrlaP 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1894 VKEKSSKEELIRWE-EGKKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELFAKaDKEKLTLQKKLKTTGMTVDQVLGVr 1972
Cdd:TIGR00606 709 DKLKSTESELKKKEkRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR-LKNDIEEQETLLGTIMPEEESAKV- 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1973 ALESEKELEELKKKNLDLENDIlymrTQQALPRDSVVEDLHLQ--NKYLQEKLHTLEKKLSKEKYSQSLtseieSDDHCQ 2050
Cdd:TIGR00606 787 CLTDVTIMERFQMELKDVERKI----AQQAAKLQGSDLDRTVQqvNQEKQEKQHELDTVVSKIELNRKL-----IQDQQE 857
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2051 KEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLE-----------LERKLGQVRGAGRSGK 2119
Cdd:TIGR00606 858 QIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQdspletflekdQQEKEELISSKETSNK 937
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2120 TI--------PELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMATIEEE-------NRNLKAELEKLKAHFGRQLSM 2184
Cdd:TIGR00606 938 KAqdkvndikEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECekhqekiNEDMRLMRQDIDTQKIQERWL 1017
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2185 QFESKNKGTEKIVAENERLRKELKKEI-------------EASEKLRIAKNNLELVNDKMAAQLEEtgKRLQFAESRAPQ 2251
Cdd:TIGR00606 1018 QDNLTLRKRENELKEVEEELKQHLKEMgqmqvlqmkqehqKLEENIDLIKRNHVLALGRQKGYEKE--IKHFKKELREPQ 1095
|
890 900
....*....|....*....|....*.
gi 568967310 2252 LEGADSKSWKSIVVSRVYETKMKELE 2277
Cdd:TIGR00606 1096 FRDAEEKYREMMIVMRTTELVNKDLD 1121
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2202-2447 |
5.89e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 5.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2202 RLRKELKKEIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEGADSKSWKSIVVSRVYETKMKELESDIA 2281
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2282 KKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILKNVPEGAETEQELIRELQLLRLANNQMDKERAELIHQI----- 2356
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIngiee 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2357 ---EINKDQTRADSSIPDSDQLKEKINDLETQLRKLELEKQHSKEEVKKLKKELEnfdpsffEEIEDLKYNYKEEVKKNI 2433
Cdd:PRK03918 329 rikELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG-------LTPEKLEKELEELEKAKE 401
|
250
....*....|....
gi 568967310 2434 LLEEKLKKLSEQFG 2447
Cdd:PRK03918 402 EIEEEISKITARIG 415
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1820-2391 |
7.59e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 7.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1820 LQKKQKAYNKILREKDGIDQENDELRRQIKRLSsglQSKTLIDNKQSLIDELQKKVKKLESQLERKVDDVD--------- 1890
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTE---NIEELIKEKEKELEEVLREINEISSELPELREELEklekevkel 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1891 --IKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEGEAHGLAKQLNTLKELfaKADKEKLTLQKKLKTTGMTVDQV 1968
Cdd:PRK03918 234 eeLKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL--KEKAEEYIKLSEFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1969 LGVRALESEKELEELKKKNLDLENDilymrtqqalprDSVVEDLHLQNKYLQEKLHTLEKKLSKEKYSQSLTSEIE---S 2045
Cdd:PRK03918 312 IEKRLSRLEEEINGIEERIKELEEK------------EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELErlkK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2046 DDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELE---RKLGQVRGAGRSGKTIP 2122
Cdd:PRK03918 380 RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgRELTEEHRKELLEEYTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2123 ELEKTIGLMKKVVEKVQRENEQLKKASGILTSE----KMATIEEENRNLKAELEKLKAHFGRQLSMQFESKNKGTEKIVA 2198
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKEseliKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2199 ENERLRKELKKEIEASEKLRIAKNNLELVNDKMAA---QLEETG-KRLQFAESRAPQLEGADSKSwksivvsrvyeTKMK 2274
Cdd:PRK03918 540 EIKSLKKELEKLEELKKKLAELEKKLDELEEELAEllkELEELGfESVEELEERLKELEPFYNEY-----------LELK 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2275 ELESDIAKKNQSITDLKQLVREATEREQKAKKYTEDLEQQIEILKNvpEGAETEQELIRELQLlrlannQMDKERAELIH 2354
Cdd:PRK03918 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK--KYSEEEYEELREEYL------ELSRELAGLRA 680
|
570 580 590
....*....|....*....|....*....|....*..
gi 568967310 2355 QIEINKDqtRADSSIPDSDQLKEKINDLETQLRKLEL 2391
Cdd:PRK03918 681 ELEELEK--RREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
223-500 |
8.52e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 8.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 223 EKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDdpvMMAVNAK 302
Cdd:TIGR02169 219 EKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE---QLRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 303 VEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDADKSnimalkqgiqerDSQIKMLTEQVEQYTKEMEKNTFIIEDLK 382
Cdd:TIGR02169 296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL------------LAEIEELEREIEEERKRRDKLTEEYAELK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 383 NElqkdkgtsnfyqqthYMKIHSKVQILEEKTKEA-ERIAELAEA--DAREKDKELVEALKRLKDYESGVYG-LEDAVIE 458
Cdd:TIGR02169 364 EE---------------LEDLRAELEEVDKEFAETrDELKDYREKleKLKREINELKRELDRLQEELQRLSEeLADLNAA 428
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568967310 459 IKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRER 500
Cdd:TIGR02169 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1717-2381 |
1.38e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1717 MRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEEriIAVTSQKEANLNVQQVVErhtrelKSQIEDLNENLLKLK 1796
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNK--IKILEQQIKDLNDKLKKN------KDKINKLNSDLSKIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1797 EALKTSKNKENSLADDLNELNNELQKKQKAYNKIL----REKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDELQ 1872
Cdd:TIGR04523 110 SEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLteikKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1873 KKVKKLESQLERKVDDVDIKPVKEKSSKEELIRWEEGKKWQTK-VEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEK 1951
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDnIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1952 LTLQKKLKTTGMTVDQvlgvralesekeleeLKKKNLDLENDILYMRTQQAlprDSVVEDLHLQNKYLQEKLHTLEKKLS 2031
Cdd:TIGR04523 270 SEKQKELEQNNKKIKE---------------LEKQLNQLKSEISDLNNQKE---QDWNKELKSELKNQEKKLEEIQNQIS 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2032 K-EKYSQSLTSEIESddhcqkeqeLQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDLKEMCEFLKKGKLELERKLGQ 2110
Cdd:TIGR04523 332 QnNKIISQLNEQISQ---------LKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQN 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2111 VRgagrsgKTIPELEKTIGLMKKVVEKVQRENEQLkKASGILTSEKMATIEEENRNLKAELEKLKAhFGRQLSMQFESKN 2190
Cdd:TIGR04523 403 QE------KLNQQKDEQIKKLQQEKELLEKEIERL-KETIIKNNSEIKDLTNQDSVKELIIKNLDN-TRESLETQLKVLS 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2191 KGTEKIVAENERLRKELKKEIEASEKLRIAKNNLELVNDKMAAQLEETGKRLQFAESRAPQLEgADSKSWKSIVVSRVYE 2270
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKE-SKISDLEDELNKDDFE 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2271 TKMKELESDIAKKNQSITDLKQ----LVREATEREQKAKKYTED-------LEQQIEILKNVPEGAETEQELIRELQLLR 2339
Cdd:TIGR04523 554 LKKENLEKEIDEKNKEIEELKQtqksLKKKQEEKQELIDQKEKEkkdlikeIEEKEKKISSLEKELEKAKKENEKLSSII 633
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 568967310 2340 LANNQMDKERAELIHQIEINKDQTRADSSIPDSD--QLKEKIND 2381
Cdd:TIGR04523 634 KNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKikESKTKIDD 677
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
783-1367 |
1.51e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 783 QELDNKEKKLKHLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKDIWKTDSEMIREEKRKLED--QAEQDAVKVKEYNNLLS 860
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEakKKAEEAKKADEAKKKAE 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 861 ALQMDSNEMKKMLSENSRKITVLQVNEKSLIRQYTTLVEMER--HLRKENGKHRNDVIAMEAEVTEKLGSLQRFKEMAIF 938
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 939 KIAALQKVidnsvslselELANKQYNELTTKYRDILQKDnmlvqrtsnlehlecenaSLKEQMEAISKELEItKEKLHTI 1018
Cdd:PTZ00121 1406 KADELKKA----------AAAKKKADEAKKKAEEKKKAD------------------EAKKKAEEAKKADEA-KKKAEEA 1456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1019 EQAWEQETKLGNDSNMDKAKKSMTNSDIVSISKKITVLEMKELNERQRAEHCQKMYEHLRTSlkqmEERNFELETKFTEL 1098
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA----EEAKKADEAKKAEE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1099 TKINLDAQKVEQMLRdelADSVTKAVsdadrqrilELEKSEVELKVE-VSKLREISDIAKRQVDFLNSQQQSREKEVESL 1177
Cdd:PTZ00121 1533 AKKADEAKKAEEKKK---ADELKKAE---------ELKKAEEKKKAEeAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL 1600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1178 RTQLLDFQAQSDEKALIAKLHQHVVSLQISEATALGKLESVTSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHL 1257
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1258 RQTIQSLRRQFSGALPLAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRnmeNKTLELELKLKGLEELISTLKDARGAQK 1337
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK---IKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
|
570 580 590
....*....|....*....|....*....|
gi 568967310 1338 VINWHVKIEELRLQELKLNRELVKgKEEIK 1367
Cdd:PTZ00121 1758 KIAHLKKEEEKKAEEIRKEKEAVI-EEELD 1786
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
130-173 |
1.54e-03 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 43.28 E-value: 1.54e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 568967310 130 ELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDI 173
Cdd:PRK03992 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSEL 45
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1451-2217 |
1.63e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1451 LRKIKENIQVILKTQATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATADREKLIAELERKELEPKSHHTMK 1530
Cdd:pfam02463 271 LKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1531 IAHQTIANMQARLNHKEEVLKKYQHLLEKAREEQREIVKKHEEDLHVLHHKLEQQADNSLNKFRQTAQDLLKqspapvpt 1610
Cdd:pfam02463 351 REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLK-------- 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1611 nkhfIRLAEMEQTVAEQDDSLSSLLTKLKKVSKDLEKQKEITELKVREFENTKLRLQETHASEVKKVKAEvEDLRHALAQ 1690
Cdd:pfam02463 423 ----EEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLEL-LLSRQKLEE 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1691 AHKDSQSLKSELQAQKEANSRAPTTTMRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNV 1770
Cdd:pfam02463 498 RSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1771 QQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKR 1850
Cdd:pfam02463 578 RKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1851 LSSGLQSKTLIDNKQSLIDELQKKVKKLESQLERKVddvdIKPVKEKSSKEELIRWEEGKKWQTKVEGLRNRLKEKEGEA 1930
Cdd:pfam02463 658 LAEKSEVKASLSELTKELLEIQELQEKAESELAKEE----ILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDK 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1931 HGLAKQLNTLKELFAKADKEKLTLQKKLKttgmtvdqvlgvRALESEKELEELKKKNLDLENDILYMRTQQALPRDSVVE 2010
Cdd:pfam02463 734 INEELKLLKQKIDEEEEEEEKSRLKKEEK------------EEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE 801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2011 DLHLQNKYLQEKLHTLEKKLSKEKYSQSLTSEIESDDHCQKEQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVKDL 2090
Cdd:pfam02463 802 ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEE 881
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 2091 KEMCEFLKKGKLELERKLGQVRGAGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKAS---GILTSEKMATIEEENRNL 2167
Cdd:pfam02463 882 QKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELlleEADEKEKEENNKEEEEER 961
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 568967310 2168 KAELEKLKAHFGRQLSM---QFESKNKGTEKIVAENERLRKELKKEIEASEKL 2217
Cdd:pfam02463 962 NKRLLLAKEELGKVNLMaieEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
52-252 |
1.73e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 43.48 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 52 FRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQ-----LKTKVMKLENELEMAQQsaggrDTRFLRDEIRQLEKQLEQ 126
Cdd:pfam05667 300 FTHTEKLQFTNEAPAATSSPPTKVETEEELQQQREeeleeLQEQLEDLESSIQELEK-----EIKKLESSIKQVEEELEE 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 127 KDRELEDMEKELDKEKKVNEQLalrnEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSrrgEDSDYRSQLSKKNY 206
Cdd:pfam05667 375 LKEQNEELEKQYKVKKKTLDLL----PDAEENIAKLQALVDASAQRLVELAGQWEKHRVPLIE---EYRALKEAKSNKED 447
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568967310 207 ELVQYLDEIQTLteaNEKIEVQNQEMRKNLEESVQ---EMEKMTDEYNR 252
Cdd:pfam05667 448 ESQRKLEEIKEL---REKIKEVAEEAKQKEELYKQlvaEYERLPKDVSR 493
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1725-1888 |
1.73e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1725 KSQLALKEKQQKALSRALLELRSEMTAAAEERIiAVTSQKEANLNVQQV---------VERHTRELKSQIEDLNENLLKL 1795
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD-ALQERREALQRLAEYswdeidvasAEREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1796 KEalktsknkensLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQS------------------ 1857
Cdd:COG4913 688 AA-----------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaedlarlelralleerfa 756
|
170 180 190
....*....|....*....|....*....|....*....
gi 568967310 1858 --------KTLIDNKQSLIDELQKKVKKLESQLERKVDD 1888
Cdd:COG4913 757 aalgdaveRELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1733-1962 |
1.96e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1733 KQQKALSRALLELRSEMtaAAEERIIAVTSQKEANLNVQqvverhTRELKSQIEDLNENLLKLKEALKTSKNKENSLADD 1812
Cdd:COG4942 20 DAAAEAEAELEQLQQEI--AELEKELAALKKEEKALLKQ------LAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1813 LNELNNELQKKQKAYNKILREKDGIDQEN--------DELRRQIKRLSSglqSKTLIDNKQSLIDELQKKVKKLESQLER 1884
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPplalllspEDFLDAVRRLQY---LKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568967310 1885 KVDDVDIKPVKEKSSKEELIRWEEGKKWQTK-VEGLRNRLKEKEGEAHGLAKQLNTLKELFAKADKEKLTLQKKLKTTG 1962
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKlLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
113-934 |
2.55e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 113 LRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESLLSRRG 192
Cdd:pfam02463 192 LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 193 EDSDYRSQLSK-KNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKEN 271
Cdd:pfam02463 272 KENKEEEKEKKlQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKR 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 272 EHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEwklilSSKDDEIIEYQQMLQSLRGKLKNAQLDADKSNIMALKQGIQ 351
Cdd:pfam02463 352 EAEEEEEEELEKLQEKLEQLEEELLAKKKLESER-----LSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 352 ERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSnfyqqthymkihSKVQILEEKTKEAERIAELAEADAREK 431
Cdd:pfam02463 427 EELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELEL------------KKSEDLLKETQLVKLQEQLELLLSRQK 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 432 DKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMIDL 511
Cdd:pfam02463 495 LEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELP 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 512 TEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIrqMAQERGKRNAASGLTIDDLNLSETFSHENKIEGRKLNFM 591
Cdd:pfam02463 575 LGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATL--EADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGV 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 592 SLNnmnetQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKDSDVKGGETSLIIP 671
Cdd:pfam02463 653 SLE-----EGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 672 SLERLVNAMESKNAEGIFDA--SLHLKAQVDQLTGRNEELRQELRQSRKEAVNYSQQLVKANLKIDHLEKETDLLRQSAG 749
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEeeEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALE 807
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 750 SNVVYKGI--DLPDGIAPSSAYIINSQNEYLIHLLQELDNKEKKLKHLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKDIW 827
Cdd:pfam02463 808 EELKEEAEllEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDE 887
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 828 K--------TDSEMIREEKRKLEDQAEQDAVKVKEYNNLLSALQMDSNEMKKMLSENSRKITVLQVNEKSLIRQYTTLVE 899
Cdd:pfam02463 888 LeskeekekEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLL 967
|
810 820 830
....*....|....*....|....*....|....*
gi 568967310 900 MERHLRKENGKHRNDVIAMEAEVTEKLGSLQRFKE 934
Cdd:pfam02463 968 AKEELGKVNLMAIEEFEEKEERYNKDELEKERLEE 1002
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
120-491 |
2.62e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 120 LEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQ---IDSQKESLLSRRGEDSD 196
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEkelLEKEIERLKETIIKNNS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 197 YRSQLSKKNYELVQYLDEIQTLTEANEK----IEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENE 272
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKNLDNTRESLETqlkvLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 273 HYRLQVRELTDL-----LKAKDEEDDPVMMAVNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDADK--SNIMA 345
Cdd:TIGR04523 521 SLKEKIEKLESEkkekeSKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQkeKEKKD 600
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 346 LKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQTHYMKIHSKVQILEEKTKEAERIAELAE 425
Cdd:TIGR04523 601 LIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIE 680
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568967310 426 ADAREKDKELVEALKRLKDyESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDIL 491
Cdd:TIGR04523 681 LMKDWLKELSLHYKKYITR-MIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKFDDAF 745
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
82-191 |
2.88e-03 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 42.02 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 82 KFENQLKTKV-----MKL--------------ENELEMAQQSAGGRDTRFLRdEIRQLEKQLEQKDRELEDMEKELDKEK 142
Cdd:COG4026 77 KFFEELKGMVghverMKLplghdveyvdvelvRKEIKNAIIRAGLKSLQNIP-EYNELREELLELKEKIDEIAKEKEKLT 155
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568967310 143 KVNEQLALRNEEAENENSKLRRENEQLRQD---IIDYQKQIDSQKESLLSRR 191
Cdd:COG4026 156 KENEELESELEELREEYKKLREENSILEEEfdnIKSEYSDLKSRFEELLKKR 207
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
94-284 |
3.13e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 94 LENELEMAQQSAGGRdTRFLRDEIRQLEKQLEQKDRELEDMEKE-----LDKEKKVNEQlalRNEEAENENSKLRRENEQ 168
Cdd:COG3206 162 LEQNLELRREEARKA-LEFLEEQLPELRKELEEAEAALEEFRQKnglvdLSEEAKLLLQ---QLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 169 LRQDIIDYQKQIDSQKESL--LSRRGEDSDYRSQLSKKNYELVQ----YLDEIQTLTEANEKIEVQNQEMRKNLEESVQE 242
Cdd:COG3206 238 AEARLAALRAQLGSGPDALpeLLQSPVIQQLRAQLAELEAELAElsarYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568967310 243 MEKmtdEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDL 284
Cdd:COG3206 318 LEA---ELEALQAREASLQAQLAQLEARLAELPELEAELRRL 356
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
108-648 |
3.21e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 3.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 108 RDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKESL 187
Cdd:TIGR04523 103 SDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 188 LSRRGEDSDYRSQLSKKNYEL---VQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVM 264
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQ 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 265 DQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAV----NAKVEEW----KLILSSKDDEIIEYQ-------QMLQSLRG 329
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEIsdlnNQKEQDWnkelKSELKNQEKKLEEIQnqisqnnKIISQLNE 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 330 KLKN--AQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQthymKIHSKV 407
Cdd:TIGR04523 343 QISQlkKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE----QIKKLQ 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 408 QILEEKTKEAERIAELAE------ADAREKDKELVEALKRLKDYEsgvyglEDAVIEIKNCKAQIKIRDGEMEVLTKEIN 481
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIknnseiKDLTNQDSVKELIIKNLDNTR------ESLETQLKVLSRSINKIKQNLEQKQKELK 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 482 KLEMKINDILDENEALRERaglepktMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDL-----KRKIRQMAQE 556
Cdd:TIGR04523 493 SKEKELKKLNEEKKELEEK-------VKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDdfelkKENLEKEIDE 565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 557 RGKRNAASGLTIDDLNLSETFSHENKIEGRKLNFMSLNNMNETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVE 636
Cdd:TIGR04523 566 KNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
570
....*....|..
gi 568967310 637 ENKQLEEGMKEI 648
Cdd:TIGR04523 646 EVKQIKETIKEI 657
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
85-658 |
3.48e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 85 NQLKTKVMKLENELEMAQqsaggRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRR 164
Cdd:TIGR02169 290 LRVKEKIGELEAEIASLE-----RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 165 ENEQLRQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEME 244
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 245 KMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWK------LILSSKDDEII 318
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRggraveEVLKASIQGVH 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 319 -----------EYQQMLQSLRG-KLKNAQLDAD---KSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKN 383
Cdd:TIGR02169 525 gtvaqlgsvgeRYATAIEVAAGnRLNNVVVEDDavaKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVD 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 384 ELQKDKG--------------TSNFYQQTHYMKIHSKVQI---LEEKT------KEAERIAELAEADAREKDKELVEALK 440
Cdd:TIGR02169 605 LVEFDPKyepafkyvfgdtlvVEDIEAARRLMGKYRMVTLegeLFEKSgamtggSRAPRGGILFSRSEPAELQRLRERLE 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 441 RLKDYESGvygLEDAVIEIKNCKAQIKIrdgEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMIDLTEFRNSKRL 520
Cdd:TIGR02169 685 GLKRELSS---LQSELRRIENRLDELSQ---ELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 521 KQQQYRAENQVLLKEIESLEEERLDLKRKIRqMAQERGKRNAASGLTIDDLNLSETFSHENKIEGRKLNFMSL--NNMNE 598
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLS-HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYleKEIQE 837
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 599 TQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKD 658
Cdd:TIGR02169 838 LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1646-1829 |
3.57e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 3.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1646 EKQKEITELKvrefenTKLRLQETHASEVKKVKAEVEDLRHAL-------------AQAHKDSQSLKSELQAQKEANSRa 1712
Cdd:COG4913 614 ALEAELAELE------EELAEAEERLEALEAELDALQERREALqrlaeyswdeidvASAEREIAELEAELERLDASSDD- 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1713 ptttmrnlVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVQQVVERHTRELKSQIEDLNENL 1792
Cdd:COG4913 687 --------LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568967310 1793 LKLKEALKTSKNKENSLAD---DLNELNNELQKKQKAYNK 1829
Cdd:COG4913 759 LGDAVERELRENLEERIDAlraRLNRAEEELERAMRAFNR 798
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1617-1866 |
3.73e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1617 LAEMEQTVAEQDDSLSSLLTKLKKVSKDLEK-QKEITELkvrefentklrlqethASEVKKVKAEVEDLRHALAQAHKDS 1695
Cdd:COG3883 4 LALAAPTPAFADPQIQAKQKELSELQAELEAaQAELDAL----------------QAELEELNEEYNELQAELEALQAEI 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1696 QSLKSELQAQKEAnsraptttMRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEANLNVqqvve 1775
Cdd:COG3883 68 DKLQAEIAEAEAE--------IEERREELGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADL----- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1776 rhTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGL 1855
Cdd:COG3883 135 --LEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAA 212
|
250
....*....|.
gi 568967310 1856 QSKTLIDNKQS 1866
Cdd:COG3883 213 AAAAAAAAAAA 223
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
116-653 |
4.00e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 116 EIRQLEKQLEQKDRELEDMEKEL-----------DKEKKVNEQLALRNEEAENENSKLRRENEQLRQ---DIIDYQKQID 181
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELknldknlnkdeEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKlnsDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 182 SQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKalvhqsd 261
Cdd:TIGR04523 114 NDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQ------- 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 262 AVMDQIKKEnehyRLQVRELTDLLKAKDEEDDpvmmAVNAKVEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQldadks 341
Cdd:TIGR04523 187 KNIDKIKNK----LLKLELLLSNLKKKIQKNK----SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ------ 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 342 nimalKQGIQERDSQIKMLTeQVEQYTKEMEKNTFIIEDLKNELQKdkgtsnfyqqthymkihSKVQILEEKTKEAERIA 421
Cdd:TIGR04523 253 -----TQLNQLKDEQNKIKK-QLSEKQKELEQNNKKIKELEKQLNQ-----------------LKSEISDLNNQKEQDWN 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 422 ELAEADAREKDKELVEALKRLKDYESGVYGLEDaviEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALREra 501
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNNKIISQLNE---QISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ-- 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 502 glepkTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAasglTIDDLnlsetfshEN 581
Cdd:TIGR04523 385 -----EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNS----EIKDL--------TN 447
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568967310 582 KIEGRKLNFMSLNNMNETQSKN-EFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAIK 653
Cdd:TIGR04523 448 QDSVKELIIKNLDNTRESLETQlKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS 520
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
78-183 |
4.76e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 42.35 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 78 EEQAKFEnQLKTKVMKLE---NELEMAQQSAGGRD--TRfLRDEIrqLEKQLEQKDRELEDMEKELDKEKKVNEQLALRN 152
Cdd:PRK10929 170 LAQAQLT-ALQAESAALKalvDELELAQLSANNRQelAR-LRSEL--AKKRSQQLDAYLQALRNQLNSQRQREAERALES 245
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 568967310 153 EEAENENS-----------KLRRE-----NEQL-RQDIIDY-QKQIDSQ 183
Cdd:PRK10929 246 TELLAEQSgdlpksivaqfKINRElsqalNQQAqRMDLIASqQRQAASQ 294
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1755-1966 |
4.79e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 4.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1755 ERIIAVTSQKEANLNVQqvvERHTRELKSQIEDLNENLLKLKEALKtsknkensladdlNELNNELQKKQKAYNKILRE- 1833
Cdd:PRK00409 519 NELIASLEELERELEQK---AEEAEALLKEAEKLKEELEEKKEKLQ-------------EEEDKLLEEAEKEAQQAIKEa 582
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 1834 KDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDELQKKVKKL----ESQLERKV-DDVDIKPVKEKSskeELIRWEE 1908
Cdd:PRK00409 583 KKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKkkqkEKQEELKVgDEVKYLSLGQKG---EVLSIPD 659
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568967310 1909 GKKWQTKVEGLRNRLKEKEGEAHGLAKqlntlKELFAKADKEKLtlqkKLKTTGMTVD 1966
Cdd:PRK00409 660 DKEAIVQAGIMKMKVPLSDLEKIQKPK-----KKKKKKPKTVKP----KPRTVSLELD 708
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
90-556 |
7.57e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 90 KVMKLENELEMAQQSAggRDTRFLRDEIRQ----LEKQLEQKDRELEDMEKELDKEKKVNEQLALRNEEAENENSKLRRE 165
Cdd:pfam15921 343 KIEELEKQLVLANSEL--TEARTERDQFSQesgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRE 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 166 NEQLRQDIidyqkqidSQKESLLsrrgedsdyRSQLSKKNYELVQYLDEIQTLTEANEKIevqnQEMRKNLEESVQEMEK 245
Cdd:pfam15921 421 LDDRNMEV--------QRLEALL---------KAMKSECQGQMERQMAAIQGKNESLEKV----SSLTAQLESTKEMLRK 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 246 MTDEYNRMKALVHQSDavmdqikkenehyrlqvRELTDlLKAKDEEDDPVMMAVNAKVEEwkliLSSKDDEIIEYQQMLQ 325
Cdd:pfam15921 480 VVEELTAKKMTLESSE-----------------RTVSD-LTASLQEKERAIEATNAEITK----LRSRVDLKLQELQHLK 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 326 SLRGKLKNAQLDADksnimALKQGIQERDSQIKMLTEQVEQYTK---EMEKNTFIIEDLKNELQKDKGTSNFYQQthymk 402
Cdd:pfam15921 538 NEGDHLRNVQTECE-----ALKLQMAEKDKVIEILRQQIENMTQlvgQHGRTAGAMQVEKAQLEKEINDRRLELQ----- 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 403 ihsKVQILEEKTKEAERIAELAEADAREKDKELVEA-LKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEI- 480
Cdd:pfam15921 608 ---EFKILKDKKDAKIRELEARVSDLELEKVKLVNAgSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFr 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 481 ----------NKLEMKINDILDENEALRERA-------GLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEER 543
Cdd:pfam15921 685 nkseemetttNKLKMQLKSAQSELEQTRNTLksmegsdGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEK 764
|
490
....*....|...
gi 568967310 544 LDLKRKIRQMAQE 556
Cdd:pfam15921 765 HFLKEEKNKLSQE 777
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
170-746 |
8.10e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 8.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 170 RQDIIDYQKQIDSQKESLLSRRGEDSDYRSQLSKKNY---ELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKM 246
Cdd:PRK01156 151 RKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYleeKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNA 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 247 TDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDE-----------EDDPVMMAVNAKVEEWKLIlsskdD 315
Cdd:PRK01156 231 MDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYykeleerhmkiINDPVYKNRNYINDYFKYK-----N 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 316 EIIEYQQMLQSLrgklkNAQLDADKSNIMALKQGIQERDSQIKMlteqveqyTKEMEKNTFIIEDLKNELQKDKGTSNFY 395
Cdd:PRK01156 306 DIENKKQILSNI-----DAEINKYHAIIKKLSVLQKDYNDYIKK--------KSRYDDLNNQILELEGYEMDYNSYLKSI 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 396 QQTHyMKIHSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVieiknckaqIKIRDGEMEV 475
Cdd:PRK01156 373 ESLK-KKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRI---------RALRENLDEL 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 476 ltkeinklemkindilDENEALRERAGLEPKTMIDLTEfRNSKRLKqQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQ 555
Cdd:PRK01156 443 ----------------SRNMEMLNGQSVCPVCGTTLGE-EKSNHII-NHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKK 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 556 ERGKRNAAS-GLTIDDLNLSETFSHENKIEGRKLNFMSLNNMNETQSKNEFLSRELAEKEKDLE--------RSRTVIAK 626
Cdd:PRK01156 505 RKEYLESEEiNKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTswlnalavISLIDIET 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 627 FQSKLKELVEENKQLEEGMKEILQAIKDMPKDSDVKGGETSLIIPSLERLVNAMESKNA--EGIFDASLHLK---AQVDQ 701
Cdd:PRK01156 585 NRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKIliEKLRGKIDNYKkqiAEIDS 664
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 568967310 702 LTGRNEELRQELRQSRKEAVNYSQQLVKANLKIDHLEKETDLLRQ 746
Cdd:PRK01156 665 IIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRT 709
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
93-564 |
8.21e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 8.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 93 KLENELEMAQQSAGGRDTRFLrDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLalrnEEAENENSKLRRENEQLRQD 172
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNL-KELKELEEELKEAEEKEEEYAELQEELEELEEEL----EELEAELEELREELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 173 IidyqkqidsQKESLLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEE--------SVQEME 244
Cdd:COG4717 125 L---------QLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEElleqlslaTEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 245 KMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWKLILSSKDDEIIEYQQML 324
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTI 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 325 QSLRGKLknAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKNELQKDKGTSNFYQQTHYMKIH 404
Cdd:COG4717 276 AGVLFLV--LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 405 SKVQILEEKTK----EAERIAELAEADArEKDKELVEALKRLKDYESGVYGLEDAVIEI--KNCKAQIKIRDGEMEVLTK 478
Cdd:COG4717 354 REAEELEEELQleelEQEIAALLAEAGV-EDEEELRAALEQAEEYQELKEELEELEEQLeeLLGELEELLEALDEEELEE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 479 EINKLEMKINDILDENEALRERAGlepktmidltefrnskRLKQQQYRAENQvllKEIESLEEERLDLKRKIRQMAQERG 558
Cdd:COG4717 433 ELEELEEELEELEEELEELREELA----------------ELEAELEQLEED---GELAELLQELEELKAELRELAEEWA 493
|
....*.
gi 568967310 559 KRNAAS 564
Cdd:COG4717 494 ALKLAL 499
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
86-189 |
8.30e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 8.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 86 QLKTKVMKLENELEmaqqsaggRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKekkvneqlalRNEEAENENSKLRRE 165
Cdd:PRK12704 61 EAKEEIHKLRNEFE--------KELRERRNELQKLEKRLLQKEENLDRKLELLEK----------REEELEKKEKELEQK 122
|
90 100
....*....|....*....|....
gi 568967310 166 NEQLRQDIIDYQKQIDSQKESLLS 189
Cdd:PRK12704 123 QQELEKKEEELEELIEEQLQELER 146
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
301-655 |
8.66e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 8.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 301 AKVEEWKLILSSKDDEIIEYQQMLQSLRGKL--KNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFII 378
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKELeeLSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 379 EDLKNELQKDKGTSNfYQQTHYMKIHSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDYESGvygLEDAVIE 458
Cdd:TIGR02168 771 EEAEEELAEAEAEIE-ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR---LEDLEEQ 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 459 IKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAglepktmidltefrnskrlkqQQYRAENQVLLKEIES 538
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL---------------------ALLRSELEELSEELRE 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 539 LEEERLDLKRKIRQMAQERGK-RNAASGLTIDDLNLSETFSHENKIEgrklnfmsLNNMNETQSKNEFLSRELAEKEKDL 617
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQlELRLEGLEVRIDNLQERLSEEYSLT--------LEEAEALENKIEDDEEEARRRLKRL 977
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 568967310 618 ERSR--------TVIAKFQSKLKELVEENKQ---LEEGMKEILQAIKDM 655
Cdd:TIGR02168 978 ENKIkelgpvnlAAIEEYEELKERYDFLTAQkedLTEAKETLEEAIEEI 1026
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
27-652 |
8.66e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 8.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 27 KLLISLSKVEVNELKNEDQENMIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMAQQSAG 106
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 107 GRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQlalrNEEAENENSKLRRENEQLRQDIIDYQKQIDSQKES 186
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREA----EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSS 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 187 LLSRRGEDSDYRSQLSKKNYELVQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQ 266
Cdd:pfam02463 389 AAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 267 ---IKKENEHYRLQVRELTDLLKAKDEEDDPVMMAVNAKVEEWKLIL-----SSKDDEIIEYQQMLQSLRGKLKNAQLDA 338
Cdd:pfam02463 469 kseDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALikdgvGGRIISAHGRLGDLGVAVENYKVAISTA 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 339 DKSNIMALKQGIQERDSQIKMLTEQveqyTKEMEKNTFIIEDLKNELQKDKGTSNFYQQTHYMKIHSKVQILEEKTKEAE 418
Cdd:pfam02463 549 VIVEVSATADEVEERQKLVRALTEL----PLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKV 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 419 RIAELAEAD-AREKDKELVEALKRLKDYESGVYGLEDAVIEIKNCKAQIKIRDGEMEVLTKEINKLEMKINDILDENEAL 497
Cdd:pfam02463 625 VEGILKDTElTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKK 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 498 RERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEEERLDLKRKIRQMAQERGKRNAASGLTIDDLNLSETF 577
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568967310 578 SH---ENKIEGRKLNFMSLNNMNETQSKNEFLSRELAEKEKDLERSRTVIAKFQSKLKELVEENKQLEEGMKEILQAI 652
Cdd:pfam02463 785 KLkveEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEE 862
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
78-748 |
9.26e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 9.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 78 EEQAKFENQLKTKVMKLENELEMAQQSAGGRDTRFLRDEIRQLEKQLEQKDRELEDmEKELDKEKKVNE----QLALRNE 153
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAED-AKRVEIARKAEDarkaEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 154 EAENENSKLR----RENEQLRQdiIDYQKQIDSQKESLLSRRGEDSdyRSQLSKKNYELVQYLDEIQTLTEANEKIEvqn 229
Cdd:PTZ00121 1174 DAKKAEAARKaeevRKAEELRK--AEDARKAEAARKAEEERKAEEA--RKAEDAKKAEAVKKAEEAKKDAEEAKKAE--- 1246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 230 qEMRKNLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRL-------QVRELTDLLKAKDEEDDPVMMAVNAK 302
Cdd:PTZ00121 1247 -EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeakkaeEKKKADEAKKKAEEAKKADEAKKKAE 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 303 VEEWKLILSSKDDEIIEYQQMLQSLRGKLKNAQLDADKSNIMALKQGIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLK 382
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 383 NELQKDKGTSNFYQQTHYMKIHSKVQILEEKTKEAERIAELAEADAREKDKELVEALKRLKDyesgvyglEDAVIEIKNC 462
Cdd:PTZ00121 1406 KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE--------EAKKADEAKK 1477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 463 KAQIKIRDGEMEVLTKEINKLEMKINDILDENEALRERAGLEPKTMIDLTEFRNSKRLKQQQYRAENQVLLKEIESLEE- 541
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEl 1557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 542 ERLDLKRKIRQMAQERGKRNAAsgltiddlnlSETFSHENKIEGRKLNFMSLNNMNETQSKNEFLSRELAEKEKDLErsr 621
Cdd:PTZ00121 1558 KKAEEKKKAEEAKKAEEDKNMA----------LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE--- 1624
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 622 tviAKFQSKLKELVEENKQLEEGMKEILQAIKDMPKDSDVKGGEtsliipslERLVNAMESKNAEGIFDASLHLKAQVDQ 701
Cdd:PTZ00121 1625 ---LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE--------EAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 568967310 702 LTGRNEELR--QELRQSRKEAVNYSQQLVKA----NLKIDHLEKETDLLRQSA 748
Cdd:PTZ00121 1694 LKKEAEEAKkaEELKKKEAEEKKKAEELKKAeeenKIKAEEAKKEAEEDKKKA 1746
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
349-647 |
9.65e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 9.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 349 GIQERDSQIKMLTEQVEQYTKEMEKNTFIIEDLKN----------------ELQKDKGTSNFYQQTHYMKIH--SKVQI- 409
Cdd:TIGR02169 164 GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQqlerlrrerekaeryqALLKEKREYEGYELLKEKEALerQKEAIe 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 410 --LEEKTKEAERIAELAEADARE---KDKELVEALKRLKDYESGVYG-----LEDAVIEIKNCKAQIKIRDGEMEVLTKE 479
Cdd:TIGR02169 244 rqLASLEEELEKLTEEISELEKRleeIEQLLEELNKKIKDLGEEEQLrvkekIGELEAEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 480 INKLEMKINDILDENEALRERAGLEPKTMIDLT-EFRNSK--------------------RLKQQQYRAENQVLLKEIES 538
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTeEYAELKeeledlraeleevdkefaetRDELKDYREKLEKLKREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 539 LEEERLDLKRKIRQMAQERGKrnaasgltiddlnlsetfsHENKIEGRKlnfmslNNMNETQSKNEFLSRELAEKEKDLE 618
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELAD-------------------LNAAIAGIE------AKINELEEEKEDKALEIKKQEWKLE 458
|
330 340
....*....|....*....|....*....
gi 568967310 619 RSRTVIAKFQSKLKELVEENKQLEEGMKE 647
Cdd:TIGR02169 459 QLAADLSKYEQELYDLKEEYDRVEKELSK 487
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
78-563 |
9.75e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 9.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 78 EEQAKFENQLKTKVMKLENELEMAQQ-SAGGRDTRFLRDEIRQLEKQLEQKDRELEDMEKELDKEKKVNEQLalrnEEAE 156
Cdd:PRK03918 269 EELKKEIEELEEKVKELKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL----EELK 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 157 NENSKLRRENEQLRQDIIDYQ--KQIDSQKESLLSRRGEdsdyrsqlskknyelvqyldeiqtltEANEKIEVQNQEMRK 234
Cdd:PRK03918 345 KKLKELEKRLEELEERHELYEeaKAKKEELERLKKRLTG--------------------------LTPEKLEKELEELEK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 235 NLEESVQEMEKMTDEYNRMKALVHQSDAVMDQIKKENEHYRLQVRELTdllkakdEEDDPVMMavnakvEEWKLILSSKD 314
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT-------EEHRKELL------EEYTAELKRIE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 315 DEIIEYQQMLQSLRGKLKNAQ-LDADKSNIMALKQGIQerdsQIKMLTEQVEQYTKE-MEKNTFIIEDLKNELQKDKGts 392
Cdd:PRK03918 466 KELKEIEEKERKLRKELRELEkVLKKESELIKLKELAE----QLKELEEKLKKYNLEeLEKKAEEYEKLKEKLIKLKG-- 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 393 nfyQQTHYMKIHSKVQILEEKTKEAERIAELAEADAREKDKELVE-ALKRLKDYESGVYGLEDA---VIEIKNCKAQIKI 468
Cdd:PRK03918 540 ---EIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEElGFESVEELEERLKELEPFyneYLELKDAEKELER 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568967310 469 RDGEMEVLTKEINKLEMKINDILDENEALRERAGlEPKTMIDLTEFRNsKRLKQQQYRAENQVLLKEIESLEEERLDLKR 548
Cdd:PRK03918 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELE-ELEKKYSEEEYEE-LREEYLELSRELAGLRAELEELEKRREEIKK 694
|
490
....*....|....*
gi 568967310 549 KIRQMAQERGKRNAA 563
Cdd:PRK03918 695 TLEKLKEELEEREKA 709
|
|
| |
