|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1263-1619 |
1.00e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 100.01 E-value: 1.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1263 IRTEQQAALQRLREEAETLQKAERASLEQKSRRA------LEQLREQLEAEERSAqaalraekeaekeaallqlrEQLEG 1336
Cdd:COG1196 194 ILGELERQLEPLERQAEKAERYRELKEELKELEAellllkLRELEAELEELEAEL--------------------EELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1337 ERKEAVAGLEKKHsAELEQlcssLEAKHQEvissLQKKIEGAQQKEEAQLQESLGWAEQRAHqkvhqvteyEQELSSLLR 1416
Cdd:COG1196 254 ELEELEAELAELE-AELEE----LRLELEE----LELELEEAQAEEYELLAELARLEQDIAR---------LEERRRELE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1417 DKRQEVEREHERKMDKMKEEHwQEMADARERYEAEERKQRadllghltgELERLRRAHERELESMRQEQDQQLEDLRRRH 1496
Cdd:COG1196 316 ERLEELEEELAELEEELEELE-EELEELEEELEEAEEELE---------EAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1497 RDHERKLQDLEvELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEAtatHQHLEEAKKEHTHLLETKQQL 1576
Cdd:COG1196 386 EELLEALRAAA-ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE---EEALEEAAEEEAELEEEEEAL 461
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 568959095 1577 RRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQ 1619
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1208-1654 |
3.49e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 88.46 E-value: 3.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1208 QQKEKSLSLLKAQLQKATAEEKEKEEETKIREEESRRLVCLRAQVQSRTEAFENQIRTEQQAALQRLREEAETLQKAERA 1287
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1288 SLEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKEAALLQLREQLEGERKEAVAGLEKKHSAELEQLCSSLEAKHQEV 1367
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1368 ISSLQKKIEGAQQKEEAQLQ-------ESLGWAEQRAHQKVHQVT-----------EYEQELSSLLRDKRQEVEREHERK 1429
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEaeadyegFLEGVKAALLLAGLRGLAgavavligveaAYEAALEAALAAALQNIVVEDDEV 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1430 MDKMKEEHWQEMADARERY---EAEERKQRADLLGHLTGELERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDL 1506
Cdd:COG1196 559 AAAAIEYLKAAKAGRATFLpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1507 EVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRRtiddlrvr 1586
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA-------- 710
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568959095 1587 rvELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNASPHPEPgLHIEDLRKSLDTNKNQ 1654
Cdd:COG1196 711 --EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP-PDLEELERELERLERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1249-1750 |
8.64e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.91 E-value: 8.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1249 RAQVQSRTEAFENQIRtEQQAALQRLREEAETLQKAERASLEQKSR--RALEQLREQL-EAEERSAQAALRAEKEAEKEA 1325
Cdd:COG1196 255 LEELEAELAELEAELE-ELRLELEELELELEEAQAEEYELLAELARleQDIARLEERRrELEERLEELEEELAELEEELE 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1326 ALLQLREQLEGERKEAVAGLE--KKHSAELEQLCSSLEAKHQEVISSLQ--KKIEGAQQKEEAQLQESLGWAEQRAHQKV 1401
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEeaEAELAEAEEALLEAEAELAEAEEELEelAEELLEALRAAAELAAQLEELEEAEEALL 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1402 HQVTEYEQELSSLLRDKRQEVEREHERKMDKMKEEHWQEMADARER-------YEAEERKQRADLLGHLTGELERLRRAH 1474
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEallellaELLEEAALLEAALAELLEELAEAAARL 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1475 ERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVK--------ARLAQLNVQEENIRKEKQLLLDAQRQAA 1546
Cdd:COG1196 494 LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEaaleaalaAALQNIVVEDDEVAAAAIEYLKAAKAGR 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1547 LEREEATATHQHLEEAKKEHTHLLETKQQLRRtiDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMA 1626
Cdd:COG1196 574 ATFLPLDKIRARAALAAALARGAIGAAVDLVA--SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1627 AEMNASPHPEPGLHIEDLRKSLDTNKNQEVSSSLSLSKEEIDLSMESVRQFLSAEGVAVRNAKEFLVRQTRSMRRRQTAL 1706
Cdd:COG1196 652 EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 568959095 1707 KAAQQH----WRHELASAQEVDEDLPGTEVLGNMRKNLNEETRHLDEM 1750
Cdd:COG1196 732 AEREELleelLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1266-1781 |
8.99e-16 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 83.81 E-value: 8.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1266 EQQAALQRLREEAETLQkAERASLEQKsRRALEQLREQLEAEERSAQAALRAEKEAEKEAaLLQLREQLEGERKEAvagl 1345
Cdd:COG4913 285 FAQRRLELLEAELEELR-AELARLEAE-LERLEARLDALREELDELEAQIRGNGGDRLEQ-LEREIERLERELEER---- 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1346 eKKHSAELEQLCSSLEAKHQEVISSLQKKIEGAQQ------KEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSLLRDK- 1418
Cdd:COG4913 358 -ERRRARLEALLAALGLPLPASAEEFAALRAEAAAllealeEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKs 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1419 ---------RQEVERE---HERKMD--------KMKEEHWQ---EM----------------ADARERYEAEERKQRADL 1459
Cdd:COG4913 437 niparllalRDALAEAlglDEAELPfvgelievRPEEERWRgaiERvlggfaltllvppehyAAALRWVNRLHLRGRLVY 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1460 LG-HLTGELERLRRAHEREL----------------ESMRQEQD-------QQLEDLRR-------------RHR----- 1497
Cdd:COG4913 517 ERvRTGLPDPERPRLDPDSLagkldfkphpfrawleAELGRRFDyvcvdspEELRRHPRaitragqvkgngtRHEkddrr 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1498 ----------DHERKLQDLEVE---LSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAAlEREEATATHQHLEEAKK 1564
Cdd:COG4913 597 rirsryvlgfDNRAKLAALEAElaeLEEELAEAEERLEALEAELDALQERREALQRLAEYSW-DEIDVASAEREIAELEA 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1565 EHTHLLETK---QQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKemAAEMNASPHPEPGLhi 1641
Cdd:COG4913 676 ELERLDASSddlAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE--AAEDLARLELRALL-- 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1642 EDLRKSLDtnknqevssslslskeeIDLSMESVRQFLSAEgvaVRNAKEFLVRQTRSMRRrqtALKAAQQHWRHELASAQ 1721
Cdd:COG4913 752 EERFAAAL-----------------GDAVERELRENLEER---IDALRARLNRAEEELER---AMRAFNREWPAETADLD 808
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568959095 1722 EVDEDLPGTEvlgNMRKNLNEE--TRHLDEMKSAmrkghdLLKKKEEKLIQLESSLQEEVSD 1781
Cdd:COG4913 809 ADLESLPEYL---ALLDRLEEDglPEYEERFKEL------LNENSIEFVADLLSKLRRAIRE 861
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1242-1792 |
3.02e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 82.50 E-value: 3.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1242 SRRLVCLRAQVQSRTEAFENQIRTEQQAALQRLREEA---ETLQKAERASLEQKSRRALEQLREQleaEERSAQAALRAE 1318
Cdd:PTZ00121 1103 AKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDArkaEEARKAEDAKRVEIARKAEDARKAE---EARKAEDAKKAE 1179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1319 KEAEKeaalLQLREQLEGERKEAVAGLEKKHSAELEQLCSslEAKHQEVisslQKKIEGAQQKEEAQLQESlgwaEQRAH 1398
Cdd:PTZ00121 1180 AARKA----EEVRKAEELRKAEDARKAEAARKAEEERKAE--EARKAED----AKKAEAVKKAEEAKKDAE----EAKKA 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1399 QKV---HQVTEYEQELSSLLRDKRQEVEREHERKMDKMKEEHWQEMAD----ARERYEAEERKQRAdllghltgelERLR 1471
Cdd:PTZ00121 1246 EEErnnEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADeakkAEEKKKADEAKKKA----------EEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1472 RAHerELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQlLLDAQRQAALEREE 1551
Cdd:PTZ00121 1316 KAD--EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK-KADAAKKKAEEKKK 1392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1552 ATATHQHLEEAKKEHTHlLETKQQLRRTIDDLRVRRVELEsqvdllqaQSQRLQKhlsslEAEVQRKQDVLKEMAAEmnA 1631
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADE-LKKAAAAKKKADEAKKKAEEKK--------KADEAKK-----KAEEAKKADEAKKKAEE--A 1456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1632 SPHPEPGLHIEDLRKSLDTNKNQEVSSSLSLSKEEIDLSMESVRQFLSAEGvAVRNAKEflVRQTRSMRRRQTALKAAQQ 1711
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE-AKKKADE--AKKAEEAKKADEAKKAEEA 1533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1712 HWRHELASAQEV---DEDLPGTEVLGNMRKNLNEETRHLDEMKSAMRKGHDLLKKKEEKLIQLESSLQEEvsdEDTLKGS 1788
Cdd:PTZ00121 1534 KKADEAKKAEEKkkaDELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE---EKKMKAE 1610
|
....
gi 568959095 1789 SIKK 1792
Cdd:PTZ00121 1611 EAKK 1614
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1249-1778 |
1.20e-14 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 80.01 E-value: 1.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1249 RAQVQSRTEAFENQIRTEQQAALQRLREEAEtlqkaeraSLEQKSRRalEQLREQLEAEERSAQAALraekeaekeAALL 1328
Cdd:TIGR00618 220 RKQVLEKELKHLREALQQTQQSHAYLTQKRE--------AQEEQLKK--QQLLKQLRARIEELRAQE---------AVLE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1329 QLREQLEGERKEAVAGLEKKHSAELEQ----LCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVHQv 1404
Cdd:TIGR00618 281 ETQERINRARKAAPLAAHIKAVTQIEQqaqrIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRD- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1405 tEYEQELSSLLRDKRQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQ---------RADLLGHL----TGELERLR 1471
Cdd:TIGR00618 360 -AHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQatidtrtsaFRDLQGQLahakKQQELQQR 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1472 RAHERELESMRQEQDQQLE-----DLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIR--KEKQLLLDAQRQ 1544
Cdd:TIGR00618 439 YAELCAAAITCTAQCEKLEkihlqESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCplCGSCIHPNPARQ 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1545 AALEREEATATHQHLEEAKKEHTHLLETkqqLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEV----QRKQD 1620
Cdd:TIGR00618 519 DIDNPGPLTRRMQRGEQTYAQLETSEED---VYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIpnlqNITVR 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1621 VLKEMAAEMNASPHPEPGLHIEDLRKSLDTNkNQEVSSSLSLSKEEIDLSMESVRQFLSA-----EGVAVRNAKEFlvrQ 1695
Cdd:TIGR00618 596 LQDLTEKLSEAEDMLACEQHALLRKLQPEQD-LQDVRLHLQQCSQELALKLTALHALQLTltqerVREHALSIRVL---P 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1696 TRSMRRRQTALKAAQqhwrHELASAQEVDEDLPGT-EVLGNMRKNLNEETRHLDEMKSAMRKGHDLLKKKEEKLIQLESS 1774
Cdd:TIGR00618 672 KELLASRQLALQKMQ----SEKEQLTYWKEMLAQCqTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKE 747
|
....
gi 568959095 1775 LQEE 1778
Cdd:TIGR00618 748 LMHQ 751
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1242-1799 |
1.40e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 80.19 E-value: 1.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1242 SRRLVCLRAQVQSRTEAFEnqiRTEQQAALQRLREeAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEA 1321
Cdd:PTZ00121 1266 ARRQAAIKAEEARKADELK---KAEEKKKADEAKK-AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA 1341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1322 EKEAALLQLREqlEGERKEAVAGLEKKHSAELEQlcssleakhqeviSSLQKKIEGAQQK-EEAQLQESLGWAEQRAHQK 1400
Cdd:PTZ00121 1342 KKAAEAAKAEA--EAAADEAEAAEEKAEAAEKKK-------------EEAKKKADAAKKKaEEKKKADEAKKKAEEDKKK 1406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1401 VHQVTEYEQElssllRDKRQEVER--EHERKMDKMKEEhwqemadARERYEAEERKQRADLLGHLTGELERLRRAHEREL 1478
Cdd:PTZ00121 1407 ADELKKAAAA-----KKKADEAKKkaEEKKKADEAKKK-------AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1479 ESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATHQH 1558
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1559 LEEAKKEHTHLLETKqqlRRTIDDlrvRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEmaAEmnasphpEPG 1638
Cdd:PTZ00121 1555 EELKKAEEKKKAEEA---KKAEED---KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK--AE-------EAK 1619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1639 LHIEDLRKSLDTNKNQEvssSLSLSKEEIDLSMESVRQflSAEGVAVRnaKEFLVRQTRSMRRRQTALKAAQQHWRHELA 1718
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVE---QLKKKEAEEKKKAEELKK--AEEENKIK--AAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1719 SAQEVDEDLPGTEvlgNMRKNLNEETRHLDEMKSA------------------MRKGHDLLKKKEEK------------- 1767
Cdd:PTZ00121 1693 ALKKEAEEAKKAE---ELKKKEAEEKKKAEELKKAeeenkikaeeakkeaeedKKKAEEAKKDEEEKkkiahlkkeeekk 1769
|
570 580 590
....*....|....*....|....*....|....*.
gi 568959095 1768 ----LIQLESSLQEEVSDEDTLKGSSIKKVTFDLSD 1799
Cdd:PTZ00121 1770 aeeiRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFD 1805
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1208-1777 |
1.53e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 1.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1208 QQKEKSLSLLKAQLQKATAEEKEKEEETKIREEESRRLVCLRAQVQSRTEAFENQIRTEQQAALQRLREEAetLQKAERA 1287
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA--SLNNEIE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1288 SLEQK---SRRALEQLREQLEAEERSAQAAlRAEKEAEKEAALLQLREQLEGERKEAVAGLE--KKHSAELEQLCSSLEA 1362
Cdd:TIGR02168 404 RLEARlerLEDRRERLQQEIEELLKKLEEA-ELKELQAELEELEEELEELQEELERLEEALEelREELEEAEQALDAAER 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1363 KHQEVIS------SLQKKIEGAQQ--KEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSLLRDKRQEVE----------- 1423
Cdd:TIGR02168 483 ELAQLQArldsleRLQENLEGFSEgvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVvenlnaakkai 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1424 ---REHE--------------------RKMDKMKEEHWQEMADARERYEAEERKQRADLLGH------LTGELERLRRAH 1474
Cdd:TIGR02168 563 aflKQNElgrvtflpldsikgteiqgnDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGvlvvddLDNALELAKKLR 642
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1475 EREL----------------------ESMRQEQDQQLEDLRRR-------HRDHERKLQDLEVELSSRTKDVKARLAQLN 1525
Cdd:TIGR02168 643 PGYRivtldgdlvrpggvitggsaktNSSILERRREIEELEEKieeleekIAELEKALAELRKELEELEEELEQLRKELE 722
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1526 VQEENIRKEKQLLLDAQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQ 1605
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1606 KHLSSLEAEVQRKQDVL--KEMAAEMNASPHPEPGLHIEDLRKSLDTNKNQEVSSSLSLSKEEIDL--------SMESVR 1675
Cdd:TIGR02168 803 EALDELRAELTLLNEEAanLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIeeleseleALLNER 882
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1676 QFLSAEGVAVRNAKEFLVRQTRSMRRRQTALKAAQQHWRHELASAQevdEDLPGTEV-LGNMRKNLNEETR-HLDEMKSA 1753
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE---LRLEGLEVrIDNLQERLSEEYSlTLEEAEAL 959
|
650 660
....*....|....*....|....
gi 568959095 1754 MRKGHDLLKKKEEKLIQLESSLQE 1777
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1238-1583 |
3.73e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.56 E-value: 3.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1238 REEESRRLVCLRAQVQSRTEAFEnQIRTEQQAALQRLREEAETLQKAERASlEQKSRRALEQLREQLEAEERSAQAALRA 1317
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELE-QLRKELEELSRQISALRKDLARLEAEV-EQLEERIAQLSKELTELEAEIEELEERL 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1318 EKEAEKEAALLQLREQLEGErkeaVAGLEKKHSAELEQLcSSLEAKHQEVISSLQKKIEGAQ--QKEEAQLQESLGWAEQ 1395
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEAQ----IEQLKEELKALREAL-DELRAELTLLNEEAANLRERLEslERRIAATERRLEDLEE 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1396 RAHQKVHQVTEYEQELSSlLRDKRQEVEREHERKmDKMKEEHWQEMADARERYEAEERKQRADL--LGHLTGELERLRR- 1472
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEE-LEELIEELESELEAL-LNERASLEEALALLRSELEELSEELRELEskRSELRRELEELREk 923
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1473 --AHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNvqeeniRKEKQL---LLDAQrqaal 1547
Cdd:TIGR02168 924 laQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE------NKIKELgpvNLAAI----- 992
|
330 340 350
....*....|....*....|....*....|....*.
gi 568959095 1548 erEEATATHQHLEEAKKEHTHLLETKQQLRRTIDDL 1583
Cdd:TIGR02168 993 --EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1254-1583 |
8.07e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.42 E-value: 8.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1254 SRTEAFENQIRTEQQAALQRLREEAETLqKAERASLEQKSRRaLEQLREQLEAEERSAQAALRAEKEAekeaallqlREQ 1333
Cdd:TIGR02169 659 SRAPRGGILFSRSEPAELQRLRERLEGL-KRELSSLQSELRR-IENRLDELSQELSDASRKIGEIEKE---------IEQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1334 LEGERKEAVAGLEkkhsaELEQLCSSLEAKHQEVISSLQKKIEGAQQKEE--AQLQESLGWAEQR-AHQKVHQVT----- 1405
Cdd:TIGR02169 728 LEQEEEKLKERLE-----ELEEDLSSLEQEIENVKSELKELEARIEELEEdlHKLEEALNDLEARlSHSRIPEIQaelsk 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1406 --EYEQELSSLLRDKRQEVEREHERK--MDKMKEEHWQEMADARERyEAEERKQRADL---------------------- 1459
Cdd:TIGR02169 803 leEEVSRIEARLREIEQKLNRLTLEKeyLEKEIQELQEQRIDLKEQ-IKSIEKEIENLngkkeeleeeleeleaalrdle 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1460 --LGHLTGELERLRrAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKA-------RLAQLNVQEEN 1530
Cdd:TIGR02169 882 srLGDLKKERDELE-AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEdeeipeeELSLEDVQAEL 960
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 568959095 1531 IRKEKQL--LLDAQRQAALEREEATAThqhLEEAKKEHTHLLETKQQLRRTIDDL 1583
Cdd:TIGR02169 961 QRVEEEIraLEPVNMLAIQEYEEVLKR---LDELKEKRAKLEEERKAILERIEEY 1012
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1260-1611 |
2.88e-13 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 75.76 E-value: 2.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1260 ENQIRTEQQAaLQRLREEAETLqKAERASLEQksrrALEQLREQLEaeerSAQAALRAEKEAEK-EAALLQLREQLEgER 1338
Cdd:PRK04863 299 RRQLAAEQYR-LVEMARELAEL-NEAESDLEQ----DYQAASDHLN----LVQTALRQQEKIERyQADLEELEERLE-EQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1339 KEAVAGL--------EKKHSAELEQLC--SSLeAKHQEVISSLQKKIEGAQQKEEAqLQESLGWAeQRAHQKVHQVTEYE 1408
Cdd:PRK04863 368 NEVVEEAdeqqeeneARAEAAEEEVDElkSQL-ADYQQALDVQQTRAIQYQQAVQA-LERAKQLC-GLPDLTADNAEDWL 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1409 QELssllRDKRQEVE---REHERKMDkmkeehwqeMAD-ARERYEaeerkQRADLLGHLTGELERLR-----RAHERELE 1479
Cdd:PRK04863 445 EEF----QAKEQEATeelLSLEQKLS---------VAQaAHSQFE-----QAYQLVRKIAGEVSRSEawdvaRELLRRLR 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1480 SMRQeQDQQLEDLRRRHRDHERKLQdLEVELSSRTKDVKARLAQ-----LNVQEENIRKEkQLLLDAQRQAALEREEATA 1554
Cdd:PRK04863 507 EQRH-LAEQLQQLRMRLSELEQRLR-QQQRAERLLAEFCKRLGKnlddeDELEQLQEELE-ARLESLSESVSEARERRMA 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1555 THQHLEEAKKEHTHL------------------------LETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSS 1610
Cdd:PRK04863 584 LRQQLEQLQARIQRLaarapawlaaqdalarlreqsgeeFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIER 663
|
.
gi 568959095 1611 L 1611
Cdd:PRK04863 664 L 664
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1338-1729 |
2.61e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 2.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1338 RKEAVAGLEK--KHSAELEQLCSSLEAKhqevISSLQKKIEGAQQKEEAQlqeslgwAEQRAHQK---VHQVTEYEQELS 1412
Cdd:TIGR02168 174 RKETERKLERtrENLDRLEDILNELERQ----LKSLERQAEKAERYKELK-------AELRELELallVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1413 SLlRDKRQEVEREHERKMDKMKEEHwQEMADAR-ERYEAEERKQradllgHLTGELERLRRAHEReLESMRQEQDQQLED 1491
Cdd:TIGR02168 243 EL-QEELKEAEEELEELTAELQELE-EKLEELRlEVSELEEEIE------ELQKELYALANEISR-LEQQKQILRERLAN 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1492 LRRRHRDHERKLQDLEvelsSRTKDVKARLAQLNVQEENIRKEKQLLLDAqrqaalereeatathqhLEEAKKEHTHLLE 1571
Cdd:TIGR02168 314 LERQLEELEAQLEELE----SKLDELAEELAELEEKLEELKEELESLEAE-----------------LEELEAELEELES 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1572 TKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVlkemaaemnasphpepglhIEDLRKSLDTN 1651
Cdd:TIGR02168 373 RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQE-------------------IEELLKKLEEA 433
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568959095 1652 KNQEVSSSLSLSKEEIDLSMESVRqflsaegvAVRNAKEFLVRQTRSMRRRQTALKAAQQHWRHELASAQEVDEDLPG 1729
Cdd:TIGR02168 434 ELKELQAELEELEEELEELQEELE--------RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1257-1620 |
2.68e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 72.38 E-value: 2.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1257 EAFENQIRtEQQAALQRLREEAETLqkAERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKeaallQLREQLEG 1336
Cdd:PRK02224 275 EELAEEVR-DLRERLEELEEERDDL--LAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ-----AHNEEAES 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1337 ERKEAvAGLEKKhSAELEQLCSSLEA----------KHQEVISSLQKKIEGAQ--------QKEEAQ-LQESLGWAEQRA 1397
Cdd:PRK02224 347 LREDA-DDLEER-AEELREEAAELESeleeareaveDRREEIEELEEEIEELRerfgdapvDLGNAEdFLEELREERDEL 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1398 HQKvhqVTEYEQELSSlLRDKRQEVER-----------------EH----ERKMDKmKEEHWQEMADARERYEA-EERKQ 1455
Cdd:PRK02224 425 RER---EAELEATLRT-ARERVEEAEAlleagkcpecgqpvegsPHvetiEEDRER-VEELEAELEDLEEEVEEvEERLE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1456 RADLLGHLTGELERLRRAHER------ELESMRQEQDQQLEDLRRRHRDHERKLQDLE---VELSSRTKDVKARLAQLNV 1526
Cdd:PRK02224 500 RAEDLVEAEDRIERLEERREDleeliaERRETIEEKRERAEELRERAAELEAEAEEKReaaAEAEEEAEEAREEVAELNS 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1527 QEENIRKEKQLLLDAQRQAAlEREEATATHQHLEEAKKehtHLLETKQQLRRTIDDLRVRRVELESQVD-----LLQAQS 1601
Cdd:PRK02224 580 KLAELKERIESLERIRTLLA-AIADAEDEIERLREKRE---ALAELNDERRERLAEKRERKRELEAEFDearieEAREDK 655
|
410
....*....|....*....
gi 568959095 1602 QRLQKHLSSLEAEVQRKQD 1620
Cdd:PRK02224 656 ERAEEYLEQVEEKLDELRE 674
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1266-1628 |
3.12e-12 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 71.72 E-value: 3.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1266 EQQAALQRLREEAETLQKAerasleQKSRRALEQLREQLEAEERSAQAALRAEKEAEKEAALLQLREQLEGERKEAVAGL 1345
Cdd:COG4717 75 ELEEELKEAEEKEEEYAEL------QEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1346 E--KKHSAELEQLCSSLEAKHQEvISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSL---LRDKRQ 1420
Cdd:COG4717 149 EelEERLEELRELEEELEELEAE-LAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAqeeLEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1421 EVEREHERKMDKMKEEHWQEMA-------------------------------------------DARERYEAEERKQRA 1457
Cdd:COG4717 228 ELEQLENELEAAALEERLKEARlllliaaallallglggsllsliltiagvlflvlgllallfllLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1458 DLLGHLTG----ELERLRRAH--------ERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKA------ 1519
Cdd:COG4717 308 QALPALEEleeeELEELLAALglppdlspEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVedeeel 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1520 RLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQA 1599
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
410 420
....*....|....*....|....*....
gi 568959095 1600 QSQrlqkhLSSLEAEVQRKQDVLKEMAAE 1628
Cdd:COG4717 468 DGE-----LAELLQELEELKAELRELAEE 491
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1359-1777 |
4.17e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 71.61 E-value: 4.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1359 SLEAKHQEVISSLQKKIEGaqqKEEAQLQESLGWAEQRAHQKVHQVTEYE--QELSSLLRDKRQEVEREHERKMDKMkEE 1436
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEE---KEEKDLHERLNGLESELAELDEEIERYEeqREQARETRDEADEVLEEHEERREEL-ET 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1437 HWQEMADARERYEAEERKQRAdllghLTGELERLRRAHErELESMRQE--QDQQLEDL-RRRHRDHERKLQDLEVELSSR 1513
Cdd:PRK02224 256 LEAEIEDLRETIAETEREREE-----LAEEVRDLRERLE-ELEEERDDllAEAGLDDAdAEAVEARREELEDRDEELRDR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1514 TKDVKARLAQLNVQEENIRKEkqlLLDAQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLR-------VR 1586
Cdd:PRK02224 330 LEECRVAAQAHNEEAESLRED---ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRerfgdapVD 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1587 RVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNASPHPEPGLHIEDLRKSLDTNKNQEVSSSLSLSKEE 1666
Cdd:PRK02224 407 LGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELED 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1667 IDLSMESVRQFLSAEGVAVRNAKEFlvrqTRSMRRRQTALKAAQQHwrhelasAQEVDEDlpgTEVLGNMRKNLNEETRH 1746
Cdd:PRK02224 487 LEEEVEEVEERLERAEDLVEAEDRI----ERLEERREDLEELIAER-------RETIEEK---RERAEELRERAAELEAE 552
|
410 420 430
....*....|....*....|....*....|.
gi 568959095 1747 LDEMKSAMRKGHDLLKKKEEKLIQLESSLQE 1777
Cdd:PRK02224 553 AEEKREAAAEAEEEAEEAREEVAELNSKLAE 583
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1269-1768 |
6.84e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 71.10 E-value: 6.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1269 AALQRLREEAETLQKAERASLE-QKSRRALEQLREQLE-----AEERSAQAALRAEKEAEKEAALLQLREQLEGERKEAV 1342
Cdd:COG4913 225 EAADALVEHFDDLERAHEALEDaREQIELLEPIRELAEryaaaRERLAELEYLRAALRLWFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1343 AGLEkkhsAELEQLcSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSLlrdkrqEV 1422
Cdd:COG4913 305 ARLE----AELERL-EARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAAL------GL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1423 EREHERKMDKMKEEHWQEMADARERYEAEERKQRAdllghltgELERLRRAHERELESMRQEqdqqLEDLRRRHRDHERK 1502
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALEEALA--------EAEAALRDLRRELRELEAE----IASLERRKSNIPAR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1503 LQDLEVELSSRTKDVKARL---AQL-NVQEENIRKEK-----------QLLLDAQRQAA---------------LEREEA 1552
Cdd:COG4913 442 LLALRDALAEALGLDEAELpfvGELiEVRPEEERWRGaiervlggfalTLLVPPEHYAAalrwvnrlhlrgrlvYERVRT 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1553 TATHQHLEEAK----------KEHT------HLL---------ETKQQLRRT------------------IDDLRVRRVE 1589
Cdd:COG4913 522 GLPDPERPRLDpdslagkldfKPHPfrawleAELgrrfdyvcvDSPEELRRHpraitragqvkgngtrheKDDRRRIRSR 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1590 L------ESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNA----SPHPEPGLHIEDLRKSLDTNKNQevsss 1659
Cdd:COG4913 602 YvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlqrlAEYSWDEIDVASAEREIAELEAE----- 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1660 lslsKEEIDLSMESVRQfLSAEGVAVRNAKEFLVRQTRSMRRRQTALKAAQQHWRHELASAQEVDEDLPGTEV------L 1733
Cdd:COG4913 677 ----LERLDASSDDLAA-LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelralL 751
|
570 580 590
....*....|....*....|....*....|....*
gi 568959095 1734 GNMRKNLNEEtRHLDEMKSAMRKGHDLLKKKEEKL 1768
Cdd:COG4913 752 EERFAAALGD-AVERELRENLEERIDALRARLNRA 785
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1274-1800 |
7.16e-12 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 70.97 E-value: 7.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1274 LREEAETLQKAERASLEQKSR-RALEQ----LREQLEAEERSAQAALRAEKEAEKEaaLLQLREQLEGErKEAVAGLE-- 1346
Cdd:pfam01576 470 LQDTQELLQEETRQKLNLSTRlRQLEDernsLQEQLEEEEEAKRNVERQLSTLQAQ--LSDMKKKLEED-AGTLEALEeg 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1347 -KKHSAELEQLCSSLEAKHQEViSSLQKKIEGAQQKEEAQL-----QESLGWAEQRAHQKVHQVTEYEQELSSLLRDKRQ 1420
Cdd:pfam01576 547 kKRLQRELEALTQQLEEKAAAY-DKLEKTKNRLQQELDDLLvdldhQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERD 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1421 EVE---REHERKMDKMKEEhWQEMADARERYEAEERKQRADL---------LGHLTGELERLRRAHERELESMRqEQDQQ 1488
Cdd:pfam01576 626 RAEaeaREKETRALSLARA-LEEALEAKEELERTNKQLRAEMedlvsskddVGKNVHELERSKRALEQQVEEMK-TQLEE 703
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1489 LEDLRRRHRD---------------HERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEA- 1552
Cdd:pfam01576 704 LEDELQATEDaklrlevnmqalkaqFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELe 783
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1553 ---TATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVEL-------ESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVL 1622
Cdd:pfam01576 784 aqiDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEIlaqskesEKKLKNLEAELLQLQEDLAASERARRQAQQER 863
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1623 KEMAAEMNASPHPEPGLHIEDLRKSLDTNKNQEVSSSLSLSKEEID-------LSMESVRQFLSAEGVA---VRNAKEFL 1692
Cdd:pfam01576 864 DELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNdrlrkstLQVEQLTTELAAERSTsqkSESARQQL 943
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1693 VRQTRSMRRR--------QTALKAAQQHWRHELASA-----QEVDEDLPGTEVLGNMRKNLNE-------ETRHLDEMKS 1752
Cdd:pfam01576 944 ERQNKELKAKlqemegtvKSKFKSSIAALEAKIAQLeeqleQESRERQAANKLVRRTEKKLKEvllqvedERRHADQYKD 1023
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 568959095 1753 AMRKGHDLLKkkeekliQLESSLqEEVSDEDTLKGSSIKKVTFDLSDM 1800
Cdd:pfam01576 1024 QAEKGNSRMK-------QLKRQL-EEAEEEASRANAARRKLQRELDDA 1063
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1195-1629 |
7.53e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 7.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1195 EEEEEEEEVCQLYQQKEKSLSLLKAQLQKATAEEKEKEEETKIREEESRRLVcLRAQVQSRTEAFENQIRTEQQAALQRL 1274
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE-RLERLEEELEELEEALAELEEEEEEEE 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1275 REEAETLQKAERASLEQKS--RRALEQLREQLEAEERSAQAALRAEKEAEKEAALLQLREQLEGERKEAVAGLEKKHSAE 1352
Cdd:COG1196 442 EALEEAAEEEAELEEEEEAllELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1353 LEQLCSSL---EAKHQEVI-----SSLQKKI----EGAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSLLR---- 1416
Cdd:COG1196 522 LAGAVAVLigvEAAYEAALeaalaAALQNIVveddEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIgaav 601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1417 -----DKRQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRADLLGHLTGELERLRRAHERELESMRQEQDQQLED 1491
Cdd:COG1196 602 dlvasDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1492 LRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEkQLLLDAQRQAALEREEATATHQHLEEAKKEHTHLLE 1571
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE-ALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568959095 1572 TKQQLRRTIDDLRVRRVELESqVDLL-----QAQSQRLQkHLSS----LEAEVQRKQDVLKEMAAEM 1629
Cdd:COG1196 761 DLEELERELERLEREIEALGP-VNLLaieeyEELEERYD-FLSEqredLEEARETLEEAIEEIDRET 825
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1287-1629 |
1.25e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.48 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1287 ASLEQKSRRALEQLREQLEAEERsAQAALRAekeaekeaaLLQLREQLEGERKEAV---AGLEKKHSAELEQLCSSLEAk 1363
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIER-LDLIIDE---------KRQQLERLRREREKAEryqALLKEKREYEGYELLKEKEA- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1364 HQEVISSLQKKIEGaQQKEEAQLQEslgwaeqrahqkvhQVTEYEQELSSLLRDKRQEverehERKMDKMKEEhwqEMAD 1443
Cdd:TIGR02169 235 LERQKEAIERQLAS-LEEELEKLTE--------------EISELEKRLEEIEQLLEEL-----NKKIKDLGEE---EQLR 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1444 ARERyeaeerkqradlLGHLTGELERLRRAherelesmrqeqdqqLEDLRRRHRDHERKLQDLEVELSSrtkdVKARLAQ 1523
Cdd:TIGR02169 292 VKEK------------IGELEAEIASLERS---------------IAEKERELEDAEERLAKLEAEIDK----LLAEIEE 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1524 LNVQEENIRKEKQLLLDAQRQAALEREEataTHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQR 1603
Cdd:TIGR02169 341 LEREIEEERKRRDKLTEEYAELKEELED---LRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417
|
330 340
....*....|....*....|....*.
gi 568959095 1604 LQKHLSSLEAEVQRKQDVLKEMAAEM 1629
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKINELEEEK 443
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1275-1619 |
1.43e-11 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 69.77 E-value: 1.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1275 REEAETLQKAERASLEQKSRRALEQL--REQLEAEERSAQAALRAEKEAEKEaallQLREQLEGERkeavaglekkhsaE 1352
Cdd:pfam17380 287 RQQQEKFEKMEQERLRQEKEEKAREVerRRKLEEAEKARQAEMDRQAAIYAE----QERMAMERER-------------E 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1353 LEQLcsSLEAKHQEVISSLQKKIegAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELSsLLRDKRQEVEREHERKMDK 1432
Cdd:pfam17380 350 LERI--RQEERKRELERIRQEEI--AMEISRMRELERLQMERQQKNERVRQELEAARKVK-ILEEERQRKIQQQKVEMEQ 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1433 MkeehwqemadareRYEAEERKQRadllghltgELERLRRAHERELESMRQE-QDQQLEDLRRRHRDHERKLQDLEVEls 1511
Cdd:pfam17380 425 I-------------RAEQEEARQR---------EVRRLEEERAREMERVRLEeQERQQQVERLRQQEEERKRKKLELE-- 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1512 sRTKDVKARLAQLN--VQEENIRKEKQLLLDAQRQAAL------EREEATATHQHLEEAKKEHTHLLETKQqlRRTIDDL 1583
Cdd:pfam17380 481 -KEKRDRKRAEEQRrkILEKELEERKQAMIEEERKRKLlekemeERQKAIYEEERRREAEEERRKQQEMEE--RRRIQEQ 557
|
330 340 350
....*....|....*....|....*....|....*.
gi 568959095 1584 RVRRVELESQVDLLQAQSQRLQKhlsSLEAEVQRKQ 1619
Cdd:pfam17380 558 MRKATEERSRLEAMEREREMMRQ---IVESEKARAE 590
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1365-1778 |
2.35e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 69.32 E-value: 2.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1365 QEVISSLQKKIEGAQQ--KEEAQLQESLGWAEQRAHQKVHQVteyeQELSSLLRDKRQEVE--REHERKMDKMKEEHwqe 1440
Cdd:PRK03918 168 GEVIKEIKRRIERLEKfiKRTENIEELIKEKEKELEEVLREI----NEISSELPELREELEklEKEVKELEELKEEI--- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1441 madareryeAEERKQRADLLGHLTGELERLR---------RAHERELESMRQEQDQ---------QLEDLRRRHRDHERK 1502
Cdd:PRK03918 241 ---------EELEKELESLEGSKRKLEEKIReleerieelKKEIEELEEKVKELKElkekaeeyiKLSEFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1503 LQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQ-AALER-----EEATATHQHLEEAKKEHTHLleTKQQL 1576
Cdd:PRK03918 312 IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRlEELEErhelyEEAKAKKEELERLKKRLTGL--TPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1577 RRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQR-----------KQDVLKEMAAEMNASPHPEpglhIEDLR 1645
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcGRELTEEHRKELLEEYTAE----LKRIE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1646 KSLDTNKNQEVSSSLSLSKEEIDLSMEsvRQFLSAEGVA--VRNAKEFLvrqtrsmrrRQTALKAAQQHWRhelaSAQEV 1723
Cdd:PRK03918 466 KELKEIEEKERKLRKELRELEKVLKKE--SELIKLKELAeqLKELEEKL---------KKYNLEELEKKAE----EYEKL 530
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 568959095 1724 DEDLPGtevLGNMRKNLNEETRHLDEMKSAMRKGHDLLKKKEEKLIQLESSLQEE 1778
Cdd:PRK03918 531 KEKLIK---LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1413-1606 |
8.60e-11 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 67.10 E-value: 8.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1413 SLLRDKRQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRAdlLGHLTGELERLRRAHErELESMRQEQDQQLEDL 1492
Cdd:COG4717 45 AMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEE--YAELQEELEELEEELE-ELEAELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1493 RR--RHRDHERKLQDLEVELSS---RTKDVKARLAQLNVQEENIRKEKQLLLDAQRQ-AALEREEATATHQHLEEAKKEH 1566
Cdd:COG4717 122 EKllQLLPLYQELEALEAELAElpeRLEELEERLEELRELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEEL 201
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568959095 1567 THLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQK 1606
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL 241
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1140-1778 |
1.22e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 1.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1140 EDQRLLLEFQKEKPQQLEERLWREEEEKEEGEEEEKEDEEEEGEEEEEEEEKEEEEEEEEEEEvcqlyQQKEKSLSLLKA 1219
Cdd:PTZ00121 1068 QDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKA-----EEARKAEDARKA 1142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1220 QlQKATAEEKEKEEETKIREEESRRLVCLRAQVQSRTEAFENQIRTEQQAALQRLRE--------EAETLQKAERASLEQ 1291
Cdd:PTZ00121 1143 E-EARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDarkaeaarKAEEERKAEEARKAE 1221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1292 KSRRAlEQLREQLEAEERSAQAALRAEKEAEKEAALLQLREQLEGERKEAVAGLEKKHSAE----LEQLCSSLEAKHQEV 1367
Cdd:PTZ00121 1222 DAKKA-EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADelkkAEEKKKADEAKKAEE 1300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1368 IsslqKKIEGAQQK-EEAQLQESLGWAEQRAHQKVHQVTEYEQElssllRDKRQEVER-EHERKMDKMKEEHWQEMADAR 1445
Cdd:PTZ00121 1301 K----KKADEAKKKaEEAKKADEAKKKAEEAKKKADAAKKKAEE-----AKKAAEAAKaEAEAAADEAEAAEEKAEAAEK 1371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1446 ERyeaEERKQRADllgHLTGELERLRRAHerELESMRQEQDQQLEDLRRrhRDHERKLQDlevELSSRTKDVKaRLAQLN 1525
Cdd:PTZ00121 1372 KK---EEAKKKAD---AAKKKAEEKKKAD--EAKKKAEEDKKKADELKK--AAAAKKKAD---EAKKKAEEKK-KADEAK 1437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1526 VQEENIRKEKQLlldaqRQAALEREEATATHQHLEEAKKEHThlLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQ 1605
Cdd:PTZ00121 1438 KKAEEAKKADEA-----KKKAEEAKKAEEAKKKAEEAKKADE--AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1606 KHLSSLEAEVQRKQDVLK--EMAAEMNASPHPEPGLHIEDLRKSLDTNKNQEVSSSLSLSKEEIDLSMESVRqflsAEgv 1683
Cdd:PTZ00121 1511 KADEAKKAEEAKKADEAKkaEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK----AE-- 1584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1684 AVRNAKEFLVRQTRSMRRRQTALKAAQ-QHWRHELASAQEVDEDLPGTEVLGNMRKNLNEETRHLDEMKSAMR----KGH 1758
Cdd:PTZ00121 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEaKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEenkiKAA 1664
|
650 660
....*....|....*....|
gi 568959095 1759 DLLKKKEEKLIQLESSLQEE 1778
Cdd:PTZ00121 1665 EEAKKAEEDKKKAEEAKKAE 1684
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1193-1792 |
1.47e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1193 EEEEEEEeeevcqlyqQKEKSLSLLKaqlqkataeekekEEETKIREEESRRLVCLRAQVQSRTEAFEnqiRTEQQAALQ 1272
Cdd:PTZ00121 1239 AEEAKKA---------EEERNNEEIR-------------KFEEARMAHFARRQAAIKAEEARKADELK---KAEEKKKAD 1293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1273 RLReEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKEAALLQLREqlEGERKEAVAGLEKKHSAE 1352
Cdd:PTZ00121 1294 EAK-KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA--EAAADEAEAAEEKAEAAE 1370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1353 LEQlcssleakhqeviSSLQKKIEGAQQK-EEAQLQESLGWAEQRAHQKVHQVTEYEQElssllRDKRQEVER--EHERK 1429
Cdd:PTZ00121 1371 KKK-------------EEAKKKADAAKKKaEEKKKADEAKKKAEEDKKKADELKKAAAA-----KKKADEAKKkaEEKKK 1432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1430 MDKMKEEhwqemadARERYEAEERKQRAdllghltgelERLRRAHERElesMRQEQDQQLEDLRRRHrdHERKLQDlevE 1509
Cdd:PTZ00121 1433 ADEAKKK-------AEEAKKADEAKKKA----------EEAKKAEEAK---KKAEEAKKADEAKKKA--EEAKKAD---E 1487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1510 LSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEAtathqhlEEAKKEHThllETKQQLRRTIDDLR----V 1585
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA-------EEAKKADE---AKKAEEKKKADELKkaeeL 1557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1586 RRVELESQVDllQAQSQRLQKHLSSLEAEVQRKQDvlKEMAAEMNASPHPEPGLHIEDLRKSLDTN-KNQEVSSSLSLSK 1664
Cdd:PTZ00121 1558 KKAEEKKKAE--EAKKAEEDKNMALRKAEEAKKAE--EARIEEVMKLYEEEKKMKAEEAKKAEEAKiKAEELKKAEEEKK 1633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1665 EEIDLSMESVRQFLSAEgvAVRNAKEflvrqTRSMRRRQTALKAAQQHWRHELASAQEVDEDLPGTEVlgnmrKNLNEET 1744
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAE--ELKKAEE-----ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL-----KKEAEEA 1701
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 568959095 1745 RHLDEMKSA----MRKGHDLLKKKEEKLIQLESSLQEEvsDEDTLKGSSIKK 1792
Cdd:PTZ00121 1702 KKAEELKKKeaeeKKKAEELKKAEEENKIKAEEAKKEA--EEDKKKAEEAKK 1751
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1249-1566 |
1.56e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 66.33 E-value: 1.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1249 RAQVQSRTEAFENQIRTEQQAALQRLREEAETLQKAERASLE--QKSRRALEQLREQLEAEERS--AQAALRAEKEAEKE 1324
Cdd:COG4717 172 LAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEelEEAQEELEELEEELEQLENEleAAALEERLKEARLL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1325 AALLQLREQLEGERKEAVAGLEKKH-----SAELEQLCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQR--- 1396
Cdd:COG4717 252 LLIAAALLALLGLGGSLLSLILTIAgvlflVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALglp 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1397 AHQKVHQVTEYEQELSSLLRDKRQEVEREHERKMDKMKEE-----------------HWQEMADARERYEAEERKQRADL 1459
Cdd:COG4717 332 PDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEiaallaeagvedeeelrAALEQAEEYQELKEELEELEEQL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1460 LGHLTGELERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDvkARLAQLnvqeeniRKEKQLLL 1539
Cdd:COG4717 412 EELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED--GELAEL-------LQELEELK 482
|
330 340
....*....|....*....|....*..
gi 568959095 1540 DAQRQAALEREEATATHQHLEEAKKEH 1566
Cdd:COG4717 483 AELRELAEEWAALKLALELLEEAREEY 509
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1406-1625 |
3.56e-10 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 65.14 E-value: 3.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1406 EYEQELSSLLRDKRQEVEREHERKMDKM--------KEEHWQEMADARERYEAEERKQRA-DLLGHLTGELERLRRAHER 1476
Cdd:pfam17380 269 EFLNQLLHIVQHQKAVSERQQQEKFEKMeqerlrqeKEEKAREVERRRKLEEAEKARQAEmDRQAAIYAEQERMAMERER 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1477 ELESMRQEQ-DQQLEDLRRRHRDHE----RKLQDLEVELSSRTKDVKARLaqlnvqeENIRKEKQLLLDAQRQAALEREE 1551
Cdd:pfam17380 349 ELERIRQEErKRELERIRQEEIAMEisrmRELERLQMERQQKNERVRQEL-------EAARKVKILEEERQRKIQQQKVE 421
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568959095 1552 ATATHQHLEEAKKEHTHLLETKqqlrRTIDDLRVRRVELE--SQVDLLQAQSQRLQKHLSSLEAEvQRKQDVLKEM 1625
Cdd:pfam17380 422 MEQIRAEQEEARQREVRRLEEE----RAREMERVRLEEQErqQQVERLRQQEEERKRKKLELEKE-KRDRKRAEEQ 492
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1248-1656 |
3.92e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 65.24 E-value: 3.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1248 LRAQVQSRTEAFENQIRTEQQAALQRLREEAETLQ-KAERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKEAA 1326
Cdd:pfam12128 409 QLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKsRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVE 488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1327 LLQLRE-QLEGERKEAVAGLEKKHSAeLEQLCSSLEAKHQEVISSLQKKIEgAQQKEEAQLQESLGW---AEQRAHQKVH 1402
Cdd:pfam12128 489 RLQSELrQARKRRDQASEALRQASRR-LEERQSALDELELQLFPQAGTLLH-FLRKEAPDWEQSIGKvisPELLHRTDLD 566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1403 QVTEYEQELSSL------LRDKRQEV------EREHERKMDKMKEehwqEMADARERYEAEERKqradlLGHLTGELERL 1470
Cdd:pfam12128 567 PEVWDGSVGGELnlygvkLDLKRIDVpewaasEEELRERLDKAEE----ALQSAREKQAAAEEQ-----LVQANGELEKA 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1471 RRAHERELES--------------MRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQ 1536
Cdd:pfam12128 638 SREETFARTAlknarldlrrlfdeKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQ 717
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1537 LL-----------LDAQRQAALEREEATATHQ-------HLEEAKK--EHTHLLETKQQLR---RTIDDLRVRRVELESQ 1593
Cdd:pfam12128 718 AYwqvvegaldaqLALLKAAIAARRSGAKAELkaletwyKRDLASLgvDPDVIAKLKREIRtleRKIERIAVRRQEVLRY 797
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568959095 1594 VDLLQA----QSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNasphpepgLHIEDLRKSLDTNKNQEV 1656
Cdd:pfam12128 798 FDWYQEtwlqRRPRLATQLSNIERAISELQQQLARLIADTK--------LRRAKLEMERKASEKQQV 856
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1420-1628 |
5.70e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.63 E-value: 5.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1420 QEVEREHERKMDKMKeehwQEMADARERYEAEERKQRAdllghLTGELERLRRAhERELESMRQEQDQQLEDLRRRHRDH 1499
Cdd:COG4942 19 ADAAAEAEAELEQLQ----QEIAELEKELAALKKEEKA-----LLKQLAALERR-IAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1500 ERKLQDLEVELSSRTKDVKARLAQLnvQEENIRKEKQLLL------DAQRQAALEREEATATHQHLEEAKKEHTHLLETK 1573
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRAL--YRLGRQPPLALLLspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568959095 1574 QQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAE 1628
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1327-1793 |
8.47e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.89 E-value: 8.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1327 LLQLREQLEgERKEAVAGLEKKHSAeLEQLCSSLEAKHQEvISSLQKKIEGAQQKEEaQLQESLGWAEQRAHQKVHQVTE 1406
Cdd:TIGR04523 175 LNLLEKEKL-NIQKNIDKIKNKLLK-LELLLSNLKKKIQK-NKSLESQISELKKQNN-QLKDNIEKKQQEINEKTTEISN 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1407 YEQELSSLLrDKRQEVEREHERKMdkmkeehwqemadareryeaEERKQRADLLGHLTGELERLrrahERELESMRQEQD 1486
Cdd:TIGR04523 251 TQTQLNQLK-DEQNKIKKQLSEKQ--------------------KELEQNNKKIKELEKQLNQL----KSEISDLNNQKE 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1487 QQL-EDLRRRHRDHERKLQDLEVELSSRTKdvkaRLAQLNVQEENIRKEKQlllDAQRQAALEREEATATHQHLEEAKKE 1565
Cdd:TIGR04523 306 QDWnKELKSELKNQEKKLEEIQNQISQNNK----IISQLNEQISQLKKELT---NSESENSEKQRELEEKQNEIEKLKKE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1566 HTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRkqdvLKEMAAEMNASphpepglhIEDLR 1645
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER----LKETIIKNNSE--------IKDLT 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1646 KSlDTNKNQEVssslslskEEIDLSMESVRQFLSAegvavrnakeflvrQTRSMRRRQTALKAAQQhwrhELASAQevde 1725
Cdd:TIGR04523 447 NQ-DSVKELII--------KNLDNTRESLETQLKV--------------LSRSINKIKQNLEQKQK----ELKSKE---- 495
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568959095 1726 dlpgtevlgNMRKNLNEETRHLDEMKSAMRKGHDLLKKKEEKL------IQLE-SSLQEEV-SDEDTLKGSSIKKV 1793
Cdd:TIGR04523 496 ---------KELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLesekkeKESKiSDLEDELnKDDFELKKENLEKE 562
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1415-1618 |
1.06e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.86 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1415 LRDKRQEVEREHERKMDKMKEEHWQEMADARERYEAEER-KQRADLLGHLTGELERLRR---AHERELESMRQEQDQQLE 1490
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiAALARRIRALEQELAALEAelaELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1491 DLRRRHRDHER--KLQDLEVELSS--------RTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATHQHLE 1560
Cdd:COG4942 105 ELAELLRALYRlgRQPPLALLLSPedfldavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568959095 1561 EAKKEhthLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRK 1618
Cdd:COG4942 185 EERAA---LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1291-1634 |
1.12e-09 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 63.61 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1291 QKSRRALEQLREQLEAEERSAQAALRAEKEAEKEAAL---LQLREQLEGERKEA------VAGLEKKHSAELEQLCS--- 1358
Cdd:pfam05557 17 EKKQMELEHKRARIELEKKASALKRQLDRESDRNQELqkrIRLLEKREAEAEEAlreqaeLNRLKKKYLEALNKKLNeke 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1359 SLEAKHQEVISSLQKKIEGAQ---QKEEAQLQESLGWAE--QRAHQKVHQ-VTEYEQELSSLlrDKRQEVEREHERKMDK 1432
Cdd:pfam05557 97 SQLADAREVISCLKNELSELRrqiQRAELELQSTNSELEelQERLDLLKAkASEAEQLRQNL--EKQQSSLAEAEQRIKE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1433 MKEEHWQEMADARERYEAEERKQRadlLGHLTGELERLRR--AHERELESMRQEQDQQLEDLRR---RHRDHERKLQDLE 1507
Cdd:pfam05557 175 LEFEIQSQEQDSEIVKNSKSELAR---IPELEKELERLREhnKHLNENIENKLLLKEEVEDLKRkleREEKYREEAATLE 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1508 VELSSRTKDVKA--RLAQ-----LNVQEENIRKEKQLLldaQRQAALEREEATATHQ--HLEEAKKEhthLLETKQQLRR 1578
Cdd:pfam05557 252 LEKEKLEQELQSwvKLAQdtglnLRSPEDLSRRIEQLQ---QREIVLKEENSSLTSSarQLEKARRE---LEQELAQYLK 325
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 568959095 1579 TIDDLRVRRVELESQVDllqaqsqRLQKHLSSLEAEVQRKQDVLKEMAAEMNASPH 1634
Cdd:pfam05557 326 KIEDLNKKLKRHKALVR-------RLQRRVLLLTKERDGYRAILESYDKELTMSNY 374
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1211-1629 |
1.21e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 63.52 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1211 EKSLSLLKAQLQKATAEEKEKEEETKIREEESRRLVCLRAQVQSRTEAFENQIRtEQQAALQRLREEAETLQKA------ 1284
Cdd:PRK02224 327 RDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVE-DRREEIEELEEEIEELRERfgdapv 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1285 ERASLEQKS---RRALEQLREQ---LEAEERSAQAALRAEKEAEKEAALLQLREQLEG--------ERKEAVAGLEkkhs 1350
Cdd:PRK02224 406 DLGNAEDFLeelREERDELREReaeLEATLRTARERVEEAEALLEAGKCPECGQPVEGsphvetieEDRERVEELE---- 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1351 AELEQLcssleakhQEVISSLQKKIEGAQQKEEAQ-----LQESLGWAEQRAHQKVHQVTEYEQELSSlLRDKRQEVERE 1425
Cdd:PRK02224 482 AELEDL--------EEEVEEVEERLERAEDLVEAEdrierLEERREDLEELIAERRETIEEKRERAEE-LRERAAELEAE 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1426 HERKMDKMKEEHwQEMADARERYEAEERKqradlLGHLTGELERLRRAheRELESMRQEQDQQLEDLRRRHRDherkLQD 1505
Cdd:PRK02224 553 AEEKREAAAEAE-EEAEEAREEVAELNSK-----LAELKERIESLERI--RTLLAAIADAEDEIERLREKREA----LAE 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1506 LEVELSSRTKDVKARLAQL--NVQEENIRKEKQllldaqrqaalEREEATathQHLEEAKKEHTHLLETKQQLRRTI--- 1580
Cdd:PRK02224 621 LNDERRERLAEKRERKRELeaEFDEARIEEARE-----------DKERAE---EYLEQVEEKLDELREERDDLQAEIgav 686
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1581 -------DDLRVRRVELESQVDLLQA---QSQRLQKHLSSLEAEV-QRKQDVLKEMAAEM 1629
Cdd:PRK02224 687 eneleelEELRERREALENRVEALEAlydEAEELESMYGDLRAELrQRNVETLERMLNET 746
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1078-1584 |
1.21e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.01 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1078 ERAEEKHSQAEElgleQPEAEETEEKVAvcPSSPVSPEVQTAEPAAPQKlfseAILKGMELEEDQRLLLEFQKEKPQQLE 1157
Cdd:PTZ00121 1315 KKADEAKKKAEE----AKKKADAAKKKA--EEAKKAAEAAKAEAEAAAD----EAEAAEEKAEAAEKKKEEAKKKADAAK 1384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1158 ERLWREEEEKEEGEEEEKEDEEEEGEEEEEEEEKEEEEEEEEEEEVCQLYQQKEKSLSLLKAQLQKATAEEKEKEEETKI 1237
Cdd:PTZ00121 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1238 REEESRRLVCLRAQVQSRTEAFENQIRTEQ-QAALQRLREEAETLQKAERASLEQKSRRAlEQLReqlEAEERSAQAALR 1316
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEaKKKADEAKKAAEAKKKADEAKKAEEAKKA-DEAK---KAEEAKKADEAK 1540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1317 AEKeaekeaallQLREQLEGERKEAVAGLEKKHSAELEQlcssleaKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQR 1396
Cdd:PTZ00121 1541 KAE---------EKKKADELKKAEELKKAEEKKKAEEAK-------KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1397 AHQKVHQVTEYEQElssllRDKRQEVEREHE--RKMDKMKEEHWQEMADARE-RYEAEERKQRADLLGHLTGE----LER 1469
Cdd:PTZ00121 1605 KKMKAEEAKKAEEA-----KIKAEELKKAEEekKKVEQLKKKEAEEKKKAEElKKAEEENKIKAAEEAKKAEEdkkkAEE 1679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1470 LRRAHERELESMRQ-----EQDQQLEDLRRRHRDHERKLQDL----EV------ELSSRTKDVKARLAQLNVQEENIRKE 1534
Cdd:PTZ00121 1680 AKKAEEDEKKAAEAlkkeaEEAKKAEELKKKEAEEKKKAEELkkaeEEnkikaeEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 568959095 1535 KQLLLDAQRQAALEREEATATHQhlEEAKKEHThllETKQQLRRTIDDLR 1584
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRKEKEAVIE--EELDEEDE---KRRMEVDKKIKDIF 1804
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1356-1774 |
1.27e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 63.25 E-value: 1.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1356 LCSSLEAKHQEvISSLQKKIEGAQQKEEAQLQESLGWAEQRaHQKVHQVTEYEQELSSLLRDKRQEVE--REHERKMDKM 1433
Cdd:COG4717 47 LLERLEKEADE-LFKPQGRKPELNLKELKELEEELKEAEEK-EEEYAELQEELEELEEELEELEAELEelREELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1434 KE--EHWQEMADAR-------ERYEA-----EERKQRADLLGHLTGELERLRRAHERELESMRQEQDQQLEDLRRRHRDH 1499
Cdd:COG4717 125 LQllPLYQELEALEaelaelpERLEEleerlEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1500 ERKLQDLEVELssrtKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALERE--------EATATHQHLEEAKKEHTHLLE 1571
Cdd:COG4717 205 QQRLAELEEEL----EEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1572 TKQQLRrTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEaevqrkqdvLKEMAAEMNASPHPEPGlHIEDLRKSLDTN 1651
Cdd:COG4717 281 LVLGLL-ALLFLLLAREKASLGKEAEELQALPALEELEEEE---------LEELLAALGLPPDLSPE-ELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1652 KNQEVSSSLSLSKEEIDLSMESVRQFLSAEGVAvrNAKEFLVRQTRSmrRRQTALKAAQQHWRHELASAQEVDEDLPGTE 1731
Cdd:COG4717 350 QELLREAEELEEELQLEELEQEIAALLAEAGVE--DEEELRAALEQA--EEYQELKEELEELEEQLEELLGELEELLEAL 425
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 568959095 1732 VLGNMRKNLNEETRHLDEMKSAMRKGHDLLKKKEEKLIQLESS 1774
Cdd:COG4717 426 DEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1451-1710 |
1.73e-09 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 61.84 E-value: 1.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1451 EERKQRADLLGHLTGELERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEEN 1530
Cdd:COG4372 9 GKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1531 IRKEKQLLLDAQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSS 1610
Cdd:COG4372 89 LQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1611 LEAEVQRKQDVLKEMAAEMNASPHPEPGLHIEDLRKSLDTNKNQEVSSSLSLSKEEIDLSMESVRQFLSAEGVAVRNAKE 1690
Cdd:COG4372 169 LEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDK 248
|
250 260
....*....|....*....|
gi 568959095 1691 FLVRQTRSMRRRQTALKAAQ 1710
Cdd:COG4372 249 EELLEEVILKEIEELELAIL 268
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1251-1538 |
1.88e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 62.83 E-value: 1.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1251 QVQSRTEAFENQ-IRTEQQAALQRL--REEAETLQKAERASLEQKS-------RRALEQLRE--QLEAEERSAQAALRAE 1318
Cdd:pfam17380 288 QQQEKFEKMEQErLRQEKEEKAREVerRRKLEEAEKARQAEMDRQAaiyaeqeRMAMEREREleRIRQEERKRELERIRQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1319 KEAEKEAALLQLREQLEGERKEAVAGLEKKHSAELEQlcSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAH 1398
Cdd:pfam17380 368 EEIAMEISRMRELERLQMERQQKNERVRQELEAARKV--KILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1399 QKVHQVTEYEQELSSLLRDKRQEVEREHERKMDKMKEEHWQEMADARERY----EAEERKQRADllghltgELERLRRAH 1474
Cdd:pfam17380 446 REMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKilekELEERKQAMI-------EEERKRKLL 518
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568959095 1475 ERELEsmrQEQDQQLEDLRRRHRDHERKLQdLEVELSSRTKDVKARLAQLNVQEENIRKEKQLL 1538
Cdd:pfam17380 519 EKEME---ERQKAIYEEERRREAEEERRKQ-QEMEERRRIQEQMRKATEERSRLEAMEREREMM 578
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1243-1525 |
2.41e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 62.63 E-value: 2.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1243 RRLVCLRAQVQSRTEAFE--NQIRTEQQAALQRLREEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAAlraeke 1320
Cdd:COG4913 610 AKLAALEAELAELEEELAeaEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDAS------ 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1321 aekEAALLQLREQLEgERKEAVAGLEKKHsAELEQLCSSLEAKH---QEVISSLQKKIEGAQQKEEAQLQESLgwaEQRA 1397
Cdd:COG4913 684 ---SDDLAALEEQLE-ELEAELEELEEEL-DELKGEIGRLEKELeqaEEELDELQDRLEAAEDLARLELRALL---EERF 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1398 HQkvHQVTEYEQELSSLLRDKRQEVEREHERKMDKMKEehwqEMADARERYEAEERKQRADL--LGHLTGELERLR---- 1471
Cdd:COG4913 756 AA--ALGDAVERELRENLEERIDALRARLNRAEEELER----AMRAFNREWPAETADLDADLesLPEYLALLDRLEedgl 829
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 568959095 1472 -RAHERELESMRQEQDQQLEDLRRRHRDHERklqdlevelssrtkDVKARLAQLN 1525
Cdd:COG4913 830 pEYEERFKELLNENSIEFVADLLSKLRRAIR--------------EIKERIDPLN 870
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1255-1543 |
2.70e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 2.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1255 RTEAFENQIRT--EQQAALQRLREEAETLQKAERASLEQksrraLEQLREQLEAEERSAQAALRAEKEAEKEaalLQLRE 1332
Cdd:TIGR02168 233 RLEELREELEElqEELKEAEEELEELTAELQELEEKLEE-----LRLEVSELEEEIEELQKELYALANEISR---LEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1333 QLEGERKEAVAGLEKKHSAELEQLCSSLE------AKHQEVISSLQKKIEGAQQKEEAqLQESLGWAEQRAHQKVHQVTE 1406
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDelaeelAELEEKLEELKEELESLEAELEE-LEAELEELESRLEELEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1407 YEQELSSLLRdkRQEVEREHERKMDKMKEEhwqeMADARERYEAEERKQRADLLGHLTGELERLRRAHERELESMRQEQD 1486
Cdd:TIGR02168 384 LRSKVAQLEL--QIASLNNEIERLEARLER----LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568959095 1487 ---QQLEDLRRRHRDHERKLQDLEVELSSrtkdVKARLAQLNVQEENIRKE----KQLLLDAQR 1543
Cdd:TIGR02168 458 rleEALEELREELEEAEQALDAAERELAQ----LQARLDSLERLQENLEGFsegvKALLKNQSG 517
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1427-1568 |
3.89e-09 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 61.33 E-value: 3.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1427 ERKMDKMKEEHWQEMADAREryEAEERKQRADLlgHLTGELERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDL 1506
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKK--EAEAIKKEALL--EAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568959095 1507 ---EVELSSRTKDVKARLAQLNVQEENI-RKEKQLLLDAQRQAALEREEATAthQHLEEAKKEHTH 1568
Cdd:PRK12704 106 ekrEEELEKKEKELEQKQQELEKKEEELeELIEEQLQELERISGLTAEEAKE--ILLEKVEEEARH 169
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1455-1631 |
5.11e-09 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 58.78 E-value: 5.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1455 QRADLLGHLTGELERLRRAHERELESMRQEqdqqLEDLRRRHRDHERKLQDLEVELssrtKDVKARLAQLNVQEENIRKE 1534
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEAR----LEAAKTELEDLEKEIKRLELEI----EEVEARIKKYEEQLGNVRNN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1535 KQLlldaqrqAALEREEATATHQhLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAqsqRLQKHLSSLEAE 1614
Cdd:COG1579 89 KEY-------EALQKEIESLKRR-ISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKA---ELDEELAELEAE 157
|
170
....*....|....*..
gi 568959095 1615 VQRKQDVLKEMAAEMNA 1631
Cdd:COG1579 158 LEELEAEREELAAKIPP 174
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1242-1613 |
9.62e-09 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 60.74 E-value: 9.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1242 SRRLVCLRAQVQSRTEAFENQ-IRTEQQAALQRLREEAETLQKAERAsLEQKSRRALEQLREqleaeersAQAALRAEKE 1320
Cdd:COG3096 278 NERRELSERALELRRELFGARrQLAEEQYRLVEMARELEELSARESD-LEQDYQAASDHLNL--------VQTALRQQEK 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1321 -AEKEAALLQLREQLEgERKEAVAGL--------EKKHSAELE--QLCSSLeAKHQEVISSLQKKIEGAQQ----KEEAQ 1385
Cdd:COG3096 349 iERYQEDLEELTERLE-EQEEVVEEAaeqlaeaeARLEAAEEEvdSLKSQL-ADYQQALDVQQTRAIQYQQavqaLEKAR 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1386 LQ---ESLGWAEQRAHQKVHQvtEYEQELSSLLRDKRQEVE------REHERKMdkmkeEHWQEMADARERYEAEERKQ- 1455
Cdd:COG3096 427 ALcglPDLTPENAEDYLAAFR--AKEQQATEEVLELEQKLSvadaarRQFEKAY-----ELVCKIAGEVERSQAWQTARe 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1456 ---RADLLGHLTGELERLRRAH---ERELESmRQEQDQQLEDLRRRH---RDHERKLQDLEVELSSRTKDVKARLAqlNV 1526
Cdd:COG3096 500 llrRYRSQQALAQRLQQLRAQLaelEQRLRQ-QQNAERLLEEFCQRIgqqLDAAEELEELLAELEAQLEELEEQAA--EA 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1527 QEENIRKEKQLLLDAQRQAALEREE-----ATATHQHLEEAKKEHthlLETKQQLRRTIDDLRVRRVELESQVDLLQAQS 1601
Cdd:COG3096 577 VEQRSELRQQLEQLRARIKELAARApawlaAQDALERLREQSGEA---LADSQEVTAAMQQLLEREREATVERDELAARK 653
|
410
....*....|..
gi 568959095 1602 QRLQKHLSSLEA 1613
Cdd:COG3096 654 QALESQIERLSQ 665
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1279-1583 |
1.01e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 60.62 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1279 ETLQKAERASLEQKSRRALEQLREQLEAEERSAQAAlraekeaekEAALLQLREQLEGERKEAVAGLEKKHSAELEQlcS 1358
Cdd:pfam12128 588 KRIDVPEWAASEEELRERLDKAEEALQSAREKQAAA---------EEQLVQANGELEKASREETFARTALKNARLDL--R 656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1359 SLEAKHQEVISSLQKKIEGAQQKEEAQLQESLgwAEQRAHQKVHQVTEYEQ-----ELSSLLRDKRQEVEREHERKMDKM 1433
Cdd:pfam12128 657 RLFDEKQSEKDKKNKALAERKDSANERLNSLE--AQLKQLDKKHQAWLEEQkeqkrEARTEKQAYWQVVEGALDAQLALL 734
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1434 KEE--HWQEMADARERYEAEERKQRADLLG--------------HLTGELERL--RRAHERELESMRQEQ-DQQLEDLRR 1494
Cdd:pfam12128 735 KAAiaARRSGAKAELKALETWYKRDLASLGvdpdviaklkreirTLERKIERIavRRQEVLRYFDWYQETwLQRRPRLAT 814
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1495 RHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQR--QAALEREEATATHQHLEEAKKEHTHLLET 1572
Cdd:pfam12128 815 QLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRglRCEMSKLATLKEDANSEQAQGSIGERLAQ 894
|
330
....*....|.
gi 568959095 1573 KQQLRRTIDDL 1583
Cdd:pfam12128 895 LEDLKLKRDYL 905
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1249-1417 |
2.07e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 59.65 E-value: 2.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1249 RAQVQSRTEAFENQIRT------EQQAALQRLREEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAALR------ 1316
Cdd:COG3206 170 REEARKALEFLEEQLPElrkeleEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAalraql 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1317 -----AEKEAEKEAALLQLREQ---LEGERKEAVAGLEKKHS------AELEQLCSSLEAKHQEVISSLQKKIEGAQQkE 1382
Cdd:COG3206 250 gsgpdALPELLQSPVIQQLRAQlaeLEAELAELSARYTPNHPdvialrAQIAALRAQLQQEAQRILASLEAELEALQA-R 328
|
170 180 190
....*....|....*....|....*....|....*
gi 568959095 1383 EAQLQESLgwaeQRAHQKVHQVTEYEQELSSLLRD 1417
Cdd:COG3206 329 EASLQAQL----AQLEARLAELPELEAELRRLERE 359
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1254-1772 |
3.93e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 3.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1254 SRTEAFENQIRTEQQAALQRLREEAETLQKAERASLEQKSRRALEqlREQLEAEERSAQAALRAEKEAekeaalLQLREQ 1333
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTE--RDQFSQESGNLDDQLQKLLAD------LHKREK 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1334 ---LEGERKEAVAGLEKKHSAELEQLCSSLEAKHQEViSSLQKKIEGAQQKEEAQLQESLGwAEQRAHQKVHQVTEYEQE 1410
Cdd:pfam15921 392 elsLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEV-QRLEALLKAMKSECQGQMERQMA-AIQGKNESLEKVSSLTAQ 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1411 LSSLLRDKRQEVEREHERKMDKMKEEH--------WQEMADARERYEAE--ERKQRADL----LGHLTGELERLRRAhER 1476
Cdd:pfam15921 470 LESTKEMLRKVVEELTAKKMTLESSERtvsdltasLQEKERAIEATNAEitKLRSRVDLklqeLQHLKNEGDHLRNV-QT 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1477 ELESMR---QEQD-------QQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARlaQLNVQEENIRKEKQlllDAQ---- 1542
Cdd:pfam15921 549 ECEALKlqmAEKDkvieilrQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR--RLELQEFKILKDKK---DAKirel 623
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1543 --RQAALEREEATATH------QHLEEAKKEHTHLLE----TKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSS 1610
Cdd:pfam15921 624 eaRVSDLELEKVKLVNagserlRAVKDIKQERDQLLNevktSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKS 703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1611 LEAEVQRKQDVLKEMAAEMNASPHPEPGlhiedLRKSLDTNKNQevssslslskeeIDlSMESVRQFLSAEGVAVRNAKE 1690
Cdd:pfam15921 704 AQSELEQTRNTLKSMEGSDGHAMKVAMG-----MQKQITAKRGQ------------ID-ALQSKIQFLEEAMTNANKEKH 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1691 FLVRQTRSMRRRQTALKAAQQHWRHELasaqevdedlpgtEVLGNMRKNLNEETRH----LDEMKSAMRKGHDLLKKKEE 1766
Cdd:pfam15921 766 FLKEEKNKLSQELSTVATEKNKMAGEL-------------EVLRSQERRLKEKVANmevaLDKASLQFAECQDIIQRQEQ 832
|
....*.
gi 568959095 1767 KLIQLE 1772
Cdd:pfam15921 833 ESVRLK 838
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1197-1778 |
4.44e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.83 E-value: 4.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1197 EEEEEEVCQLYQQKEKslsllkaqlqkataeekekeeetkireeesrrlvclraqvqsrtEAFENQIRTEQQaaLQRLRE 1276
Cdd:pfam02463 157 EIEEEAAGSRLKRKKK--------------------------------------------EALKKLIEETEN--LAELII 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1277 EAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKEAALLQLREQLEGERKEAVAGLEKKHSAELEQl 1356
Cdd:pfam02463 191 DLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQ- 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1357 cSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAH----QKVHQVTEYEQELSSLLRDKRQEVEREHERK-MD 1431
Cdd:pfam02463 270 -VLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVddeeKLKESEKEKKKAEKELKKEKEEIEELEKELKeLE 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1432 KMKEEHWQEMADARERYEAEERKQRADLLGHLTGELERLRRAHERELESMRQEQDQQ----LEDLRRRHRDHERKLQD-- 1505
Cdd:pfam02463 349 IKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKeaqlLLELARQLEDLLKEEKKee 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1506 ----LEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATHQHLEEA----KKEHTHLLETKQQ-- 1575
Cdd:pfam02463 429 leilEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLlsrqKLEERSQKESKARsg 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1576 ---LRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNASPHPEPGLHIEDLRKSLDTNK 1652
Cdd:pfam02463 509 lkvLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLK 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1653 NQEVSSSLSLSKEEIDLSMESVRQFLSAEGVAVRNAKEFLVRQTRSMRRRQTALKAAQ--QHWRHELASAQEVDEDLPGT 1730
Cdd:pfam02463 589 LPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESglRKGVSLEEGLAEKSEVKASL 668
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 568959095 1731 EVLGNMRKN--LNEETRHLDEMKSAMRKGHDLLKKKEEKLIQLESSLQEE 1778
Cdd:pfam02463 669 SELTKELLEiqELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1366-1645 |
5.48e-08 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 58.05 E-value: 5.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1366 EVISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELSsllrdkrqEVEREHERKMDKMKEEHWQEMADAR 1445
Cdd:COG5185 282 ENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEQELE--------ESKRETETGIQNLTAEIEQGQESLT 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1446 ERYEAEeRKQRADLLGhltgeLERLRRAhERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLN 1525
Cdd:COG5185 354 ENLEAI-KEEIENIVG-----EVELSKS-SEELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQ 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1526 VQ--------EENIRKEKQLLLDAQRQaalEREEATATHQHLEEAKKEHthlletKQQLRRTIDDLRVRRVELESQVDLL 1597
Cdd:COG5185 427 RQieqatssnEEVSKLLNELISELNKV---MREADEESQSRLEEAYDEI------NRSVRSKKEDLNEELTQIESRVSTL 497
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 568959095 1598 QAQsqrLQKHLSSLEAEVQRKQDVLKEMAAEMNASPHPEPGLHIEDLR 1645
Cdd:COG5185 498 KAT---LEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYAHILALE 542
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1208-1611 |
6.47e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 58.31 E-value: 6.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1208 QQKEKSLSLLKAQLQKATAEEKEKEEETKIREEESRRLVclrAQVQSRTEAFENQIRTEQQAALQRLREEAetlqkAERA 1287
Cdd:pfam12128 621 AAAEEQLVQANGELEKASREETFARTALKNARLDLRRLF---DEKQSEKDKKNKALAERKDSANERLNSLE-----AQLK 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1288 SLEQKSRRALEQLREQLEAEERSAQAALRaekeaekeaALLQLREQLEGERKEAVAGLEKKHSAELEQL----CSSLEAK 1363
Cdd:pfam12128 693 QLDKKHQAWLEEQKEQKREARTEKQAYWQ---------VVEGALDAQLALLKAAIAARRSGAKAELKALetwyKRDLASL 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1364 --HQEVISSLQKKIEGAQQKEEaqlqeslgwaeqRAHQKVHQVTEYE---QELSSLLRDKRQEVEREHERKMDKMKEEHW 1438
Cdd:pfam12128 764 gvDPDVIAKLKREIRTLERKIE------------RIAVRRQEVLRYFdwyQETWLQRRPRLATQLSNIERAISELQQQLA 831
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1439 QEMADARERYEAEER------KQRADLLGHLTG---ELERLRRAHE----RELESMRQEQDQQLEDLRRRHR----DHER 1501
Cdd:pfam12128 832 RLIADTKLRRAKLEMerkaseKQQVRLSENLRGlrcEMSKLATLKEdansEQAQGSIGERLAQLEDLKLKRDylseSVKK 911
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1502 KLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREE-ATATHQHLEEAKKEHTHLL-ETKQQLRRT 1579
Cdd:pfam12128 912 YVEHFKNVIADHSGSGLAETWESLREEDHYQNDKGIRLLDYRKLVPYLEQwFDVRVPQSIMVLREQVSILgVDLTEFYDV 991
|
410 420 430
....*....|....*....|....*....|..
gi 568959095 1580 IDDLRvRRVelesqvdllQAQSQRLQKHLSSL 1611
Cdd:pfam12128 992 LADFD-RRI---------ASFSRELQREVGEE 1013
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1341-1554 |
6.97e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.08 E-value: 6.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1341 AVAGLEKKHSAELEQLcssleakhQEVISSLQKKIEgAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSL------ 1414
Cdd:COG4942 17 AQADAAAEAEAELEQL--------QQEIAELEKELA-ALKKEEKALLKQLAALERRIAALARRIRALEQELAALeaelae 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1415 LRDKRQEVEREHERKMDKMKE--------------------EHWQEMADARERYEA--EERKQRADLLGHLTGELERLRR 1472
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAEllralyrlgrqpplalllspEDFLDAVRRLQYLKYlaPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1473 aherELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEA 1552
Cdd:COG4942 168 ----ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
..
gi 568959095 1553 TA 1554
Cdd:COG4942 244 PA 245
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1262-1697 |
7.10e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.81 E-value: 7.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1262 QIRTEQQAALQRLREEAETLQ------KAERASLEQKSRRALEQLrEQLEAEERSAQAALRAEKEAEKEAALLQLREQLE 1335
Cdd:pfam05483 328 QLTEEKEAQMEELNKAKAAHSfvvtefEATTCSLEELLRTEQQRL-EKNEDQLKIITMELQKKSSELEEMTKFKNNKEVE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1336 GERKEAVAGLEKK---HSAELEQLCSSLEAKHQEVISSLQkkiegAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELS 1412
Cdd:pfam05483 407 LEELKKILAEDEKlldEKKQFEKIAEELKGKEQELIFLLQ-----AREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELE 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1413 sllRDKRQEVE-REHERKMDKMKEEHWQEMADARERYEAEE------RKQRADLLGHLTgELERLRRAHERELESMRQEQ 1485
Cdd:pfam05483 482 ---KEKLKNIElTAHCDKLLLENKELTQEASDMTLELKKHQediincKKQEERMLKQIE-NLEEKEMNLRDELESVREEF 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1486 DQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATHQHLE----E 1561
Cdd:pfam05483 558 IQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNayeiK 637
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1562 AKKEHTHLLETKQQL-------RRTIDDLRVRRVELESQVDLLQA---QSQRLQKHLSsleaevQRKQDVLKEMAAEMNA 1631
Cdd:pfam05483 638 VNKLELELASAKQKFeeiidnyQKEIEDKKISEEKLLEEVEKAKAiadEAVKLQKEID------KRCQHKIAEMVALMEK 711
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568959095 1632 SPHPEPGLhIEDLRKSLDTNKNQEVSSSLSLSKEEIDLS-----MESVRQFLSAEgvavRNAKEFLVRQTR 1697
Cdd:pfam05483 712 HKHQYDKI-IEERDSELGLYKNKEQEQSSAKAALEIELSnikaeLLSLKKQLEIE----KEEKEKLKMEAK 777
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1264-1620 |
7.22e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 57.88 E-value: 7.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1264 RTEQQAALQRLREEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKEAALLQLREQLEGERKEAVA 1343
Cdd:pfam01576 325 REQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSE 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1344 GLEKKHSAELEQLCSSL------EAKHQEVISSLQKKIEGAQ-------------QKE----EAQLQESLGWAEQRAHQK 1400
Cdd:pfam01576 405 HKRKKLEGQLQELQARLseserqRAELAEKLSKLQSELESVSsllneaegkniklSKDvsslESQLQDTQELLQEETRQK 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1401 V---HQVTEYEQELSSLLrdKRQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRAdllghltgeLERLRRAHERE 1477
Cdd:pfam01576 485 LnlsTRLRQLEDERNSLQ--EQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEA---------LEEGKKRLQRE 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1478 LESMRQ---EQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKA------RLAQLNVQEENIRKEKQLLLDAQRQAALE 1548
Cdd:pfam01576 554 LEALTQqleEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNlekkqkKFDQMLAEEKAISARYAEERDRAEAEARE 633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1549 RE-EATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRR-------VELESQVDLLQAQSQRLQKHLSSLEAEVQRKQD 1620
Cdd:pfam01576 634 KEtRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKddvgknvHELERSKRALEQQVEEMKTQLEELEDELQATED 713
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1287-1555 |
8.68e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 8.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1287 ASLEQKSRRALEQLREQLEAEERSAQAALraekeaekeaallqlrEQLEGERKEAVAGLEK--KHSAELEQLCSSLEAKh 1364
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKEL----------------AALKKEEKALLKQLAAleRRIAALARRIRALEQE- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1365 qevISSLQKKIEGAqQKEEAQLQESLgwAEQRAhqkvhqvtEYEQELSSLLRDKRQeverehERKMDKMKEEHWQEMADA 1444
Cdd:COG4942 78 ---LAALEAELAEL-EKEIAELRAEL--EAQKE--------ELAELLRALYRLGRQ------PPLALLLSPEDFLDAVRR 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1445 RERYE--AEERKQRADLLGHLTGELERLRRAHERE---LESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRtkdvKA 1519
Cdd:COG4942 138 LQYLKylAPARREQAEELRADLAELAALRAELEAEraeLEALLAELEEERAALEALKAERQKLLARLEKELAEL----AA 213
|
250 260 270
....*....|....*....|....*....|....*.
gi 568959095 1520 RLAQLNVQEENIRKekqlLLDAQRQAALEREEATAT 1555
Cdd:COG4942 214 ELAELQQEAEELEA----LIARLEAEAAAAAERTPA 245
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
995-1558 |
1.08e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 995 DQEEQDDSKSSIAEPQSKHTQGSER--EHLQSSLHSQATEEGPLQTLEGQPEWKEAEGPGKDSVASPAPLSLLQREQVLS 1072
Cdd:PTZ00121 1313 EAKKADEAKKKAEEAKKKADAAKKKaeEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1073 PPASPERAEEKHSQAEELgleqpeAEETEEKVAVCPSSPVSPEVQTAEPAapqKLFSEAILKGMELEEDQRLLLEFQKEK 1152
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADEL------KKAAAAKKKADEAKKKAEEKKKADEA---KKKAEEAKKADEAKKKAEEAKKAEEAK 1463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1153 PQQLEERLWREEEEKEEGEEEEKEDEEEEGEEEEEEEEKEEEEEEEEEEEVCQLYQQKEKSLSLLKAQLQKATAEEKEKE 1232
Cdd:PTZ00121 1464 KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1233 EETKIREEESRRLVcLRAQVQSRTEafenQIRTEQQAALQRLReEAETLQKAERASLEQKSRRALEQLR---EQL--EAE 1307
Cdd:PTZ00121 1544 EKKKADELKKAEEL-KKAEEKKKAE----EAKKAEEDKNMALR-KAEEAKKAEEARIEEVMKLYEEEKKmkaEEAkkAEE 1617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1308 ERSAQAALRAEKEAEKEAALLQLREQLEGERKEAVAGLEKKHSAELEQLCSSLEAKHQEViSSLQKKIEGAQQKEEAQLQ 1387
Cdd:PTZ00121 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA-EEAKKAEEDEKKAAEALKK 1696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1388 EslgwAEQRahQKVHQVTEYEQElsslLRDKRQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRADLLGHLTGEL 1467
Cdd:PTZ00121 1697 E----AEEA--KKAEELKKKEAE----EKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE 1766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1468 ERLRRAHERELESMRQEQDQQlEDLRRRhrdherklqdleVELSSRTKDVKARLAqlNVQEEN------IRKEKQLLLDA 1541
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEELDE-EDEKRR------------MEVDKKIKDIFDNFA--NIIEGGkegnlvINDSKEMEDSA 1831
|
570 580
....*....|....*....|.
gi 568959095 1542 QRQAA----LEREEATATHQH 1558
Cdd:PTZ00121 1832 IKEVAdsknMQLEEADAFEKH 1852
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1483-1631 |
1.53e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 54.55 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1483 QEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLldAQRQAALEREEatathQHLEEA 1562
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI--EEVEARIKKYE-----EQLGNV 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568959095 1563 K--KEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNA 1631
Cdd:COG1579 86 RnnKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEA 156
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1541-1789 |
1.73e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1541 AQRQAALE--REEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRK 1618
Cdd:COG4942 23 AEAEAELEqlQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1619 QDVLKEMAAE---MNASPHPEPGLHIEDlrkSLDTNKNQEVssslslskeeidlsMESVRQFLSAEGVAVRNAKEFLVRQ 1695
Cdd:COG4942 103 KEELAELLRAlyrLGRQPPLALLLSPED---FLDAVRRLQY--------------LKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1696 TRS---MRRRQTALKAAQQHWRHELASAQEVDEDLpgtevLGNMRKNLNEETRHLDEmksamrkghdlLKKKEEKLIQLE 1772
Cdd:COG4942 166 RAEleaERAELEALLAELEEERAALEALKAERQKL-----LARLEKELAELAAELAE-----------LQQEAEELEALI 229
|
250
....*....|....*..
gi 568959095 1773 SSLQEEVSDEDTLKGSS 1789
Cdd:COG4942 230 ARLEAEAAAAAERTPAA 246
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1358-1632 |
1.90e-07 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 54.92 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1358 SSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAhQKVHQVTEYEQELSSL--LRDKRQEVEREHERKmdkmKE 1435
Cdd:COG1340 7 SSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRD-ELNAQVKELREEAQELreKRDELNEKVKELKEE----RD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1436 EHWQEMADAREryEAEERKQRADLLGHLTGELERLRRAHERElesmrqEQDQQLEDLRRrhrDHERKLQDLEVELSSRTK 1515
Cdd:COG1340 82 ELNEKLNELRE--ELDELRKELAELNKAGGSIDKLRKEIERL------EWRQQTEVLSP---EEEKELVEKIKELEKELE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1516 DVKArlaqlnvqeenIRKEKQLLLDAQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVD 1595
Cdd:COG1340 151 KAKK-----------ALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIV 219
|
250 260 270
....*....|....*....|....*....|....*..
gi 568959095 1596 LLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNAS 1632
Cdd:COG1340 220 EAQEKADELHEEIIELQKELRELRKELKKLRKKQRAL 256
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
1261-1630 |
1.91e-07 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 55.31 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1261 NQIRTEQQAALQRLREEAETLQKAERASLEQKSRRALEQL--REQLEAEERSAQAAlraekeaekeaallQLREQLEgER 1338
Cdd:pfam13868 21 NKERDAQIAEKKRIKAEEKEEERRLDEMMEEERERALEEEeeKEEERKEERKRYRQ--------------ELEEQIE-ER 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1339 KEavagleKKHSAELEQLcssLEAKHqevissLQKKIEGAQQKEEAQLQEslgwAEQRAHQKVHQVTEYEQElssllRDK 1418
Cdd:pfam13868 86 EQ------KRQEEYEEKL---QEREQ------MDEIVERIQEEDQAEAEE----KLEKQRQLREEIDEFNEE-----QAE 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1419 RQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRAdllghltgelerlrrahERELESMRQEQDQQLEDLRRRHRD 1498
Cdd:pfam13868 142 WKELEKEEEREEDERILEYLKEKAEREEEREAEREEIEE-----------------EKEREIARLRAQQEKAQDEKAERD 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1499 herklqdlevelssrtkdvkaRLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATHQHLEEAKKehtHLLETKQQLRR 1578
Cdd:pfam13868 205 ---------------------ELRAKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIELKE---RRLAEEAEREE 260
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 568959095 1579 TIDDLRVRRVELESQVDLLQAQSQRL--QKHLSSLEAEVQ-RKQDVLKEMAAEMN 1630
Cdd:pfam13868 261 EEFERMLRKQAEDEEIEQEEAEKRRMkrLEHRRELEKQIEeREEQRAAEREEELE 315
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1337-1769 |
2.78e-07 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 55.98 E-value: 2.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1337 ERKEAVAGLE--KKHS----AELEQLCSSLEAKHQEVISsLQKKIE--GAQQKEEAQ----LQESLGWAEQRA---HQKV 1401
Cdd:pfam10174 269 DREEEIKQMEvyKSHSkfmkNKIDQLKQELSKKESELLA-LQTKLEtlTNQNSDCKQhievLKESLTAKEQRAailQTEV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1402 HQVTEYEQELSSLLRDKRQEVEREHERKMDKMKE-EHWQEMADARERYEAEERKQRADLLGHLT---GELERLRRAHER- 1476
Cdd:pfam10174 348 DALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEiRDLKDMLDVKERKINVLQKKIENLQEQLRdkdKQLAGLKERVKSl 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1477 ------------ELESMRQEQDQQLEDLRRRHRDHERKLQDlevELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQ 1544
Cdd:pfam10174 428 qtdssntdtaltTLEEALSEKERIIERLKEQREREDRERLE---ELESLKKENKDLKEKVSALQPELTEKESSLIDLKEH 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1545 AALEREEATATHQHLE------EAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRK 1618
Cdd:pfam10174 505 ASSLASSGLKKDSKLKsleiavEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERL 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1619 QDVLKEMAAEMNASPHPEPGLHIEDLRKSLDTNKnqevssslslskeeidlsmeSVRQFLSAEGVAVRNAKEFLVRQtrs 1698
Cdd:pfam10174 585 LGILREVENEKNDKDKKIAELESLTLRQMKEQNK--------------------KVANIKHGQQEMKKKGAQLLEEA--- 641
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568959095 1699 mRRRQTALKAAQQHWRHE--LASAQEVDEDLPGTEV-LGNMRKNLNEETRHLDEMKSAMRKG-HDLLKKKEEKLI 1769
Cdd:pfam10174 642 -RRREDNLADNSQQLQLEelMGALEKTRQELDATKArLSSTQQSLAEKDGHLTNLRAERRKQlEEILEMKQEALL 715
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1291-1557 |
4.97e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 4.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1291 QKSRRALEQLREQLEAEERSAQAAlraekeAEKEAALLQLREQLEgERKEAVAGLEKKHSAELEQlcssleAKHQEVISS 1370
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEA------EERLEALEAELDALQ-ERREALQRLAEYSWDEIDV------ASAEREIAE 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1371 LQKKIEGAQQ--KEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSlLRDKRQEVEREHERKMDkmKEEHWQEMADARERY 1448
Cdd:COG4913 673 LEAELERLDAssDDLAALEEQLEELEAELEELEEELDELKGEIGR-LEKELEQAEEELDELQD--RLEAAEDLARLELRA 749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1449 EAEERKQRADLLGHltgeLERLRRAHERELESMRQEQDQQLEDLRRRHRDHERK----LQDLEVELSSRTkDVKARLAQL 1524
Cdd:COG4913 750 LLEERFAAALGDAV----ERELRENLEERIDALRARLNRAEEELERAMRAFNREwpaeTADLDADLESLP-EYLALLDRL 824
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568959095 1525 nVQEENIRKE---KQLLLDAQRQ------AALEREEATATHQ 1557
Cdd:COG4913 825 -EEDGLPEYEerfKELLNENSIEfvadllSKLRRAIREIKER 865
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1475-1786 |
4.99e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 4.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1475 ERELESMRQEQDQQLEDLRRRhrdherkLQDLEVELSS----------RTKDVKARLAQLNVQEENIRKEKQLLLDAQRQ 1544
Cdd:TIGR02169 662 PRGGILFSRSEPAELQRLRER-------LEGLKRELSSlqselrrienRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1545 AALE----REEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESqvDLLQAQSQRLQKHLSSLEAEVQRKQD 1620
Cdd:TIGR02169 735 LKERleelEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIEA 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1621 VLKEMAAEMNASpHPEPGL------HIEDLRKSLDTNKN--QEVSSSLSLSKEEIDLSMESVRQF---LSAEGVAVRNAK 1689
Cdd:TIGR02169 813 RLREIEQKLNRL-TLEKEYlekeiqELQEQRIDLKEQIKsiEKEIENLNGKKEELEEELEELEAAlrdLESRLGDLKKER 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1690 EFLVRQTRSMRRRQTALKAAQQHWRH---------------------ELASAQEVDEDLPGTEVLGNMRKNLNEETRHL- 1747
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKrlselkaklealeeelseiedPKGEDEEIPEEELSLEDVQAELQRVEEEIRALe 971
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 568959095 1748 -------DEMKSAMRKgHDLLKKKEEKLIQLESSLQEEVSDEDTLK 1786
Cdd:TIGR02169 972 pvnmlaiQEYEEVLKR-LDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1205-1620 |
5.87e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.97 E-value: 5.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1205 QLYQQKEKSLSLLKA-----------------QLQKATAEEKEKEEETKIREEESRRLVCLRAQVQSRTEAFENQIRtEQ 1267
Cdd:TIGR00618 383 TLQQQKTTLTQKLQSlckeldilqreqatidtRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKI-HL 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1268 QAALQRLREEAETLQKAERASLEQKSRRALEQLREQLEAEE--------RSAQAALRAEKEAEKEAALLQLREQLEGERK 1339
Cdd:TIGR00618 462 QESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEpcplcgscIHPNPARQDIDNPGPLTRRMQRGEQTYAQLE 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1340 EAVAGLEKKHSAELEQLcSSLEAKHQEVISSLQKKiegAQQKEEaqLQESLgwaeqrahQKVHQVTEYEQ-ELSSLLRDK 1418
Cdd:TIGR00618 542 TSEEDVYHQLTSERKQR-ASLKEQMQEIQQSFSIL---TQCDNR--SKEDI--------PNLQNITVRLQdLTEKLSEAE 607
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1419 RQEVEREHERKMDKMKEEHWQEMAdareRYEAEERKQRADLLGHLTGELERLrrAHERELESMRQEQDQQLEDLRRRHRD 1498
Cdd:TIGR00618 608 DMLACEQHALLRKLQPEQDLQDVR----LHLQQCSQELALKLTALHALQLTL--TQERVREHALSIRVLPKELLASRQLA 681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1499 hERKLQDLEVELSSRTKDVKARLAQLNVQEENIRK-----EKQLLLDAQRQAALEREEATATH-----QHLEEAKKEHTH 1568
Cdd:TIGR00618 682 -LQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEydrefNEIENASSSLGSDLAAREDALNQslkelMHQARTVLKART 760
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 568959095 1569 LLETKQQLRRTIDDLRVRRV-ELESQVDLLQAQSQRLQKHLSSLEAEVQRKQD 1620
Cdd:TIGR00618 761 EAHFNNNEEVTAALQTGAELsHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIP 813
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1439-1627 |
6.15e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 54.64 E-value: 6.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1439 QEMADARERYEAEERKQRAD-LLGHLTGELERLR---RAHERELESMRQEQDqqLEDLRRRHRDHERKLQDLEVELS--- 1511
Cdd:COG3206 155 NALAEAYLEQNLELRREEARkALEFLEEQLPELRkelEEAEAALEEFRQKNG--LVDLSEEAKLLLQQLSELESQLAear 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1512 SRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATHQHLEEAKK---EHTHLLETKQQLRRTIDDLRVR-- 1586
Cdd:COG3206 233 AELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARytpNHPDVIALRAQIAALRAQLQQEaq 312
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568959095 1587 --RVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAA 1627
Cdd:COG3206 313 riLASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRR 355
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
1261-1698 |
7.82e-07 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 54.14 E-value: 7.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1261 NQIRTEQQAALQRLRE--EAETLQKAERASLEQKSRRALEQLREQLEA-EERSAQAALRAEKEAEKEAALLQLREQLEGE 1337
Cdd:COG5278 82 EEARAEIDELLAELRSltADNPEQQARLDELEALIDQWLAELEQVIALrRAGGLEAALALVRSGEGKALMDEIRARLLLL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1338 RKEAVAGLEKKHSAELEQLCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSLLRD 1417
Cdd:COG5278 162 ALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELLAALALA 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1418 KRQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRADLLGHLTGELERLRRAHERELESMRQEQDQQLEDLRRRHR 1497
Cdd:COG5278 242 LALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAAAAAAAA 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1498 DHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLR 1577
Cdd:COG5278 322 AAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAIAAAAAA 401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1578 RTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNASPHPEPGLHIEDLRKSLDTNKNQEVS 1657
Cdd:COG5278 402 AAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAALAALAAAA 481
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 568959095 1658 SSLSLSKEEIDLSMESVRQFLSAEGVAVRNAKEFLVRQTRS 1698
Cdd:COG5278 482 AALAEAEAAAALAAAAALSLALALAALLLAAAEAALAAALA 522
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1137-1628 |
8.49e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 8.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1137 ELEEDQRLLlefqKEKPQQLEERLwreeeekeegeeEEKEDEEEEGEEEEEEEEKEEEEEEEEEEEVCQLYQQKEKSLSL 1216
Cdd:pfam15921 332 ELREAKRMY----EDKIEELEKQL------------VLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSL 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1217 LKAQLQKATAEEKEKEEETKIReeesRRLVCLRAQVQSRTEAFENQIRTEQQAALQR----LREEAETLQK-----AERA 1287
Cdd:pfam15921 396 EKEQNKRLWDRDTGNSITIDHL----RRELDDRNMEVQRLEALLKAMKSECQGQMERqmaaIQGKNESLEKvssltAQLE 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1288 SLEQKSRRALEQL---REQLEAEER-------SAQAALRAEKEAEKEAALLQLREQLEGERKEAVAGlEKKHSAELEQLC 1357
Cdd:pfam15921 472 STKEMLRKVVEELtakKMTLESSERtvsdltaSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKN-EGDHLRNVQTEC 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1358 SSLE---AKHQEVISSLQKKIE-------------GAQQKEEAQLqeslgwaEQRAHQKVHQVTEYEqelssLLRDKRQE 1421
Cdd:pfam15921 551 EALKlqmAEKDKVIEILRQQIEnmtqlvgqhgrtaGAMQVEKAQL-------EKEINDRRLELQEFK-----ILKDKKDA 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1422 VEREHERKMDKMKEEHWQEMADARERYEA-EERKQRADllgHLTGELERLRraheRELESMRQEQDQQLEDLRRRHRDHE 1500
Cdd:pfam15921 619 KIRELEARVSDLELEKVKLVNAGSERLRAvKDIKQERD---QLLNEVKTSR----NELNSLSEDYEVLKRNFRNKSEEME 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1501 RKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATH---QHLEE----AKKEHTHLLETK 1573
Cdd:pfam15921 692 TTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQskiQFLEEamtnANKEKHFLKEEK 771
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568959095 1574 QQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRK-------QDVLKEMAAE 1628
Cdd:pfam15921 772 NKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKAslqfaecQDIIQRQEQE 833
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
1285-1593 |
9.41e-07 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 53.72 E-value: 9.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1285 ERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKEaallqlreqlegERKEAVAGLEKKHSAELEQLCSSLEAKH 1364
Cdd:pfam02029 4 EEEAARERRRRAREERRRQKEEEEPSGQVTESVEPNEHNS------------YEEDSELKPSGQGGLDEEEAFLDRTAKR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1365 QE-VISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSLLRDKRQEVErEHERKMDKMKEEHW-QEMA 1442
Cdd:pfam02029 72 EErRQKRLQEALERQKEFDPTIADEKESVAERKENNEEEENSSWEKEEKRDSRLGRYKEE-ETEIREKEYQENKWsTEVR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1443 DARERYEAEERKQRADllghlTGELERLRRAHERELESMRQEQDQQLED---LRRRHRDHERKLQDLEVELSSRTKDVKA 1519
Cdd:pfam02029 151 QAEEEGEEEEDKSEEA-----EEVPTENFAKEEVKDEKIKKEKKVKYESkvfLDQKRGHPEVKSQNGEEEVTKLKVTTKR 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1520 RLAQLNV-----QEENIRKEKQLLLDAQRQ--AALEREEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELES 1592
Cdd:pfam02029 226 RQGGLSQsqereEEAEVFLEAEQKLEELRRrrQEKESEEFEKLRQKQQEAELELEELKKKREERRKLLEEEEQRRKQEEA 305
|
.
gi 568959095 1593 Q 1593
Cdd:pfam02029 306 E 306
|
|
| PspA_IM30 |
pfam04012 |
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent ... |
1468-1632 |
1.03e-06 |
|
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.
Pssm-ID: 461130 [Multi-domain] Cd Length: 215 Bit Score: 51.60 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1468 ERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKdvKARLAqLNVQEENIRKEKqllldAQRQAAL 1547
Cdd:pfam04012 24 EKMLEQAIRDMQSELVKARQALAQTIARQKQLERRLEQQTEQAKKLEE--KAQAA-LTKGNEELAREA-----LAEKKSL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1548 EreeatathQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQA--QSQRLQKHL---------SSLEAEVQ 1616
Cdd:pfam04012 96 E--------KQAEALETQLAQQRSAVEQLRKQLAALETKIQQLKAKKNLLKArlKAAKAQEAVqtslgslstSSATDSFE 167
|
170
....*....|....*.
gi 568959095 1617 RKQDVLKEMAAEMNAS 1632
Cdd:pfam04012 168 RIEEKIEEREARADAA 183
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1277-1626 |
1.17e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 53.75 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1277 EAETLQKAERASLEQKSRRA-LEQLREQLEAEERSAQAALRAEKEAEKEAALLQLREQLEGERKEAVAGLEKKHSAELEQ 1355
Cdd:PRK01156 330 KLSVLQKDYNDYIKKKSRYDdLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKK 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1356 LCSSLEAKHQEV---ISSLQKKIEGAQQKEEaQLQESLGWAEQR----------AHQKVHQVTEYEQELSSLLRDKRQEV 1422
Cdd:PRK01156 410 ELNEINVKLQDIsskVSSLNQRIRALRENLD-ELSRNMEMLNGQsvcpvcgttlGEEKSNHIINHYNEKKSRLEEKIREI 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1423 ERE----HERKMDKMKEEHWQEMADAReRYEAEERK---QRADLlGHLTGELERLRRAHERELESMRQEQDQQLEDLRRR 1495
Cdd:PRK01156 489 EIEvkdiDEKIVDLKKRKEYLESEEIN-KSINEYNKiesARADL-EDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSK 566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1496 HRDH-----ERKLQDLEV------ELSSRTKDVKARLAQLNVQ--------EENIRK----------------EKQLLLD 1540
Cdd:PRK01156 567 RTSWlnalaVISLIDIETnrsrsnEIKKQLNDLESRLQEIEIGfpddksyiDKSIREieneannlnnkyneiqENKILIE 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1541 AQRQAALEREEATATHQHLEEAKKEHT-HLLETK---QQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQ 1616
Cdd:PRK01156 647 KLRGKIDNYKKQIAEIDSIIPDLKEITsRINDIEdnlKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLE 726
|
410
....*....|
gi 568959095 1617 RKQDVLKEMA 1626
Cdd:PRK01156 727 SMKKIKKAIG 736
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1442-1632 |
1.58e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.52 E-value: 1.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1442 ADARERYEAEERKQRADLLGHLTGELERLrrahERELESMRQEQDQ---QLEDLRRRHRDHERKLQDLEVELSSRTKDVK 1518
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDAL----QAELEELNEEYNElqaELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1519 ARLAQLNVQEENIRKEKQLLLDAQRQAALEREEA-----TATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQ 1593
Cdd:COG3883 90 ERARALYRSGGSVSYLDVLLGSESFSDFLDRLSAlskiaDADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190
....*....|....*....|....*....|....*....
gi 568959095 1594 VDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNAS 1632
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAA 208
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1210-1765 |
2.70e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.80 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1210 KEKSLSLLKAQLQKATAEEKEKEEETKIREEESRRLVcLRAQVQSRTEAFENQIRTEQQAALQRLR---EEAETLQKAER 1286
Cdd:pfam05483 238 KEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLE-EKTKLQDENLKELIEKKDHLTKELEDIKmslQRSMSTQKALE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1287 ASLeQKSRRALEQLREQLEA--EERSAQAALRAEKEAEKEAALLQLREQLEGERKEavagLEKKHSaELEQLCSSLEAKH 1364
Cdd:pfam05483 317 EDL-QIATKTICQLTEEKEAqmEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQR----LEKNED-QLKIITMELQKKS 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1365 QEV--ISSLQ--KKIEGAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSLLRDKRQEV-EREHERKMDKMKEEHW- 1438
Cdd:pfam05483 391 SELeeMTKFKnnKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIhDLEIQLTAIKTSEEHYl 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1439 QEMADARERYEAEERKQrADLLGHlTGELERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEvelssrtkDVK 1518
Cdd:pfam05483 471 KEVEDLKTELEKEKLKN-IELTAH-CDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIE--------NLE 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1519 ARLAQLNVQEENIRKEKQLLLDaQRQAALEREEATATHQHLEEAKKE-HTHLLETK-QQLRRTIDDLRVRRVELESQVDL 1596
Cdd:pfam05483 541 EKEMNLRDELESVREEFIQKGD-EVKCKLDKSEENARSIEYEVLKKEkQMKILENKcNNLKKQIENKNKNIEELHQENKA 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1597 LQAQSQRLQKHLSSLEAEVQRKQDVL---KEMAAEMNASPHPEpglhIEDlRKSLDTNKNQEVSSSLSLSKEEIDLSMES 1673
Cdd:pfam05483 620 LKKKGSAENKQLNAYEIKVNKLELELasaKQKFEEIIDNYQKE----IED-KKISEEKLLEEVEKAKAIADEAVKLQKEI 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1674 VR--QFLSAEGVAVRNAKEFLVRQTRSMRRRQTALKAAQQHWRHELASAQEVDEDLPGTEVLgNMRKNLNEETRHLDEMK 1751
Cdd:pfam05483 695 DKrcQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELL-SLKKQLEIEKEEKEKLK 773
|
570
....*....|....
gi 568959095 1752 SAMRKGHDLLKKKE 1765
Cdd:pfam05483 774 MEAKENTAILKDKK 787
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1394-1621 |
3.01e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.33 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1394 EQRAHQKVHQVTEYEQELSSLLRDKRQEVErEHERKMDKMKEEHW----QEMADARERYEAEERKQRADLLGHLTgELER 1469
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELE-EAEAALEEFRQKNGlvdlSEEAKLLLQQLSELESQLAEARAELA-EAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1470 LRRAHERELESMRQE-----QDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLL---DA 1541
Cdd:COG3206 241 RLAALRAQLGSGPDAlpellQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILaslEA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1542 QRQAALEREEATAthQHLEEAKKEHTHLLETKQQLRRtiddlrvrrveLESQVDLLQAQSQRLQKHLSslEAEVQRKQDV 1621
Cdd:COG3206 321 ELEALQAREASLQ--AQLAQLEARLAELPELEAELRR-----------LEREVEVARELYESLLQRLE--EARLAEALTV 385
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1180-1544 |
4.08e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 4.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1180 EEGEEEEEEEEKEEEEEEEEEEEVCQLYQQKEKSLSL--LKAQLQKATAEEKEKEEETKIREEES--RRLVCLRAQVQSR 1255
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYqaLLKEKREYEGYELLKEKEALERQKEAieRQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1256 TEAFEnQIRTEQQAALQRLREEAETLqkaeRASLEQKSRRALEQLREqLEAEERSAQAALRaekeaekeaALLQLREQLE 1335
Cdd:TIGR02169 257 TEEIS-ELEKRLEEIEQLLEELNKKI----KDLGEEEQLRVKEKIGE-LEAEIASLERSIA---------EKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1336 GERKEAVAGLEKKhSAELEQLCSSLEAKHQEVIsSLQKKIEGAQQKEEAQLQEsLGWAEQRAHQKVHQVTEYEQELSSLL 1415
Cdd:TIGR02169 322 ERLAKLEAEIDKL-LAEIEELEREIEEERKRRD-KLTEEYAELKEELEDLRAE-LEEVDKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1416 RdKRQEVEREHERKMDKMKEEHwQEMADARERYEAEERKQRAdllghLTGELERLR---RAHERELESMRqeqdQQLEDL 1492
Cdd:TIGR02169 399 R-EINELKRELDRLQEELQRLS-EELADLNAAIAGIEAKINE-----LEEEKEDKAleiKKQEWKLEQLA----ADLSKY 467
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 568959095 1493 RRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIR--KEKQLLLDAQRQ 1544
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRggRAVEEVLKASIQ 521
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
1374-1628 |
4.09e-06 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 51.19 E-value: 4.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1374 KIEGAQQKEEAQLQESLGWAEQR-AHQKVHQVTEYE--QELSSLLRDKRQEVE-------REHERKMDK------MKEEH 1437
Cdd:pfam15558 16 RHKEEQRMRELQQQAALAWEELRrRDQKRQETLERErrLLLQQSQEQWQAEKEqrkarlgREERRRADRrekqviEKESR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1438 WQEMADARE----------RYEAEERKQradllghltgELERLRRAHERELESMRQEQDQQL----EDLRRRHRDHERKL 1503
Cdd:pfam15558 96 WREQAEDQEnqrqekleraRQEAEQRKQ----------CQEQRLKEKEEELQALREQNSLQLqerlEEACHKRQLKEREE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1504 QdLEVELSSRTKDVK--ARLAQLNVQEENIRKEKQLLLDAQRQAALEREE--ATATHQHL-EEAKKEhthlletKQQLRR 1578
Cdd:pfam15558 166 Q-KKVQENNLSELLNhqARKVLVDCQAKAEELLRRLSLEQSLQRSQENYEqlVEERHRELrEKAQKE-------EEQFQR 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 568959095 1579 TiddlRVRRVELESQVD-----LLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAE 1628
Cdd:pfam15558 238 A----KWRAEEKEEERQehkeaLAELADRKIQQARQVAHKTVQDKAQRARELNLE 288
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1292-1627 |
4.43e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 52.26 E-value: 4.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1292 KSRRALEQLREQLEAEERSAQAALRaekeaekeaaLLQLREQLEgERKEAVAGLEKKHSAELEQLCSSLEA-KHQEVISS 1370
Cdd:COG3096 283 LSERALELRRELFGARRQLAEEQYR----------LVEMARELE-ELSARESDLEQDYQAASDHLNLVQTAlRQQEKIER 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1371 LQKKIEGAQQKEEAQLQESLGWAEQRAHQKVhQVTEYEQELSSL---LRDKRQEVEREHERKMdkmkeeHWQEMADARER 1447
Cdd:COG3096 352 YQEDLEELTERLEEQEEVVEEAAEQLAEAEA-RLEAAEEEVDSLksqLADYQQALDVQQTRAI------QYQQAVQALEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1448 yeAEERKQRADLLGHLTGELERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEV---ELSSRTKDVKARlaql 1524
Cdd:COG3096 425 --ARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKiagEVERSQAWQTAR---- 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1525 nvqeENIRKEKQLLLDAQRQAALEREEATAtHQHLEEAKKEHTHLLETKQQLRRTI---DDLRVRRVELESQVDLLQAQS 1601
Cdd:COG3096 499 ----ELLRRYRSQQALAQRLQQLRAQLAEL-EQRLRQQQNAERLLEEFCQRIGQQLdaaEELEELLAELEAQLEELEEQA 573
|
330 340
....*....|....*....|....*.
gi 568959095 1602 QRLQKHLSSLEAEVQRKQDVLKEMAA 1627
Cdd:COG3096 574 AEAVEQRSELRQQLEQLRARIKELAA 599
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1261-1549 |
4.66e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 52.27 E-value: 4.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1261 NQIRTEQQAALQRLREEaetlqkaeraslEQKSRRALEQLREQLEAEERSA-QAALraEKEAEKEAALLQLREQLEgERK 1339
Cdd:PRK04863 843 NRRRVELERALADHESQ------------EQQQRSQLEQAKEGLSALNRLLpRLNL--LADETLADRVEEIREQLD-EAE 907
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1340 EAVAGLEK--KHSAELEQLCSSLEAKHQEvISSLQKKIEGAQQKEEAQLQESLGWAE---QRAH---QKVHQVTEYEQEL 1411
Cdd:PRK04863 908 EAKRFVQQhgNALAQLEPIVSVLQSDPEQ-FEQLKQDYQQAQQTQRDAKQQAFALTEvvqRRAHfsyEDAAEMLAKNSDL 986
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1412 SSLLRDKRQEVEREHERKMDKMKE------EHWQEMADARERYEA-----EERKQRADLLG-HLTGELERLRRAHERELe 1479
Cdd:PRK04863 987 NEKLRQRLEQAEQERTRAREQLRQaqaqlaQYNQVLASLKSSYDAkrqmlQELKQELQDLGvPADSGAEERARARRDEL- 1065
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568959095 1480 smrqeqDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKA---RLAQLNVQEENIRKEKQLLLDAQRQAALER 1549
Cdd:PRK04863 1066 ------HARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKlerDYHEMREQVVNAKAGWCAVLRLVKDNGVER 1132
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1395-1631 |
6.11e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.88 E-value: 6.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1395 QRAHQKVHQ-VTEY---------EQELSsLLRDKRQEVEREHERkmdkmkeehwQEMADARERYEAEERKQRADLLGHLT 1464
Cdd:COG3096 812 QRLHQAFSQfVGGHlavafapdpEAELA-ALRQRRSELERELAQ----------HRAQEQQLRQQLDQLKEQLQLLNKLL 880
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1465 GELERLRRA-HERELESMRQEQDQQLEDLR--RRHRDHERKLQDLEVELSSRTKD---VKARLAQLNVQEENIRKEKQLL 1538
Cdd:COG3096 881 PQANLLADEtLADRLEELREELDAAQEAQAfiQQHGKALAQLEPLVAVLQSDPEQfeqLQADYLQAKEQQRRLKQQIFAL 960
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1539 LD-AQRQAALEREEATathQHLEEAKKEHTHLletKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAevqr 1617
Cdd:COG3096 961 SEvVQRRPHFSYEDAV---GLLGENSDLNEKL---RARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDA---- 1030
|
250
....*....|....
gi 568959095 1618 KQDVLKEMAAEMNA 1631
Cdd:COG3096 1031 KQQTLQELEQELEE 1044
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1328-1752 |
6.44e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 6.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1328 LQLREQLEGERKEAVAGLEKKHSAELEQLCSSLEAKHQEvisslqkkIEGAQQKEEAQLQESLGWAEQ-RAHQKVHQVTE 1406
Cdd:pfam15921 115 LQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHE--------LEAAKCLKEDMLEDSNTQIEQlRKMMLSHEGVL 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1407 yeQELSSLLRDKRQEVERE-HERkmDKMKEEHWQEMADARERYEAEERKQradlLGHLTGELERLrrahERELESMRQEQ 1485
Cdd:pfam15921 187 --QEIRSILVDFEEASGKKiYEH--DSMSTMHFRSLGSAISKILRELDTE----ISYLKGRIFPV----EDQLEALKSES 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1486 DQQLEDLRRRHRDH-ERKLQDLEVELSSRTKDVKARLAQLNvqeeNIRKEKQLLldaQRQAaleREEATATHQHLEEAKK 1564
Cdd:pfam15921 255 QNKIELLLQQHQDRiEQLISEHEVEITGLTEKASSARSQAN----SIQSQLEII---QEQA---RNQNSMYMRQLSDLES 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1565 EHTHLLETKQQLRRTIDDlrvRRVELESQV-----DLLQAQSQR---------LQKHLSSLEAEVQRKQdvlKEMAAEMN 1630
Cdd:pfam15921 325 TVSQLRSELREAKRMYED---KIEELEKQLvlansELTEARTERdqfsqesgnLDDQLQKLLADLHKRE---KELSLEKE 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1631 ASPH-----PEPGLHIEDLRKSLDtNKNQEVSSSL---SLSKEEIDLSMEsvRQFLSAEG------------VAVRNAKE 1690
Cdd:pfam15921 399 QNKRlwdrdTGNSITIDHLRRELD-DRNMEVQRLEallKAMKSECQGQME--RQMAAIQGkneslekvssltAQLESTKE 475
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568959095 1691 FLVRQTRSMRRRQTALKAAQQHWRHELASAQEVDEDLPGTEV-LGNMRKNLNEETRHLDEMKS 1752
Cdd:pfam15921 476 MLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAeITKLRSRVDLKLQELQHLKN 538
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1250-1599 |
6.96e-06 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 51.30 E-value: 6.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1250 AQVQSRTEAFENQIRTEQQAALQRLREEAETLQKA---ERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKE-- 1324
Cdd:pfam09731 142 ESATAVAKEAKDDAIQAVKAHTDSLKEASDTAEISrekATDSALQKAEALAEKLKEVINLAKQSEEEAAPPLLDAAPEtp 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1325 ----AALLQLREQLEGERKEA--VAGLEKKHSAELEQLCSSLEAKHQEVISSLqKKIEGAQQKEEAQLQESLGWAEQRAH 1398
Cdd:pfam09731 222 pklpEHLDNVEEKVEKAQSLAklVDQYKELVASERIVFQQELVSIFPDIIPVL-KEDNLLSNDDLNSLIAHAHREIDQLS 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1399 QK-VHQVTEYEQELSSLLRDKRQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRADLLGHLTGELERLRRAHERE 1477
Cdd:pfam09731 301 KKlAELKKREEKHIERALEKQKEELDKLAEELSARLEEVRAADEAQLRLEFEREREEIRESYEEKLRTELERQAEAHEEH 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1478 LESMRQEQDQQLEdlrRRHrdherklqdlevelssrTKDVKARLAqlnvQEENIRKEKqllLDAQRQAALEREEATATHQ 1557
Cdd:pfam09731 381 LKDVLVEQEIELQ---REF-----------------LQDIKEKVE----EERAGRLLK---LNELLANLKGLEKATSSHS 433
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 568959095 1558 HLEEAKKEHTHLLETKQQLRRTIDD--LRVRRVELESQVDLLQA 1599
Cdd:pfam09731 434 EVEDENRKAQQLWLAVEALRSTLEDgsADSRPRPLVRELKALKE 477
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1260-1782 |
7.11e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 7.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1260 ENQIRTEQQAaLQRLREEAETLQKaERASLEQKSRRALEQLRE-QLEAEERSAQaalraekEAEKEAALLQLREQLEGER 1338
Cdd:TIGR04523 231 KDNIEKKQQE-INEKTTEISNTQT-QLNQLKDEQNKIKKQLSEkQKELEQNNKK-------IKELEKQLNQLKSEISDLN 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1339 KEAVAGLEKKHSAELEQLCSSLE------AKHQEVISSLQKKIEGAQQK------EEAQLQESLGWAEQRAHQKVHQVTE 1406
Cdd:TIGR04523 302 NQKEQDWNKELKSELKNQEKKLEeiqnqiSQNNKIISQLNEQISQLKKEltnsesENSEKQRELEEKQNEIEKLKKENQS 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1407 YEQELSSL------LRDKRQEVEREHERKMDKMK--EEHWQEMADARERYEAEERKQrADLLGHLTGELERLRRAHErEL 1478
Cdd:TIGR04523 382 YKQEIKNLesqindLESKIQNQEKLNQQKDEQIKklQQEKELLEKEIERLKETIIKN-NSEIKDLTNQDSVKELIIK-NL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1479 ESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKarlaQLNVQEENIRKEKQLLldAQRQAALEREEatathQH 1558
Cdd:TIGR04523 460 DNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELK----KLNEEKKELEEKVKDL--TKKISSLKEKI-----EK 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1559 LEEAKKEhthlLETK-QQLRRTI--DDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEmnasphp 1635
Cdd:TIGR04523 529 LESEKKE----KESKiSDLEDELnkDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKE------- 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1636 epglhIEDLRKSLDTNknqevSSSLSLSKEEIDLSMESVRQfLSAEGVAVRNAKEFLVRQTRSMrrrQTALKAAQQHWRH 1715
Cdd:TIGR04523 598 -----KKDLIKEIEEK-----EKKISSLEKELEKAKKENEK-LSSIIKNIKSKKNKLKQEVKQI---KETIKEIRNKWPE 663
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568959095 1716 ELASAQEVDEDLpgTEVLGNMRKNLNEETRHLDEMKSAMRKGHDLLKKKEE-KLIQLESSLQEEVSDE 1782
Cdd:TIGR04523 664 IIKKIKESKTKI--DDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLEEKyKEIEKELKKLDEFSKE 729
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1359-1537 |
8.22e-06 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 50.14 E-value: 8.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1359 SLEAKHQEVISSLQKKIEGAQQKEE--AQLQESLGW------------AEQRAHQKVHQVTE---YEQELSSLlRDKRQE 1421
Cdd:pfam09787 1 NLESAKQELADYKQKAARILQSKEKliASLKEGSGVegldsstaltleLEELRQERDLLREEiqkLRGQIQQL-RTELQE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1422 VEREHERKMDKMKEEhwqeMADARERYEAEERKqradllghltgelerlRRAHERELESMRQEQDQQLEDLRR------- 1494
Cdd:pfam09787 80 LEAQQQEEAESSREQ----LQELEEQLATERSA----------------RREAEAELERLQEELRYLEEELRRskatlqs 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568959095 1495 RHRDHERKLQDLEVELSSRT------KDVKARLAQLNvqEENIRKEKQL 1537
Cdd:pfam09787 140 RIKDREAEIEKLRNQLTSKSqssssqSELENRLHQLT--ETLIQKQTML 186
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1249-1506 |
9.54e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.11 E-value: 9.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1249 RAQVQSRTEAFENQIrTEQQAALQRLREEAETLQK--AERASLEQKSrraLEQLREQLEAEERSAQAALRAEKEAEKEAA 1326
Cdd:COG3096 845 RSELERELAQHRAQE-QQLRQQLDQLKEQLQLLNKllPQANLLADET---LADRLEELREELDAAQEAQAFIQQHGKALA 920
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1327 LLQ-----LR------EQLEGERKEAVAGLE--KKHSAELEQLCSSLEA-----------KHQEVISSLQKKIEGAqqkE 1382
Cdd:COG3096 921 QLEplvavLQsdpeqfEQLQADYLQAKEQQRrlKQQIFALSEVVQRRPHfsyedavgllgENSDLNEKLRARLEQA---E 997
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1383 EAQLQeslgwAEQRAHQKVHQVTEYEQELSSLL--RDKRQEVEREHERKMDKMKeehWQEMADARERyeAEERKQRadll 1460
Cdd:COG3096 998 EARRE-----AREQLRQAQAQYSQYNQVLASLKssRDAKQQTLQELEQELEELG---VQADAEAEER--ARIRRDE---- 1063
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568959095 1461 ghLTGELERLrRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDL 1506
Cdd:COG3096 1064 --LHEELSQN-RSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQE 1106
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1176-1783 |
1.41e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1176 EDEEEEGEEEEEEEEKEeeeeeeeeeevcqlyQQKEKSLSLLKAQLQKATAEEKEKEEETKIREEESRRLVCLRAQVQSR 1255
Cdd:pfam02463 169 RKKKEALKKLIEETENL---------------AELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1256 TEAFENQIRTEQQAALQRLREEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKEAALLQLREQLE 1335
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1336 GERKEAVAGLEKKHSAELEQLCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVHQVTEYE------- 1408
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLssaaklk 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1409 --------------QELSSLLRDKRQEVEREHERKMDKMKEEhwQEMADARERYEAEERKQRADLLGHLT-GELERLRRA 1473
Cdd:pfam02463 394 eeelelkseeekeaQLLLELARQLEDLLKEEKKEELEILEEE--EESIELKQGKLTEEKEELEKQELKLLkDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1474 HERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALER---E 1550
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTaviV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1551 EATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQS-QRLQKHLSSLEAEVQRKQDVLKEMAAEm 1629
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPIlNLAQLDKATLEADEDDKRAKVVEGILK- 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1630 naspHPEPGLHIEDLRKSLDTNKNQEVSSSLSLSKEEIDLSMESVRQFLSAEgvAVRNAKEFLVRQTRSMRRRQTALKAA 1709
Cdd:pfam02463 631 ----DTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEI--QELQEKAESELAKEEILRRQLEIKKK 704
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568959095 1710 QQHWRHELASAQEVDEDLPGTEVLGNMRKNLNEETRHLDEMKSAMRKGHDLLKKKEEKLIQLESSLQEEVSDED 1783
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAE 778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1240-1618 |
1.50e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1240 EESRrlvclRAQVQSRTEAFENQIRTeqqaaLQRLREEAETLQK--AERASLEQKSRRaLEQLREQLEAEERSAQAalRA 1317
Cdd:PRK03918 264 LEER-----IEELKKEIEELEEKVKE-----LKELKEKAEEYIKlsEFYEEYLDELRE-IEKRLSRLEEEINGIEE--RI 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1318 EKEAEKEAALLQLREQLEGERKEaVAGLEKKHS---------AELEQLCSSLEAKHQEVISSLQKKIEGAQ---QKEEAQ 1385
Cdd:PRK03918 331 KELEEKEERLEELKKKLKELEKR-LEELEERHElyeeakakkEELERLKKRLTGLTPEKLEKELEELEKAKeeiEEEISK 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1386 LQESLGWAEQRAHQKVHQVTEYE----------QELSSllrDKRQEVEREHERKMDKMKEEhWQEMADARERYEAEERKQ 1455
Cdd:PRK03918 410 ITARIGELKKEIKELKKAIEELKkakgkcpvcgRELTE---EHRKELLEEYTAELKRIEKE-LKEIEEKERKLRKELREL 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1456 RADLLGHltGELERLRRAHE--RELESMRQEQDqqLEDLRRRHRDHE---RKLQDLEVELSS------RTKDVKARLAQL 1524
Cdd:PRK03918 486 EKVLKKE--SELIKLKELAEqlKELEEKLKKYN--LEELEKKAEEYEklkEKLIKLKGEIKSlkkeleKLEELKKKLAEL 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1525 NVQEENIRKEKQLLLDAQRQAALER-EEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQR 1603
Cdd:PRK03918 562 EKKLDELEEELAELLKELEELGFESvEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKR 641
|
410
....*....|....*
gi 568959095 1604 LQKHLSSLEaEVQRK 1618
Cdd:PRK03918 642 LEELRKELE-ELEKK 655
|
|
| WW |
pfam00397 |
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ... |
58-87 |
1.51e-05 |
|
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.
Pssm-ID: 459800 [Multi-domain] Cd Length: 30 Bit Score: 43.26 E-value: 1.51e-05
10 20 30
....*....|....*....|....*....|
gi 568959095 58 LPKGWKPCQNITGDLYYFNFDTGQSIWDHP 87
Cdd:pfam00397 1 LPPGWEERWDPDGRVYYYNHETGETQWEKP 30
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
1266-1550 |
1.70e-05 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 49.15 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1266 EQQAALQRLREEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKEAALLQLREQLEgERKEAVAGL 1345
Cdd:pfam13868 44 RLDEMMEEERERALEEEEEKEEERKEERKRYRQELEEQIEEREQKRQEEYEEKLQEREQMDEIVERIQEE-DQAEAEEKL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1346 EKKhsaeleqlcsslEAKHQEVISSLQKKIEGAQQKEEAQLQEslgwaEQRAHQKVHQVTEYEQELSSLLRDKRQEVERE 1425
Cdd:pfam13868 123 EKQ------------RQLREEIDEFNEEQAEWKELEKEEEREE-----DERILEYLKEKAEREEEREAEREEIEEEKERE 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1426 HER-------------KMDKMKEEHWQEMADARER-----YEAEERKQRADLLGH-----------LTGELERLRRAHER 1476
Cdd:pfam13868 186 IARlraqqekaqdekaERDELRAKLYQEEQERKERqkereEAEKKARQRQELQQAreeqielkerrLAEEAEREEEEFER 265
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568959095 1477 ELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELssrtkDVKARLAQLNVQEENIRKEKQLLLDAQRQAALERE 1550
Cdd:pfam13868 266 MLRKQAEDEEIEQEEAEKRRMKRLEHRRELEKQI-----EEREEQRAAEREEELEEGERLREEEAERRERIEEE 334
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1248-1791 |
1.90e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 49.82 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1248 LRAQVQSRTEAFENQIRTEQQAaLQRLREEAETLQKaeraslEQKSRRALEQLreqLEAEERSAQAALRAEKEAEKEAAL 1327
Cdd:pfam10174 47 LRKEEAARISVLKEQYRVTQEE-NQHLQLTIQALQD------ELRAQRDLNQL---LQQDFTTSPVDGEDKFSTPELTEE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1328 LQLREQLEGERKEAVAGLEKKHSAELEqlcSSLEAKHQEVIS---SLQKKIEGAQQKEEAQLQESLGWAEQRahqkvhQV 1404
Cdd:pfam10174 117 NFRRLQSEHERQAKELFLLRKTLEEME---LRIETQKQTLGArdeSIKKLLEMLQSKGLPKKSGEEDWERTR------RI 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1405 TEYE---QELSSLLRDKrqEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRAdllghlTGELERLRRAHERELESM 1481
Cdd:pfam10174 188 AEAEmqlGHLEVLLDQK--EKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDTK------ISSLERNIRDLEDEVQML 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1482 RQEQDQQLEDlrrrhrdHERKLQDLEVeLSSRTKDVKARLAQLNvQEENiRKEKQLLldaqrqaALEREEATATHQ---- 1557
Cdd:pfam10174 260 KTNGLLHTED-------REEEIKQMEV-YKSHSKFMKNKIDQLK-QELS-KKESELL-------ALQTKLETLTNQnsdc 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1558 --HLEEAKKEhthlLETKQQ----LRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNa 1631
Cdd:pfam10174 323 kqHIEVLKES----LTAKEQraaiLQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKIN- 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1632 sphpepGLH--IEDLrksldtnknQEVSSSLSLSKEEIDLSMESVRQFLSAEGVAVRNAKEFLVRQTRSMRRRQTALKAA 1709
Cdd:pfam10174 398 ------VLQkkIENL---------QEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRERE 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1710 QQHWRHELASAQEVDEDLpgTEVLGNMRKNLNEETRHLDEMKSAMRKGHDLLKKKEEKLIQLESSLQEEVSDEDTLKGSS 1789
Cdd:pfam10174 463 DRERLEELESLKKENKDL--KEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQL 540
|
..
gi 568959095 1790 IK 1791
Cdd:pfam10174 541 KK 542
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1197-1524 |
1.91e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1197 EEEEEEVCQLYQQKEKSLSLLKAQLQKATAEEKEKEEETKireeesrrlvclrAQVQSRTEAFENQI---RTEQQAALQR 1273
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ-------------LRVKEKIGELEAEIaslERSIAEKERE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1274 LREEAETLQKAEraSLEQKSRRALEQLREQLEAEERsaqaalraekeaekeaallqLREQLEGERKEAVAGLEKKHSaEL 1353
Cdd:TIGR02169 317 LEDAEERLAKLE--AEIDKLLAEIEELEREIEEERK--------------------RRDKLTEEYAELKEELEDLRA-EL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1354 EQLCSSLEAKHQEViSSLQKKIEGAQQKEEaQLQESLGWAEQRAHQKVHQVTEYEQELSSlLRDKRQEVEREHERKMDKM 1433
Cdd:TIGR02169 374 EEVDKEFAETRDEL-KDYREKLEKLKREIN-ELKRELDRLQEELQRLSEELADLNAAIAG-IEAKINELEEEKEDKALEI 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1434 KEEHWQ--EMADARERYEAEERKQRADLlghltgelerlrRAHERELESMRQEQDqQLEDLRRRHRDHERKLQDLEVELS 1511
Cdd:TIGR02169 451 KKQEWKleQLAADLSKYEQELYDLKEEY------------DRVEKELSKLQRELA-EAEAQARASEERVRGGRAVEEVLK 517
|
330
....*....|...
gi 568959095 1512 SRTKDVKARLAQL 1524
Cdd:TIGR02169 518 ASIQGVHGTVAQL 530
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1378-1654 |
2.17e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 49.67 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1378 AQQKEEAQLQESLGWAE--QRAHQKvhQVTEYEQELSSLLRDKRQEVEREheRKMDKMKEEHWQEMADARERYEAEERKQ 1455
Cdd:PRK10929 20 ATAPDEKQITQELEQAKaaKTPAQA--EIVEALQSALNWLEERKGSLERA--KQYQQVIDNFPKLSAELRQQLNNERDEP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1456 RADLLGHLTGELE-RLRRAHERELESMR---QEQD-------------QQLEDLRRRHRDHERKLQDLEvelSSRTKDVK 1518
Cdd:PRK10929 96 RSVPPNMSTDALEqEILQVSSQLLEKSRqaqQEQDrareisdslsqlpQQQTEARRQLNEIERRLQTLG---TPNTPLAQ 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1519 ARLAQLNVqEENIRKEKQLLLDAQRQAALEREEATatHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVE--LESqVDL 1596
Cdd:PRK10929 173 AQLTALQA-ESAALKALVDELELAQLSANNRQELA--RLRSELAKKRSQQLDAYLQALRNQLNSQRQREAEraLES-TEL 248
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568959095 1597 LQAQSQRLQKHLSSlEAEVQRK-QDVLKEMAAEMN--ASPHPEPGLHIEDLRKSLDTNKNQ 1654
Cdd:PRK10929 249 LAEQSGDLPKSIVA-QFKINRElSQALNQQAQRMDliASQQRQAASQTLQVRQALNTLREQ 308
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1274-1786 |
2.21e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1274 LREEAETLQKAERASLE---QKSRRALEQLREQLEAE----ERSAQAALRAEKEAEKEAALLQlreqlegERKEAVAGLE 1346
Cdd:pfam15921 243 VEDQLEALKSESQNKIElllQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIIQ-------EQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1347 KKHSAELEQLCSSLEAKHQEVISSLQKKIEgaqqkeeaQLQESLGWAEqrahqkvhqvteyeqelssllrdkrqevereh 1426
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKIE--------ELEKQLVLAN-------------------------------- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1427 erkmdkmkeehwQEMADAReryeaEERKQRADLLGHLTGELER-LRRAHERELE-SMRQEQDQQLED-----------LR 1493
Cdd:pfam15921 356 ------------SELTEAR-----TERDQFSQESGNLDDQLQKlLADLHKREKElSLEKEQNKRLWDrdtgnsitidhLR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1494 RRHRDHERKLQDLEVELSSRTKDVKARLAQ--LNVQEENIRKEKQLLLDAQRQAALER-----EEATATHQHLEEAKKEH 1566
Cdd:pfam15921 419 RELDDRNMEVQRLEALLKAMKSECQGQMERqmAAIQGKNESLEKVSSLTAQLESTKEMlrkvvEELTAKKMTLESSERTV 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1567 THLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEaEVQRKQDVLKEMAAEMNASphpepglhIEDLRK 1646
Cdd:pfam15921 499 SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR-NVQTECEALKLQMAEKDKV--------IEILRQ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1647 SLDtNKNQEV----------SSSLSLSKEEIDLSMESVRQFLSAEGVAVRNAKEFLVRQTRSMRRRQTALKAAQQHWRHE 1716
Cdd:pfam15921 570 QIE-NMTQLVgqhgrtagamQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAV 648
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568959095 1717 LASAQEVDEDLpgTEVlGNMRKNLNEETRHLDEMKSAMRKGHDLLKKKEEKL-IQLESSLQEEVSDEDTLK 1786
Cdd:pfam15921 649 KDIKQERDQLL--NEV-KTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLkMQLKSAQSELEQTRNTLK 716
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1467-1619 |
3.16e-05 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 48.09 E-value: 3.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1467 LERLRRAHERELESMRQEqDQQLedlrrrhRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRqaa 1546
Cdd:smart00787 142 LEGLKEGLDENLEGLKED-YKLL-------MKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK--- 210
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568959095 1547 lerEEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDllQAQSQRLQ------KHLSSLEAEVQRKQ 1619
Cdd:smart00787 211 ---EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA--EAEKKLEQcrgftfKEIEKLKEQLKLLQ 284
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1206-1555 |
3.67e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.95 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1206 LYQQKEKSLSLLKAQLQKATAEEK--EKEEETKIREEESRRLVCLRAQVQSRTEAFENQIRTEQQA----ALQRLREEAE 1279
Cdd:pfam05483 444 LLQAREKEIHDLEIQLTAIKTSEEhyLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASdmtlELKKHQEDII 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1280 TLQKAERASLEQksrraLEQLREQlEAEERSAQAALRAEKEAEKEAALLQLREQLEGERKEAVAGLEK-KHSAELEQLCS 1358
Cdd:pfam05483 524 NCKKQEERMLKQ-----IENLEEK-EMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKeKQMKILENKCN 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1359 SLEAKhqevISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVhQVTEYEQELSSlLRDKRQEVEREHERKMD--KMKEE 1436
Cdd:pfam05483 598 NLKKQ----IENKNKNIEELHQENKALKKKGSAENKQLNAYEI-KVNKLELELAS-AKQKFEEIIDNYQKEIEdkKISEE 671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1437 H-WQEMADARERY-EAEERKQRADL-LGHLTGELERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSsr 1513
Cdd:pfam05483 672 KlLEEVEKAKAIAdEAVKLQKEIDKrCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELS-- 749
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 568959095 1514 tkDVKARLAQLNVQEENIRKEKQLLldaqrqaALEREEATAT 1555
Cdd:pfam05483 750 --NIKAELLSLKKQLEIEKEEKEKL-------KMEAKENTAI 782
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
1436-1632 |
4.75e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 48.53 E-value: 4.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1436 EHWQEMADARERYE-----AEERKQRADLLGHLTGELERLR-RAHErelesmrqeqDQQLEDLRRRHRDHER---KLQDL 1506
Cdd:COG0497 162 EAYRAWRALKKELEelradEAERARELDLLRFQLEELEAAAlQPGE----------EEELEEERRRLSNAEKlreALQEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1507 EVELSSRTKDVKARLAQLNVQEENIRKekqllLDAQRQAALER-EEATAthqHLEEAKKEHTHLLET------------- 1572
Cdd:COG0497 232 LEALSGGEGGALDLLGQALRALERLAE-----YDPSLAELAERlESALI---ELEEAASELRRYLDSlefdperleevee 303
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568959095 1573 -KQQLRR-------TIDDLRVRRVELESQVDLLQAQSQRLQKhlssLEAEVQRKQDVLKEMAAEMNAS 1632
Cdd:COG0497 304 rLALLRRlarkygvTVEELLAYAEELRAELAELENSDERLEE----LEAELAEAEAELLEAAEKLSAA 367
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
1475-1632 |
5.14e-05 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 46.74 E-value: 5.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1475 ERELESMRQEQDQQLEDLRR-------RHRDHERKLQDLEVELSSRTKdvKARLAqLNVQEENIRKEKqllldAQRQAAL 1547
Cdd:COG1842 25 EKMLDQAIRDMEEDLVEARQalaqviaNQKRLERQLEELEAEAEKWEE--KARLA-LEKGREDLAREA-----LERKAEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1548 ErEEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQsQRLQKHLSSLEAE--------VQRKQ 1619
Cdd:COG1842 97 E-AQAEALEAQLAQLEEQVEKLKEALRQLESKLEELKAKKDTLKARAKAAKAQ-EKVNEALSGIDSDdatsalerMEEKI 174
|
170
....*....|...
gi 568959095 1620 DvlkEMAAEMNAS 1632
Cdd:COG1842 175 E---EMEARAEAA 184
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1403-1538 |
5.35e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 5.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1403 QVTEYEQELSSLlRDKRQEVEREHErKMDKMKEEHWQEMADARERYEAEERKQR----ADLLGHLTGELERLRRAHErEL 1478
Cdd:COG1579 32 ELAELEDELAAL-EARLEAAKTELE-DLEKEIKRLELEIEEVEARIKKYEEQLGnvrnNKEYEALQKEIESLKRRIS-DL 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1479 ESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLL 1538
Cdd:COG1579 109 EDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| WW |
cd00201 |
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ... |
59-89 |
5.58e-05 |
|
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Pssm-ID: 238122 [Multi-domain] Cd Length: 31 Bit Score: 41.74 E-value: 5.58e-05
10 20 30
....*....|....*....|....*....|.
gi 568959095 59 PKGWKPCQNITGDLYYFNFDTGQSIWDHPCD 89
Cdd:cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPRE 31
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
1249-1605 |
5.75e-05 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 48.28 E-value: 5.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1249 RAQVQSRTEAFENQIRTEQQAALQRLREEA---ETLQKAE--RASLEQKSRRALEQLReqleAEERSAQAALRAEKEAEK 1323
Cdd:NF041483 116 RLQAELHTEAVQRRQQLDQELAERRQTVEShvnENVAWAEqlRARTESQARRLLDESR----AEAEQALAAARAEAERLA 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1324 EAALLQLREQLEGERKEAVAGLeKKHSAELEQLCSSLEAKHQEVIS-SLQKKIEGAQQKEEA--QLQESLGWAEQRAhqk 1400
Cdd:NF041483 192 EEARQRLGSEAESARAEAEAIL-RRARKDAERLLNAASTQAQEATDhAEQLRSSTAAESDQArrQAAELSRAAEQRM--- 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1401 vhqvteyeQELSSLLRDKRQEVerehERKMDKMKEEHWQEMADARERYEAEER---KQRADLLGHLTGELERLRRAHERE 1477
Cdd:NF041483 268 --------QEAEEALREARAEA----EKVVAEAKEAAAKQLASAESANEQRTRtakEEIARLVGEATKEAEALKAEAEQA 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1478 LESMRQEQDQQLEDLRRRHR-----DHERKL----QDLEVELSSRTKDVKARLAQLNVQEENIRKEkqllldAQRQAALE 1548
Cdd:NF041483 336 LADARAEAEKLVAEAAEKARtvaaeDTAAQLakaaRTAEEVLTKASEDAKATTRAAAEEAERIRRE------AEAEADRL 409
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 568959095 1549 REEATATHQHLEEAKKEHThlletkqqlrrtiDDLRVRRVELESQVDLLQAQSQRLQ 1605
Cdd:NF041483 410 RGEAADQAEQLKGAAKDDT-------------KEYRAKTVELQEEARRLRGEAEQLR 453
|
|
| PspA_IM30 |
pfam04012 |
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent ... |
1248-1391 |
7.82e-05 |
|
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.
Pssm-ID: 461130 [Multi-domain] Cd Length: 215 Bit Score: 46.21 E-value: 7.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1248 LRAQVQSRTEAFENQIRTEQQAalqrLREEAETLQKAERASLEQKSR-----RALEQLREQLEAEERSAQAALRaEKEAE 1322
Cdd:pfam04012 9 VRANIHEGLDKAEDPEKMLEQA----IRDMQSELVKARQALAQTIARqkqleRRLEQQTEQAKKLEEKAQAALT-KGNEE 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568959095 1323 KEAALLQLREQLEG--ERKEAVAGLEKKHSAELEQLCSSLEAKHQEVISSLQK-KIEGAQQKEEAQLQESLG 1391
Cdd:pfam04012 84 LAREALAEKKSLEKqaEALETQLAQQRSAVEQLRKQLAALETKIQQLKAKKNLlKARLKAAKAQEAVQTSLG 155
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1253-1397 |
8.26e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.47 E-value: 8.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1253 QSRTEAFENQIRTEQQAALQRLREEAETLQKAERASLEQKSRRaLEQLREQLEaeERSAQAALRAEKEAEKEAALLQLRE 1332
Cdd:PRK12704 48 KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKR-LLQKEENLD--RKLELLEKREEELEKKEKELEQKQQ 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568959095 1333 QLEgERKEAVAGLEKKHSAELEQLcSSL---EAKhQEVISSLQKKIEGAQQK------EEAQLQeslgwAEQRA 1397
Cdd:PRK12704 125 ELE-KKEEELEELIEEQLQELERI-SGLtaeEAK-EILLEKVEEEARHEAAVlikeieEEAKEE-----ADKKA 190
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1394-1783 |
8.27e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 8.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1394 EQRAHQKVHQVTEYEQELSSLLRDK--RQEVEREHERKMDKMKEEHWQEMADARERYEaEERKQRADLLGHLTG------ 1465
Cdd:TIGR00606 201 KVQEHQMELKYLKQYKEKACEIRDQitSKEAQLESSREIVKSYENELDPLKNRLKEIE-HNLSKIMKLDNEIKAlksrkk 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1466 ELERLRRAHERELESMRQEQDQQLEDLRRRH----RDHERKLQDLEVELSSRTKDVK-------------ARLA-QLNVQ 1527
Cdd:TIGR00606 280 QMEKDNSELELKMEKVFQGTDEQLNDLYHNHqrtvREKERELVDCQRELEKLNKERRllnqektellveqGRLQlQADRH 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1528 EENIRKEKQLLLDAQRQAALEREEATATHQhlEEAKKEHTHLLETKQQLRRTIDDLRVrrvELESQVDLLQAQSQRLQKH 1607
Cdd:TIGR00606 360 QEHIRARDSLIQSLATRLELDGFERGPFSE--RQIKNFHTLVIERQEDEAKTAAQLCA---DLQSKERLKQEQADEIRDE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1608 LSSLEAEVQRKQDVLKEMAAEM--------NASPHPEPGLHIED-LRKSL-DTNKNQEVSSSLSLSKEEIDLSMESVRQF 1677
Cdd:TIGR00606 435 KKGLGRTIELKKEILEKKQEELkfvikelqQLEGSSDRILELDQeLRKAErELSKAEKNSLTETLKKEVKSLQNEKADLD 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1678 LS----AEGVAVRNAKEFLVRQTRSMRRRQTalKAAQQ----HWRHELASAQEVDeDLPGTEVLGN-----------MRK 1738
Cdd:TIGR00606 515 RKlrklDQEMEQLNHHTTTRTQMEMLTKDKM--DKDEQirkiKSRHSDELTSLLG-YFPNKKQLEDwlhskskeinqTRD 591
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568959095 1739 NL---NEETRHLDEMKSAMRKGhdlLKKKEEKLIQLESSLQEEVSDED 1783
Cdd:TIGR00606 592 RLaklNKELASLEQNKNHINNE---LESKEEQLSSYEDKLFDVCGSQD 636
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
1248-1485 |
9.61e-05 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 45.59 E-value: 9.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1248 LRAQVQSRTEAFENQIRTEQQAalqrLREEAETLQKAERASLEQK-SRRALEQLREQLEAE----ERSAQAALRAEkeae 1322
Cdd:COG1842 10 IRANINALLDKAEDPEKMLDQA----IRDMEEDLVEARQALAQVIaNQKRLERQLEELEAEaekwEEKARLALEKG---- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1323 keaallqlREQLegerkeAVAGLEKKhsAELEQLCSSLEAKHQevisslqkkiegAQQKEEAQLQESLgwaeQRAHQKvh 1402
Cdd:COG1842 82 --------REDL------AREALERK--AELEAQAEALEAQLA------------QLEEQVEKLKEAL----RQLESK-- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1403 qVTEYEQELSSLL-RDKRQEVEREHERKMDKMKEEhwqEMADARERYEA--EERKQRADLLGHLTG------ELERLRRA 1473
Cdd:COG1842 128 -LEELKAKKDTLKaRAKAAKAQEKVNEALSGIDSD---DATSALERMEEkiEEMEARAEAAAELAAgdslddELAELEAD 203
|
250
....*....|....
gi 568959095 1474 H--ERELESMRQEQ 1485
Cdd:COG1842 204 SevEDELAALKAKM 217
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1395-1631 |
9.90e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.64 E-value: 9.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1395 QRAHQKVHQV----------TEYEQELSsLLRDKRQEVEREherkmdkmKEEHWQEMADARERYEAEerKQRADLLGHLT 1464
Cdd:PRK04863 813 QRLHQAFSRFigshlavafeADPEAELR-QLNRRRVELERA--------LADHESQEQQQRSQLEQA--KEGLSALNRLL 881
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1465 GELERLRR-AHERELESMRqEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKD------VKARLAQLNVQEENIRKEKQL 1537
Cdd:PRK04863 882 PRLNLLADeTLADRVEEIR-EQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDpeqfeqLKQDYQQAQQTQRDAKQQAFA 960
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1538 LLD-AQRQAALEREEATathQHLEEAKkehthllETKQQLRRTIDDLRVRRVELESQvdLLQAQSQRLQKH--LSSLEAE 1614
Cdd:PRK04863 961 LTEvVQRRAHFSYEDAA---EMLAKNS-------DLNEKLRQRLEQAEQERTRAREQ--LRQAQAQLAQYNqvLASLKSS 1028
|
250
....*....|....*..
gi 568959095 1615 VQRKQDVLKEMAAEMNA 1631
Cdd:PRK04863 1029 YDAKRQMLQELKQELQD 1045
|
|
| DUF4515 |
pfam14988 |
Domain of unknown function (DUF4515); This family of proteins is found in bacteria and ... |
1421-1617 |
1.08e-04 |
|
Domain of unknown function (DUF4515); This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 198 and 469 amino acids in length. There are two completely conserved L residues that may be functionally important.
Pssm-ID: 405647 [Multi-domain] Cd Length: 206 Bit Score: 45.53 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1421 EVEREHERKMDKMKEEHWQEMADAREryEAEERKQR-ADLLGHLTGELERLRRAHERELESMRQEQdQQLEDLRRRHRDH 1499
Cdd:pfam14988 7 EYLAKKTEEKQKKIEKLWNQYVQECE--EIERRRQElASRYTQQTAELQTQLLQKEKEQASLKKEL-QALRPFAKLKESQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1500 ERKLQDLEVELSSRTKDVKARLAQLNVQeenIRKEKQLLldaQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRRT 1579
Cdd:pfam14988 84 EREIQDLEEEKEKVRAETAEKDREAHLQ---FLKEKALL---EKQLQELRILELGERATRELKRKAQALKLAAKQALSEF 157
|
170 180 190
....*....|....*....|....*....|....*...
gi 568959095 1580 IDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQR 1617
Cdd:pfam14988 158 CRSIKRENRQLQKELLQLIQETQALEAIKSKLENRKQR 195
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1330-1793 |
1.14e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1330 LREQLEGERKEAVAGLEKKHSAELEQLcSSLEAKhqevISSLQKKIEGAQQKEEAQLQEslgwaeQRAHQKvhqvtEYEQ 1409
Cdd:pfam12128 227 IRDIQAIAGIMKIRPEFTKLQQEFNTL-ESAELR----LSHLHFGYKSDETLIASRQEE------RQETSA-----ELNQ 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1410 ELSSLLRDKRQEVEREHER----KMDKMKEEHWQEMADAR----ERYEAEERKQRADLLGHLTGELERLRRAHERELESm 1481
Cdd:pfam12128 291 LLRTLDDQWKEKRDELNGElsaaDAAVAKDRSELEALEDQhgafLDADIETAAADQEQLPSWQSELENLEERLKALTGK- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1482 rqeqdqqledlrrrHRDHERKLQDLEVELSSRTKDVkarLAQLNVQEENIRKEKQLLLDAQRqAALEREEATATHQH--- 1558
Cdd:pfam12128 370 --------------HQDVTAKYNRRRSKIKEQNNRD---IAGIKDKLAKIREARDRQLAVAE-DDLQALESELREQLeag 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1559 --------------LEEAK---KEHTHLLETKQQLRRTIDDLRVRRVELES--------QVDLLQAQSQRLQ--KHLSSL 1611
Cdd:pfam12128 432 klefneeeyrlksrLGELKlrlNQATATPELLLQLENFDERIERAREEQEAanaeverlQSELRQARKRRDQasEALRQA 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1612 EAEVQRKQDVLKEMAAEMNasphPEPGLHIEDLRKSLDTNKNQ--EVSSSLSLSKEEID--LSMESVRQFLSAEGVAVR- 1686
Cdd:pfam12128 512 SRRLEERQSALDELELQLF----PQAGTLLHFLRKEAPDWEQSigKVISPELLHRTDLDpeVWDGSVGGELNLYGVKLDl 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1687 ---NAKEFlVRQTRSMRRRQTALKAAQQHwRHELASAQEvdedlpgtEVLGNMRKNLNEETRHLDEMKSAMRKGHDLLKK 1763
Cdd:pfam12128 588 kriDVPEW-AASEEELRERLDKAEEALQS-AREKQAAAE--------EQLVQANGELEKASREETFARTALKNARLDLRR 657
|
490 500 510
....*....|....*....|....*....|
gi 568959095 1764 KEEKLIQLESSLQEEVSDEDTLKGSSIKKV 1793
Cdd:pfam12128 658 LFDEKQSEKDKKNKALAERKDSANERLNSL 687
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
1418-1766 |
1.16e-04 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 46.95 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1418 KRQEVEREH--ERKMDKMKEEhwqeMADARERYE-AEERK-QRADLLGHLTGELERLRRAHER-ELESMRQEQDQQLEDL 1492
Cdd:pfam05701 30 RIQTVERRKlvELELEKVQEE----IPEYKKQSEaAEAAKaQVLEELESTKRLIEELKLNLERaQTEEAQAKQDSELAKL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1493 RRRhrDHERKLQDLE-VELSSRTKDVKAR----LAQLN-VQEE--NIRKEKQLLLdAQRQAALER-EEATATHQHLEEAK 1563
Cdd:pfam05701 106 RVE--EMEQGIADEAsVAAKAQLEVAKARhaaaVAELKsVKEEleSLRKEYASLV-SERDIAIKRaEEAVSASKEIEKTV 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1564 KEHT-HLLETKQQL---RRTIDDLRVRRV---------ELESQVDLLQAQS--QRLQKHLSS---LEAEVQRKQDVLKEM 1625
Cdd:pfam05701 183 EELTiELIATKESLesaHAAHLEAEEHRIgaalareqdKLNWEKELKQAEEelQRLNQQLLSakdLKSKLETASALLLDL 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1626 AAEMNA---SPHPEPGLHIEDLRKSldTNKNQEVSSSLSLSKEEIDLSMESVRQFLSAEGVAVRNAKEFLVRQTR---SM 1699
Cdd:pfam05701 263 KAELAAymeSKLKEEADGEGNEKKT--STSIQAALASAKKELEEVKANIEKAKDEVNCLRVAAASLRSELEKEKAelaSL 340
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568959095 1700 RRRQT-------ALKAAQQHWRHELASAQEVDEDlpGTEVLGNMRKNLNEETRHLDEMKSAMRKGHDLLKK-KEE 1766
Cdd:pfam05701 341 RQREGmasiavsSLEAELNRTKSEIALVQAKEKE--AREKMVELPKQLQQAAQEAEEAKSLAQAAREELRKaKEE 413
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1266-1557 |
1.40e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.12 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1266 EQQAALQRLREEAETLQKAERASLEQkSRRALEQLREQLEAEERS------------AQAALRAEKEAEKEAALLQLREQ 1333
Cdd:pfam10174 447 EKERIIERLKEQREREDRERLEELES-LKKENKDLKEKVSALQPEltekesslidlkEHASSLASSGLKKDSKLKSLEIA 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1334 LEGERKEAVA---GLEKKHSAELEQLCS---SLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVHQVTEY 1407
Cdd:pfam10174 526 VEQKKEECSKlenQLKKAHNAEEAVRTNpeiNDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAEL 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1408 EQELSSLLRDKRQEVeREHERKMDKMKEEHWQEMADARERYEAEERKQRADLLGHLTGELERLRR---AHERELESMRQ- 1483
Cdd:pfam10174 606 ESLTLRQMKEQNKKV-ANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQeldATKARLSSTQQs 684
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1484 --EQDQQLEDLRrrhrdHERKLQdLEVELSSRTkdvKARLAQLNVQEENI--------RKEKqlllDAQRQAALEREEAT 1553
Cdd:pfam10174 685 laEKDGHLTNLR-----AERRKQ-LEEILEMKQ---EALLAAISEKDANIallelsssKKKK----TQEEVMALKREKDR 751
|
....
gi 568959095 1554 ATHQ 1557
Cdd:pfam10174 752 LVHQ 755
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1278-1562 |
1.63e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1278 AETLQKAERASLEQKSRRALEQLREQL-EAEERSAQAALRaekeaekeaaLLQLREQlegerkEAVAGLEKKHSAELEQL 1356
Cdd:COG3206 158 AEAYLEQNLELRREEARKALEFLEEQLpELRKELEEAEAA----------LEEFRQK------NGLVDLSEEAKLLLQQL 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1357 cSSLEAKhqevISSLQKKIEGAQQKEEaQLQESLGWAEQRAhQKVHQVTEYEQelsslLRDKRQEVEREHERKMDKMKEE 1436
Cdd:COG3206 222 -SELESQ----LAEARAELAEAEARLA-ALRAQLGSGPDAL-PELLQSPVIQQ-----LRAQLAELEAELAELSARYTPN 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1437 HwQEMADAREryeaeerkQRADLLGHLTGELERLRRAHERELESMRQeQDQQLEDLRRRHRDHERKLQDLEVELSSRTKD 1516
Cdd:COG3206 290 H-PDVIALRA--------QIAALRAQLQQEAQRILASLEAELEALQA-REASLQAQLAQLEARLAELPELEAELRRLERE 359
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568959095 1517 VKARLAQLnvqeenirkekQLLLDAQRQAALEREEATATHQHLEEA 1562
Cdd:COG3206 360 VEVARELY-----------ESLLQRLEEARLAEALTVGNVRVIDPA 394
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1260-1507 |
1.73e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1260 ENQIRTEQQAALQRLREEAETLQKA----ERASLEQKSRRALEQLREQLeAEERSAQAALRAEKEAEKEAALLQLREQLE 1335
Cdd:TIGR00618 607 EDMLACEQHALLRKLQPEQDLQDVRlhlqQCSQELALKLTALHALQLTL-TQERVREHALSIRVLPKELLASRQLALQKM 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1336 GERKEAVAG----LEKKHSAELEQLCSSLEAKHQ-----EVISSLQKKIEGaqqkEEAQLQESLGWAE-QRAHQKVHQVT 1405
Cdd:TIGR00618 686 QSEKEQLTYwkemLAQCQTLLRELETHIEEYDREfneieNASSSLGSDLAA----REDALNQSLKELMhQARTVLKARTE 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1406 EYEQELSSLLRDKRQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRADLLGHLTGELERLRRAHErELESMRQEQ 1485
Cdd:TIGR00618 762 AHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEE-QFLSRLEEK 840
|
250 260
....*....|....*....|..
gi 568959095 1486 DQQLEDLRRRHRDHERKLQDLE 1507
Cdd:TIGR00618 841 SATLGEITHQLLKYEECSKQLA 862
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
1260-1470 |
1.77e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 46.56 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1260 ENQIRTEQQAALQRLREEAETLQ------KAERASLEQKSRRALEQLRE-QLEAEERSAQaalraekeaekeaalLQLRE 1332
Cdd:pfam05667 326 EEELQQQREEELEELQEQLEDLEssiqelEKEIKKLESSIKQVEEELEElKEQNEELEKQ---------------YKVKK 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1333 QLEGERKEAVAGLEKkhsaeLEQLCSSleakhqevisSLQKKIEGAQQKEEaqlqeslgwaeqrahqkvHQVT---EYEQ 1409
Cdd:pfam05667 391 KTLDLLPDAEENIAK-----LQALVDA----------SAQRLVELAGQWEK------------------HRVPlieEYRA 437
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568959095 1410 elsslLRDKRQEVEREHERKMDKMKEEHwQEMADAreryeAEERKQRADLLGHLTGELERL 1470
Cdd:pfam05667 438 -----LKEAKSNKEDESQRKLEEIKELR-EKIKEV-----AEEAKQKEELYKQLVAEYERL 487
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1475-1629 |
2.01e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.31 E-value: 2.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1475 ERELESMRQEQDQQLEDlrrrhRDHERKlQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLldaqrqaalereeata 1554
Cdd:PRK12704 48 KKEAEAIKKEALLEAKE-----EIHKLR-NEFEKELRERRNELQKLEKRLLQKEENLDRKLELL---------------- 105
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568959095 1555 thqhleeaKKEHTHLLETKQQLRRTIDDLRVRRVELEsqvDLLQAQSQRLQkHLSSLEAEvQRKQDVLKEMAAEM 1629
Cdd:PRK12704 106 --------EKREEELEKKEKELEQKQQELEKKEEELE---ELIEEQLQELE-RISGLTAE-EAKEILLEKVEEEA 167
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
1209-1618 |
2.08e-04 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 45.68 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1209 QKEKSLSLLKAQLQKATAEekekeeetkireeesrrlvclraqvqsrteafENQIRTEQQAALQRLREEAETLQKAERas 1288
Cdd:pfam13868 21 NKERDAQIAEKKRIKAEEK--------------------------------EEERRLDEMMEEERERALEEEEEKEEE-- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1289 LEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKEAALLQLREQLEgERKEAVAGLEKKhsaeleqlcsslEAKHQEVI 1368
Cdd:pfam13868 67 RKEERKRYRQELEEQIEEREQKRQEEYEEKLQEREQMDEIVERIQEE-DQAEAEEKLEKQ------------RQLREEID 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1369 SSLQKKIEGAQQKEEAQLQEslgwaEQRAHQKVHQVTEYEQElsslLRDKRQEVEREHERKMDKMKEEhwQEMAdarERY 1448
Cdd:pfam13868 134 EFNEEQAEWKELEKEEEREE-----DERILEYLKEKAEREEE----REAEREEIEEEKEREIARLRAQ--QEKA---QDE 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1449 EAEERKQRADLLghltgELERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVElssrtkdvkarlaqlnVQE 1528
Cdd:pfam13868 200 KAERDELRAKLY-----QEEQERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEE----------------AER 258
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1529 EniRKEKQLLLDAQRQA-ALEREEATATHQHLEEAKKEHTHLLETKQQLRRtiddlRVRRVELESQVDLLQAQSQRLQKh 1607
Cdd:pfam13868 259 E--EEEFERMLRKQAEDeEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRA-----AEREEELEEGERLREEEAERRER- 330
|
410
....*....|.
gi 568959095 1608 lssLEAEVQRK 1618
Cdd:pfam13868 331 ---IEEERQKK 338
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
1256-1784 |
2.11e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 46.74 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1256 TEAFENQIRTEQQAAlqRLREEAETLQKAERASLEQKSRRALEQLREQLEA-----EERSAQAALRAEKEAEKEAALLQL 1330
Cdd:NF041483 695 TEAAEALAAAQEEAA--RRRREAEETLGSARAEADQERERAREQSEELLASarkrvEEAQAEAQRLVEEADRRATELVSA 772
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1331 REQLEGERKEAVAGLEKKHSAELEQLCSSLEAKHQEVISSLQK-----KIEGAQQKEEA---------QLQESLGWAEQR 1396
Cdd:NF041483 773 AEQTAQQVRDSVAGLQEQAEEEIAGLRSAAEHAAERTRTEAQEeadrvRSDAYAERERAsedanrlrrEAQEETEAAKAL 852
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1397 AHQKVHQVTEYEQELSSLLRDKRQEVEREHERKMDKMKEEHWQEMADARE---RYEAEERKQRADLLGHLTGELERLRRA 1473
Cdd:NF041483 853 AERTVSEAIAEAERLRSDASEYAQRVRTEASDTLASAEQDAARTRADAREdanRIRSDAAAQADRLIGEATSEAERLTAE 932
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1474 HERELESMRQEQDQQLEDLRRRHRDHERKLqdlevelssrtkdvkarLAQLNVQEENIRKEKQLLLDAQRQAAlEREEAT 1553
Cdd:NF041483 933 ARAEAERLRDEARAEAERVRADAAAQAEQL-----------------IAEATGEAERLRAEAAETVGSAQQHA-ERIRTE 994
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1554 AtHQHLEEAKKEHTHLL-ETKQQLRRTIDDLRV----RRVELESQVDLLQAQSQRLQKHLssleaeVQRKQDVLKEMAAE 1628
Cdd:NF041483 995 A-ERVKAEAAAEAERLRtEAREEADRTLDEARKdankRRSEAAEQADTLITEAAAEADQL------TAKAQEEALRTTTE 1067
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1629 MNAsphpepglhiedlrksldtnknQEVSSSLSLSKEEIDLSMESVRQFLSAEGVAVRNAKEFLVrqtrSMRRRQTALKA 1708
Cdd:NF041483 1068 AEA----------------------QADTMVGAARKEAERIVAEATVEGNSLVEKARTDADELLV----GARRDATAIRE 1121
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568959095 1709 AQQHWRHELASaqEVDEdlpgtevlgnmrknLNEETRH--LDEMKSAMRKGHDLLKKKEEKLIQLESSLQEEVSDEDT 1784
Cdd:NF041483 1122 RAEELRDRITG--EIEE--------------LHERARResAEQMKSAGERCDALVKAAEEQLAEAEAKAKELVSDANS 1183
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1356-1628 |
2.20e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.44 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1356 LCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGwAEQRAHQKVhqvteYEQELSSLlrDKRQEVEREHErKMDKMKE 1435
Cdd:PRK11281 20 LCLSSAFARAASNGDLPTEADVQAQLDALNKQKLLE-AEDKLVQQD-----LEQTLALL--DKIDRQKEETE-QLKQQLA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1436 EHWQEMADARERYEAEERKQRADLLghltgelERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLqdleVELSSRTK 1515
Cdd:PRK11281 91 QAPAKLRQAQAELEALKDDNDEETR-------ETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQL----VSLQTQPE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1516 DVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATHQHLEEAKKE-HTHLLETKQQLRrtidDLrvrrveLESQV 1594
Cdd:PRK11281 160 RAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDlQRKSLEGNTQLQ----DL------LQKQR 229
|
250 260 270
....*....|....*....|....*....|....
gi 568959095 1595 DLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAE 1628
Cdd:PRK11281 230 DYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQ 263
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
1423-1568 |
2.35e-04 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 44.49 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1423 EREHERKMDKMKEEHWQEMADAREryEAEERKQRADLLGHltGELERLRRAHEREL-----ESMRQEQ---------DQQ 1488
Cdd:pfam12072 22 KSIAEAKIGSAEELAKRIIEEAKK--EAETKKKEALLEAK--EEIHKLRAEAERELkerrnELQRQERrllqkeetlDRK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1489 LEDLRRRhrdhERKLQDLEVELSSRTKDVKARLAQLnvqEENIRKEKQLLldaQRQAALEREEATAthQHLEEAKKEHTH 1568
Cdd:pfam12072 98 DESLEKK----EESLEKKEKELEAQQQQLEEKEEEL---EELIEEQRQEL---ERISGLTSEEAKE--ILLDEVEEELRH 165
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1294-1614 |
2.46e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.49 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1294 RRALEQLREQLEAEersaqaalraekeaekeaallqlREQLEGERKEAVAGLEKKHSaeLEQLCSSLEAKHQEVisSLQK 1373
Cdd:PRK04863 781 RAAREKRIEQLRAE-----------------------REELAERYATLSFDVQKLQR--LHQAFSRFIGSHLAV--AFEA 833
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1374 KIEGAQQKEEAQLQEslgwaeqrAHQKVHQVTEYEQELSSLLRDKRQEVE--REHERKMDKMKEEHWQEMADA--RERYE 1449
Cdd:PRK04863 834 DPEAELRQLNRRRVE--------LERALADHESQEQQQRSQLEQAKEGLSalNRLLPRLNLLADETLADRVEEirEQLDE 905
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1450 AEERKQRADLLGHLTGELER--------------LRRAHErELESMRQEQDQQLEDL-----RRRHRDHERKLQDL--EV 1508
Cdd:PRK04863 906 AEEAKRFVQQHGNALAQLEPivsvlqsdpeqfeqLKQDYQ-QAQQTQRDAKQQAFALtevvqRRAHFSYEDAAEMLakNS 984
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1509 ELSSRtkdVKARLAQLNVQEENIRkekqlllDAQRQAaleREEATATHQHLEEAKKEHTHLLETKQQLRRTIDDL----- 1583
Cdd:PRK04863 985 DLNEK---LRQRLEQAEQERTRAR-------EQLRQA---QAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLgvpad 1051
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 568959095 1584 -------RVRRVELESQvdLLQAQSQR--LQKHLSSLEAE 1614
Cdd:PRK04863 1052 sgaeeraRARRDELHAR--LSANRSRRnqLEKQLTFCEAE 1089
|
|
| PKK |
pfam12474 |
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino ... |
1399-1506 |
2.72e-04 |
|
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00069. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase.
Pssm-ID: 463600 [Multi-domain] Cd Length: 139 Bit Score: 42.93 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1399 QKVHQVTEYEQELSSLLRDKRQEVE---REHERKMDKMKEEHWQEMADA--RERYEAEER--------KQRADLlghLTG 1465
Cdd:pfam12474 4 QKEQQKDRFEQERQQLKKRYEKELEqleRQQKQQIEKLEQRQTQELRRLpkRIRAEQKKRlkmfreslKQEKKE---LKQ 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 568959095 1466 ELERLRRAHERELESMRQEQ------DQQLEDLRRRHRDHERKLQDL 1506
Cdd:pfam12474 81 EVEKLPKFQRKEAKRQRKEEleleqkHEELEFLQAQSEALERELQQL 127
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
1439-1578 |
2.78e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 45.86 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1439 QEMADARERYEAEERKQRADLLGHLTGELERLRRAHERELESMRQEQDQQLEDLRRRHRDHER---KLQDLEVELSSRTK 1515
Cdd:PRK12705 33 KEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDAraeKLDNLENQLEEREK 112
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568959095 1516 DVKARLAQLNVQEENIRKEkqllldAQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRR 1578
Cdd:PRK12705 113 ALSARELELEELEKQLDNE------LYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEE 169
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1266-1621 |
2.99e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.10 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1266 EQQAALqrLREEAETL--QKAERASLEQKSRRALEQLREQL------------EAEERSAQAALR--AEKEAEKEAALLQ 1329
Cdd:COG3096 784 EKRLEE--LRAERDELaeQYAKASFDVQKLQRLHQAFSQFVgghlavafapdpEAELAALRQRRSelERELAQHRAQEQQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1330 LREQLEgERKEAVAGLEKKhsaeLEQLCSSLEAKHQEVISSLQKKIEGAQQKEeaqlqeslgwAEQRAHQKvhQVTEYEQ 1409
Cdd:COG3096 862 LRQQLD-QLKEQLQLLNKL----LPQANLLADETLADRLEELREELDAAQEAQ----------AFIQQHGK--ALAQLEP 924
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1410 ELSSLLRDKRQ--EVEREHERKMDKMKEEHWQ--EMADARERYEAEERKQRADLLGHLTGELERLRrAHERELESMRQEQ 1485
Cdd:COG3096 925 LVAVLQSDPEQfeQLQADYLQAKEQQRRLKQQifALSEVVQRRPHFSYEDAVGLLGENSDLNEKLR-ARLEQAEEARREA 1003
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1486 DQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKA---RLAQLNVQEENirkekqlllDAQRQAALEREEatathqhleea 1562
Cdd:COG3096 1004 REQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQEleqELEELGVQADA---------EAEERARIRRDE----------- 1063
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568959095 1563 kkehthlleTKQQLRRTiddlRVRRVELESQVDLLQAQSQRLQKHLSSLEAE--VQRKQDV 1621
Cdd:COG3096 1064 ---------LHEELSQN----RSRRSQLEKQLTRCEAEMDSLQKRLRKAERDykQEREQVV 1111
|
|
| WW |
smart00456 |
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ... |
57-87 |
3.13e-04 |
|
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Pssm-ID: 197736 [Multi-domain] Cd Length: 33 Bit Score: 39.89 E-value: 3.13e-04
10 20 30
....*....|....*....|....*....|.
gi 568959095 57 PLPKGWKPCQNITGDLYYFNFDTGQSIWDHP 87
Cdd:smart00456 1 PLPPGWEERKDPDGRPYYYNHETKETQWEKP 31
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
1257-1376 |
3.32e-04 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 44.88 E-value: 3.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1257 EAFENQIRTEQQAALQRLREEAETLQKAERASLEQKSRRA-LEQLREQLEAEERSAQAALRaekeaekeaallQLREQLE 1335
Cdd:cd16269 180 EAEAEAILQADQALTEKEKEIEAERAKAEAAEQERKLLEEqQRELEQKLEDQERSYEEHLR------------QLKEKME 247
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 568959095 1336 GERKEAVAGLEKKHSAELEQLCSSLEAKHQEVISSLQKKIE 1376
Cdd:cd16269 248 EERENLLKEQERALESKLKEQEALLEEGFKEQAELLQEEIR 288
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1198-1783 |
3.34e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 3.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1198 EEEEEvcqLYQQKEKSLSLLKAQLQKATAEEKEKEEETKIREEESRRLVCLRAQVQSRTEAFENQiRTEQQAALQRLREE 1277
Cdd:pfam02463 282 KLQEE---ELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKE-LKELEIKREAEEEE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1278 AETLQKAERASLEQKSRRALEQLREQ---LEAEERSAQAALRAEKEAEKEAALLQLREQLEGERK-----EAVAGLEKKH 1349
Cdd:pfam02463 358 EEELEKLQEKLEQLEEELLAKKKLESerlSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKeekkeELEILEEEEE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1350 SAELEQLCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVHQVTEyEQELSSLLRDKRQEVEREHERK 1429
Cdd:pfam02463 438 SIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQK-LEERSQKESKARSGLKVLLALI 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1430 MDKMKEEHWQEmADARERYEAEERKQRADLLGHLTGELERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDL--- 1506
Cdd:pfam02463 517 KDGVGGRIISA-HGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKsia 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1507 ----EVELSSRTKDVKARLAQLNVQEEN----IRKEKQLLLDAQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRR 1578
Cdd:pfam02463 596 vleiDPILNLAQLDKATLEADEDDKRAKvvegILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1579 TIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNASPHPEPGLHIEDLRKSLDTNKNQEVSS 1658
Cdd:pfam02463 676 LEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKS 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1659 SLSLSKEEIDLSMESVRQFLSAEGVAVRNAKEFLVRQTRSMRRRQTALKAAQQHWRHE---LASAQEVDEDLPGTEVLGN 1735
Cdd:pfam02463 756 RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEaelLEEEQLLIEQEEKIKEEEL 835
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 568959095 1736 MRKNLNEETRHLDEMKSAMRKghDLLKKKEEKLIQLESSLQEEVSDED 1783
Cdd:pfam02463 836 EELALELKEEQKLEKLAEEEL--ERLEEEITKEELLQELLLKEEELEE 881
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
1439-1625 |
3.60e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 45.45 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1439 QEMAdARERYEAEERKQRADLLGHLtgelerlrraherelesmrQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVK 1518
Cdd:PRK11637 54 QDIA-AKEKSVRQQQQQRASLLAQL-------------------KKQEEAISQASRKLRETQNTLNQLNKQIDELNASIA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1519 ARLAQLNVQ--------------------------EENIRKEKQL----LLDAQRQAALE-----REEATATHQHLEEAK 1563
Cdd:PRK11637 114 KLEQQQAAQerllaaqldaafrqgehtglqlilsgEESQRGERILayfgYLNQARQETIAelkqtREELAAQKAELEEKQ 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568959095 1564 KEHTHLLETKQQlrrtiddlrvrrveleSQVDLLQAQSQRlQKHLSSLEAEVQRKQDVLKEM 1625
Cdd:PRK11637 194 SQQKTLLYEQQA----------------QQQKLEQARNER-KKTLTGLESSLQKDQQQLSEL 238
|
|
| GAF |
COG2203 |
GAF domain [Signal transduction mechanisms]; |
1270-1620 |
3.82e-04 |
|
GAF domain [Signal transduction mechanisms];
Pssm-ID: 441805 [Multi-domain] Cd Length: 712 Bit Score: 45.57 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1270 ALQRLREEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKEAALLQLREQLEGERKEAVAGLEKKH 1349
Cdd:COG2203 343 AIERARLYEALEAALAALLQELALLRLLLDLELTLLRLRQLLLELLLALLLLLSLLGAELLLLLLDAADLSGLLALEGLL 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1350 SAELEQLCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSLLRDKRQEVEREHERk 1429
Cdd:COG2203 423 LLDLLLLLLLLRRILLLRVLRRLLLGDEEGLVLLLALAELELLEILELLVLLAVILLALALLAALLLLLLLLLALLALS- 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1430 mdkmkEEHWQEMADARERYEAEERKQRADLLGHLTGELERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVE 1509
Cdd:COG2203 502 -----ALAVLASLLLALLLLLLLLLLLLLLGLLAALAADLLLLAAALLEDLLILLLVLLLERELLTLVGVLLLLGLSVLL 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1510 LSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVE 1589
Cdd:COG2203 577 IELALALILALALLELLLVAVGDLLLLERDLLLLLVLLVRLLLELLVVTLELTVLVVLAAVEDSALLLRLALALASLVLL 656
|
330 340 350
....*....|....*....|....*....|.
gi 568959095 1590 LESQVDLLQAQSQRLQKHLSSLEAEVQRKQD 1620
Cdd:COG2203 657 RALLATELDLILDSSLLLGLLLLGALLLLGG 687
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1260-1617 |
3.95e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 45.82 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1260 ENQIRTEQQAAlqrlrEEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAAlraekeaEKEAALLQ-LREQLEGER 1338
Cdd:PRK10929 25 EKQITQELEQA-----KAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVI-------DNFPKLSAeLRQQLNNER 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1339 KEAVAGLEKKHSAELEQlcSSLEAKHQEVISSLQkkiegAQQKEEA--QLQESLGWAEQRAHQKVHQVTEYEQELSSLlr 1416
Cdd:PRK10929 93 DEPRSVPPNMSTDALEQ--EILQVSSQLLEKSRQ-----AQQEQDRarEISDSLSQLPQQQTEARRQLNEIERRLQTL-- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1417 DKRQEVEREHERKMDKMkeehwqemadareryEAEERKQRADLLghltgELERLRRAHERELESMR--------QEQDQQ 1488
Cdd:PRK10929 164 GTPNTPLAQAQLTALQA---------------ESAALKALVDEL-----ELAQLSANNRQELARLRselakkrsQQLDAY 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1489 LEDLR-----RRHRDHERKLQ----------DLEVELSSRTKDVKARLAQLNVQEENIrkekQLLLDAQRQAA---LERE 1550
Cdd:PRK10929 224 LQALRnqlnsQRQREAERALEstellaeqsgDLPKSIVAQFKINRELSQALNQQAQRM----DLIASQQRQAAsqtLQVR 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1551 EATATHQHLEEAKKEHTHLLET-------------KQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQR 1617
Cdd:PRK10929 300 QALNTLREQSQWLGVSNALGEAlraqvarlpempkPQQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQADGQPLTAEQNR 379
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
1256-1481 |
4.56e-04 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 44.84 E-value: 4.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1256 TEAFENQIRTEQQAALQRLREEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAALRAEKeaekeaallQLREQLE 1335
Cdd:TIGR02794 45 PGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAE---------QAAKQAE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1336 GERKEAVaglEKKHSAELEQlcssleAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVHQVteyEQElssll 1415
Cdd:TIGR02794 116 EKQKQAE---EAKAKQAAEA------KAKAEAEAERKAKEEAAKQAEEEAKAKAAAEAKKKAEEAKKKA---EAE----- 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568959095 1416 RDKRQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRADllghltgELERLRRAHERELESM 1481
Cdd:TIGR02794 179 AKAKAEAEAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAA-------AAEAERKADEAELGDI 237
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1471-1777 |
4.87e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 45.28 E-value: 4.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1471 RRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENI-------RKEKQLLLDAQR 1543
Cdd:PLN02939 36 RARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDhnrasmqRDEAIAAIDNEQ 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1544 QAALEREEATATHQhLEEakkehthLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLK 1623
Cdd:PLN02939 116 QTNSKDGEQLSDFQ-LED-------LVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1624 eMAAEMNAspHPE-PGLHIEDLRKSLDTNKNQEVSSSLSLSKEEIDLSMESVR-----QFLSAEGVAVRNAKEFLVRqtr 1697
Cdd:PLN02939 188 -LAAQEKI--HVEiLEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLlkddiQFLKAELIEVAETEERVFK--- 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1698 sMRRRQTALKAAQQHWRHELASAQE---------VDEDLPGTEVLGNMrknLNEETRHLDEMKSAMRKGHDLLKKKEEkl 1768
Cdd:PLN02939 262 -LEKERSLLDASLRELESKFIVAQEdvsklsplqYDCWWEKVENLQDL---LDRATNQVEKAALVLDQNQDLRDKVDK-- 335
|
....*....
gi 568959095 1769 iqLESSLQE 1777
Cdd:PLN02939 336 --LEASLKE 342
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1134-1625 |
5.55e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 5.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1134 KGMELEEDQRLLLEFQKEKPQ------QLEERLWREEEEKEEGEEEEKEDEEEegeeeeeeeekeeeeeeeeeeevcqly 1207
Cdd:PRK03918 198 KEKELEEVLREINEISSELPElreeleKLEKEVKELEELKEEIEELEKELESL--------------------------- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1208 qqkEKSLSLLKAQLQKATAEEKEKEEETKIREEESRRLVCLR--AQVQSRTEAFENQIRTEQQ---AALQRLREEAETLQ 1282
Cdd:PRK03918 251 ---EGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKekAEEYIKLSEFYEEYLDELReieKRLSRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1283 KaERASLEQKSRRaLEQLREQLEAEERSAQaalRAEKEAEKEAALLQLREQLEGERKEaVAGLEKKhsaELEQLCSSLEA 1362
Cdd:PRK03918 328 E-RIKELEEKEER-LEELKKKLKELEKRLE---ELEERHELYEEAKAKKEELERLKKR-LTGLTPE---KLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1363 KHQEV---ISSLQKKIeGAQQKEEAQLQ---ESLGWAEQRA---------HQKVHQVTEYEQELSSLLRDKRQ------- 1420
Cdd:PRK03918 399 AKEEIeeeISKITARI-GELKKEIKELKkaiEELKKAKGKCpvcgrelteEHRKELLEEYTAELKRIEKELKEieekerk 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1421 --------EVEREHERKMDKMKE--EHWQEMADARERYEAEERKQRADLLGHLTGELERLR---RAHERELESMrQEQDQ 1487
Cdd:PRK03918 478 lrkelrelEKVLKKESELIKLKElaEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKgeiKSLKKELEKL-EELKK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1488 QLEDLRRRHRDHERKLQDLEVELSSR----TKDVKARLAQLN------VQEENIRKEKQLLLDAQrqaALEREEATATHQ 1557
Cdd:PRK03918 557 KLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELEpfyneyLELKDAEKELEREEKEL---KKLEEELDKAFE 633
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568959095 1558 HLEEAKKEHTHLLETKQQLRRTIDD-----LRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEM 1625
Cdd:PRK03918 634 ELAETEKRLEELRKELEELEKKYSEeeyeeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
1447-1628 |
5.60e-04 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 44.94 E-value: 5.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1447 RYEAEERKQRAD------LLGHLTGELERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKAR 1520
Cdd:pfam15709 283 KYDAEESQVSIDgrssptQTFVVTGNMESEEERSEEDPSKALLEKREQEKASRDRLRAERAEMRRLEVERKRREQEEQRR 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1521 LAQlNVQEENIRKEKQLLLDAQRQAalerEEATATHQHLEEAKKEHTHLlETKQQLRRTIDDLRVRRVELESQVDLLQAQ 1600
Cdd:pfam15709 363 LQQ-EQLERAEKMREELELEQQRRF----EEIRLRKQRLEEERQRQEEE-ERKQRLQLQAAQERARQQQEEFRRKLQELQ 436
|
170 180
....*....|....*....|....*...
gi 568959095 1601 SQRLQKHLSSLEAEVQRKQDVLKEMAAE 1628
Cdd:pfam15709 437 RKKQQEEAERAEAEKQRQKELEMQLAEE 464
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
1190-1521 |
5.73e-04 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 44.52 E-value: 5.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1190 EKEEeeeeeeeeevcQLYQQKEKSLSLLKAQLQKataeekekeeetkireeesRRLVCLRAQVQSRTEAF------ENQI 1263
Cdd:pfam13868 62 EKEE-----------ERKEERKRYRQELEEQIEE-------------------REQKRQEEYEEKLQEREqmdeivERIQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1264 RTEQQAALQRLREEAETLQKAERASLEQKSRRALEqlREQLEAEERSAQAALRaekeaekeaallqLREQLEGERKEAVA 1343
Cdd:pfam13868 112 EEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELE--KEEEREEDERILEYLK-------------EKAEREEEREAERE 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1344 GLEKKHSAELEQLCSSLEA--KHQEVISSLQKKIEGAQQKEEAQLQEsLGWAEQRAHQKVHQVTEYEQELssLLRDKRQE 1421
Cdd:pfam13868 177 EIEEEKEREIARLRAQQEKaqDEKAERDELRAKLYQEEQERKERQKE-REEAEKKARQRQELQQAREEQI--ELKERRLA 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1422 VEREHERKMDKMKEEHWQEMaDARERYEAEERKQRadllghltgelerlRRAHERELESMRQEQDQQLEDLRRRHRDHER 1501
Cdd:pfam13868 254 EEAEREEEEFERMLRKQAED-EEIEQEEAEKRRMK--------------RLEHRRELEKQIEEREEQRAAEREEELEEGE 318
|
330 340
....*....|....*....|
gi 568959095 1502 KLQDLEVELSSRTKDVKARL 1521
Cdd:pfam13868 319 RLREEEAERRERIEEERQKK 338
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
1403-1565 |
5.95e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 44.48 E-value: 5.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1403 QVTEYEQE---LSSLLRDKRQEV-------EREHERKMDKMKEEHWQEMADARERYEAE-ERKQRADLlghlTGELERLR 1471
Cdd:COG2268 175 AITDLEDEnnyLDALGRRKIAEIirdariaEAEAERETEIAIAQANREAEEAELEQEREiETARIAEA----EAELAKKK 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1472 RAHERELESMRQEQDQQLEDLRrrhrdhERKLQDLE--VELSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALER 1549
Cdd:COG2268 251 AEERREAETARAEAEAAYEIAE------ANAEREVQrqLEIAEREREIELQEKEAEREEAELEADVRKPAEAEKQAAEAE 324
|
170
....*....|....*.
gi 568959095 1550 EEATATHQhLEEAKKE 1565
Cdd:COG2268 325 AEAEAEAI-RAKGLAE 339
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1509-1728 |
6.34e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 6.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1509 ELSSRTKDVKARLAQLNVQEENIRKEKQ---LLLDAqRQAALEREEATATHQHLEEAKKEHTHL-LETKQQL-RRTIDDL 1583
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREqieLLEPI-RELAERYAAARERLAELEYLRAALRLWfAQRRLELlEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1584 RVRRVELESQVDLLQAQSQRLQKHLSSLEA-------------------------EVQRKQDVLKEMAAEMnasphpepG 1638
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAqirgnggdrleqlereierlereleERERRRARLEALLAAL--------G 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1639 LHIEDLRKSLDTNKnQEVSSSLSLSKEEIDLSMESVRQFLSAEgVAVRNAKEFLVRQTRSMRRRQTALKAAQQHWRHELA 1718
Cdd:COG4913 373 LPLPASAEEFAALR-AEAAALLEALEEELEALEEALAEAEAAL-RDLRRELRELEAEIASLERRKSNIPARLLALRDALA 450
|
250
....*....|.
gi 568959095 1719 SAQEVDE-DLP 1728
Cdd:COG4913 451 EALGLDEaELP 461
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
1266-1487 |
6.70e-04 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 44.56 E-value: 6.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1266 EQQAALQRLREEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAALRaekeaekeaaLLQLREQLEGERKEAvagl 1345
Cdd:pfam15709 340 AERAEMRRLEVERKRREQEEQRRLQQEQLERAEKMREELELEQQRRFEEIR----------LRKQRLEEERQRQEE---- 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1346 EKKHSAELEQLCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESlgwAEQRAHQKVHQVTEYEQELSSLLRDKRQEVERE 1425
Cdd:pfam15709 406 EERKQRLQLQAAQERARQQQEEFRRKLQELQRKKQQEEAERAEA---EKQRQKELEMQLAEEQKRLMEMAEEERLEYQRQ 482
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568959095 1426 herkmdkmKEEhwqemADARERYEAEERKQRADllghltgelERLRRAHErelESMRQEQDQ 1487
Cdd:pfam15709 483 --------KQE-----AEEKARLEAEERRQKEE---------EAARLALE---EAMKQAQEQ 519
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1410-1628 |
7.13e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 7.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1410 ELSSLLRDKRQEVEREheRKMDKMKEEHWQEMADARERYEAEERKQRADllghltgELERLRRAHERELESMRQEQdQQL 1489
Cdd:PHA02562 167 EMDKLNKDKIRELNQQ--IQTLDMKIDHIQQQIKTYNKNIEEQRKKNGE-------NIARKQNKYDELVEEAKTIK-AEI 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1490 EDLRRRHRDHERKLQDLevelSSRTKDVKARLAQLNVQEENIRKEKQLLLDAQrqaalereEATATHQHLEEAKKEHTHL 1569
Cdd:PHA02562 237 EELTDELLNLVMDIEDP----SAALNKLNTAAAKIKSKIEQFQKVIKMYEKGG--------VCPTCTQQISEGPDRITKI 304
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568959095 1570 LETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQ----------KHLSSLEAEVQRKQDVLKEMAAE 1628
Cdd:PHA02562 305 KDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLelknkistnkQSLITLVDKAKKVKAAIEELQAE 373
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
1459-1617 |
7.58e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 44.29 E-value: 7.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1459 LLGHLTGELERLRRAHER--ELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKdvKARLAQLNVQEENIRKEKQ 1536
Cdd:pfam19220 32 LIEPIEAILRELPQAKSRllELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVA--RLAKLEAALREAEAAKEEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1537 LLLDAQRQAALEREE--ATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAE 1614
Cdd:pfam19220 110 RIELRDKTAQAEALErqLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAE 189
|
...
gi 568959095 1615 VQR 1617
Cdd:pfam19220 190 LAE 192
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
1209-1546 |
8.06e-04 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 43.87 E-value: 8.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1209 QKEKSLSLLKAQLQKATAEEKEKEEETKIREEESRR--LVCLRAQVQSRTEAFENQIRTEQQAALQRLREEAETLQKAER 1286
Cdd:pfam15558 18 KEEQRMRELQQQAALAWEELRRRDQKRQETLERERRllLQQSQEQWQAEKEQRKARLGREERRRADRREKQVIEKESRWR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1287 ASLEQKSRRALEQL-REQLEAEERSAQAALRAEKEAEKEAALLQlREQLEGERKEAVAGlEKKHSAELEQLCSSLEAKHQ 1365
Cdd:pfam15558 98 EQAEDQENQRQEKLeRARQEAEQRKQCQEQRLKEKEEELQALRE-QNSLQLQERLEEAC-HKRQLKEREEQKKVQENNLS 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1366 EVISSLQKKIEGAQQ--KEEAQLQESLGWAEQRAHQKVHQVTEyeqelssllrdKRQEVEREHERKMdkmkEEHWQEMAD 1443
Cdd:pfam15558 176 ELLNHQARKVLVDCQakAEELLRRLSLEQSLQRSQENYEQLVE-----------ERHRELREKAQKE----EEQFQRAKW 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1444 ARERYEaEERKQRADLLGHLTGelERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQ 1523
Cdd:pfam15558 241 RAEEKE-EERQEHKEALAELAD--RKIQQARQVAHKTVQDKAQRARELNLEREKNHHILKLKVEKEEKCHREGIKEAIKK 317
|
330 340
....*....|....*....|...
gi 568959095 1524 LNVQEENIRKEKQLLLDAQRQAA 1546
Cdd:pfam15558 318 KEQRSEQISREKEATLEEARKTA 340
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1286-1458 |
8.10e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 8.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1286 RASLEQKSRRALEQLREQLEAEERSAQAaLRAEKEAEKEAALLQLREQLEGERKEAVAGLEKkhsaeleqlcssLEAKHQ 1365
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEA-IKKEALLEAKEEIHKLRNEFEKELRERRNELQK------------LEKRLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1366 EVISSLQKKIEGAQQKEEaQLQESlgwaEQRAHQKVHQVTEYEQELSSLLRDKRQEVER------EHERKM--DKMKEEH 1437
Cdd:PRK12704 93 QKEENLDRKLELLEKREE-ELEKK----EKELEQKQQELEKKEEELEELIEEQLQELERisgltaEEAKEIllEKVEEEA 167
|
170 180
....*....|....*....|.
gi 568959095 1438 WQEMADARERYEaEERKQRAD 1458
Cdd:PRK12704 168 RHEAAVLIKEIE-EEAKEEAD 187
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
325-740 |
9.60e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.54 E-value: 9.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 325 PGGDKGQNTAPLPPSEEEPSLSlgSSDHALPARRNKLFLLESGPAEDLSWQGVPGEGGDVGRERWRRESPGLwmgqvSKL 404
Cdd:PHA03247 2601 PVDDRGDPRGPAPPSPLPPDTH--APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL-----GRA 2673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 405 INKDTPERcKETEPAAPK---DAEASAEDSPQGPSPMPPETLASEPVPKPPLGDPANEDRQHPPGSLEPLNEDGKPSTPG 481
Cdd:PHA03247 2674 AQASSPPQ-RPRRRAARPtvgSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPG 2752
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 482 TDS------------------DNSSGGGSSLASPLGSQVLGEINNFPWDLQNPQGSVPVMGPLGPGPRDVRFCPFLVPQL 543
Cdd:PHA03247 2753 GPArparppttagppapappaAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT 2832
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 544 SHISSVEEQSesedySEDQRFYQHILQMVKISRQLEGLGLPENMQEMPCKDVAGMVCSMANEPSRMSNKGDHKATRAPER 623
Cdd:PHA03247 2833 SAQPTAPPPP-----PGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER 2907
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 624 DSgllawGPELLEHPLgaVSAPAGQEATQQAQCQPSGLRQGPVQPSPDTGLGAEPSKMQLLSQVLGSPLALVQAPLWGL- 702
Cdd:PHA03247 2908 PP-----QPQAPPPPQ--PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVp 2980
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 568959095 703 --APLRGLGDAPPSALRGSQSVSLGSSADSGHLGEPTLPP 740
Cdd:PHA03247 2981 qpAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPP 3020
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1451-1628 |
1.12e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.73 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1451 EERKQRADLLghltgeleRLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDV---KARLAQLNVQ 1527
Cdd:pfam07888 38 ECLQERAELL--------QAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHeelEEKYKELSAS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1528 EENIRKEKQLLLDA-----QRQAALEREEATATHQHLEeakkEHTHLLETKQQLRRTIDDLRvrrvELESQVDLLQAQSQ 1602
Cdd:pfam07888 110 SEELSEEKDALLAQraaheARIRELEEDIKTLTQRVLE----RETELERMKERAKKAGAQRK----EEEAERKQLQAKLQ 181
|
170 180
....*....|....*....|....*.
gi 568959095 1603 RLQKHLSSLEAEVQRKQDVLKEMAAE 1628
Cdd:pfam07888 182 QTEEELRSLSKEFQELRNSLAQRDTQ 207
|
|
| ARGLU |
pfam15346 |
Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is ... |
1408-1539 |
1.17e-03 |
|
Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is required for the oestrogen-dependent expression of ESR1 target genes. It functions in cooperation with MED1. The family of proteins is found in eukaryotes.
Pssm-ID: 405931 [Multi-domain] Cd Length: 151 Bit Score: 41.58 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1408 EQELSSLLRDKRQEVEREHERKMDKMKEEHWQEMAD--ARERYEAEERKQRADllghltgELERLRRAherELESMRQEQ 1485
Cdd:pfam15346 21 AKRVEEELEKRKDEIEAEVERRVEEARKIMEKQVLEelEREREAELEEERRKE-------EEERKKRE---ELERILEEN 90
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568959095 1486 DQQLEDLRRRHRDHERKlqdlEVELSSRTKDVKARLAQLnvQEENIRKEKQLLL 1539
Cdd:pfam15346 91 NRKIEEAQRKEAEERLA----MLEEQRRMKEERQRREKE--EEEREKREQQKIL 138
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1113-1777 |
1.25e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1113 SPEVQTAEPAAPQKLFSEAILKGMELEEDQRLLLEFQKEKPQQLEERLWREEEEKEEGEEEEKEDEEEEGEEEEEEEEKE 1192
Cdd:TIGR00606 242 SYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKEREL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1193 EEEEEEEEEEvcqlyQQKEKSLSLLKAQLQkATAEEKEKEEETKIREEESRRLVCLRAQVQSRTEAFEN------QIRTE 1266
Cdd:TIGR00606 322 VDCQRELEKL-----NKERRLLNQEKTELL-VEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERgpfserQIKNF 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1267 QQAALQRLREEAETLQK--AERASLEQKSRRALEQLREQLEAEERSAQaaLRAEKEAEKEAALLQLREQLEGERKEAVAG 1344
Cdd:TIGR00606 396 HTLVIERQEDEAKTAAQlcADLQSKERLKQEQADEIRDEKKGLGRTIE--LKKEILEKKQEELKFVIKELQQLEGSSDRI 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1345 LEKKHsaELEQLCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELsSLLRDKRQEVER 1424
Cdd:TIGR00606 474 LELDQ--ELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQME-MLTKDKMDKDEQ 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1425 eherkMDKMKEEHWQEMADARERYeaEERKQRADLLGHLTGELERLR---RAHERELESMRQEQDQqledlrrrHRDHER 1501
Cdd:TIGR00606 551 -----IRKIKSRHSDELTSLLGYF--PNKKQLEDWLHSKSKEINQTRdrlAKLNKELASLEQNKNH--------INNELE 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1502 KLQDLEVELSSRTKDVKARLAqLNVQEENIRKEkqlLLDAQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRRTid 1581
Cdd:TIGR00606 616 SKEEQLSSYEDKLFDVCGSQD-EESDLERLKEE---IEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQT-- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1582 dlrvrRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEM--AAEMNASPHPEPGLHIEDLRksldtNKNQEVSSS 1659
Cdd:TIGR00606 690 -----EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlgLAPGRQSIIDLKEKEIPELR-----NKLQKVNRD 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1660 LSLSKEEIDLSMESVRQFLSAEGVAvrnakEFLVRQTRSMRRRQTALKAAQQHWRHELASAQEVDEDLPGTEVlgnmRKN 1739
Cdd:TIGR00606 760 IQRLKNDIEEQETLLGTIMPEEESA-----KVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQV----NQE 830
|
650 660 670
....*....|....*....|....*....|....*...
gi 568959095 1740 LNEETRHLDEMKSAMRKGHDLLKKKEEKLIQLESSLQE 1777
Cdd:TIGR00606 831 KQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE 868
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
1387-1785 |
1.57e-03 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 43.13 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1387 QESLGWAEQRAHQKVHQVTeyeQELSSLLRDKRQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRAD----LLGH 1462
Cdd:pfam15742 4 GEKLKYQQQEEVQQLRQNL---QRLQILCTSAEKELRYERGKNLDLKQHNSLLQEENIKIKAELKQAQQKLLdstkMCSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1463 LTGELERLR-RAHERELESMRQEQD--------QQLEDLRRRHRDHERKLQDLEVELSSrtkdvkarLAQLNVQEENIRK 1533
Cdd:pfam15742 81 LTAEWKHCQqKIRELELEVLKQAQSiksqnslqEKLAQEKSRVADAEEKILELQQKLEH--------AHKVCLTDTCILE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1534 EKQLlldaQRQAALEREEATATHQHLEEakkehthlletkQQLRRTIDDLRVRrvELESQVDLLQAQSQRLQKHLSSLEA 1613
Cdd:pfam15742 153 KKQL----EERIKEASENEAKLKQQYQE------------EQQKRKLLDQNVN--ELQQQVRSLQDKEAQLEMTNSQQQL 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1614 EVQRKQDVLKEMAAEMNASphpepglhiEDLRKSldtnkNQEVSSSLSLSKEEIDLSMESVRQFLSAEGVAVRNAKEflv 1693
Cdd:pfam15742 215 RIQQQEAQLKQLENEKRKS---------DEHLKS-----NQELSEKLSSLQQEKEALQEELQQVLKQLDVHVRKYNE--- 277
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1694 RQTrsmrRRQTALKAAQQHWRHELASAQEVDEDLpgtevlgnmrKNLNEETRHLDEMKSAMrkgHDLLKKKEEKLIQLES 1773
Cdd:pfam15742 278 KHH----HHKAKLRRAKDRLVHEVEQRDERIKQL----------ENEIGILQQQSEKEKAF---QKQVTAQNEILLLEKR 340
|
410
....*....|..
gi 568959095 1774 SLQEEVSDEDTL 1785
Cdd:pfam15742 341 KLLEQLTEQEEL 352
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
1243-1386 |
1.60e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 43.16 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1243 RRLVCLRAQVQSRTEAFENQ----IRTEQQAALQRLREEAETLQKAERASL---EQKSRRA--LEQLREQLEAEERSAQA 1313
Cdd:PRK12705 37 RILQEAQKEAEEKLEAALLEakelLLRERNQQRQEARREREELQREEERLVqkeEQLDARAekLDNLENQLEEREKALSA 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568959095 1314 alraekeaeKEAALLQLREQLEGERKEaVAGLEKKHSaeLEQLCSSLEAKHQEvisslQKKIEGAQQKEEAQL 1386
Cdd:PRK12705 117 ---------RELELEELEKQLDNELYR-VAGLTPEQA--RKLLLKLLDAELEE-----EKAQRVKKIEEEADL 172
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1446-1679 |
1.67e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.66 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1446 ERYEAEERKQRADLLghltgELERLRraheRELESMRQEQDQQLEDLRRRhrdHERKLQDLEVELSSRTKDVKARLAQln 1525
Cdd:PRK00409 523 ASLEELERELEQKAE-----EAEALL----KEAEKLKEELEEKKEKLQEE---EDKLLEEAEKEAQQAIKEAKKEADE-- 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1526 vqeenIRKEKQLLLDAQrQAALEREEATATHQHLEEAKKEhthlLETKQQLRRTIDDL-----RVRRVELESQVDLLQAQ 1600
Cdd:PRK00409 589 -----IIKELRQLQKGG-YASVKAHELIEARKRLNKANEK----KEKKKKKQKEKQEElkvgdEVKYLSLGQKGEVLSIP 658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1601 SQRlqkhlsslEAEVQrkQDVLKemaaeMNasphpepgLHIEDLRKSLDTNKNQEVSSSLSLSKE-----EIDL------ 1669
Cdd:PRK00409 659 DDK--------EAIVQ--AGIMK-----MK--------VPLSDLEKIQKPKKKKKKKPKTVKPKPrtvslELDLrgmrye 715
|
250
....*....|.
gi 568959095 1670 -SMESVRQFLS 1679
Cdd:PRK00409 716 eALERLDKYLD 726
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
1268-1424 |
1.75e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 42.80 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1268 QAALQRLREEAETLQ-KAERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEAekeaaLLQLREQLEGER-KEAVAGL 1345
Cdd:pfam00529 64 EAQLAKAQAQVARLQaELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQ-----LAQAQIDLARRRvLAPIGGI 138
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568959095 1346 EKKHSAELEQLCSSLEAKHQEVISSLQKkiegAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSLLRDKRQEVER 1424
Cdd:pfam00529 139 SRESLVTAGALVAQAQANLLATVAQLDQ----IYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLERTEIR 213
|
|
| Apolipoprotein |
pfam01442 |
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a ... |
1248-1388 |
1.91e-03 |
|
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.
Pssm-ID: 460211 [Multi-domain] Cd Length: 175 Bit Score: 41.10 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1248 LRAQVQSRTEAFENQIrteqQAALQRLREEAETLQKAERASLEQKsrraLEQLREQLEAEERSAQAALRAEKEaekeaal 1327
Cdd:pfam01442 49 VRAKLEPYLEELQAKL----GQNVEELRQRLEPYTEELRKRLNAD----AEELQEKLAPYGEELRERLEQNVD------- 113
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568959095 1328 lQLREQLEGERKEAVAGLEKKhsaeLEQLCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQE 1388
Cdd:pfam01442 114 -ALRARLAPYAEELRQKLAER----LEELKESLAPYAEEVQAQLSQRLQELREKLEPQAED 169
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1248-1533 |
1.95e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.97 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1248 LRAQVQSRTEAFENQI--RTEQQAALQRLREEAETLQKaERASLeQKSRRALEQLREQLEAEERSAQAALraekeAEKEA 1325
Cdd:COG4372 78 LEEELEELNEQLQAAQaeLAQAQEELESLQEEAEELQE-ELEEL-QKERQDLEQQRKQLEAQIAELQSEI-----AEREE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1326 ALLQLREQLEGERKEAVAGLEKKHSAELEQLCSSLEAKHQEVISSLQKKIEGAQQkEEAQLQESLGWAEQRAHQKVHQVT 1405
Cdd:COG4372 151 ELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEA-EKLIESLPRELAEELLEAKDSLEA 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1406 EYEQELSSLLRDKRQEVEREHERKMDKMKEehwqemADARERYEAEERKQRADLLGHLTGELERLRRAHERELESMRQEQ 1485
Cdd:COG4372 230 KLGLALSALLDALELEEDKEELLEEVILKE------IEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLN 303
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 568959095 1486 DQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRK 1533
Cdd:COG4372 304 LAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLL 351
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
1328-1779 |
2.03e-03 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 43.36 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1328 LQLREQLEGERKEAVAGLEKKHSAELEQLCSSLEA--KHQE--VISSLQKKIEGAQQKEeAQLQESLGWAEQRAH-QKVH 1402
Cdd:pfam15964 225 LKLLYEAKTEVLESQVKSLRKDLAESQKTCEDLKErlKHKEslVAASTSSRVGGLCLKC-AQHEAVLAQTHTNVHmQTIE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1403 QVTEYEQELSSLLRDKRQEVEREHERKMDKMKE-EHWQEMADareryEAEERKQRADL-LGHLTGELERLRRAHERELES 1480
Cdd:pfam15964 304 RLTKERDDLMSALVSVRSSLAEAQQRESSAYEQvKQAVQMTE-----EANFEKTKALIqCEQLKSELERQKERLEKELAS 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1481 -----------MRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKD-------VKARLAQLNVQEENIRKEKQLLLDAQ 1542
Cdd:pfam15964 379 qqekraqekeaLRKEMKKEREELGATMLALSQNVAQLEAQVEKVTREknslvsqLEEAQKQLASQEMDVTKVCGEMRYQL 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1543 RQAALEREEATATHQHL------------EEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLqAQSQRlQKHLSS 1610
Cdd:pfam15964 459 NQTKMKKDEAEKEHREYrtktgrqleikdQEIEKLGLELSESKQRLEQAQQDAARAREECLKLTELL-GESEH-QLHLTR 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1611 LEAEvQRKQDVLKEMAAEMNASPHPEPGLhiedlrksldTNKNQEVSSSLSLSKEEIDLSMESVRQFLSAEGVAVRNAKE 1690
Cdd:pfam15964 537 LEKE-SIQQSFSNEAKAQALQAQQREQEL----------TQKMQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEECCTLAK 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1691 FLVRQTRSMRRRQTALKAAQQHWRHELASAQEVDEDLPGTEVL-GNMRKNLNEETRHLDEMKSAMRKGHDLLKKKEEKLI 1769
Cdd:pfam15964 606 KLEEITQKSRSEVEQLSQEKEYLQDRLEKLQKRNEELEEQCVQhGRMHERMKQRLRQLDKHCQATAQQLVQLLSKQNQLF 685
|
490
....*....|
gi 568959095 1770 QLESSLQEEV 1779
Cdd:pfam15964 686 KERQNLTEEV 695
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1162-1624 |
2.26e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1162 REEEEKEEGEEEEKEDEEEEGEEEEEEEEKEEEEEEEEEEEV---------CQLYQQKEKSLSLLKAQLQKATAEEKEKE 1232
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNalqeqlqaeTELCAEAEEMRARLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1233 EETKIREEESRRLVCLRAQVQSRTEAFENQIRtEQQAALQRL------------REEAETLQKAERASLEQKSRRALEQ- 1299
Cdd:pfam01576 82 SRLEEEEERSQQLQNEKKKMQQHIQDLEEQLD-EEEAARQKLqlekvtteakikKLEEDILLLEDQNSKLSKERKLLEEr 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1300 ---LREQLEAEERSAQAALRAEKEAEKEAALLQLREQLEGERKEAVAGLEKKHSAELEQLcssleakhQEVISSLQKKIE 1376
Cdd:pfam01576 161 iseFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDL--------QEQIAELQAQIA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1377 ---GAQQKEEAQLQESLGWAEQRAHQK---VHQVTEYEQELSSLLRDkrQEVEREHERKMDKMKEEHWQEMADARERYE- 1449
Cdd:pfam01576 233 elrAQLAKKEEELQAALARLEEETAQKnnaLKKIRELEAQISELQED--LESERAARNKAEKQRRDLGEELEALKTELEd 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1450 --------AEERKQRADLLGHLTGELERLRRAHERELESMRQEQDQ-------QLEDLRRRHRDHERKLQDLEVELSSRT 1514
Cdd:pfam01576 311 tldttaaqQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQaleelteQLEQAKRNKANLEKAKQALESENAELQ 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1515 KDVKArLAQLNVQEENIRKEkqllLDAQRQAALEReeatathqhLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESqv 1594
Cdd:pfam01576 391 AELRT-LQQAKQDSEHKRKK----LEGQLQELQAR---------LSESERQRAELAEKLSKLQSELESVSSLLNEAEG-- 454
|
490 500 510
....*....|....*....|....*....|
gi 568959095 1595 dllqaQSQRLQKHLSSLEAEVQRKQDVLKE 1624
Cdd:pfam01576 455 -----KNIKLSKDVSSLESQLQDTQELLQE 479
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1125-1778 |
2.33e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1125 QKLFSEAILKGMELEEDQRLLLEFQKEKPQQLEERLWREEEEKEEGEEEEKEDEEEEGEEEEEEEEKEEEEEEEEEEEVC 1204
Cdd:pfam02463 239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1205 QLYQQKEKSLSLLKAQLQKATAEEKEKEEETKIREEESRRLVCLRAQVQSR-------------TEAFENQIRTEQQAAL 1271
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEqleeellakkkleSERLSSAAKLKEEELE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1272 QRLREEAETLQKAERAS--LEQKSRRALEQLREQLEAEER--SAQAALRAEKEAEKEAALLQLREQLEGERKEAVAGLEK 1347
Cdd:pfam02463 399 LKSEEEKEAQLLLELARqlEDLLKEEKKEELEILEEEEESieLKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQ 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1348 KHSAELEQLCSSLEAKHQE-------------VISSLQKKIEGAQQKEEAQLQESLGWAEQ---------------RAHQ 1399
Cdd:pfam02463 479 LVKLQEQLELLLSRQKLEErsqkeskarsglkVLLALIKDGVGGRIISAHGRLGDLGVAVEnykvaistavivevsATAD 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1400 KVHQVTEYEQELSSLLRDKRQE-------------------VEREHERKMDKMKEEHWQEMADARERYEAEERKQRADLL 1460
Cdd:pfam02463 559 EVEERQKLVRALTELPLGARKLrllipklklplksiavleiDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1461 GHLTGELERLRRAHER-ELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLL 1539
Cdd:pfam02463 639 ESAKAKESGLRKGVSLeEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1540 DAQRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQ--SQRLQKHLSSLEAEVQR 1617
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEreKTEKLKVEEEKEEKLKA 798
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1618 KQDVLKEMAAEMNasphpepglHIEDLRKSLDTNKNQEVSSSLSLSKEEIDLSMESVRQFLSAEGVAVRN----AKEFLV 1693
Cdd:pfam02463 799 QEEELRALEEELK---------EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLeeeiTKEELL 869
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1694 RQTRSMRRR-----------------QTALKAAQQHWRHELASAQEVDEDLPGTEVLG-NMRKNLNEETRHLDEMKSAMR 1755
Cdd:pfam02463 870 QELLLKEEEleeqklkdeleskeekeKEEKKELEEESQKLNLLEEKENEIEERIKEEAeILLKYEEEPEELLLEEADEKE 949
|
730 740
....*....|....*....|...
gi 568959095 1756 KGHDLLKKKEEKLIQLESSLQEE 1778
Cdd:pfam02463 950 KEENNKEEEEERNKRLLLAKEEL 972
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
1249-1387 |
2.37e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 42.55 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1249 RAQVQSRTEAFENQIRTE---QQAALQRLREEAETLQKAERASLEQ-KSRRALEQLREQLEAEERSAQAALRAEKEAEKE 1324
Cdd:COG2268 194 IAEIIRDARIAEAEAEREteiAIAQANREAEEAELEQEREIETARIaEAEAELAKKKAEERREAETARAEAEAAYEIAEA 273
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568959095 1325 AALLQLREQLEGERKEAVAGLEKKhSAELEQlcssleakhQEVISSLQKKIEG----AQQKEEAQLQ 1387
Cdd:COG2268 274 NAEREVQRQLEIAEREREIELQEK-EAEREE---------AELEADVRKPAEAekqaAEAEAEAEAE 330
|
|
| FliJ |
COG2882 |
Flagellar biosynthesis chaperone FliJ [Cell motility]; |
1327-1431 |
2.50e-03 |
|
Flagellar biosynthesis chaperone FliJ [Cell motility];
Pssm-ID: 442129 [Multi-domain] Cd Length: 142 Bit Score: 40.27 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1327 LLQLREQLEGERKEAVAGLEKKHSAELEQLcSSLEAKHQEVISSLQKKIEGA-------------QQKEEA--QLQESLG 1391
Cdd:COG2882 10 LLDLAEKEEDEAARELGQAQQALEQAEEQL-EQLEQYREEYEQRLQQKLQQGlsaaqlrnyqqfiARLDEAieQQQQQVA 88
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 568959095 1392 WAEQRAHQKVHQVTEYEQELSSL--LRDKRQEVEREHERKMD 1431
Cdd:COG2882 89 QAEQQVEQARQAWLEARQERKALekLKERRREEERQEENRRE 130
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1340-1478 |
3.30e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1340 EAVAGLEKKHSAELEQLCSSLEAKHQEVISSLQKKIEgAQQKEEAQLQESLGWAEQRAHQKVHQVTEYEQELSSLLRDKR 1419
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREKEHEERELTEEEEEIR-RLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEER 458
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1420 QEVEREHE-RKMDKMKEEHWQEMADARERYEaeerkqradllgHLTGELERLRRAHEREL 1478
Cdd:COG2433 459 REIRKDREiSRLDREIERLERELEEERERIE------------ELKRKLERLKELWKLEH 506
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1195-1625 |
3.30e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1195 EEEEEEEevcqlyQQKeksLSLLKAQLQKATAEEKEKEEETKIREEesrRLVCLRAQVQSRTEAFENQIRTEQQAA--LQ 1272
Cdd:pfam01576 112 LDEEEAA------RQK---LQLEKVTTEAKIKKLEEDILLLEDQNS---KLSKERKLLEERISEFTSNLAEEEEKAksLS 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1273 RLR--EEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAALraekeAEKEAALLQLREQL---EGERKEAVAGLEK 1347
Cdd:pfam01576 180 KLKnkHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQI-----AELQAQIAELRAQLakkEEELQAALARLEE 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1348 KHSAELEQLCSSLEAKHQevISSLQKKIE---GAQQKEEAQ--------------LQESLGwaEQRAHQKVHqvTEYEQE 1410
Cdd:pfam01576 255 ETAQKNNALKKIRELEAQ--ISELQEDLEserAARNKAEKQrrdlgeelealkteLEDTLD--TTAAQQELR--SKREQE 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1411 LSSLLRDKRQEVeREHERKMDKMKEEHWQEMADARERYEAEER------KQRADLLG---HLTGELERLRRAhERELESM 1481
Cdd:pfam01576 329 VTELKKALEEET-RSHEAQLQEMRQKHTQALEELTEQLEQAKRnkanleKAKQALESenaELQAELRTLQQA-KQDSEHK 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1482 RQEQDQQLEDLRRRHRDHER-------KLQDLEVELSSRT--------------KDVKARLAQLN-----VQEENIRK-- 1533
Cdd:pfam01576 407 RKKLEGQLQELQARLSESERqraelaeKLSKLQSELESVSsllneaegkniklsKDVSSLESQLQdtqelLQEETRQKln 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1534 ---------------EKQLLLDAQRQAALEREEATATHQHLEEAKKEHTHLL------ETKQQLRRTIDDLRVRRVELES 1592
Cdd:pfam01576 487 lstrlrqledernslQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGtlealeEGKKRLQRELEALTQQLEEKAA 566
|
490 500 510
....*....|....*....|....*....|...
gi 568959095 1593 QVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEM 1625
Cdd:pfam01576 567 AYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNL 599
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1559-1786 |
3.43e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 3.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1559 LEEA--------KKEhthllETKQQLRRTIDDL-RVR--RVELESQVDLLQAQSQRLQKHLsSLEAEVQRKQDVLKemaa 1627
Cdd:COG1196 161 IEEAagiskykeRKE-----EAERKLEATEENLeRLEdiLGELERQLEPLERQAEKAERYR-ELKEELKELEAELL---- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1628 emnasphpepGLHIEDLRKSLDT-----NKNQEVSSSLSLSKEEIDLSMESVRQFLSAEGVAVRNAKEFLVRQTRSMRRR 1702
Cdd:COG1196 231 ----------LLKLRELEAELEEleaelEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1703 QTALKAAQQHWRHELASAQEVDEDLP-GTEVLGNMRKNLNEETRHLDEMKSAMRKGHDLLKKKEEKLIQLESSLQEEVSD 1781
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEELAeLEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
....*
gi 568959095 1782 EDTLK 1786
Cdd:COG1196 381 LEELA 385
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
1269-1424 |
3.79e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 42.16 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1269 AALQRLREEAE-TLQKAER--ASLEQKSRRALEQLREQLEAEERSAQAALraekeaekeaaLLQLREQLEGERKEavagL 1345
Cdd:PRK00106 24 IKMKSAKEAAElTLLNAEQeaVNLRGKAERDAEHIKKTAKRESKALKKEL-----------LLEAKEEARKYREE----I 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568959095 1346 EKKHSAELEQLcSSLEAKHQEVISSLQKKIEGAQQKEEAqlqesLGWAEQRAHQKVHQVTEYEQELSSLLRDKRQEVER 1424
Cdd:PRK00106 89 EQEFKSERQEL-KQIESRLTERATSLDRKDENLSSKEKT-----LESKEQSLTDKSKHIDEREEQVEKLEEQKKAELER 161
|
|
| Apolipoprotein |
pfam01442 |
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a ... |
1329-1521 |
3.92e-03 |
|
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.
Pssm-ID: 460211 [Multi-domain] Cd Length: 175 Bit Score: 40.32 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1329 QLREQLEGERKEAVAGLEKkhsaELEQLCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQEslgwaeqrahqkvhqvteYE 1408
Cdd:pfam01442 15 ELQEQLGPVAQELVDRLEK----ETEALRERLQKDLEEVRAKLEPYLEELQAKLGQNVEE------------------LR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1409 QELSSLLRDKRQEVEREHERKMDKMKeehwQEMADARERYEAEERKQRAdllgHLTGELERLRRAHERELESMRQEQDQQ 1488
Cdd:pfam01442 73 QRLEPYTEELRKRLNADAEELQEKLA----PYGEELRERLEQNVDALRA----RLAPYAEELRQKLAERLEELKESLAPY 144
|
170 180 190
....*....|....*....|....*....|...
gi 568959095 1489 LEDLRRRHRDHerkLQDLEVELSSRTKDVKARL 1521
Cdd:pfam01442 145 AEEVQAQLSQR---LQELREKLEPQAEDLREKL 174
|
|
| AmyAc_MTSase |
cd11336 |
Alpha amylase catalytic domain found in maltooligosyl trehalose synthase (MTSase); ... |
1422-1494 |
4.07e-03 |
|
Alpha amylase catalytic domain found in maltooligosyl trehalose synthase (MTSase); Maltooligosyl trehalose synthase (MTSase) domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.
Pssm-ID: 200475 [Multi-domain] Cd Length: 660 Bit Score: 42.09 E-value: 4.07e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568959095 1422 VEREHERKMDKMkeehWQEMADARERYEAEERKQRADLL-GHLTGELERLRRAHERELESMRQEQDQQLEDLRR 1494
Cdd:cd11336 291 VDPAGEAALTRL----YRRFTGDPGDFAELVREAKRLVLdTSLAGELNRLARLLGRIAEADRRTRDFTLNALRR 360
|
|
| Nuf2_DHR10-like |
pfam18595 |
Nuf2, DHR10-like domain; This domain is found at the C-terminal region of Nuf2 proteins. This ... |
1487-1624 |
4.72e-03 |
|
Nuf2, DHR10-like domain; This domain is found at the C-terminal region of Nuf2 proteins. This domain was identified as MazG related domain also designated as Designed helical repeat protein 10 (DHR10) that actually adopts a coiled-coil structure. Nuf2 is part of the Ndc80 complex, which binds to the spindle and is required for chromosome segregation and spindle checkpoint activity.
Pssm-ID: 465814 [Multi-domain] Cd Length: 117 Bit Score: 38.72 E-value: 4.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1487 QQLEDLRRRHRDHERKLQDLEVELSSRT---KDVKARLAQLNVQEENIRKEKQllldaqrqaalEREEATATHQHLEEAK 1563
Cdd:pfam18595 2 STLAEEKEELAELERKARELQAKIDALQvveKDLRSCIKLLEEIEAELAKLEE-----------AKKKLKELRDALEEKE 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568959095 1564 KEHTHLLETKQQLRRtiddlrvrrvelesQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKE 1624
Cdd:pfam18595 71 IELRELERREERLQR--------------QLENAQEKLERLREQAEEKREAAQARLEELRE 117
|
|
| YscO |
pfam07321 |
Type III secretion protein YscO; This family contains the bacterial type III secretion protein ... |
1466-1614 |
5.10e-03 |
|
Type III secretion protein YscO; This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis.
Pssm-ID: 399954 [Multi-domain] Cd Length: 148 Bit Score: 39.69 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1466 ELERLRRAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKekqllldAQRQA 1545
Cdd:pfam07321 3 RLLRVKHLREDRAEKAVKRQEQALAAARAAHQQAQASLQDYRAWRPQEEQRLYAEIQGKLVLLKELEK-------VKQQV 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568959095 1546 ALEREEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAE 1614
Cdd:pfam07321 76 ALLRENEADLEKQVAEARQQLEAEREALRQARQALAEARRAVEKFAELVRLVQAEELRQQERQEEQELE 144
|
|
| FAN1-like |
cd22326 |
repair nuclease FAN1; This model characterizes a set of nucleases that resemble ... |
1392-1589 |
5.29e-03 |
|
repair nuclease FAN1; This model characterizes a set of nucleases that resemble Holliday-junction resolving enzymes. They belong to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411730 [Multi-domain] Cd Length: 652 Bit Score: 41.69 E-value: 5.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1392 WAEQRAHQKVHQVTEYEQELSSLLRDKRQEVEREHERKMDKMKEEhWQEMADARERYEAEERKQR--------ADLLGHL 1463
Cdd:cd22326 228 FASRDELLRYEEALELEEELDELLENKKWEDAKELLELAKRVWER-LKEEVLALRSEEDLPEFLRrftagwvyTRILSKG 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1464 TGELERLRRaHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLdAQR 1543
Cdd:cd22326 307 VEALEKLKE-YEEAVELLEALLAQRRWRRGKRGRWYDRLALILMTHLKKDSLEEALEVLIEGLADPDVRLGHRLAL-LRR 384
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568959095 1544 QAALEREEatathqhLEEAKKEHtHLLETKQQLRRTIDDLRVRRVE 1589
Cdd:cd22326 385 ALRLEKSL-------RGIPKKLK-HLFEELLLDAALLKDIKEVTIK 422
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1475-1599 |
5.35e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1475 ERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVElssrTKDVKARLAQLnvqEENIRKEKQLLLDAQRQaalEREEAta 1554
Cdd:COG2433 394 EPEAEREKEHEERELTEEEEEIRRLEEQVERLEAE----VEELEAELEEK---DERIERLERELSEARSE---ERREI-- 461
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 568959095 1555 thqhleEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQA 1599
Cdd:COG2433 462 ------RKDREISRLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
1378-1519 |
5.58e-03 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 41.93 E-value: 5.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1378 AQQKEEAQLQESLGWAEQrahQKVHQVTEYEQELSSLLR--DKRQEVEREHerkmdkmkeehwQEMADARERYEAEERKQ 1455
Cdd:PTZ00491 668 ARHQAELLEQEARGRLER---QKMHDKAKAEEQRTKLLElqAESAAVESSG------------QSRAEALAEAEARLIEA 732
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568959095 1456 RADLlghltgELERLR-RAH----ERELESMRQEQDQQLEdlrrrhrdHERKLQDLEVELSSRTKDVKA 1519
Cdd:PTZ00491 733 EAEV------EQAELRaKALrieaEAELEKLRKRQELELE--------YEQAQNELEIAKAKELADIEA 787
|
|
| MAT1 |
pfam06391 |
CDK-activating kinase assembly factor MAT1; MAT1 is an assembly/targeting factor for ... |
1425-1536 |
6.35e-03 |
|
CDK-activating kinase assembly factor MAT1; MAT1 is an assembly/targeting factor for cyclin-dependent kinase-activating kinase (CAK), which interacts with the transcription factor TFIIH. The domain found to the N-terminal side of this domain is a C3HC4 RING finger.
Pssm-ID: 461894 [Multi-domain] Cd Length: 202 Bit Score: 39.92 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1425 EHERKMDKMKEEHWQEMADARERYEAEERkqradllghltgELERLRRAHERELESMRQEQDQ-QLEDLRRRHRDHERKL 1503
Cdd:pfam06391 65 ETEKKIEQYEKENKDLILKNKMKLSQEEE------------ELEELLELEKREKEERRKEEKQeEEEEKEKKEKAKQELI 132
|
90 100 110
....*....|....*....|....*....|...
gi 568959095 1504 QDLEVElSSRTKDVKARLAQLNVQEENIRKEKQ 1536
Cdd:pfam06391 133 DELMTS-NKDAEEIIAQHKKTAKKRKSERRRKL 164
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
1328-1507 |
6.50e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 40.64 E-value: 6.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1328 LQLREQLEgERKEAVAGLEKKHSAELEQLCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLgwAEQRahqkvhqvtey 1407
Cdd:cd16269 148 LEDREKLV-EKYRQVPRKGVKAEEVLQEFLQSKEAEAEAILQADQALTEKEKEIEAERAKAEA--AEQE----------- 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1408 eqelssllRDKRQEVEREHERKMDKMKEEHWQEMADARERYEAeerkqradllghltgELERLRRAHERELESMRQEQDQ 1487
Cdd:cd16269 214 --------RKLLEEQQRELEQKLEDQERSYEEHLRQLKEKMEE---------------ERENLLKEQERALESKLKEQEA 270
|
170 180
....*....|....*....|.
gi 568959095 1488 QLEDLRRRHRD-HERKLQDLE 1507
Cdd:cd16269 271 LLEEGFKEQAElLQEEIRSLK 291
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1335-1791 |
8.98e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1335 EGERKEAVAGLEKKHSAELEQL--CSSLEA---KHQEVISSLQKKIEGAQQKEEaQLQESLGWAEQRAHQkvhqVTEYEQ 1409
Cdd:PRK01156 137 QGEMDSLISGDPAQRKKILDEIleINSLERnydKLKDVIDMLRAEISNIDYLEE-KLKSSNLELENIKKQ----IADDEK 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1410 ELSSLLRDKrQEVEREHERKMDK--MKEEHWQEMA---DARERYEAEERKQRADLlghlTGELERLRRAHERELESMRQE 1484
Cdd:PRK01156 212 SHSITLKEI-ERLSIEYNNAMDDynNLKSALNELSsleDMKNRYESEIKTAESDL----SMELEKNNYYKELEERHMKII 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1485 QDQQLEDlRRRHRDHERKLQDLEvelsSRTKDVKARLAQLNVQEENIRKEKQLLLDAQRQAALEREEATATHQ--HLEEA 1562
Cdd:PRK01156 287 NDPVYKN-RNYINDYFKYKNDIE----NKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQilELEGY 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1563 KKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNASphpepglhIE 1642
Cdd:PRK01156 362 EMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQR--------IR 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1643 DLRKSldtnknqevssslslsKEEIDLSMEsvrqFLSAEGVAVRNAKEFLVRQTRSMRrrqtalkaaqQHWRHELASaqe 1722
Cdd:PRK01156 434 ALREN----------------LDELSRNME----MLNGQSVCPVCGTTLGEEKSNHII----------NHYNEKKSR--- 480
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1723 VDEDLPGTEvlgNMRKNLNEETRHLDEMKSAMRKGH-DLLKKKEEKLIQLESSLQEEVSDEDTLKGSSIK 1791
Cdd:PRK01156 481 LEEKIREIE---IEVKDIDEKIVDLKKRKEYLESEEiNKSINEYNKIESARADLEDIKIKINELKDKHDK 547
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
1276-1450 |
9.68e-03 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 41.16 E-value: 9.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1276 EEAETLQKAERasLEQKSRRALEQLR--EQLEAEErsaqaalraekeaekeaallQLREQLEgerkeavaglekkhsael 1353
Cdd:PTZ00491 664 QEAAARHQAEL--LEQEARGRLERQKmhDKAKAEE--------------------QRTKLLE------------------ 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1354 eqlcssLEAKHQEVISSLQKKIEgAQQKEEAQLQES---LGWAEQRAhqKVHQVtEYEQELSSLlrDKRQEVEREHERKM 1430
Cdd:PTZ00491 704 ------LQAESAAVESSGQSRAE-ALAEAEARLIEAeaeVEQAELRA--KALRI-EAEAELEKL--RKRQELELEYEQAQ 771
|
170 180
....*....|....*....|.
gi 568959095 1431 DKMKEEHWQEMADAR-ERYEA 1450
Cdd:PTZ00491 772 NELEIAKAKELADIEaTKFER 792
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
1261-1650 |
9.85e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 40.94 E-value: 9.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1261 NQIRTEQQAALQRLREEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQaalraekEAEKEAALLQLREQLEGERKE 1340
Cdd:PRK10246 260 SRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWERIQEQSAALAHTRQ-------QIEEVNTRLQSTMALRARIRH 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1341 AVAGLEKKHSAELEQLCSSLEAKHQEVISSlqkkiegaqqkeeaqlQESLGWAEQRAHQKV--HQVTEYEQELSSLlrdk 1418
Cdd:PRK10246 333 HAAKQSAELQAQQQSLNTWLAEHDRFRQWN----------------NELAGWRAQFSQQTSdrEQLRQWQQQLTHA---- 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1419 rqeverehERKMDKMKEEHW----QEMADARERYEAEE--RKQRADLLGHLTGELERLRRAHE--RELESMRQEQDQQLE 1490
Cdd:PRK10246 393 --------EQKLNALPAITLtltaDEVAAALAQHAEQRplRQRLVALHGQIVPQQKRLAQLQVaiQNVTQEQTQRNAALN 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1491 DLRRRHRDHERKLQDLEV--ELSSRTKDVKARLAQLNVqeenirKEKQLLLDAQRQAALEREEA---TATHQHLEEAKKE 1565
Cdd:PRK10246 465 EMRQRYKEKTQQLADVKTicEQEARIKDLEAQRAQLQA------GQPCPLCGSTSHPAVEAYQAlepGVNQSRLDALEKE 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568959095 1566 HTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSLEAEVQRKQDVLKEMAAEMNASPHPEPGLHIEDLR 1645
Cdd:PRK10246 539 VKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHERQLRLLSQR 618
|
....*
gi 568959095 1646 KSLDT 1650
Cdd:PRK10246 619 HELQG 623
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