U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

                           10        20        30
                   ....*....|....*....|....*....|....*
gi 568954136    72 DKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLL 106
Cdd:smart00451   1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Splicing factor 3a, subunit 2 [RNA processing and modification];

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568954136 165 EGKKHKKNAARVALLEQLGTSL--DLGELRGLRRTYRCTTCSVSLNSIEQYHAHLQGSKHQTNLKNK 229
Cdd:COG5246   19 EIKKNKKRRSRQLLLEAYGQDLmdDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR 85

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

                           10        20        30
                   ....*....|....*....|....*....|....*
gi 568954136    72 DKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLL 106
Cdd:smart00451   1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.

                          10        20
                  ....*....|....*....|....*
gi 568954136  146 YCGLCAAWFNNPLMAQQHYEGKKHK 170
Cdd:pfam12171   3 YCVLCDKYFKSENALQNHLKSKKHK 27

Splicing factor 3a, subunit 2 [RNA processing and modification];

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568954136 165 EGKKHKKNAARVALLEQLGTSL--DLGELRGLRRTYRCTTCSVSLNSIEQYHAHLQGSKHQTNLKNK 229
Cdd:COG5246   19 EIKKNKKRRSRQLLLEAYGQDLmdDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR 85

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

                           10        20        30
                   ....*....|....*....|....*....|.
gi 568954136    15 YCKVCSAQLISESQRVAHYESRKHASKVRLY 45
Cdd:smart00451   5 YCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

                           10        20        30
                   ....*....|....*....|....*....|....*
gi 568954136    72 DKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLL 106
Cdd:smart00451   1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.

                          10        20
                  ....*....|....*....|....*
gi 568954136  146 YCGLCAAWFNNPLMAQQHYEGKKHK 170
Cdd:pfam12171   3 YCVLCDKYFKSENALQNHLKSKKHK 27

Splicing factor 3a, subunit 2 [RNA processing and modification];

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568954136 165 EGKKHKKNAARVALLEQLGTSL--DLGELRGLRRTYRCTTCSVSLNSIEQYHAHLQGSKHQTNLKNK 229
Cdd:COG5246   19 EIKKNKKRRSRQLLLEAYGQDLmdDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR 85

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.

                          10        20
                  ....*....|....*....|....*
gi 568954136  198 YRCTTCSVSLNSIEQYHAHLQGSKH 222
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.

                          10        20
                  ....*....|....*....|....
gi 568954136   15 YCKVCSAQLISESQRVAHYESRKH 38
Cdd:pfam12171   3 YCVLCDKYFKSENALQNHLKSKKH 26