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Conserved domains on  [gi|568938674|ref|XP_006504744|]
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AP-5 complex subunit zeta-1 isoform X4 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SPG48 super family cl20688
AP-5 complex subunit, vesicle trafficking; This family would appear to be the second of the ...
 1-56 7.60e-15

AP-5 complex subunit, vesicle trafficking; This family would appear to be the second of the two larger subunits of the fifth Adaptor-Protein complex, AP-5. Adaptor protein (AP) complexes facilitate the trafficking of cargo from one membrane compartment of the cell to another by recruiting other proteins to particular types of vesicles. AP-5 is involved in trafficking proteins from endosomes towards other membranous compartments. There are genetic links between AP-5 and hereditary spastic paraplegia, a group of human genetic disorders characterized by progressive spasticity in the lower limbs.


The actual alignment was detected with superfamily member pfam14764:

Pssm-ID: 464303  Cd Length: 118  Bit Score: 70.31  E-value: 7.60e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 568938674    1 MDAEAVYGQLLRGLPSERFHSPTLAFEVIHFCTHNLALFDSHfLSLLRLSFPSLFK 56
Cdd:pfam14764  64 VDSEAVLQHFFTSVLSRLFADPMLAFETIQFCRDNLELLLAN-TSLLPQYFPNLLK 118
 
Name Accession Description Interval E-value
SPG48 pfam14764
AP-5 complex subunit, vesicle trafficking; This family would appear to be the second of the ...
 1-56 7.60e-15

AP-5 complex subunit, vesicle trafficking; This family would appear to be the second of the two larger subunits of the fifth Adaptor-Protein complex, AP-5. Adaptor protein (AP) complexes facilitate the trafficking of cargo from one membrane compartment of the cell to another by recruiting other proteins to particular types of vesicles. AP-5 is involved in trafficking proteins from endosomes towards other membranous compartments. There are genetic links between AP-5 and hereditary spastic paraplegia, a group of human genetic disorders characterized by progressive spasticity in the lower limbs.


Pssm-ID: 464303  Cd Length: 118  Bit Score: 70.31  E-value: 7.60e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 568938674    1 MDAEAVYGQLLRGLPSERFHSPTLAFEVIHFCTHNLALFDSHfLSLLRLSFPSLFK 56
Cdd:pfam14764  64 VDSEAVLQHFFTSVLSRLFADPMLAFETIQFCRDNLELLLAN-TSLLPQYFPNLLK 118
 
Name Accession Description Interval E-value
SPG48 pfam14764
AP-5 complex subunit, vesicle trafficking; This family would appear to be the second of the ...
 1-56 7.60e-15

AP-5 complex subunit, vesicle trafficking; This family would appear to be the second of the two larger subunits of the fifth Adaptor-Protein complex, AP-5. Adaptor protein (AP) complexes facilitate the trafficking of cargo from one membrane compartment of the cell to another by recruiting other proteins to particular types of vesicles. AP-5 is involved in trafficking proteins from endosomes towards other membranous compartments. There are genetic links between AP-5 and hereditary spastic paraplegia, a group of human genetic disorders characterized by progressive spasticity in the lower limbs.


Pssm-ID: 464303  Cd Length: 118  Bit Score: 70.31  E-value: 7.60e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 568938674    1 MDAEAVYGQLLRGLPSERFHSPTLAFEVIHFCTHNLALFDSHfLSLLRLSFPSLFK 56
Cdd:pfam14764  64 VDSEAVLQHFFTSVLSRLFADPMLAFETIQFCRDNLELLLAN-TSLLPQYFPNLLK 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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