|
Name |
Accession |
Description |
Interval |
E-value |
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
54-668 |
0e+00 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 614.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 54 RAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRL 133
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 134 CKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQA 213
Cdd:pfam05557 81 KKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 214 SQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLSRQ 293
Cdd:pfam05557 161 QQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLERE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 294 EKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEV 373
Cdd:pfam05557 241 EKYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQEL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 374 RQANAQLLEERKKRETHEALARRLQKRNALLTK----------------------------------------------- 406
Cdd:pfam05557 321 AQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKerdgyrailesydkeltmsnyspqllerieeaedmtqkmqahneeme 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 407 AQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSfcKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQG 486
Cdd:pfam05557 401 AQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYS--KEEVDSLRRKLETLELERQRLREQKNELEMELERRCLQG 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 487 DYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPIPADLEAASSLPSSKEVAELRKQVESAELK 566
Cdd:pfam05557 479 DYDPKKTKVLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELK 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 567 NQRLKEVFQTKIQEFRKVCYTLTGYQIDVTTESQYRLTSRYAEHQTDCLIFKATGPSGSKMQLLETEFSRSVPELIELHL 646
Cdd:pfam05557 559 NQRLKEVFQAKIQEFRDVCYMLTGYQIDITTNSQYRLTSMYAEHPDDYLLFKLSGSNGSTMQLLETPFSRTLEPLIDLHL 638
|
650 660
....*....|....*....|..
gi 568938616 647 LQQDSIPAFLSALTIELFSRQT 668
Cdd:pfam05557 639 AAQKSIPAFLSALTLELFSRQT 660
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-562 |
2.09e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 2.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARVE--------LERAASTNARNYEREVDRNQELLARIRQLQECEATAE 121
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELArleqdiarLEERRRELEERLEELEEELAELEEELEELEEELEELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 122 EKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKW 201
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 202 QEANQKIQELQASQDERAEHEQKIKDLEQKlcLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTE 281
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAE--LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 282 ELEG-----LQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEK--NNS 354
Cdd:COG1196 502 DYEGflegvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFlpLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 355 ITSSARGLEKVQQQLQDEVRQANAQLL---EERKKRETHEALARRLQKRNALLTKAQLSQALEELGVQKQRADTLEMELK 431
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLreaDARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 432 MLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLhmslnpismARQRQH 511
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL---------EEQLEA 732
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 568938616 512 EDHDRLQEECERLRGLVHALERGGPIPADLEAAsslpsSKEVAELRKQVES 562
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDLEEL-----ERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
104-416 |
1.37e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 1.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 104 QELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRL 183
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 184 ESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEheqkikdlEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLH 263
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEE--------ELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 264 EENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDqtmglnlrtpEDLSRFVVELQQ 343
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL----------EEAAEEEAELEE 456
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568938616 344 RELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKAQLSQALEEL 416
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL 529
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-584 |
1.05e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAAStnarnyerevdrnQELLARIRQLQECEATAEEKMREQLE 129
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL-------------EELELELEEAQAEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 130 RHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKI- 208
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELe 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 209 ---QELQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRmpRMERELKRLHEENTHLREMKETNGLLTEELEG 285
Cdd:COG1196 383 elaEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE--ALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 286 LQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQR--------------------- 344
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavavligveaayeaal 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 345 --ELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKAQLSQALEE------- 415
Cdd:COG1196 541 eaALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAryyvlgd 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 416 -LGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRL---KVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQS 491
Cdd:COG1196 621 tLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLtggSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 492 RTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPIPADLEAASSLPSSKEVAELRKQVESAELKNQRLK 571
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
570
....*....|...
gi 568938616 572 EVFQTKIQEFRKV 584
Cdd:COG1196 781 PVNLLAIEEYEEL 793
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
141-483 |
1.20e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 1.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 141 VSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQEL-------KEQLElqqrkwqeanQKIQELQA 213
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLeqeeeklKERLE----------ELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 214 SQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMErelkRLHEENTHLREMKETNGLLTEELEGLQRKLSRQ 293
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS----RIPEIQAELSKLEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 294 EKMQEALVDL--ELEKEKLLAKLQSWENLDQTMGLNLRTpEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQD 371
Cdd:TIGR02169 825 TLEKEYLEKEiqELQEQRIDLKEQIKSIEKEIENLNGKK-EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 372 EVRQANAQLLEERKKRETHEALARRLQKRNALLTKAQlsQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEV 451
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK--GEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEY 981
|
330 340 350
....*....|....*....|....*....|..
gi 568938616 452 DALRLKVEELEGERSRLEQEKQVLEMQMEKLT 483
Cdd:TIGR02169 982 EEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
100-483 |
1.54e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 1.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 100 VDRNQELLARIRQLQECEataeEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSElqlsamdQKVQ 179
Cdd:TIGR02168 666 AKTNSSILERRREIEELE----EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA-------LRKD 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 180 VKRLESEKQELKEQLELQQRKWQEANQKIQELQA----SQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELmrmprm 255
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEErleeAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL------ 808
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 256 ERELKRLHEENTHLRemketnglltEELEGLQRKLSRQEKMqeaLVDLELEKEKLLAKLQSWEnldqtmglnlrtpEDLS 335
Cdd:TIGR02168 809 RAELTLLNEEAANLR----------ERLESLERRIAATERR---LEDLEEQIEELSEDIESLA-------------AEIE 862
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 336 RFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAqlLEERKKRETHEALARRLQKRNALLTKAQLSQALEE 415
Cdd:TIGR02168 863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE--LESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568938616 416 LgvQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEEL-------EGERSRLEQEKQVLEMQMEKLT 483
Cdd:TIGR02168 941 L--QERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpvnlaaIEEYEELKERYDFLTAQKEDLT 1013
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
155-476 |
1.22e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 155 AREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQ-EANQKIQELQASQDERAEHEQKIKDLEQKLC 233
Cdd:TIGR02169 175 ALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 234 -LQEQDAAVVKSMKSELMRMPRMERELKRLHEEntHLREMKETNGLLTEELEGLQR----KLSRQEKMQEALVDLELEKE 308
Cdd:TIGR02169 255 kLTEEISELEKRLEEIEQLLEELNKKIKDLGEE--EQLRVKEKIGELEAEIASLERsiaeKERELEDAEERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 309 KLLAKLqswENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARG----LEKVQQQLQDEVRQANAQLLEER 384
Cdd:TIGR02169 333 KLLAEI---EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAEtrdeLKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 385 KKRETHEALARRLQKRNALLT--KAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELE 462
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAAIAgiEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
|
330
....*....|....
gi 568938616 463 GERSRLEQEKQVLE 476
Cdd:TIGR02169 490 RELAEAEAQARASE 503
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2-320 |
4.57e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 4.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 2 EDLGENTTVLSSLRSLNNFISQRM-EGTSGLDVSTSASGSLQKQYE----YHMQLEERAEQIRSKSYLIQVEREKMQMEL 76
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIENRLdELSQELSDASRKIGEIEKEIEqleqEEEKLKERLEELEEDLSSLEQEIENVKSEL 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 77 SHKRARVELERAASTNARNYEREVDRN------QELLARIRQLQECEATAEEKMRE---QLERHRLCKQNLDAVSQ---- 143
Cdd:TIGR02169 761 KELEARIEELEEDLHKLEEALNDLEARlshsriPEIQAELSKLEEEVSRIEARLREieqKLNRLTLEKEYLEKEIQelqe 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 144 QLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEH-- 221
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRls 920
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 222 --EQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEEnthLREMKETNGLLTEELEglqRKLSRQEKMQEA 299
Cdd:TIGR02169 921 elKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE---IRALEPVNMLAIQEYE---EVLKRLDELKEK 994
|
330 340
....*....|....*....|.
gi 568938616 300 LVDLELEKEKLLAKLQSWENL 320
Cdd:TIGR02169 995 RAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
293-582 |
2.71e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 2.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 293 QEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDE 372
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 373 VRQANAQLLEERkkrethEALARRLQKRNALltKAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVD 452
Cdd:TIGR02168 763 IEELEERLEEAE------EELAEAEAEIEEL--EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 453 ALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALE 532
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 568938616 533 RggpipadleaasslpsskEVAELRKQVESAELKNQRLKEVFQTKIQEFR 582
Cdd:TIGR02168 915 R------------------ELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
40-334 |
7.36e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 7.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 40 SLQKQYEYHMQLEERAEQIRSKSYLIQVEREKmqmelSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEAT 119
Cdd:TIGR02168 204 SLERQAEKAERYKELKAELRELELALLVLRLE-----ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 120 AEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQR 199
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 200 KWQEANQKIQEL-QASQDERAEHEQ---KIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKET 275
Cdd:TIGR02168 359 ELEELEAELEELeSRLEELEEQLETlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 568938616 276 NGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDL 334
Cdd:TIGR02168 439 QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
47-310 |
7.55e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 7.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 47 YHMQLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERaastnaRNYEREVDRNQELLARIRQLQECEATAEEKMRE 126
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE------RQLEELEAQLEELESKLDELAEELAELEEKLEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 127 QLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQ 206
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 207 KIQELQAsQDERAEHEQKIKDLEQklcLQEQDAAVVKsmkselmrmpRMERELKRLHEENTHLREMKETNGLLTEELEGL 286
Cdd:TIGR02168 429 KLEEAEL-KELQAELEELEEELEE---LQEELERLEE----------ALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
250 260
....*....|....*....|....
gi 568938616 287 QRKLSRQEKMQEALVDLELEKEKL 310
Cdd:TIGR02168 495 ERLQENLEGFSEGVKALLKNQSGL 518
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
277-533 |
2.49e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 277 GLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSwenldQTMGLNLRTPEdLSRFVVELQQRELTLKEKNNSIT 356
Cdd:TIGR02168 228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE-----KLEELRLEVSE-LEEEIEELQKELYALANEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 357 SSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKrnalltkaQLSQALEELGVQKQRADTLEMELKMLKAQ 436
Cdd:TIGR02168 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE--------KLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 437 TSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKL-----TLQGDYNQSRTKVLHMSLNPISMARQRQH 511
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLqqeieELLKKLEEAELKELQAELEELEEELEELQ 453
|
250 260
....*....|....*....|..
gi 568938616 512 EDHDRLQEECERLRGLVHALER 533
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQ 475
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
126-490 |
4.66e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 4.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 126 EQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQ--LSAMDQKVQVKRLESEKQELKEQLELQQRKWQE 203
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELReeLEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 204 ANQKIQELQASQDERAEHEQKIKDLEQKL--CLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTE 281
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELeeLLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 282 ELEGLQRKLSRQEKMQEALVDLELEKE--KLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSA 359
Cdd:COG4717 231 QLENELEAAALEERLKEARLLLLIAAAllALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 360 RGLEKVQQQLQDEVRQAN---------------------AQLLEERKKRETHEALARRLQKRNALLTKAQLS--QALEEL 416
Cdd:COG4717 311 PALEELEEEELEELLAALglppdlspeellelldrieelQELLREAEELEEELQLEELEQEIAALLAEAGVEdeEELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 417 GVQKQRADTLEMELKMLKAQ---------TSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGD 487
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQleellgeleELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
...
gi 568938616 488 YNQ 490
Cdd:COG4717 471 LAE 473
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
362-564 |
8.26e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 8.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 362 LEKVQQQLQDEVRQANAqLLEERKKRETHEALARRLQKRNALLTKAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAE 441
Cdd:COG4913 237 LERAHEALEDAREQIEL-LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 442 SSFSFCKEEVDALRLKVEELEGER-SRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEE 520
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568938616 521 CERLRGLVHALErggpipADLEAASSlPSSKEVAELRKQVESAE 564
Cdd:COG4913 396 LEEELEALEEAL------AEAEAALR-DLRRELRELEAEIASLE 432
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
141-482 |
1.88e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 141 VSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELkEQLELQQRKWQEANQKIQE-LQASQDERA 219
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI-EELEKELESLEGSKRKLEEkIRELEERIE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 220 EHEQKIKDLEQKlclqeqdAAVVKSMKSELMRMPRMERELKRLHEEnthLREMKETNGLLTEELEGLQRKLSRQEKMQEA 299
Cdd:PRK03918 270 ELKKEIEELEEK-------VKELKELKEKAEEYIKLSEFYEEYLDE---LREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 300 LVDLELEKEKLLAKL-------QSWENLDQTMG--------LNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEK 364
Cdd:PRK03918 340 LEELKKKLKELEKRLeeleerhELYEEAKAKKEelerlkkrLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKK 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 365 VQQQLQD---EVRQA-------NAQLLEERKKR--ETHEALARRLQKRNALLTKA--QLSQALEELGVQKQRADTLEMEL 430
Cdd:PRK03918 420 EIKELKKaieELKKAkgkcpvcGRELTEEHRKEllEEYTAELKRIEKELKEIEEKerKLRKELRELEKVLKKESELIKLK 499
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 568938616 431 KMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKL 482
Cdd:PRK03918 500 ELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL 551
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
169-446 |
2.58e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 2.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 169 LQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQasqDERAEHEQKIKDLEQKLCLQEQDAAvvksmkse 248
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALL---KQLAALERRIAALARRIRALEQELA-------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 249 lmrmpRMERELKRLHEENTHLRemketnglltEELEGLQRKLSRQekMQEALVDLELEKEKLLAKLQSWENLdqtmglnL 328
Cdd:COG4942 80 -----ALEAELAELEKEIAELR----------AELEAQKEELAEL--LRALYRLGRQPPLALLLSPEDFLDA-------V 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 329 RTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRnalltKAQ 408
Cdd:COG4942 136 RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKE-----LAE 210
|
250 260 270
....*....|....*....|....*....|....*...
gi 568938616 409 LSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSF 446
Cdd:COG4942 211 LAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
104-583 |
8.56e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 8.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 104 QELLARIRQLQECEATAEEKMREQleRHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQ-VKR 182
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQR--RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDrLEQ 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 183 LESEKQELKEQLELQQRKWQEANQKIQELQASQDE--------RAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELmrmpr 254
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPAsaeefaalRAEAAALLEALEEELEALEEALAEAEAALRDL----- 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 255 mERELKRLHEEnthLREMKETNGLLTEELEGLQRKLSRQEKMQEA-------LVDLELEKE------------------- 308
Cdd:COG4913 418 -RRELRELEAE---IASLERRKSNIPARLLALRDALAEALGLDEAelpfvgeLIEVRPEEErwrgaiervlggfaltllv 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 309 --KLLAKLQSWenLDQT-MGLNLRTpEDLSRFVVELQQREL---TLKEKNNSITSSARG-----------LEKV--QQQL 369
Cdd:COG4913 494 ppEHYAAALRW--VNRLhLRGRLVY-ERVRTGLPDPERPRLdpdSLAGKLDFKPHPFRAwleaelgrrfdYVCVdsPEEL 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 370 QDEVR--QANAQLLEERKKRE--THEALARRL-------QKRNALltKAQLSQALEELGVQKQRADTLEMELKMLKAQTS 438
Cdd:COG4913 571 RRHPRaiTRAGQVKGNGTRHEkdDRRRIRSRYvlgfdnrAKLAAL--EAELAELEEELAEAEERLEALEAELDALQERRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 439 SAESSFSFCKEEVD--ALRLKVEELEGERSRLEQEKQVLemqmEKLTLQGDYNQSRTKVLHMSLNPISMARQRQHEDHDR 516
Cdd:COG4913 649 ALQRLAEYSWDEIDvaSAEREIAELEAELERLDASSDDL----AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQ 724
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568938616 517 LQEECERLRGLVHALERGGPIP------ADLEAASSLPSSKEVAE-LRKQVESAELKNQRLKEVFQTKIQEFRK 583
Cdd:COG4913 725 AEEELDELQDRLEAAEDLARLElralleERFAAALGDAVERELREnLEERIDALRARLNRAEEELERAMRAFNR 798
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
40-480 |
8.93e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 8.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 40 SLQKQYEYHMQLEERAEQIRSKSYLIQVEREKMQmelSHKRARVELERA-ASTNARNYEREVDRNQELLARIRQLQECEA 118
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELLEPIRELAE---RYAAARERLAELeYLRAALRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 119 TAEEKMREQLERHRLCKQNLDAVSQQLREQE-DSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQ 197
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 198 QRKWQEANQKIQELQAS-QDERAEHEQKIKDLEQKLclqEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLRE----- 271
Cdd:COG4913 386 RAEAAALLEALEEELEAlEEALAEAEAALRDLRREL---RELEAEIASLERRKSNIPARLLALRDALAEALGLDEaelpf 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 272 ------MKETNGLLTEELEGL-----------------------QRKLSRQ------EKMQEALVDLELEKEKLLAKLQS 316
Cdd:COG4913 463 vgelieVRPEEERWRGAIERVlggfaltllvppehyaaalrwvnRLHLRGRlvyervRTGLPDPERPRLDPDSLAGKLDF 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 317 WEN-----LDQTMGLNL-----RTPEDLSRFvvelqQRELTL------------KEKNNSITS------SAR----GLEK 364
Cdd:COG4913 543 KPHpfrawLEAELGRRFdyvcvDSPEELRRH-----PRAITRagqvkgngtrheKDDRRRIRSryvlgfDNRaklaALEA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 365 VQQQLQDEVRQANAQLLEERKKRETHEALARRLQK----RNALLTKAQLSQALEELGVQKQRADTLEMELKMLKAQTSSA 440
Cdd:COG4913 618 ELAELEEELAEAEERLEALEAELDALQERREALQRlaeySWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEEL 697
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 568938616 441 ESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQME 480
Cdd:COG4913 698 EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
65-482 |
1.05e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 65 IQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEK---MREQLERHRLCKQNLDAV 141
Cdd:TIGR00618 305 IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVatsIREISCQQHTLTQHIHTL 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 142 SQQ---LREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQrkwQEANQKIQELQASQDER 218
Cdd:TIGR00618 385 QQQkttLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCA---AAITCTAQCEKLEKIHL 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 219 AEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENT-HLREMKETNGLLTEELEGLQRKLSRQEKMQ 297
Cdd:TIGR00618 462 QESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCiHPNPARQDIDNPGPLTRRMQRGEQTYAQLE 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 298 EALVDLELEKEKLLAKLQSWENLDQtmglnlrtpedlsrfvvELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVrqaN 377
Cdd:TIGR00618 542 TSEEDVYHQLTSERKQRASLKEQMQ-----------------EIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLT---E 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 378 AQLLEERKKRETHEALARRLQKRNALLTKAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLK 457
Cdd:TIGR00618 602 KLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLA 681
|
410 420
....*....|....*....|....*
gi 568938616 458 VEELEGERSRLEQEKQVLEMQMEKL 482
Cdd:TIGR00618 682 LQKMQSEKEQLTYWKEMLAQCQTLL 706
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
52-527 |
1.40e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 52 EERAEQIRSksylIQVEREKMQMELSH-KRARVELERAASTNARNYEREVDRNQELLARIrQLQECEATAEEKMREQLER 130
Cdd:PRK02224 247 EERREELET----LEAEIEDLRETIAEtEREREELAEEVRDLRERLEELEEERDDLLAEA-GLDDADAEAVEARREELED 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 131 HRlckqnlDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQE 210
Cdd:PRK02224 322 RD------EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 211 LQASQDERAEHEQKIKDLEQKLcLQEQDAAV--VKSMKSELMRMPRMERELKRLHEENTHLREMKETNGllTEELEGLQR 288
Cdd:PRK02224 396 LRERFGDAPVDLGNAEDFLEEL-REERDELRerEAELEATLRTARERVEEAEALLEAGKCPECGQPVEG--SPHVETIEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 289 KLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQ 368
Cdd:PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 369 LQDEVRQANAQLLEERKKRETHEALARRLQ----KRNALLTKAQLSQALEELGvqkQRADTLEMELKMLKAQTSSAESSF 444
Cdd:PRK02224 553 AEEKREAAAEAEEEAEEAREEVAELNSKLAelkeRIESLERIRTLLAAIADAE---DEIERLREKREALAELNDERRERL 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 445 SFCKEEVDALRLK-----VEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRqhedHDRLQE 519
Cdd:PRK02224 630 AEKRERKRELEAEfdearIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRER----REALEN 705
|
....*...
gi 568938616 520 ECERLRGL 527
Cdd:PRK02224 706 RVEALEAL 713
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
53-482 |
1.61e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 53 ERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMR-EQLERH 131
Cdd:PTZ00121 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKaDEAKKK 1439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 132 RLCKQNLDAV---SQQLREQEDSLASAREmisslKGRVSELQLSAmDQKVQVKRLESEKQELKEQLElQQRKWQEANQKI 208
Cdd:PTZ00121 1440 AEEAKKADEAkkkAEEAKKAEEAKKKAEE-----AKKADEAKKKA-EEAKKADEAKKKAEEAKKKAD-EAKKAAEAKKKA 1512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 209 QELQASQDERAEHEqkIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMER-ELKRLHEENTHLREMKETNGLLTEELEGLQ 287
Cdd:PTZ00121 1513 DEAKKAEEAKKADE--AKKAEEAKKADEAKKAEEKKKADELKKAEELKKaEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 288 rklsrqEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQ 367
Cdd:PTZ00121 1591 ------EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 368 QLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSfsfc 447
Cdd:PTZ00121 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE---- 1740
|
410 420 430
....*....|....*....|....*....|....*
gi 568938616 448 KEEVDALRLKVEelEGERSRLEQEKQVLEMQMEKL 482
Cdd:PTZ00121 1741 EDKKKAEEAKKD--EEEKKKIAHLKKEEEKKAEEI 1773
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
159-482 |
1.80e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.09 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 159 ISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQasqDERAEHEQKIKDLEQklclqEQD 238
Cdd:TIGR04523 234 IEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELE---KQLNQLKSEISDLNN-----QKE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 239 AAVVKSMKSELMRMPRMERELK-RLHEENTHLREMKETNGLLTEELEGLQ-RKLSRQEKMQEALVDLELEKEKLLAKLQS 316
Cdd:TIGR04523 306 QDWNKELKSELKNQEKKLEEIQnQISQNNKIISQLNEQISQLKKELTNSEsENSEKQRELEEKQNEIEKLKKENQSYKQE 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 317 WENLDQTMglnlrtpEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARR 396
Cdd:TIGR04523 386 IKNLESQI-------NDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKN 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 397 L------QKRNALLTKAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQ 470
Cdd:TIGR04523 459 LdntresLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKES 538
|
330
....*....|..
gi 568938616 471 EKQVLEMQMEKL 482
Cdd:TIGR04523 539 KISDLEDELNKD 550
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
298-490 |
1.94e-05 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 47.92 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 298 EALVDLELEKEKLLAKLQSWENLDQTM----GLNLRTPEDLSRFVVELQQRELTLKEKNNSITS-------SARGLEKVQ 366
Cdd:pfam09726 395 DALVRLEQDIKKLKAELQASRQTEQELrsqiSSLTSLERSLKSELGQLRQENDLLQTKLHNAVSakqkdkqTVQQLEKRL 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 367 QQLQDEVRQANAQLLEERKKRETHEALArrlqKRNALLTKAQLSQALEELgvqKQRADTLEMELKMLKAQTSSAEssfsf 446
Cdd:pfam09726 475 KAEQEARASAEKQLAEEKKRKKEEEATA----ARAVALAAASRGECTESL---KQRKRELESEIKKLTHDIKLKE----- 542
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568938616 447 ckEEVDALRLKVEELegeRSRLEQEKQVlEMQMEKLTLQGDYNQ 490
Cdd:pfam09726 543 --EQIRELEIKVQEL---RKYKESEKDT-EVLMSALSAMQDKNQ 580
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
151-386 |
2.40e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 151 SLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQAsqdERAEHEQKIKDLEQ 230
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ---ELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 231 KLCLQEQDAAVVKSMKSELM----RMPRMERELKRLHEEN-----THLREMKETNGLLTEELEGLQRKLSRQEKMQEALV 301
Cdd:COG4942 91 EIAELRAELEAQKEELAELLralyRLGRQPPLALLLSPEDfldavRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 302 DLELEKEKLLAKLQswenldqtmglnlRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLL 381
Cdd:COG4942 171 AERAELEALLAELE-------------EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
....*
gi 568938616 382 EERKK 386
Cdd:COG4942 238 AAAER 242
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
99-482 |
4.14e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.04 E-value: 4.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 99 EVDRNQELLARIRQlqECEATAEEKM------REQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLS 172
Cdd:pfam15921 427 EVQRLEALLKAMKS--ECQGQMERQMaaiqgkNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 173 AMDQKVQVKRLESEKQELKEQLELqqrkwqeanqKIQELQASQDErAEHEQKIKDLEQKLCLQ-EQDAAVVKSMKSELMR 251
Cdd:pfam15921 505 LQEKERAIEATNAEITKLRSRVDL----------KLQELQHLKNE-GDHLRNVQTECEALKLQmAEKDKVIEILRQQIEN 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 252 MPRMERELKR----LHEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALV-DLELEKEKLLaklqswenldQTMGL 326
Cdd:pfam15921 574 MTQLVGQHGRtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVsDLELEKVKLV----------NAGSE 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 327 NLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLleerkKRETHEALARRLQKRNAL--L 404
Cdd:pfam15921 644 RLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL-----KMQLKSAQSELEQTRNTLksM 718
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 405 TKAQLSQALEELGVQKQ------RADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQ 478
Cdd:pfam15921 719 EGSDGHAMKVAMGMQKQitakrgQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ 798
|
....
gi 568938616 479 MEKL 482
Cdd:pfam15921 799 ERRL 802
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
40-483 |
4.65e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 4.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 40 SLQKQYEYHMQLEERAEQIRSKSYLIQVEREKMQMELSHKRARveLERAASTNARNYEREvDRNQELLARIRQLQECEAT 119
Cdd:PRK03918 287 ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER--IKELEEKEERLEELK-KKLKELEKRLEELEERHEL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 120 AEEKMR--EQLERH--RLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLES---------- 185
Cdd:PRK03918 364 YEEAKAkkEELERLkkRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgr 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 186 -----EKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMrmprmERELK 260
Cdd:PRK03918 444 elteeHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLK-----KYNLE 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 261 RLHEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQswENLDQTMGLNLRTPEDLSRFVVE 340
Cdd:PRK03918 519 ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA--ELLKELEELGFESVEELEERLKE 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 341 LQ---QRELTLKeknnSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKAQLSQALEELg 417
Cdd:PRK03918 597 LEpfyNEYLELK----DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLEL- 671
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568938616 418 vqkqradtlEMELKMLKAQTSSAESSfsfcKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLT 483
Cdd:PRK03918 672 ---------SRELAGLRAELEELEKR----REEIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
54-583 |
5.07e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 5.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 54 RAEQIRSKSYLIQVEREKMQMELShkraRVELERAASTNARNYEREvdrnqellariRQLQECEATAEEKMREQLERHRL 133
Cdd:PTZ00121 1207 KAEEERKAEEARKAEDAKKAEAVK----KAEEAKKDAEEAKKAEEE-----------RNNEEIRKFEEARMAHFARRQAA 1271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 134 CKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAmDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQ---- 209
Cdd:PTZ00121 1272 IKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKA-EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEaaka 1350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 210 ELQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELmrmpRMERELKRLHEENTHLREMKETNGLLTEELEGLQRK 289
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK----KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 290 LSRQEKMQEALVDLELEKEKLLAKLQSWENldqtmglnlRTPEDLSRFVVELQQRElTLKEKnnsiTSSARGLEKVQQQL 369
Cdd:PTZ00121 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEA---------KKAEEAKKKAEEAKKAD-EAKKK----AEEAKKADEAKKKA 1492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 370 QDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKAQLSQALEEL--GVQKQRADTLEMELKMLKAQTSSAESSFSFC 447
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAkkAEEKKKADELKKAEELKKAEEKKKAEEAKKA 1572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 448 KEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGL 527
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 568938616 528 VHAlERGGPIPADLEAASSLPSSKEVAELRKQVESAELKNQRL--KEVFQTKIQEFRK 583
Cdd:PTZ00121 1653 KKA-EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALkkEAEEAKKAEELKK 1709
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
85-496 |
1.21e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 85 LERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISslkg 164
Cdd:PRK04863 263 ITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN---- 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 165 rvseLQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQAsQDERAEHE-----------QKIKDLEQKLC 233
Cdd:PRK04863 339 ----LVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEA-RAEAAEEEvdelksqladyQQALDVQQTRA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 234 LQEQDA-AVVKSMKSELMRMPRMERELKRLHEEnthLREMKETnglLTEELEGLQRKLSrqekMQEALVDLELEKEKLLA 312
Cdd:PRK04863 414 IQYQQAvQALERAKQLCGLPDLTADNAEDWLEE---FQAKEQE---ATEELLSLEQKLS----VAQAAHSQFEQAYQLVR 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 313 KL-------QSWENLDQTmglnLRTPEDLSRFVVELQQRELTLKEKNNSITSSARglekVQQQLQDEVRQANAQLLEERK 385
Cdd:PRK04863 484 KIagevsrsEAWDVAREL----LRRLREQRHLAEQLQQLRMRLSELEQRLRQQQR----AERLLAEFCKRLGKNLDDEDE 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 386 KRETHEALARRL-----QKRNALLTKAQLSQALEELGVQKQRADTLEME-------LKMLKAQTSSAESSFSFCKEEVDA 453
Cdd:PRK04863 556 LEQLQEELEARLeslseSVSEARERRMALRQQLEQLQARIQRLAARAPAwlaaqdaLARLREQSGEEFEDSQDVTEYMQQ 635
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 568938616 454 LRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVL 496
Cdd:PRK04863 636 LLERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNAL 678
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
141-483 |
1.43e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 141 VSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQ----EANQKIQELQASQD 216
Cdd:TIGR04523 312 LKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEklkkENQSYKQEIKNLES 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 217 ERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELmrmprmERELKRLHEENT----HLREMKETNGLLTEELEGLQRKLSR 292
Cdd:TIGR04523 392 QINDLESKIQNQEKLNQQKDEQIKKLQQEKELL------EKEIERLKETIIknnsEIKDLTNQDSVKELIIKNLDNTRES 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 293 QEKMQEALvDLELEKEKllaklQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDE 372
Cdd:TIGR04523 466 LETQLKVL-SRSINKIK-----QNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESK 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 373 VRQANAQL--LEERKKRETHEALARRLQKRNALLTKAQ--LSQALEELgvqKQRADTLEMELKMLKAQTSSAESSfsfck 448
Cdd:TIGR04523 540 ISDLEDELnkDDFELKKENLEKEIDEKNKEIEELKQTQksLKKKQEEK---QELIDQKEKEKKDLIKEIEEKEKK----- 611
|
330 340 350
....*....|....*....|....*....|....*
gi 568938616 449 eeVDALRLKVEELEGERSRLEQEKQVLEMQMEKLT 483
Cdd:TIGR04523 612 --ISSLEKELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
113-394 |
1.53e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 113 LQECEATAEEKMREQLERHRlckqnlDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKE 192
Cdd:pfam12128 587 LKRIDVPEWAASEEELRERL------DKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFD 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 193 QLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDaavvksmksELMRMPRMERELKRLHEENthlrEM 272
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQK---------EQKREARTEKQAYWQVVEG----AL 727
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 273 KETNGLLTEELEGLQRKLSRQEK-----MQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQ----Q 343
Cdd:pfam12128 728 DAQLALLKAAIAARRSGAKAELKaletwYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQetwlQ 807
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 568938616 344 RELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALA 394
Cdd:pfam12128 808 RRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRL 858
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
50-237 |
2.10e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 50 QLEERAEQIRSKSYLIQVEREKMQmELSHKRARVELERAASTNARNYEREvdRNQELLARIRQLQECEATAEEKMREQLE 129
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELA-EAEAEIEELEAQIEQLKEELKALRE--ALDELRAELTLLNEEAANLRERLESLER 831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 130 RHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQ 209
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
170 180
....*....|....*....|....*...
gi 568938616 210 ELQASQDERAEHEQKIKDLEQKLCLQEQ 237
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLEVRID 939
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
88-354 |
2.72e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 88 AASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRlckQNLDAVSQQLREQEDSLASAREMISSLKGRVS 167
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE---RRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 168 ELQlsamdqkvqvKRLESEKQELKEQLELQQRKwqeANQKIQELQASQDERAEHEQKIKDLEQklcLQEQDAAVVKSMKS 247
Cdd:COG4942 94 ELR----------AELEAQKEELAELLRALYRL---GRQPPLALLLSPEDFLDAVRRLQYLKY---LAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 248 ElmrmprmerelkrlheenthLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLN 327
Cdd:COG4942 158 D--------------------LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAE 217
|
250 260
....*....|....*....|....*...
gi 568938616 328 LRTPE-DLSRFVVELQQRELTLKEKNNS 354
Cdd:COG4942 218 LQQEAeELEALIARLEAEAAAAAERTPA 245
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
138-248 |
2.78e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.30 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 138 LDAVSQQLREQEDSLASAREMISSLKgrvselQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDE 217
Cdd:COG0542 406 IDSKPEELDELERRLEQLEIEKEALK------KEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEE 479
|
90 100 110
....*....|....*....|....*....|.
gi 568938616 218 RAEHEQKIKDLEQKLCLQEQDAAVVKSMKSE 248
Cdd:COG0542 480 LEQRYGKIPELEKELAELEEELAELAPLLRE 510
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
155-300 |
3.37e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.05 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 155 AREMISSLKGRVSELqlsamdqkvqVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIK-DLEQKLc 233
Cdd:PRK00409 507 AKKLIGEDKEKLNEL----------IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLeEAEKEA- 575
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568938616 234 lqeqdAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEAL 300
Cdd:PRK00409 576 -----QQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
51-532 |
4.81e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 4.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 51 LEERAEQIRSKS-----YLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLAR---------IRQLQEC 116
Cdd:pfam15921 243 VEDQLEALKSESqnkieLLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEqarnqnsmyMRQLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 117 EATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELqlsamDQKVQ--VKRLESEKQELKEQL 194
Cdd:pfam15921 323 ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNL-----DDQLQklLADLHKREKELSLEK 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 195 ELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEqklclqeqdaAVVKSMKSELmrMPRMERELKRLHEENTHLREM-- 272
Cdd:pfam15921 398 EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLE----------ALLKAMKSEC--QGQMERQMAAIQGKNESLEKVss 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 273 --------KETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKL-------LAKLQSWENLDQTMGLNLRTPEDLSRF 337
Cdd:pfam15921 466 ltaqlestKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAieatnaeITKLRSRVDLKLQELQHLKNEGDHLRN 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 338 V-VELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEerKKRETHEALARRLQKRNALLTKAQLSQALEEL 416
Cdd:pfam15921 546 VqTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVE--KAQLEKEINDRRLELQEFKILKDKKDAKIREL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 417 gvqKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVL-----------EMQMEKLTLQ 485
Cdd:pfam15921 624 ---EARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLkrnfrnkseemETTTNKLKMQ 700
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 568938616 486 GDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALE 532
Cdd:pfam15921 701 LKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQ 747
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
15-435 |
5.81e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 5.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 15 RSLNNFISQRMEGTSGLDVSTSASGSLQKQYEYHMQLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNAR 94
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 95 NYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAM 174
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 175 DQKVQVKRLESEKQELKEQLELQQRKW-QEANQKIQELQASQDERAEHEQKIKDLeQKLCLQEQDAAVVKSMKSELMRMP 253
Cdd:COG4717 224 ELEEELEQLENELEAAALEERLKEARLlLLIAAALLALLGLGGSLLSLILTIAGV-LFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 254 RMERELKRLHEENTHLREMKETNGLL----TEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKlQSWENLDQTMGLNLR 329
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALglppDLSPEELLELLDRIEELQELLREAEELEEELQLE-ELEQEIAALLAEAGV 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 330 TPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKV---------QQQLQDEVRQANAQLLEERKKRET-HEALARRLQK 399
Cdd:COG4717 382 EDEEELRAALEQAEEYQELKEELEELEEQLEELLGEleellealdEEELEEELEELEEELEELEEELEElREELAELEAE 461
|
410 420 430
....*....|....*....|....*....|....*.
gi 568938616 400 RNALLTKAQLSQALEELGVQKQRADTLEMELKMLKA 435
Cdd:COG4717 462 LEQLEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
75-572 |
7.34e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 7.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 75 ELSHKRARVELERAASTNARNYEREV-DRNQELLARIRQLQECEATAEEKM---REQLERHRLCKQNLDAVSQQLREQED 150
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKeKELEEVLREINEISSELPELREELeklEKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 151 SLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQ--RKWQEANQKIQELQASQDERAEH-EQKIKD 227
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEfyEEYLDELREIEKRLSRLEEEINGiEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 228 LEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTeeLEGLQRKLSRQEKMQEalvDLELEK 307
Cdd:PRK03918 333 LEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAKE---EIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 308 EKLLAKLQSWENLDQTMGLNLRTPEDlSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQdEVRQANAQLLEERKKR 387
Cdd:PRK03918 408 SKITARIGELKKEIKELKKAIEELKK-AKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELK-EIEEKERKLRKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 388 ETHEALARRLQKRNALL-----TKAQLSQ-ALEELGVQKQRADTLEMELKMLKAQTSSAESSFsfckEEVDALRLKVEEL 461
Cdd:PRK03918 486 EKVLKKESELIKLKELAeqlkeLEEKLKKyNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAEL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 462 EGERSRLEQEKQVLEMQMEKLTLQG-DYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPIPAD 540
Cdd:PRK03918 562 EKKLDELEEELAELLKELEELGFESvEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKR 641
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 568938616 541 LEAASS---------------------LPSSKEVAELRKQVESAELKNQRLKE 572
Cdd:PRK03918 642 LEELRKeleelekkyseeeyeelreeyLELSRELAGLRAELEELEKRREEIKK 694
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
53-391 |
7.49e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 7.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 53 ERAEQIRSKSYLIQVEREKMQMELshkRARVELERAAST-NARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERH 131
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKADEL---KKAEELKKAEEKkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 132 RLCKqnldavSQQLREQEDSLASAREM--ISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQ 209
Cdd:PTZ00121 1605 KKMK------AEEAKKAEEAKIKAEELkkAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 210 ELQASQDERAEHEQKIKDleqklclQEQDAAVVKSMKSELMRMPRMERELKRLHEENT----HLREMKETNGLLTEEL-- 283
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKK-------EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKikaeEAKKEAEEDKKKAEEAkk 1751
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 284 -EGLQRKLSRQEKMQEALV-DLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVelqqreltLKEKNNSITSSARG 361
Cdd:PTZ00121 1752 dEEEKKKIAHLKKEEEKKAeEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN--------IIEGGKEGNLVIND 1823
|
330 340 350
....*....|....*....|....*....|
gi 568938616 362 LEKVQQQLQDEVRQANAQLLEERKKRETHE 391
Cdd:PTZ00121 1824 SKEMEDSAIKEVADSKNMQLEEADAFEKHK 1853
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
50-220 |
9.47e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 9.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARV-ELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQL 128
Cdd:COG4942 73 ALEQELAALEAELAELEKEIAELRAELEAQKEELaELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 129 ERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLsamDQKVQVKRLESEKQELKEQLELQQRKWQEANQKI 208
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKA---ERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
170
....*....|..
gi 568938616 209 QELQASQDERAE 220
Cdd:COG4942 230 ARLEAEAAAAAE 241
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
139-481 |
1.03e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 42.48 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 139 DAVSQQLREQEDSLASaREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASqder 218
Cdd:PRK10246 409 DEVAAALAQHAEQRPL-RQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTI---- 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 219 AEHEQKIKDLEQK-----------LCLQEQDAAVVKSMKSEL----MRMPRMERELKRLHEENTHLREmketngllteEL 283
Cdd:PRK10246 484 CEQEARIKDLEAQraqlqagqpcpLCGSTSHPAVEAYQALEPgvnqSRLDALEKEVKKLGEEGAALRG----------QL 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 284 EGLQRKLSRQEKMQEALvdleLEKEKLLAklQSWENLDQTMGLNLRTPEDLSRFVVELQQRE-------------LTLKE 350
Cdd:PRK10246 554 DALTKQLQRDESEAQSL----RQEEQALT--QQWQAVCASLNITLQPQDDIQPWLDAQEEHErqlrllsqrhelqGQIAA 627
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 351 KNNSITSSARGLEKVQQQLQDEVRQANAQLLEE-----------------RKKRETHEALARRLQKRNALLT-------- 405
Cdd:PRK10246 628 HNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEdeeaswlatrqqeaqswQQRQNELTALQNRIQQLTPLLEtlpqsddl 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 406 -KAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALR-----------LKVEELEGERSRLEQEKQ 473
Cdd:PRK10246 708 pHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALqasvfddqqafLAALLDEETLTQLEQLKQ 787
|
....*...
gi 568938616 474 VLEMQMEK 481
Cdd:PRK10246 788 NLENQRQQ 795
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
50-403 |
1.22e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARV-ELERAASTNARNY-------EREVDRNQELLARIRQLQECEATAE 121
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIeELEEEIEELRERFgdapvdlGNAEDFLEELREERDELREREAELE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 122 EKMREQLERHRLCKQNLDA-----VSQQLREQE--DSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKqELKEQL 194
Cdd:PRK02224 433 ATLRTARERVEEAEALLEAgkcpeCGQPVEGSPhvETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV-EAEDRI 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 195 ELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLclqEQDAAVVKSMKSELMRmpRMERELKRLHEENTHLREmke 274
Cdd:PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEELRERAAEL---EAEAEEKREAAAEAEE--EAEEAREEVAELNSKLAE--- 583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 275 tnglLTEELEGLQRKLSRQEKMQEALVDLELEKEKL--LAKLQSwENLDQTMGLNLRTPEDLSRF----VVELQQRELTL 348
Cdd:PRK02224 584 ----LKERIESLERIRTLLAAIADAEDEIERLREKReaLAELND-ERRERLAEKRERKRELEAEFdearIEEAREDKERA 658
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 568938616 349 KEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNAL 403
Cdd:PRK02224 659 EEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEAL 713
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
126-486 |
1.50e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 126 EQLERhrlCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSamdqkvqVKRLESEKQELKEQLELQQRK---WQ 202
Cdd:COG3096 347 EKIER---YQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEE-------VDSLKSQLADYQQALDVQQTRaiqYQ 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 203 EANQKIQE------------------LQASQDERAEHEQKIKDLEQKLCLQ-------EQDAAVVKSMKSELMRMPRME- 256
Cdd:COG3096 417 QAVQALEKaralcglpdltpenaedyLAAFRAKEQQATEEVLELEQKLSVAdaarrqfEKAYELVCKIAGEVERSQAWQt 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 257 -RELKRLHEENTHLREMKETnglLTEELEGLQRKLSRQEKMQEALvdlelekekllaklqswENLDQTMGLNLRTPEDLS 335
Cdd:COG3096 497 aRELLRRYRSQQALAQRLQQ---LRAQLAELEQRLRQQQNAERLL-----------------EEFCQRIGQQLDAAEELE 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 336 RFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALArrlqkrnalltkAQLSQALEE 415
Cdd:COG3096 557 ELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLR------------EQSGEALAD 624
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568938616 416 L-GVQKQRADTLEMElkmlkaqtssaessfsfckeevdalrlkvEELEGERSRLEQEKQVLEMQMEKLTLQG 486
Cdd:COG3096 625 SqEVTAAMQQLLERE-----------------------------REATVERDELAARKQALESQIERLSQPG 667
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
42-308 |
1.51e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 42 QKQYEYHMQLEERAEQiRSKSYLIQVEREKmQMELSHKRARVELERAASTNARNYEREVDRNQELlARIRQ---LQECEA 118
Cdd:pfam17380 288 QQQEKFEKMEQERLRQ-EKEEKAREVERRR-KLEEAEKARQAEMDRQAAIYAEQERMAMEREREL-ERIRQeerKRELER 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 119 TAEEKMREQLERHRlckqNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQlelQQ 198
Cdd:pfam17380 365 IRQEEIAMEISRMR----ELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQR---EV 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 199 RKWQEanQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMEREL--KRLHEENTHLREMKETN 276
Cdd:pfam17380 438 RRLEE--ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKIleKELEERKQAMIEEERKR 515
|
250 260 270
....*....|....*....|....*....|..
gi 568938616 277 GLLTEELEGLQRKLSRQEKMQEALVDLELEKE 308
Cdd:pfam17380 516 KLLEKEMEERQKAIYEEERRREAEEERRKQQE 547
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
102-333 |
1.82e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 102 RNQELLARIRQLQECEATAEeKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSElqlsamdqkvqvk 181
Cdd:PRK01156 150 QRKKILDEILEINSLERNYD-KLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSI------------- 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 182 rLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKR 261
Cdd:PRK01156 216 -TLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNR 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568938616 262 lhEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMgLNLRTPED 333
Cdd:PRK01156 295 --NYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQI-LELEGYEM 363
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
187-425 |
2.03e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.44 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 187 KQELKEQLE-LQQRKWQEANQK--IQELQASQ---DERAEHEQKIKDLEQKLclqeQDAAvvKSMKSelmrmprMERELK 260
Cdd:PRK11281 38 EADVQAQLDaLNKQKLLEAEDKlvQQDLEQTLallDKIDRQKEETEQLKQQL----AQAP--AKLRQ-------AQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 261 RLHEENThlREMKETngLLTEELEGLQRKLsrqekmqealvdlelekEKLLAKLQSW-ENLDQTMGL--NLRT-PEDLSR 336
Cdd:PRK11281 105 ALKDDND--EETRET--LSTLSLRQLESRL-----------------AQTLDQLQNAqNDLAEYNSQlvSLQTqPERAQA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 337 FVVELQQR--ELTLKEKNNSITSSARGLEKvQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTK--AQLS-- 410
Cdd:PRK11281 164 ALYANSQRlqQIRNLLKGGKVGGKALRPSQ-RVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTAriQRLEhq 242
|
250
....*....|....*.
gi 568938616 411 -QALEELGVQKQRADT 425
Cdd:PRK11281 243 lQLLQEAINSKRLTLS 258
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
363-564 |
2.34e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 363 EKVQQQLQDEVRQANAQLLEERKKRETHEAlarrlQKRNALLTKAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAES 442
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEE-----QREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 443 SFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECE 522
Cdd:PRK02224 273 EREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDAD 352
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568938616 523 RLRGLVHAL-ERGGPIPADLEAASSLPSSKE--VAELRKQVESAE 564
Cdd:PRK02224 353 DLEERAEELrEEAAELESELEEAREAVEDRReeIEELEEEIEELR 397
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
362-572 |
2.82e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 2.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 362 LEKVQQQLQDEVRQANaqllEERKKRETHEALARRLQKRNALLTKAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAE 441
Cdd:TIGR02168 198 LERQLKSLERQAEKAE----RYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 442 SSFSFCKEEVDALRLKVEELEGERSRLEQEKQV-------LEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQHEDH 514
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYALANEISRLEQQKQIlrerlanLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568938616 515 DRLQEECERLRGLVHALERGgpiPADLEAAsSLPSSKEVAELRKQVESAELKNQRLKE 572
Cdd:TIGR02168 354 ESLEAELEELEAELEELESR---LEELEEQ-LETLRSKVAQLELQIASLNNEIERLEA 407
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
37-295 |
4.22e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 37 ASGSLQKQYEYHMQLEERAEQIRSK-SYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIrqlqE 115
Cdd:PRK04863 849 LERALADHESQEQQQRSQLEQAKEGlSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQL----E 924
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 116 CEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQ-----KVQVKRLESEKQEL 190
Cdd:PRK04863 925 PIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDlneklRQRLEQAEQERTRA 1004
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 191 KEQLELQQRKWQEANQKIQELQAS----QDERAEHEQKIKDLEQKLCLQEQDAAvvKSMKSELMrmprmerelKRLHEEN 266
Cdd:PRK04863 1005 REQLRQAQAQLAQYNQVLASLKSSydakRQMLQELKQELQDLGVPADSGAEERA--RARRDELH---------ARLSANR 1073
|
250 260
....*....|....*....|....*....
gi 568938616 267 THLREMKETNGLLTEELEGLQRKLSRQEK 295
Cdd:PRK04863 1074 SRRNQLEKQLTFCEAEMDNLTKKLRKLER 1102
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
166-474 |
4.43e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 166 VSELQLSAMDQKVQVKRLESEKQELKEQLElQQRKWQEANQKIQ-ELQASQDERAEHEQKIKDLEQKLCLQEQDAavvKS 244
Cdd:pfam17380 284 VSERQQQEKFEKMEQERLRQEKEEKAREVE-RRRKLEEAEKARQaEMDRQAAIYAEQERMAMERERELERIRQEE---RK 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 245 MKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQR----KLSRQEKMQEALVDLE-LEKEKLLAKLQSWEN 319
Cdd:pfam17380 360 RELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKvkilEEERQRKIQQQKVEMEqIRAEQEEARQREVRR 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 320 LDQTMGlnlRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQ---QQLQDEVRQANAQLLEERKKRETHEALARR 396
Cdd:pfam17380 440 LEEERA---REMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKrdrKRAEEQRRKILEKELEERKQAMIEEERKRK 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 397 L------QKRNALLTKAQLSQALEELGVQKQRADTLEMELKMLKAqtSSAESSFSFCKEEVDALRlKVEELEGERSRLEQ 470
Cdd:pfam17380 517 LlekemeERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKA--TEERSRLEAMEREREMMR-QIVESEKARAEYEA 593
|
....
gi 568938616 471 EKQV 474
Cdd:pfam17380 594 TTPI 597
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
49-271 |
4.59e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 49 MQLEERA---EQIRSKSYLIQVER----EKMQMELSHK--RARVELERAASTNARNYEREVDRNQEL--LARIRQLQEcE 117
Cdd:pfam17380 353 IRQEERKrelERIRQEEIAMEISRmrelERLQMERQQKneRVRQELEAARKVKILEEERQRKIQQQKveMEQIRAEQE-E 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 118 ATAEEKMREQLERHRlckqNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQK----VQVKRLESEKQELKEQ 193
Cdd:pfam17380 432 ARQREVRRLEEERAR----EMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKraeeQRRKILEKELEERKQA 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 194 LELQQRKWQEANQKIQELQ---ASQDERAEHEQ---KIKDLEQKLCLQEQdAAVVKSMKSELMRMPRmERELKRLHEENT 267
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQkaiYEEERRREAEEerrKQQEMEERRRIQEQ-MRKATEERSRLEAMER-EREMMRQIVESE 585
|
....
gi 568938616 268 HLRE 271
Cdd:pfam17380 586 KARA 589
|
|
| COG5644 |
COG5644 |
U3 small nucleolar RNA-associated protein 14 [Function unknown]; |
37-471 |
6.50e-03 |
|
U3 small nucleolar RNA-associated protein 14 [Function unknown];
Pssm-ID: 227931 [Multi-domain] Cd Length: 869 Bit Score: 39.69 E-value: 6.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 37 ASGSLQKQYEYHMQLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQec 116
Cdd:COG5644 322 SNNGLASSFEPRTESERKMHQALLDAGLENESALKKQEELALNKLSVEEVAERTRQLRFMRELMFREERKAKRVAKIK-- 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 117 eataeEKMREQLERHRLCKQ-NLDAVSQQLREQEDSLASAREMISSLKGRVSELqlsamdQKVQVKRLeSEKQELKEQLE 195
Cdd:COG5644 400 -----SKTYRKIRKNRKEKEmALIPKSEDLENEKSEEARALERMTQRHKNTSSW------TRKMLERA-SHGEGTREAVN 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 196 LQQRKWQEANQKIQElQASQDERAEHEQKIKDLEQklclQEQDAAVVKSMKSELMRMPRMERELKRlHEENTHLREMKET 275
Cdd:COG5644 468 EQIRKGDELMQRIHG-KEIMDGEDVSEFSDSDYDT----NEQVSTAFEKIRNEEELKGVLGMKFMR-DASNRQMAASKIS 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 276 NGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLaklqswENLDQTMGLNLRTPEDlsRFVVELQQRELTLKEKNNSI 355
Cdd:COG5644 542 VADLVKVENGDDIDVGELDEVGGDAIYANAGRREVF------PVVEQRRKLAPRKRKE--DFVTPSTSLEKSMDRILHGQ 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 356 TSSARGLEKVQQQLQdEVRQANAQLleERKKRETHEALAR-----RLQKRNALLTKAQLSQALEELGVQKQRADTL-EME 429
Cdd:COG5644 614 KKRAEGAVVFEKPLE-ATENFNPWL--DRKMRRIKRIKKKayrriRRDKRLKKKMPEEENTQENHLGSEKKRHGGVpDIL 690
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 568938616 430 LKMLKAQTSS-------------AESSFSFCKEEVDALRLK----VEELEGERSRLEQE 471
Cdd:COG5644 691 LKEIEVEDDEktpilspggdeevEEGLSIKTQEELVALAFAgddvVAEFEEEKREIVNR 749
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
69-532 |
6.58e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.64 E-value: 6.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 69 REKMQMELSHKRARVELERAASTNAR--NYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLR 146
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKDLHERlnGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 147 EQEDSLASAREMISSLKGRVSelqlsamDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELqasQDERAEHEQKIK 226
Cdd:PRK02224 262 DLRETIAETEREREELAEEVR-------DLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL---EDRDEELRDRLE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 227 DLEQKLCLQEQDAAvvksmkselmrmpRMERELKRLHEENTHLREMKETnglLTEELEGLQRKLsrqEKMQEALVDLELE 306
Cdd:PRK02224 332 ECRVAAQAHNEEAE-------------SLREDADDLEERAEELREEAAE---LESELEEAREAV---EDRREEIEELEEE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 307 KEKLLAKLQ-SWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLE-----KVQQQLQD--------E 372
Cdd:PRK02224 393 IEELRERFGdAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpECGQPVEGsphvetieE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 373 VRQANAQLLEERKK-RETHEALARRLQK----------RNALLTKAQLSQAL-----EELGVQKQRADTLEMELKMLKAQ 436
Cdd:PRK02224 473 DRERVEELEAELEDlEEEVEEVEERLERaedlveaedrIERLEERREDLEELiaerrETIEEKRERAEELRERAAELEAE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 437 TSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQhedhDR 516
Cdd:PRK02224 553 AEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERR----ER 628
|
490
....*....|....*.
gi 568938616 517 LQEECERLRGLVHALE 532
Cdd:PRK02224 629 LAEKRERKRELEAEFD 644
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
97-293 |
6.69e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.46 E-value: 6.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 97 EREVDRNqELLAR-IRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMD 175
Cdd:COG2433 360 PPDVDRD-EVKARvIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEE 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 176 QKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKlcLQEQDAAVVKSMKSELMRMPRM 255
Cdd:COG2433 439 KDERIERLERELSEARSEERREIRKDREISRLDREIERLERELEEERERIEELKRK--LERLKELWKLEHSGELVPVKVV 516
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568938616 256 ER----ELKRLHEEnthlREMKETNGLLTEELEGLQRKLSRQ 293
Cdd:COG2433 517 EKftkeAIRRLEEE----YGLKEGDVVYLRDASGAGRSTAEL 554
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
134-438 |
6.79e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 39.68 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 134 CKQNLDAVSQQLREQEDslasAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELqqrKWQEANQKIQELQA 213
Cdd:COG5022 873 SAQRVELAERQLQELKI----DVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIA---RLKKLLNNIDLEEG 945
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 214 SQDERAEHEQKIKDLEQKLCLQEQdaavvksmKSELMRMPRMERELKRlhEENTHLREMKETNGLLTE---ELEGLQRKL 290
Cdd:COG5022 946 PSIEYVKLPELNKLHEVESKLKET--------SEEYEDLLKKSTILVR--EGNKANSELKNFKKELAElskQYGALQEST 1015
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 291 SRQEKMQEALVDLELEKEKLL---AKLQSWENLDQTMGLNLRTPEDLSRFVVELQQR--ELTLKEKNNSITSSARGLEKv 365
Cdd:COG5022 1016 KQLKELPVEVAELQSASKIISsesTELSILKPLQKLKGLLLLENNQLQARYKALKLRreNSLLDDKQLYQLESTENLLK- 1094
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568938616 366 qQQLQDEVRQANAQLLEERKKRETHEAlarrLQKRNALLTKAQ--LSQALEELGVQKQRADTLEMELKMLKAQTS 438
Cdd:COG5022 1095 -TINVKDLEVTNRNLVKPANVLQFIVA----QMIKLNLLQEISkfLSQLVNTLEPVFQKLSVLQLELDGLFWEAN 1164
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
174-462 |
7.13e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.50 E-value: 7.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 174 MDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKS--------- 244
Cdd:PRK01156 155 LDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIeynnamddy 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 245 --MKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLSRQE-----KMQEALVDLELEKEKLLAKLQSW 317
Cdd:PRK01156 235 nnLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIIndpvyKNRNYINDYFKYKNDIENKKQIL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 318 ENLD---QTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSItSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALA 394
Cdd:PRK01156 315 SNIDaeiNKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQI-LELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFI 393
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568938616 395 RRLqkrnalltkaqlsqaleeLGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELE 462
Cdd:PRK01156 394 SEI------------------LKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELS 443
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
340-551 |
7.78e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.98 E-value: 7.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 340 ELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLE-ERKKRETHEALARRLQKRNALLTKAQLS--QALEEL 416
Cdd:COG4942 45 ALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAElEKEIAELRAELEAQKEELAELLRALYRLgrQPPLAL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 417 GVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRtkvl 496
Cdd:COG4942 125 LLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKL---- 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568938616 497 hmsLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPIPADLEAASSLPSSK 551
Cdd:COG4942 201 ---LARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
49-232 |
7.88e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.61 E-value: 7.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 49 MQLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEAtaeekmreql 128
Cdd:COG3206 208 VDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEA---------- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568938616 129 erhrlckqNLDAVSQQLREQEDSLASAREMISSLKGRV-SELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQK 207
Cdd:COG3206 278 --------ELAELSARYTPNHPDVIALRAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL 349
|
170 180
....*....|....*....|....*
gi 568938616 208 IQELQASQDERAEHEQKIKDLEQKL 232
Cdd:COG3206 350 EAELRRLEREVEVARELYESLLQRL 374
|
|
| |
