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Conserved domains on  [gi|2024418447|ref|XP_004942175|]
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beta-microseminoprotein [Gallus gallus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PSP94 super family cl05416
Beta-microseminoprotein (PSP-94); This family consists of the mammalian specific protein ...
 21-114 1.47e-22

Beta-microseminoprotein (PSP-94); This family consists of the mammalian specific protein beta-microseminoprotein. Prostatic secretory protein of 94 amino acids (PSP94), also called beta-microseminoprotein, is a small, nonglycosylated protein, rich in cysteine residues. It was first isolated as a major protein from human seminal plasma. The exact function of this protein is unknown.


The actual alignment was detected with superfamily member pfam05825:

Pssm-ID: 283482  Cd Length: 94  Bit Score: 84.21  E-value: 1.47e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024418447  21 SCYFLPLN--PVKRGDEiigCYDMKGEPHEFNTHWKTKDCLECSCSNSGISCCTAYATPVNFDEEKCISIFNNTACAYEV 98
Cdd:pfam05825   1 QCSFIPNErlPNQKSDE---CTDLKGNKHPLNSVWKTKNCEWCTCGKTAITCCTTAAIPVGYDKKKCQRIFHKENCTYSV 77

                          90
                  ....*....|....*.
gi 2024418447  99 VEKADHSKTCEVHEWV 114
Cdd:pfam05825  78 VEKKNPGKTCPVDGWT 93
 
Name Accession Description Interval E-value
PSP94 pfam05825
Beta-microseminoprotein (PSP-94); This family consists of the mammalian specific protein ...
 21-114 1.47e-22

Beta-microseminoprotein (PSP-94); This family consists of the mammalian specific protein beta-microseminoprotein. Prostatic secretory protein of 94 amino acids (PSP94), also called beta-microseminoprotein, is a small, nonglycosylated protein, rich in cysteine residues. It was first isolated as a major protein from human seminal plasma. The exact function of this protein is unknown.


Pssm-ID: 283482  Cd Length: 94  Bit Score: 84.21  E-value: 1.47e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024418447  21 SCYFLPLN--PVKRGDEiigCYDMKGEPHEFNTHWKTKDCLECSCSNSGISCCTAYATPVNFDEEKCISIFNNTACAYEV 98
Cdd:pfam05825   1 QCSFIPNErlPNQKSDE---CTDLKGNKHPLNSVWKTKNCEWCTCGKTAITCCTTAAIPVGYDKKKCQRIFHKENCTYSV 77

                          90
                  ....*....|....*.
gi 2024418447  99 VEKADHSKTCEVHEWV 114
Cdd:pfam05825  78 VEKKNPGKTCPVDGWT 93
 
Name Accession Description Interval E-value
PSP94 pfam05825
Beta-microseminoprotein (PSP-94); This family consists of the mammalian specific protein ...
 21-114 1.47e-22

Beta-microseminoprotein (PSP-94); This family consists of the mammalian specific protein beta-microseminoprotein. Prostatic secretory protein of 94 amino acids (PSP94), also called beta-microseminoprotein, is a small, nonglycosylated protein, rich in cysteine residues. It was first isolated as a major protein from human seminal plasma. The exact function of this protein is unknown.


Pssm-ID: 283482  Cd Length: 94  Bit Score: 84.21  E-value: 1.47e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024418447  21 SCYFLPLN--PVKRGDEiigCYDMKGEPHEFNTHWKTKDCLECSCSNSGISCCTAYATPVNFDEEKCISIFNNTACAYEV 98
Cdd:pfam05825   1 QCSFIPNErlPNQKSDE---CTDLKGNKHPLNSVWKTKNCEWCTCGKTAITCCTTAAIPVGYDKKKCQRIFHKENCTYSV 77

                          90
                  ....*....|....*.
gi 2024418447  99 VEKADHSKTCEVHEWV 114
Cdd:pfam05825  78 VEKKNPGKTCPVDGWT 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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