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Conserved domains on  [gi|157823950|ref|NP_997554|]
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zinc finger protein 318 isoform 1 [Mus musculus]

Protein Classification

PRK10263 and ZnF_U1 domain-containing protein( domain architecture ID 13281587)

protein containing domains PRK10263, PTZ00395, PTZ00121, and ZnF_U1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 1155-1189 1.27e-09

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 55.34  E-value: 1.27e-09
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 157823950   1155 VTGFYCQLCEEFLGDPISGEQHVKGHQHNENYKKY 1189
Cdd:smart00451    1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 18-142 1.47e-08

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 60.57  E-value: 1.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   18 GSASGPPPGR-----PVGASSG--PTRRPSSPPPPSCSSLRLPARRhRSPSGHRGRWASPSPPRGRRGSPSPPRGRRASP 90
Cdd:PHA03307  285 ASSSSSPRERspspsPSSPGSGpaPSSPRASSSSSSSRESSSSSTS-SSSESSRGAAVSPGPSPSRSPSPSRPPPPADPS 363

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 157823950   91 SPTRGRRASPSPPRGRRGSPSPPRAR-RGSPSPPRSRRHYPPGLGGFRGSIRG 142
Cdd:PHA03307  364 SPRKRPRPSRAPSSPAASAGRPTRRRaRAAVAGRARRRDATGRFPAGRPRPSP 416
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 1085-1119 2.34e-08

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 51.48  E-value: 2.34e-08
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 157823950   1085 AGSHWCKDCNTTCGTMFDFFTHMHNKKHTQTLDPY 1119
Cdd:smart00451    1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
MAD super family cl37733
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
 904-1035 1.55e-04

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


The actual alignment was detected with superfamily member pfam05557:

Pssm-ID: 461677 [Multi-domain]  Cd Length: 660  Bit Score: 47.04  E-value: 1.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   904 EKNRASQKQ-KVIEEREKLKteQEARQKKMfylttELERLHKQQGEMLRKKRREKDGhkdpLLMEVSRLQDSIMKDIAEL 982
Cdd:pfam05557   48 DRNQELQKRiRLLEKREAEA--EEALREQA-----ELNRLKKKYLEALNKKLNEKES----QLADAREVISCLKNELSEL 116

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 157823950   983 HKETEEAE----KKQSELDKVAQILgiDIFDKSLKSSNDSKESTEKPEKEKSKSPEK 1035
Cdd:pfam05557  117 RRQIQRAElelqSTNSELEELQERL--DLLKAKASEAEQLRQNLEKQQSSLAEAEQR 171
PTZ00121 super family cl31754
MAEBL; Provisional
 895-1371 2.84e-03

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.21  E-value: 2.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  895 KYNPKKISDEKNRASQKQKVIEEREK---LKTEQEARQKKMFYLTTELERlhKQQGEMLRKKRREKDGHKDPLLMEVSRL 971
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKadeAKKKAEEDKKKADELKKAAAA--KKKADEAKKKAEEKKKADEAKKKAEEAK 1444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  972 QDSIMKDIAELHKETEEAEKKQSELDKVaqilgiDIFDKSLKSSNDSKESTEKPEKEKSKSPEKELSPSNSSSSNKESKM 1051
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKA------DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950 1052 NEKSCIKSPSSTESLQPT--------VKQSDQPVAAYEYYDAgshwckdcnttcgtmfdfftHMHNKKHTQTLDPYNRPW 1123
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKAdeakkaeeKKKADELKKAEELKKA--------------------EEKKKAEEAKKAEEDKNM 1578

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950 1124 ASKTQSEAKQDTVKRTDKITvpaKGSEFLIPVTGFYCQLCEE--FLGDPISGEQHVKGHQHNENYKKYVE----ENPLYE 1197
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVM---KLYEEEKKMKAEEAKKAEEakIKAEELKKAEEEKKKVEQLKKKEAEEkkkaEELKKA 1655

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950 1198 ERRNLDRQAGLAVVLETERRRQNELKR----KLNEKPKEEKIEKKARIVREVKEDDKAPGELEEQL--SEDGSAPEKGEV 1271
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKaeedEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELkkAEEENKIKAEEA 1735

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950 1272 KGNASLRPQVKEEVKKEPSVASIAASFGKFSWKKPEKEEEKgsvvtpgapKEDTVETSKDRDDGKAEVGKAKPIK-IKLS 1350
Cdd:PTZ00121 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE---------KEAVIEEELDEEDEKRRMEVDKKIKdIFDN 1806

                         490       500
                  ....*....|....*....|.
gi 157823950 1351 GKTVIAHTSPWTPVVTTSTQT 1371
Cdd:PTZ00121 1807 FANIIEGGKEGNLVINDSKEM 1827
 
Name Accession Description Interval E-value
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 1155-1189 1.27e-09

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 55.34  E-value: 1.27e-09
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 157823950   1155 VTGFYCQLCEEFLGDPISGEQHVKGHQHNENYKKY 1189
Cdd:smart00451    1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 18-142 1.47e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 60.57  E-value: 1.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   18 GSASGPPPGR-----PVGASSG--PTRRPSSPPPPSCSSLRLPARRhRSPSGHRGRWASPSPPRGRRGSPSPPRGRRASP 90
Cdd:PHA03307  285 ASSSSSPRERspspsPSSPGSGpaPSSPRASSSSSSSRESSSSSTS-SSSESSRGAAVSPGPSPSRSPSPSRPPPPADPS 363

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 157823950   91 SPTRGRRASPSPPRGRRGSPSPPRAR-RGSPSPPRSRRHYPPGLGGFRGSIRG 142
Cdd:PHA03307  364 SPRKRPRPSRAPSSPAASAGRPTRRRaRAAVAGRARRRDATGRFPAGRPRPSP 416
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 1085-1119 2.34e-08

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 51.48  E-value: 2.34e-08
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 157823950   1085 AGSHWCKDCNTTCGTMFDFFTHMHNKKHTQTLDPY 1119
Cdd:smart00451    1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
 904-1035 1.55e-04

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 461677 [Multi-domain]  Cd Length: 660  Bit Score: 47.04  E-value: 1.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   904 EKNRASQKQ-KVIEEREKLKteQEARQKKMfylttELERLHKQQGEMLRKKRREKDGhkdpLLMEVSRLQDSIMKDIAEL 982
Cdd:pfam05557   48 DRNQELQKRiRLLEKREAEA--EEALREQA-----ELNRLKKKYLEALNKKLNEKES----QLADAREVISCLKNELSEL 116

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 157823950   983 HKETEEAE----KKQSELDKVAQILgiDIFDKSLKSSNDSKESTEKPEKEKSKSPEK 1035
Cdd:pfam05557  117 RRQIQRAElelqSTNSELEELQERL--DLLKAKASEAEQLRQNLEKQQSSLAEAEQR 171
PTZ00121 PTZ00121
MAEBL; Provisional
 899-1031 1.67e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.06  E-value: 1.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  899 KKISDEKNRASQKQKViEEREKLKTEQEARQkkmfylttelERLHKQQGEMLRKKRREKDGHKDPLLMEVSRlqdsiMKD 978
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKA-EEENKIKAAEEAKK----------AEEDKKKAEEAKKAEEDEKKAAEALKKEAEE-----AKK 1703

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 157823950  979 IAELHKETEEAEKKQSELDKVAQILGIDIFDKSLKSSNDSKESTE--KPEKEKSK 1031
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEakKDEEEKKK 1758
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
899-1036 3.55e-04

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 44.90  E-value: 3.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  899 KKISDEKNRASQKQKVIEEREKLK-TEQEARQKKMfylttELERLHKQqgemLRKKRREKDGHKDpLLMEVSRLQDSIMK 977
Cdd:COG1340   140 EKIKELEKELEKAKKALEKNEKLKeLRAELKELRK-----EAEEIHKK----IKELAEEAQELHE-EMIELYKEADELRK 209

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157823950  978 DIAELHKETEEAEKKQSELDKVAQILGIDI--FDKSLKSSNDSKESTEKPEKEKSKSPEKE 1036
Cdd:COG1340   210 EADELHKEIVEAQEKADELHEEIIELQKELreLRKELKKLRKKQRALKREKEKEELEEKAE 270
QWRF pfam04484
QWRF family; AUG8 belongs to the plant QWRF motif-containing protein family, which also ...
 18-150 3.57e-04

QWRF family; AUG8 belongs to the plant QWRF motif-containing protein family, which also includes microtubule-associated protein ENDOSPERM DEFECTIVE 1 and SNOWY COTYLEDON 3. AUG8 binds the microtubule plus-end and participates in the reorientation of microtubules in hypocotyls (the stem of a germinating seedling).


Pssm-ID: 461327 [Multi-domain]  Cd Length: 304  Bit Score: 45.04  E-value: 3.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950    18 GSASGPPPGRPVGA-----SSGPTRRPSSPPPPSCSSLRLPARRHRSPSghrgrwASPSPPRGRRGS-PSPPRGRRASPS 91
Cdd:pfam04484    5 GSSSGTPRGIVVPArflqeTSSRLRRLSDPGSPTSSSSKVPSKKSRLDG------APSSSPRSRANSrASPGRGSSRALS 78

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 157823950    92 PTRGRRASPSPPrgrRGSPSPPRARRGSPSPPRSrrhyPPGLGGFRGSIRGESrADFAR 150
Cdd:pfam04484   79 PSKLGSSTSSPS---RGLPSPSRPRSSSSSKASS----SAGSGKGVPSVLSFG-ADVRR 129
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 899-1031 1.38e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 43.86  E-value: 1.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   899 KKISDEKNRASQKQKVIEER-EKLKTEQEArqkkmfyLTTELERLHKQQGEMLRKKRREKDGHKDPLLMEVsrlQDSIMK 977
Cdd:TIGR04523  499 KKLNEEKKELEEKVKDLTKKiSSLKEKIEK-------LESEKKEKESKISDLEDELNKDDFELKKENLEKE---IDEKNK 568

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157823950   978 DIAELHKETEEAEKKQSELDKVAQILGIDIFD-------KSLKSSNDSKEsTEKPEKEKSK 1031
Cdd:TIGR04523  569 EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDlikeieeKEKKISSLEKE-LEKAKKENEK 628
PTZ00121 PTZ00121
MAEBL; Provisional
 895-1371 2.84e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.21  E-value: 2.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  895 KYNPKKISDEKNRASQKQKVIEEREK---LKTEQEARQKKMFYLTTELERlhKQQGEMLRKKRREKDGHKDPLLMEVSRL 971
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKadeAKKKAEEDKKKADELKKAAAA--KKKADEAKKKAEEKKKADEAKKKAEEAK 1444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  972 QDSIMKDIAELHKETEEAEKKQSELDKVaqilgiDIFDKSLKSSNDSKESTEKPEKEKSKSPEKELSPSNSSSSNKESKM 1051
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKA------DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950 1052 NEKSCIKSPSSTESLQPT--------VKQSDQPVAAYEYYDAgshwckdcnttcgtmfdfftHMHNKKHTQTLDPYNRPW 1123
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKAdeakkaeeKKKADELKKAEELKKA--------------------EEKKKAEEAKKAEEDKNM 1578

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950 1124 ASKTQSEAKQDTVKRTDKITvpaKGSEFLIPVTGFYCQLCEE--FLGDPISGEQHVKGHQHNENYKKYVE----ENPLYE 1197
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVM---KLYEEEKKMKAEEAKKAEEakIKAEELKKAEEEKKKVEQLKKKEAEEkkkaEELKKA 1655

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950 1198 ERRNLDRQAGLAVVLETERRRQNELKR----KLNEKPKEEKIEKKARIVREVKEDDKAPGELEEQL--SEDGSAPEKGEV 1271
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKaeedEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELkkAEEENKIKAEEA 1735

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950 1272 KGNASLRPQVKEEVKKEPSVASIAASFGKFSWKKPEKEEEKgsvvtpgapKEDTVETSKDRDDGKAEVGKAKPIK-IKLS 1350
Cdd:PTZ00121 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE---------KEAVIEEELDEEDEKRRMEVDKKIKdIFDN 1806

                         490       500
                  ....*....|....*....|.
gi 157823950 1351 GKTVIAHTSPWTPVVTTSTQT 1371
Cdd:PTZ00121 1807 FANIIEGGKEGNLVINDSKEM 1827
 
Name Accession Description Interval E-value
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 1155-1189 1.27e-09

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 55.34  E-value: 1.27e-09
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 157823950   1155 VTGFYCQLCEEFLGDPISGEQHVKGHQHNENYKKY 1189
Cdd:smart00451    1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 18-142 1.47e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 60.57  E-value: 1.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   18 GSASGPPPGR-----PVGASSG--PTRRPSSPPPPSCSSLRLPARRhRSPSGHRGRWASPSPPRGRRGSPSPPRGRRASP 90
Cdd:PHA03307  285 ASSSSSPRERspspsPSSPGSGpaPSSPRASSSSSSSRESSSSSTS-SSSESSRGAAVSPGPSPSRSPSPSRPPPPADPS 363

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 157823950   91 SPTRGRRASPSPPRGRRGSPSPPRAR-RGSPSPPRSRRHYPPGLGGFRGSIRG 142
Cdd:PHA03307  364 SPRKRPRPSRAPSSPAASAGRPTRRRaRAAVAGRARRRDATGRFPAGRPRPSP 416
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 1085-1119 2.34e-08

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 51.48  E-value: 2.34e-08
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 157823950   1085 AGSHWCKDCNTTCGTMFDFFTHMHNKKHTQTLDPY 1119
Cdd:smart00451    1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 17-128 8.58e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 57.87  E-value: 8.58e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   17 DGSASGPPPGRPVGASSGPTRRPSSPPPPSCsslrlPARRHRSPSGHRGRWASPSPPRGRRGSPSPpRGRRASPSPTRGR 96
Cdd:PHA03307  276 NGPSSRPGPASSSSSPRERSPSPSPSSPGSG-----PAPSSPRASSSSSSSRESSSSSTSSSSESS-RGAAVSPGPSPSR 349

                          90       100       110
                  ....*....|....*....|....*....|..
gi 157823950   97 RASPSPPRGRRGSPSPPRARRGSPSPPRSRRH 128
Cdd:PHA03307  350 SPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS 381
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 16-122 1.19e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.94  E-value: 1.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   16 KDGSASGPPPGRPVGASSGP-------TRRPSSPPPPSCSSLRLPARRHRSPSGHRGRWASPSPPRGRRGSPSPPRGRRA 88
Cdd:PHA03307  302 SPGSGPAPSSPRASSSSSSSresssssTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS 381

                          90       100       110
                  ....*....|....*....|....*....|....
gi 157823950   89 SPSPTRgRRASPSPPRGRRGSPSPPRARRGSPSP 122
Cdd:PHA03307  382 AGRPTR-RRARAAVAGRARRRDATGRFPAGRPRP 414
PHA03247 PHA03247
large tegument protein UL36; Provisional
 24-128 1.25e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   24 PPGRPVGASSGPTRRPSSPPPPSCSSlrlpARRHRSPSGHRGRWASPSPPrgrrgSPSPPRGRRASPSPTRGRRASPSPP 103
Cdd:PHA03247 2569 PPPRPAPRPSEPAVTSRARRPDAPPQ----SARPRAPVDDRGDPRGPAPP-----SPLPPDTHAPDPPPPSPSPAANEPD 2639

                          90       100
                  ....*....|....*....|....*
gi 157823950  104 RGRRGSPSPPRARRGSPSPPRSRRH 128
Cdd:PHA03247 2640 PHPPPTVPPPERPRDDPAPGRVSRP 2664
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 18-127 3.70e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.40  E-value: 3.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   18 GSASGPPPGrPVGASSGPTRRPSSPPPPSCSSLRLPARRHRSPSGHRGRWASPSPPRGRRG----SPSPPRGRRASPSPT 93
Cdd:PHA03307  112 SSPDPPPPT-PPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQaalpLSSPEETARAPSSPP 190

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 157823950   94 RGRRASPSPPRG-----RRGSPSPPRARRGSPSPPRSRR 127
Cdd:PHA03307  191 AEPPPSTPPAAAsprppRRSSPISASASSPAPAPGRSAA 229
PHA03378 PHA03378
EBNA-3B; Provisional
 20-135 5.52e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 48.52  E-value: 5.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   20 ASGPPPGRPVGASSGPTRRPSSPPPPSCSSLRLPARRhRSPSGHRGRWASPS-------PPRGRRGSPSPPRGRRASPSP 92
Cdd:PHA03378  698 PRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRA-RPPAAAPGRARPPAaapgrarPPAAAPGRARPPAAAPGAPTP 776

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 157823950   93 TRGRRASPSPPRGRRGSPSPPRARRGSPSPPRSRRHYPPGLGG 135
Cdd:PHA03378  777 QPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQG 819
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 18-131 5.63e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 48.63  E-value: 5.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   18 GSASGPPPGR--PVGASSGPTRRPSSPPPPSCSSLRLPARRHRSPSGHRGRWASPSP-------PRGRRGSPSPPRGRRA 88
Cdd:PHA03307  187 SSPPAEPPPStpPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSEssgcgwgPENECPLPRPAPITLP 266

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 157823950   89 SPSPTRGRRASPSPPRGRRGSPSPPRARRGSPSPPRSRRHYPP 131
Cdd:PHA03307  267 TRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAP 309
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 16-132 5.68e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 48.63  E-value: 5.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   16 KDGSASGPPPGRPVGASSGPTRRPSSPPPPscsslRLPARRHRSPSGHRGRWASPSPPRGRRGSPSPPRGRRASPSPTRG 95
Cdd:PHA03307  826 PDGGSESSGPARPPGAAARPPPARSSESSK-----SKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGA 900

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 157823950   96 RRASPSPPRGRRGSPSPPrarrGSPSPPRSRRHYPPG 132
Cdd:PHA03307  901 PAPRPRPAPRVKLGPMPP----GGPDPRGGFRRVPPG 933
PHA03247 PHA03247
large tegument protein UL36; Provisional
 18-133 9.25e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 9.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   18 GSASGPPPG--RPVGASSGPTRRPS-SPPPPSCSSLRLPARRHRSPSGHRGRWASPSPPRGRRGSPSPPRGRRASPSPTR 94
Cdd:PHA03247 2774 APAAGPPRRltRPAVASLSESRESLpSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG 2853

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 157823950   95 GRRAsPSPPRGRRGSPSPPRARRGSPSPPRSRRHYPPGL 133
Cdd:PHA03247 2854 GSVA-PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAV 2891
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
 904-1035 1.55e-04

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 461677 [Multi-domain]  Cd Length: 660  Bit Score: 47.04  E-value: 1.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   904 EKNRASQKQ-KVIEEREKLKteQEARQKKMfylttELERLHKQQGEMLRKKRREKDGhkdpLLMEVSRLQDSIMKDIAEL 982
Cdd:pfam05557   48 DRNQELQKRiRLLEKREAEA--EEALREQA-----ELNRLKKKYLEALNKKLNEKES----QLADAREVISCLKNELSEL 116

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 157823950   983 HKETEEAE----KKQSELDKVAQILgiDIFDKSLKSSNDSKESTEKPEKEKSKSPEK 1035
Cdd:pfam05557  117 RRQIQRAElelqSTNSELEELQERL--DLLKAKASEAEQLRQNLEKQQSSLAEAEQR 171
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 20-130 1.55e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 1.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   20 ASGPPPGRPVGASSGPTRRPSSPPPPSCsslrlPARRHRSPSGHRGRWASPSPPRGRRGSPSPPRGRRASPSPTRGRRAS 99
Cdd:PRK07764  407 AAAPAPAAAAPAAAAAPAPAAAPQPAPA-----PAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPA 481

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 157823950  100 PSPPRGRRGSPSPPRARRGSPSPPRS-----RRHYP 130
Cdd:PRK07764  482 PAPPAAPAPAAAPAAPAAPAAPAGADdaatlRERWP 517
PTZ00121 PTZ00121
MAEBL; Provisional
 899-1031 1.67e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.06  E-value: 1.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  899 KKISDEKNRASQKQKViEEREKLKTEQEARQkkmfylttelERLHKQQGEMLRKKRREKDGHKDPLLMEVSRlqdsiMKD 978
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKA-EEENKIKAAEEAKK----------AEEDKKKAEEAKKAEEDEKKAAEALKKEAEE-----AKK 1703

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 157823950  979 IAELHKETEEAEKKQSELDKVAQILGIDIFDKSLKSSNDSKESTE--KPEKEKSK 1031
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEakKDEEEKKK 1758
PHA03270 PHA03270
envelope glycoprotein C; Provisional
 68-141 1.68e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165528 [Multi-domain]  Cd Length: 466  Bit Score: 46.47  E-value: 1.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   68 ASPSPPRGRRGSPS--PPRGR-------RASPSPTRGRRASPSPprgrrGSPSPPRARRGSPSPPRSRRHYPPGLGGFRG 138
Cdd:PHA03270   21 AGAGAPRGAVSNASeaPTSGSpgsaegpRTTPTPTRGKGTPTGP-----ASPPKSGPPKSPPAPFRCKRPDVLARYGSRV 95


                  ...
gi 157823950  139 SIR 141
Cdd:PHA03270   96 QIR 98
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 17-178 2.22e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 2.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   17 DGSASGPPPGR-PVGASSGPTrrpssppppsCSSLRLPARRHRSPSGHRGRWASPSPPRGRRGSPSPPRGRRASPSPtrg 95
Cdd:PHA03307  109 PGPSSPDPPPPtPPPASPPPS----------PAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALP--- 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   96 rraSPSPPRGRRGSPSPPRARRGSPSPPRsRRHYPPGLGGFRGSIRGESRADFARDGRGDHPGGGGGSRRRSPGLCSDSS 175
Cdd:PHA03307  176 ---LSSPEETARAPSSPPAEPPPSTPPAA-ASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGP 251


                  ...
gi 157823950  176 LEE 178
Cdd:PHA03307  252 ENE 254
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 18-147 3.44e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.75  E-value: 3.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   18 GSASGPPPGRPVGASSGPTRRPSSppppscsslrlPARRHRSPSGHRGRWASPSPPRGRRGSPSPPRGRRASPSPTRGRR 97
Cdd:PRK07764  619 AAPAAPAAPAPAGAAAAPAEASAA-----------PAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP 687

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 157823950   98 ASPSPPRGRRGSPSPPRARRGSPSPPRSRRHYPPGLGGFRGSIRGESRAD 147
Cdd:PRK07764  688 AAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 24-131 3.47e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.93  E-value: 3.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   24 PPGRPVGASSGPTRRPSSPPPPSCSSLRLPARRHRSPSGHRGRWASPSPPRGRRGSPSPPR---------GRRASPSPTR 94
Cdd:PHA03307  777 PAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARppgaaarppPARSSESSKS 856

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 157823950   95 GRRASPSPPRGRRG----SPSPPRARRGSPSPPRSRRHYPP 131
Cdd:PHA03307  857 KPAAAGGRARGKNGrrrpRPPEPRARPGAAAPPKAAAAAPP 897
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
899-1036 3.55e-04

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 44.90  E-value: 3.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  899 KKISDEKNRASQKQKVIEEREKLK-TEQEARQKKMfylttELERLHKQqgemLRKKRREKDGHKDpLLMEVSRLQDSIMK 977
Cdd:COG1340   140 EKIKELEKELEKAKKALEKNEKLKeLRAELKELRK-----EAEEIHKK----IKELAEEAQELHE-EMIELYKEADELRK 209

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157823950  978 DIAELHKETEEAEKKQSELDKVAQILGIDI--FDKSLKSSNDSKESTEKPEKEKSKSPEKE 1036
Cdd:COG1340   210 EADELHKEIVEAQEKADELHEEIIELQKELreLRKELKKLRKKQRALKREKEKEELEEKAE 270
QWRF pfam04484
QWRF family; AUG8 belongs to the plant QWRF motif-containing protein family, which also ...
 18-150 3.57e-04

QWRF family; AUG8 belongs to the plant QWRF motif-containing protein family, which also includes microtubule-associated protein ENDOSPERM DEFECTIVE 1 and SNOWY COTYLEDON 3. AUG8 binds the microtubule plus-end and participates in the reorientation of microtubules in hypocotyls (the stem of a germinating seedling).


Pssm-ID: 461327 [Multi-domain]  Cd Length: 304  Bit Score: 45.04  E-value: 3.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950    18 GSASGPPPGRPVGA-----SSGPTRRPSSPPPPSCSSLRLPARRHRSPSghrgrwASPSPPRGRRGS-PSPPRGRRASPS 91
Cdd:pfam04484    5 GSSSGTPRGIVVPArflqeTSSRLRRLSDPGSPTSSSSKVPSKKSRLDG------APSSSPRSRANSrASPGRGSSRALS 78

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 157823950    92 PTRGRRASPSPPrgrRGSPSPPRARRGSPSPPRSrrhyPPGLGGFRGSIRGESrADFAR 150
Cdd:pfam04484   79 PSKLGSSTSSPS---RGLPSPSRPRSSSSSKASS----SAGSGKGVPSVLSFG-ADVRR 129
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 16-135 5.26e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.36  E-value: 5.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   16 KDGSASGPPPGRPVGASSGPTRRPSSPPPPSCSSLRLPARRHRSPSGHRGR---WASPSPPRGRRGSPSPPRGRRASPSP 92
Cdd:PRK07764  624 PAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGgaaPAAPPPAPAPAAPAAPAGAAPAQPAP 703

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 157823950   93 TRGRRASPSPPRGRRGSPSPPRARRGSPS-------PPRSRRHYPPGLGG 135
Cdd:PRK07764  704 APAATPPAGQADDPAAQPPQAAQGASAPSpaaddpvPLPPEPDDPPDPAG 753
PHA03247 PHA03247
large tegument protein UL36; Provisional
 19-139 8.70e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 8.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   19 SASGPPPGRPVGASSGPTRRPSSPPPPSCSSLRLPARRHRSPSGHRGRWASPSPPRGRRGSPSPPRGRRASPSPTRGRRA 98
Cdd:PHA03247 2595 SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAA 2674

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 157823950   99 SPS-PPRGRR--------GS-------PSPPRARRGSPSPPRSRRHYPPGLGGFRGS 139
Cdd:PHA03247 2675 QASsPPQRPRrraarptvGSltsladpPPPPPTPEPAPHALVSATPLPPGPAAARQA 2731
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 891-1034 9.78e-04

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 44.43  E-value: 9.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  891 PSLIKYNPKKISDEKNRASQkqkVIEEREKLKTEQEARQKKMFYLTTELERLHKQqgemLRKKRREKDGHKDPLLmevSR 970
Cdd:PRK00409  501 ENIIEEAKKLIGEDKEKLNE---LIASLEELERELEQKAEEAEALLKEAEKLKEE----LEEKKEKLQEEEDKLL---EE 570

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  971 LQDSIMKDIAELHKETEEAEKKQSELDK------VAQILgIDIfDKSLKSSNDSKESTEKPEKEKSKSPE 1034
Cdd:PRK00409  571 AEKEAQQAIKEAKKEADEIIKELRQLQKggyasvKAHEL-IEA-RKRLNKANEKKEKKKKKQKEKQEELK 638
PHA03247 PHA03247
large tegument protein UL36; Provisional
 23-122 1.08e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   23 PPPGRPVG---ASSGPTRR---PSSPPPPSCSSLRLPARRHRSPSGHRGRWASPSPPRGRRGSPSPPRGRRASPSPTRGR 96
Cdd:PHA03247 2846 PPPSLPLGgsvAPGGDVRRrppSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925

                          90       100
                  ....*....|....*....|....*.
gi 157823950   97 RASPSPPRGRRGSPSPPRARRGSPSP 122
Cdd:PHA03247 2926 PPQPQPPPPPPPRPQPPLAPTTDPAG 2951
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 18-150 1.12e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   18 GSASGPPPGRPVGASSGPTRrpssppppscssLRLPARRHRSPSGHRGRWASPSPPRGR----RGSPSPPRGRRASPSPT 93
Cdd:PHA03307  340 AVSPGPSPSRSPSPSRPPPP------------ADPSSPRKRPRPSRAPSSPAASAGRPTrrraRAAVAGRARRRDATGRF 407

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157823950   94 RGRRASPSPPRGRRGSPSPPRARR----------GSPSPPRSRRHYpPGLGGFRGSIRGESRADFAR 150
Cdd:PHA03307  408 PAGRPRPSPLDAGAASGAFYARYPlltpsgepwpGSPPPPPGRVRY-GGLGDSRPGLWDAPEVREAA 473
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 899-1031 1.38e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 43.86  E-value: 1.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   899 KKISDEKNRASQKQKVIEER-EKLKTEQEArqkkmfyLTTELERLHKQQGEMLRKKRREKDGHKDPLLMEVsrlQDSIMK 977
Cdd:TIGR04523  499 KKLNEEKKELEEKVKDLTKKiSSLKEKIEK-------LESEKKEKESKISDLEDELNKDDFELKKENLEKE---IDEKNK 568

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157823950   978 DIAELHKETEEAEKKQSELDKVAQILGIDIFD-------KSLKSSNDSKEsTEKPEKEKSK 1031
Cdd:TIGR04523  569 EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDlikeieeKEKKISSLEKE-LEKAKKENEK 628
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
905-999 1.63e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 43.90  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  905 KNRASQKQKVIEEREKLKTEQEARQKKMFYLTTELERLHKQQGEMLRK----KRREKDGHKDPLLMEVSRLQ-------- 972
Cdd:PRK03918  608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKyseeEYEELREEYLELSRELAGLRaeleelek 687

                          90       100
                  ....*....|....*....|....*....
gi 157823950  973 --DSIMKDIAELHKETEEAEKKQSELDKV 999
Cdd:PRK03918  688 rrEEIKKTLEKLKEELEEREKAKKELEKL 716
Herpes_LP pfam03363
Herpesvirus leader protein;
20-132 2.25e-03

Herpesvirus leader protein;


Pssm-ID: 281372 [Multi-domain]  Cd Length: 174  Bit Score: 41.24  E-value: 2.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950    20 ASGPPPGRPVGASSGPtrrpssppppsCSSLRLPARRHRSPSGHRGrwaSPSPPRGRR------------GSPSPPRGRR 87
Cdd:pfam03363    5 SEGPGPARPGPPGIGP-----------EGPLGQLLRRHRSPSPTRG---GQEPRRVRRrvlvqqeeevvsGSPSGPRGDR 70

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 157823950    88 AS-PSPTRG----------------RRASPSPPRGRRgspSPPRARR------------GSPSPPRSRRHYPPG 132
Cdd:pfam03363   71 SEgPGPARPgppgigpegplgqllrRHRSPSPTRGGQ---EPRRVRRrvlvqqeeevvsGSPSGPLRPRPQPPA 141
Gag_spuma pfam03276
Spumavirus gag protein;
54-145 2.41e-03

Spumavirus gag protein;


Pssm-ID: 460872 [Multi-domain]  Cd Length: 614  Bit Score: 43.20  E-value: 2.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950    54 ARRHRSPSGHRGRWASPSPPRGRRGSPSPPRGRrasPSPTRGRRASPSPPRGRRGSPSPPRARRGspsppRSRRHYPPGL 133
Cdd:pfam03276  475 AARGPQIRASRGPGPGPSAGEGRGGPANEGRGG---PCNAGGGNDCGANGQNDGGENIQNGGQEL-----RSQGGQNLRS 546

                           90
                   ....*....|..
gi 157823950   134 GGFRGSIRGESR 145
Cdd:pfam03276  547 GGGQGQRWGEGR 558
PTZ00121 PTZ00121
MAEBL; Provisional
 895-1371 2.84e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.21  E-value: 2.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  895 KYNPKKISDEKNRASQKQKVIEEREK---LKTEQEARQKKMFYLTTELERlhKQQGEMLRKKRREKDGHKDPLLMEVSRL 971
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKadeAKKKAEEDKKKADELKKAAAA--KKKADEAKKKAEEKKKADEAKKKAEEAK 1444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  972 QDSIMKDIAELHKETEEAEKKQSELDKVaqilgiDIFDKSLKSSNDSKESTEKPEKEKSKSPEKELSPSNSSSSNKESKM 1051
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKA------DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950 1052 NEKSCIKSPSSTESLQPT--------VKQSDQPVAAYEYYDAgshwckdcnttcgtmfdfftHMHNKKHTQTLDPYNRPW 1123
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKAdeakkaeeKKKADELKKAEELKKA--------------------EEKKKAEEAKKAEEDKNM 1578

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950 1124 ASKTQSEAKQDTVKRTDKITvpaKGSEFLIPVTGFYCQLCEE--FLGDPISGEQHVKGHQHNENYKKYVE----ENPLYE 1197
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVM---KLYEEEKKMKAEEAKKAEEakIKAEELKKAEEEKKKVEQLKKKEAEEkkkaEELKKA 1655

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950 1198 ERRNLDRQAGLAVVLETERRRQNELKR----KLNEKPKEEKIEKKARIVREVKEDDKAPGELEEQL--SEDGSAPEKGEV 1271
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKaeedEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELkkAEEENKIKAEEA 1735

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950 1272 KGNASLRPQVKEEVKKEPSVASIAASFGKFSWKKPEKEEEKgsvvtpgapKEDTVETSKDRDDGKAEVGKAKPIK-IKLS 1350
Cdd:PTZ00121 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE---------KEAVIEEELDEEDEKRRMEVDKKIKdIFDN 1806

                         490       500
                  ....*....|....*....|.
gi 157823950 1351 GKTVIAHTSPWTPVVTTSTQT 1371
Cdd:PTZ00121 1807 FANIIEGGKEGNLVINDSKEM 1827
PTZ00121 PTZ00121
MAEBL; Provisional
 895-1034 2.93e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.21  E-value: 2.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  895 KYNPKKISDEKNRASQKQKVIEEREKLKTEQEARQKKmfylttELERLHKQQGEMLRKKRREKDgHKDpllmEVSRLQDS 974
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAK------KKAEEAKKKADAAKKKAEEAK-KAA----EAAKAEAE 1353

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157823950  975 IMKDIAELHKETEEA-EKKQSELDKVAqilgiDIFDKSLKSSNDSKESTEKPEKEKSKSPE 1034
Cdd:PTZ00121 1354 AAADEAEAAEEKAEAaEKKKEEAKKKA-----DAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
PHA03201 PHA03201
uracil DNA glycosylase; Provisional
 64-133 3.40e-03

uracil DNA glycosylase; Provisional


Pssm-ID: 165468  Cd Length: 318  Bit Score: 41.80  E-value: 3.40e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   64 RGRWASPSPPRgrrgSPSPPRgRRASPSPTRGRRASPSPPRGRrGSPSPPRARRGSPSPPRSRRHYPPGL 133
Cdd:PHA03201    3 RARSRSPSPPR----RPSPPR-PTPPRSPDASPEETPPSPPGP-GAEPPPGRAAGPAAPRRRPRGCPAGV 66
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 18-151 3.67e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.85  E-value: 3.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   18 GSASGPPPGrPVGASSGPTRRPSSPPPPSCSSLRLPARRHR----SPSGHRGRWASPSP------------PRGRRGSPS 81
Cdd:PHA03307   66 EPPTGPPPG-PGTEAPANESRSTPTWSLSTLAPASPAREGSptppGPSSPDPPPPTPPPaspppspapdlsEMLRPVGSP 144

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157823950   82 PPRGRRASPSPTRGRRASPSPPRGRRG----SPSPPRARRGSPSPPRSRR-HYPPGLGGFRGSIRGESRADFARD 151
Cdd:PHA03307  145 GPPPAASPPAAGASPAAVASDAASSRQaalpLSSPEETARAPSSPPAEPPpSTPPAAASPRPPRRSSPISASASS 219
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
899-1033 5.69e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.97  E-value: 5.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  899 KKISDEKNRASQKQKVIEEREKLKTEQEARQKKMFYLTTELERLHK--QQGEMLRKKRREKDGHKdpllmevSRLQDsim 976
Cdd:PRK03918  314 KRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEErhELYEEAKAKKEELERLK-------KRLTG--- 383

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 157823950  977 KDIAELHKETEEAEKKQSELDKvaQILGIDIFDKSLKS-SNDSKESTEKPEKEKSKSP 1033
Cdd:PRK03918  384 LTPEKLEKELEELEKAKEEIEE--EISKITARIGELKKeIKELKKAIEELKKAKGKCP 439
PTZ00121 PTZ00121
MAEBL; Provisional
 899-1036 6.80e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.05  E-value: 6.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  899 KKISDEKNRASQKQKVIEER--EKLKTEQEARQKKMFYLTTELERLHKQQGEMLRKKRREKDGHKDPLLMEVSRLQDsiM 976
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAEEERnnEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADE--A 1307

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950  977 KDIAELHKETEEAEKKQSELDKVAQILGIDIFDKslKSSNDSKESTEKPEKEKSKSPEKE 1036
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA--KKAAEAAKAEAEAAADEAEAAEEK 1365
PHA03247 PHA03247
large tegument protein UL36; Provisional
 18-131 8.11e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 8.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   18 GSASGPPPGRPVGASSGP-------TRRPSSPPPPSCSSLRLPARRHRSPSGHRGRWASPSPPrGRRGSPSPPRGRRASP 90
Cdd:PHA03247 2642 PPPTVPPPERPRDDPAPGrvsrprrARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPP-PPTPEPAPHALVSATP 2720

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 157823950   91 SPT---RGRRASPSPPRGRRGSPSP----------PRARR------GSPSPPRSRRHYPP 131
Cdd:PHA03247 2721 LPPgpaAARQASPALPAAPAPPAVPagpatpggpaRPARPpttagpPAPAPPAAPAAGPP 2780
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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