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Conserved domains on  [gi|38488708|ref|NP_942108|]
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zinc fingers and homeoboxes protein 3 [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf_C2H2_ZHX pfam18387
Zinc-fingers and homeoboxes C2H2 finger domain; This is a C2H2 zinc-finger domain found in ZHX ...
 96-148 1.93e-25

Zinc-fingers and homeoboxes C2H2 finger domain; This is a C2H2 zinc-finger domain found in ZHX proteins such as ZHX1. ZHXs are multidomain proteins comprising two C2H2 zinc finger motifs and five homeodomains. Both homeodomains and zinc fingers are short protein modules involved in protein-DNA and/or protein-protein interactions; they are frequently associated with roles in transcriptional regulation. All members of the ZHX family are reported to be able to form both homo- and heterodimers via the region containing homeodomain 1. ZHX1 is a transcriptional repressor which is ubiquitously expressed. It interacts with nuclear factor Y subunit A (NFYA) and DNA methyl transferase 3B (DNMT3B) for its repression activity. Changes in expression profiles of rat ZHX1 ortholog have been associated with glomerular disease. In addition to the five homeodomains, ZHX1, which also contains of two N terminal C2H2 zincfingers forms homodimers via homeodomain and can also form heterodimers with ZHX3.


:

Pssm-ID: 465737  Cd Length: 53  Bit Score: 99.71  E-value: 1.93e-25
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 38488708     96 MDPCFLCVSCGKSSAKFEGLALHNARVHPSTITTTLQLKKKDNRVIVEQSLCV 148
Cdd:pfam18387    1 ADPSFVCVECGFLAKKFEGLALHNAESHPGETNFTLQVVKRDNQTTVEQSLVD 53
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 607-660 6.27e-12

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


:

Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 61.50  E-value: 6.27e-12
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....
gi 38488708     607 NKTKKSQEQLSALKESFLISQFPNQEEVDRLINLTGLSVREVRKWFSDRRYHFR 660
Cdd:smart00389    4 KRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 742-787 3.03e-09

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


:

Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 53.79  E-value: 3.03e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 38488708     742 PHQVRALEASFTQEPDPTSEEVDRLRAETKMTRREIHGWFAERRRR 787
Cdd:smart00389   10 PEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAK 55
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 895-952 4.01e-09

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


:

Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 53.40  E-value: 4.01e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 38488708  895 QYRGKKTPEQLHLLKQVFARTHWPSSPQYNELITKTGLPRPEVVRWFGDCRYVLKNGQ 952
Cdd:cd00086    2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 299-346 6.68e-08

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


:

Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 49.94  E-value: 6.68e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 38488708     299 SMDNSSFLKTSFSKFPYPTKAELCYLTVVTKYPEEQIKIWFTAQRLKQ 346
Cdd:smart00389    9 TPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKW 56
 
Name Accession Description Interval E-value
zf_C2H2_ZHX pfam18387
Zinc-fingers and homeoboxes C2H2 finger domain; This is a C2H2 zinc-finger domain found in ZHX ...
 96-148 1.93e-25

Zinc-fingers and homeoboxes C2H2 finger domain; This is a C2H2 zinc-finger domain found in ZHX proteins such as ZHX1. ZHXs are multidomain proteins comprising two C2H2 zinc finger motifs and five homeodomains. Both homeodomains and zinc fingers are short protein modules involved in protein-DNA and/or protein-protein interactions; they are frequently associated with roles in transcriptional regulation. All members of the ZHX family are reported to be able to form both homo- and heterodimers via the region containing homeodomain 1. ZHX1 is a transcriptional repressor which is ubiquitously expressed. It interacts with nuclear factor Y subunit A (NFYA) and DNA methyl transferase 3B (DNMT3B) for its repression activity. Changes in expression profiles of rat ZHX1 ortholog have been associated with glomerular disease. In addition to the five homeodomains, ZHX1, which also contains of two N terminal C2H2 zincfingers forms homodimers via homeodomain and can also form heterodimers with ZHX3.


Pssm-ID: 465737  Cd Length: 53  Bit Score: 99.71  E-value: 1.93e-25
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 38488708     96 MDPCFLCVSCGKSSAKFEGLALHNARVHPSTITTTLQLKKKDNRVIVEQSLCV 148
Cdd:pfam18387    1 ADPSFVCVECGFLAKKFEGLALHNAESHPGETNFTLQVVKRDNQTTVEQSLVD 53
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 607-660 6.27e-12

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 61.50  E-value: 6.27e-12
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....
gi 38488708     607 NKTKKSQEQLSALKESFLISQFPNQEEVDRLINLTGLSVREVRKWFSDRRYHFR 660
Cdd:smart00389    4 KRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 608-663 7.39e-12

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 61.49  E-value: 7.39e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 38488708  608 KTKKSQEQLSALKESFLISQFPNQEEVDRLINLTGLSVREVRKWFSDRRYHFRNLK 663
Cdd:cd00086    4 RTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 742-787 3.03e-09

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 53.79  E-value: 3.03e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 38488708     742 PHQVRALEASFTQEPDPTSEEVDRLRAETKMTRREIHGWFAERRRR 787
Cdd:smart00389   10 PEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAK 55
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 895-952 4.01e-09

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 53.40  E-value: 4.01e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 38488708  895 QYRGKKTPEQLHLLKQVFARTHWPSSPQYNELITKTGLPRPEVVRWFGDCRYVLKNGQ 952
Cdd:cd00086    2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 896-949 6.01e-09

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 53.02  E-value: 6.01e-09
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....
gi 38488708     896 YRGKKTPEQLHLLKQVFARTHWPSSPQYNELITKTGLPRPEVVRWFGDCRYVLK 949
Cdd:smart00389    4 KRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 742-787 2.53e-08

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 51.48  E-value: 2.53e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 38488708  742 PHQVRALEASFTQEPDPTSEEVDRLRAETKMTRREIHGWFAERRRR 787
Cdd:cd00086    9 PEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAK 54
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 299-346 6.68e-08

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 49.94  E-value: 6.68e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 38488708     299 SMDNSSFLKTSFSKFPYPTKAELCYLTVVTKYPEEQIKIWFTAQRLKQ 346
Cdd:smart00389    9 TPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKW 56
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 299-350 1.15e-07

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 49.55  E-value: 1.15e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 38488708  299 SMDNSSFLKTSFSKFPYPTKAELCYLTVVTKYPEEQIKIWFTAQRLKQGISW 350
Cdd:cd00086    8 TPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
Homeodomain pfam00046
Homeodomain;
612-661 2.82e-06

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 45.57  E-value: 2.82e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 38488708    612 SQEQLSALKESFLISQFPNQEEVDRLINLTGLSVREVRKWFSDRRYHFRN 661
Cdd:pfam00046    8 TPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
608-656 6.44e-05

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 44.35  E-value: 6.44e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 38488708  608 KTKKSQEQLSALKESFLISQFPNQEEVDRLINLTGLSVREVRKWFSDRR 656
Cdd:COG5576   55 RRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKR 103
Homeodomain pfam00046
Homeodomain;
742-787 2.39e-04

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 40.18  E-value: 2.39e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 38488708    742 PHQVRALEASFTQEPDPTSEEVDRLRAETKMTRREIHGWFAERRRR 787
Cdd:pfam00046    9 PEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAK 54
Homeodomain pfam00046
Homeodomain;
306-346 7.05e-04

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 38.64  E-value: 7.05e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 38488708    306 LKTSFSKFPYPTKAELCYLTVVTKYPEEQIKIWFTAQRLKQ 346
Cdd:pfam00046   15 LEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKW 55
Homeodomain pfam00046
Homeodomain;
901-941 1.50e-03

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 37.86  E-value: 1.50e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 38488708    901 TPEQLHLLKQVFARTHWPSSPQYNELITKTGLPrPEVVR-WF 941
Cdd:pfam00046    8 TPEQLEELEKEFQENPYPSAEEREELAAQLGLT-ERQVKvWF 48
 
Name Accession Description Interval E-value
zf_C2H2_ZHX pfam18387
Zinc-fingers and homeoboxes C2H2 finger domain; This is a C2H2 zinc-finger domain found in ZHX ...
 96-148 1.93e-25

Zinc-fingers and homeoboxes C2H2 finger domain; This is a C2H2 zinc-finger domain found in ZHX proteins such as ZHX1. ZHXs are multidomain proteins comprising two C2H2 zinc finger motifs and five homeodomains. Both homeodomains and zinc fingers are short protein modules involved in protein-DNA and/or protein-protein interactions; they are frequently associated with roles in transcriptional regulation. All members of the ZHX family are reported to be able to form both homo- and heterodimers via the region containing homeodomain 1. ZHX1 is a transcriptional repressor which is ubiquitously expressed. It interacts with nuclear factor Y subunit A (NFYA) and DNA methyl transferase 3B (DNMT3B) for its repression activity. Changes in expression profiles of rat ZHX1 ortholog have been associated with glomerular disease. In addition to the five homeodomains, ZHX1, which also contains of two N terminal C2H2 zincfingers forms homodimers via homeodomain and can also form heterodimers with ZHX3.


Pssm-ID: 465737  Cd Length: 53  Bit Score: 99.71  E-value: 1.93e-25
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 38488708     96 MDPCFLCVSCGKSSAKFEGLALHNARVHPSTITTTLQLKKKDNRVIVEQSLCV 148
Cdd:pfam18387    1 ADPSFVCVECGFLAKKFEGLALHNAESHPGETNFTLQVVKRDNQTTVEQSLVD 53
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 607-660 6.27e-12

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 61.50  E-value: 6.27e-12
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....
gi 38488708     607 NKTKKSQEQLSALKESFLISQFPNQEEVDRLINLTGLSVREVRKWFSDRRYHFR 660
Cdd:smart00389    4 KRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 608-663 7.39e-12

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 61.49  E-value: 7.39e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 38488708  608 KTKKSQEQLSALKESFLISQFPNQEEVDRLINLTGLSVREVRKWFSDRRYHFRNLK 663
Cdd:cd00086    4 RTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 742-787 3.03e-09

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 53.79  E-value: 3.03e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 38488708     742 PHQVRALEASFTQEPDPTSEEVDRLRAETKMTRREIHGWFAERRRR 787
Cdd:smart00389   10 PEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAK 55
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 895-952 4.01e-09

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 53.40  E-value: 4.01e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 38488708  895 QYRGKKTPEQLHLLKQVFARTHWPSSPQYNELITKTGLPRPEVVRWFGDCRYVLKNGQ 952
Cdd:cd00086    2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 896-949 6.01e-09

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 53.02  E-value: 6.01e-09
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....
gi 38488708     896 YRGKKTPEQLHLLKQVFARTHWPSSPQYNELITKTGLPRPEVVRWFGDCRYVLK 949
Cdd:smart00389    4 KRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 742-787 2.53e-08

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 51.48  E-value: 2.53e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 38488708  742 PHQVRALEASFTQEPDPTSEEVDRLRAETKMTRREIHGWFAERRRR 787
Cdd:cd00086    9 PEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAK 54
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 299-346 6.68e-08

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 49.94  E-value: 6.68e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 38488708     299 SMDNSSFLKTSFSKFPYPTKAELCYLTVVTKYPEEQIKIWFTAQRLKQ 346
Cdd:smart00389    9 TPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKW 56
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 299-350 1.15e-07

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 49.55  E-value: 1.15e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 38488708  299 SMDNSSFLKTSFSKFPYPTKAELCYLTVVTKYPEEQIKIWFTAQRLKQGISW 350
Cdd:cd00086    8 TPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
Homeodomain pfam00046
Homeodomain;
612-661 2.82e-06

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 45.57  E-value: 2.82e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 38488708    612 SQEQLSALKESFLISQFPNQEEVDRLINLTGLSVREVRKWFSDRRYHFRN 661
Cdd:pfam00046    8 TPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
608-656 6.44e-05

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 44.35  E-value: 6.44e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 38488708  608 KTKKSQEQLSALKESFLISQFPNQEEVDRLINLTGLSVREVRKWFSDRR 656
Cdd:COG5576   55 RRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKR 103
Homeodomain pfam00046
Homeodomain;
742-787 2.39e-04

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 40.18  E-value: 2.39e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 38488708    742 PHQVRALEASFTQEPDPTSEEVDRLRAETKMTRREIHGWFAERRRR 787
Cdd:pfam00046    9 PEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAK 54
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 756-787 3.12e-04

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 39.04  E-value: 3.12e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 38488708    756 PDPTSEEVDRLRAETKMTRREIHGWFAERRRR 787
Cdd:pfam05920    8 PYPSEEEKAELAKETGLSRKQISNWFINARRR 39
Homeodomain pfam00046
Homeodomain;
306-346 7.05e-04

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 38.64  E-value: 7.05e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 38488708    306 LKTSFSKFPYPTKAELCYLTVVTKYPEEQIKIWFTAQRLKQ 346
Cdd:pfam00046   15 LEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKW 55
Homeodomain pfam00046
Homeodomain;
901-941 1.50e-03

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 37.86  E-value: 1.50e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 38488708    901 TPEQLHLLKQVFARTHWPSSPQYNELITKTGLPrPEVVR-WF 941
Cdd:pfam00046    8 TPEQLEELEKEFQENPYPSAEEREELAAQLGLT-ERQVKvWF 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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