|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
10-318 |
5.82e-19 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 86.51 E-value: 5.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 10 SEKAELQELNARLYDYVCRVRELERENLLLEEELRSRLSREDRW-AEDQALYAEEARSLRQQLDELNWSTALAEGERDAL 88
Cdd:pfam00038 1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEpSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 89 RRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRDLDAAHERQVRDLRARAASLTMHFRA 168
Cdd:pfam00038 81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVEM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 169 RATSPAAPPPRLRDVHDSYALLVAESWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLR 248
Cdd:pfam00038 161 DAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQK 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 249 ARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLAMADRLRDYQELLQVKTGLSLEVATYRALLEGE 318
Cdd:pfam00038 241 ASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGE 310
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
55-316 |
6.04e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 6.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 55 EDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALL 134
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 135 GRLETERRDLDAAHERQVRDLRARAASLTMhfraratspaappprlrdvhdsyALLVAESWRESVQLYEDEVRELEQALR 214
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEE-----------------------AEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 215 RGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLAMADRLRDY 294
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260
....*....|....*....|..
gi 153792711 295 QELLQVKTGLSLEVATYRALLE 316
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEA 477
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
5-322 |
3.04e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 3.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 5 RLQTGSEKAELQELNARLYdyvcrvrelerenllleeelrSRLSREDRWAEDQALYAEEARSLRQQLDELNWSTALAEGE 84
Cdd:COG1196 273 RLELEELELELEEAQAEEY---------------------ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 85 RDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRDLDAAHERQVRDLRARAASLTM 164
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 165 HFRARATSPAAppprlrdvhdsyallvAESWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALEL 244
Cdd:COG1196 412 LLERLERLEEE----------------LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 153792711 245 EQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLAMADRL-RDYQELLQVKTGLSLEVATYRALLEGESNPE 322
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLaGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
57-323 |
4.08e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 4.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 57 QALYAEEARSLRQQLDELNWSTALA--EGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALL 134
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELArlEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 135 GRLETERRDLDAAHERQVRDLRARAASLTMHFRARATspaappprlrdvhdsyALLVAESWRESVQLYEDEVRELEQALR 214
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE----------------ALRAAAELAAQLEELEEAEEALLERLE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 215 RGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREeygmQAEERQRVIDSLEDEKEALTLAMADRLRDY 294
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE----LLAELLEEAALLEAALAELLEELAEAAARL 493
|
250 260
....*....|....*....|....*....
gi 153792711 295 QELLQVKTGLSLEVATYRALLEGESNPEI 323
Cdd:COG1196 494 LLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
54-348 |
3.55e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 3.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 54 AEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLEL------------QREGVEAGTARSRLDAELGAQRRELE 121
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAaarllllleaeaDYEGFLEGVKAALLLAGLRGLAGAVA 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 122 EALG----ARAALEALLGRLETE--RRDLDAAHERQVRDLRARAASLT------MHFRARATSPAAPPPRLRDVHDSYAL 189
Cdd:COG1196 528 VLIGveaaYEAALEAALAAALQNivVEDDEVAAAAIEYLKAAKAGRATflpldkIRARAALAAALARGAIGAAVDLVASD 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 190 LVAESWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEygmQAEER 269
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA---ELEEL 684
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 153792711 270 QRVIDSLEDEKEALTLAMADRLRDYQELLQVKTGLSLEVATYRALLEGESNPEILIWTENIENVPQDGSERHESDPQLD 348
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
54-299 |
4.09e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 4.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 54 AEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEAL 133
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 134 LGRLETERRDLDAAHERQVRDLRARAASLTMHFRARATspaappprlrdvhdsyALLVAESWRESVQLYEDEVRELEQAL 213
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN----------------LRERLESLERRIAATERRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 214 RRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRV---IDSLEDEKEALTLAMADR 290
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELeskRSELRRELEELREKLAQL 927
|
....*....
gi 153792711 291 LRDYQELLQ 299
Cdd:TIGR02168 928 ELRLEGLEV 936
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
54-319 |
7.04e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 7.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 54 AEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELlelqregveagtarSRLDAELGAQRRELEEALGARAALEAL 133
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL--------------AALERRIAALARRIRALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 134 LGRLETERRDLDAAHERQVRDLRARAASLTMHFRaratspaAPPPRLrdvhdsyaLLVAESWRESV---QLYEDEVRELE 210
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELLRALYRLGR-------QPPLAL--------LLSPEDFLDAVrrlQYLKYLAPARR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 211 QALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELlrmreeygmqaEERQRVIDSLEDEKEALTLAMADR 290
Cdd:COG4942 150 EQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALK-----------AERQKLLARLEKELAELAAELAEL 218
|
250 260
....*....|....*....|....*....
gi 153792711 291 LRDYQELLQVKTGLSLEVATYRALLEGES 319
Cdd:COG4942 219 QQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
58-316 |
7.22e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 7.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 58 ALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEalgaraaLEALLGRL 137
Cdd:TIGR02168 228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA-------LANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 138 ETERRDLDAAHERQVRDLRARAASLTMHFRARatspaappprlrdvhDSYALLVAEsWRESVQLYEDEVRELEQALRRGQ 217
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKL---------------DELAEELAE-LEEKLEELKEELESLEAELEELE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 218 ESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLAMADRL-RDYQE 296
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELqAELEE 444
|
250 260
....*....|....*....|
gi 153792711 297 LLQVKTGLSLEVATYRALLE 316
Cdd:TIGR02168 445 LEEELEELQEELERLEEALE 464
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
12-299 |
9.68e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 9.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 12 KAELQELNARLYdyVCRVRELERENLLLEEELRSRLSREDRWAEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRE 91
Cdd:COG1196 219 KEELKELEAELL--LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 92 LLELQREGVEAGTARSRLDAELGAQRRELEE----ALGARAALEALLGRLETERRDLDAAhERQVRDLRARAASLTMHFR 167
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAEleeeLEELEEELEELEEELEEAEEELEEA-EAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 168 ARATSpaappprlrdvhdsyallvAESWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQL 247
Cdd:COG1196 376 EAEEE-------------------LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 153792711 248 RARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLAMADRLRDYQELLQ 299
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
60-261 |
1.86e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 60 YAEEARSLRQQLDELN-----WSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALE-AL 133
Cdd:COG4913 260 LAERYAAARERLAELEylraaLRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDR 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 134 LGRLETERRDLDAAHERQVRDLRAraasltmhFRARATSPAAPPPrlrdvhdsyalLVAESWRESVQLYEDEVRELEQAL 213
Cdd:COG4913 340 LEQLEREIERLERELEERERRRAR--------LEALLAALGLPLP-----------ASAEEFAALRAEAAALLEALEEEL 400
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 153792711 214 RRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREE 261
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
5-254 |
1.97e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 5 RLQTGSEKAELQELNARLYDYVCRVRELERENLLLEEELRSRLSREDRWAEDQALYAEEARSLRQQLDELNWSTALAEGE 84
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 85 RDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRDLDAAHERQVRDLRARAASLTm 164
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE- 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 165 hfraratspaapPPRLRDVHDSyallVAESWRESVQLYEdEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALEL 244
Cdd:TIGR02168 432 ------------EAELKELQAE----LEELEEELEELQE-ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
250
....*....|
gi 153792711 245 EQLRARLEDE 254
Cdd:TIGR02168 495 ERLQENLEGF 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
67-289 |
9.40e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 9.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 67 LRQQLDELNWSTALAEgERDALRRELLE-----LQREGVEAGTARSRLDAELGAQRRELE------EALGARaaLEALLG 135
Cdd:TIGR02169 196 KRQQLERLRREREKAE-RYQALLKEKREyegyeLLKEKEALERQKEAIERQLASLEEELEklteeiSELEKR--LEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 136 RLETERRDLDAAHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWResvqlYEDEVRELEQALRR 215
Cdd:TIGR02169 273 LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK-----LLAEIEELEREIEE 347
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 153792711 216 GQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEER---QRVIDSLEDEKEALTLAMAD 289
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREInelKRELDRLQEELQRLSEELAD 424
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
58-262 |
1.31e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 58 ALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQR------EGVEAGTARSRLdAELGAQRRELEEALGARAALE 131
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswDEIDVASAEREI-AELEAELERLDASSDDLAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 132 ALLGRLETERRDLdaahERQVRDLRARAAsltmhfraratspaapppRLRDVHDSYALLVAESWRESVQLYEDEVRELEQ 211
Cdd:COG4913 692 EQLEELEAELEEL----EEELDELKGEIG------------------RLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 153792711 212 ALrrgqESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEY 262
Cdd:COG4913 750 LL----EERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAF 796
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
51-283 |
3.62e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 51 DRWAEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLE----LQREGVEAGTARSRLDAELGAQRRELEEALGA 126
Cdd:COG1196 556 DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAavdlVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 127 RAALEALLGRLETERRDLDAAHERQVRDLRARAASLTMHFRARATspaappprlrdvhDSYALLVAESWRESVQLYEDEV 206
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE-------------LEELAERLAEEELELEEALLAE 702
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 153792711 207 RELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEAL 283
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
58-292 |
4.37e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 4.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 58 ALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRL 137
Cdd:TIGR02169 283 DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAEL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 138 ETERRDLdaahERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWRESVQL---------YEDEVRE 208
Cdd:TIGR02169 363 KEELEDL----RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELadlnaaiagIEAKINE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 209 LEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGmQAEERQRVIDSLEDEKEALTLAMA 288
Cdd:TIGR02169 439 LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA-EAEAQARASEERVRGGRAVEEVLK 517
|
....
gi 153792711 289 DRLR 292
Cdd:TIGR02169 518 ASIQ 521
|
|
| FUSC |
pfam04632 |
Fusaric acid resistance protein family; This family includes a conserved region found in two ... |
85-263 |
1.31e-03 |
|
Fusaric acid resistance protein family; This family includes a conserved region found in two proteins associated with fusaric acid resistance, from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.
Pssm-ID: 428044 [Multi-domain] Cd Length: 655 Bit Score: 40.73 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 85 RDALRRELLELQREGVEAgtARSRLDAELGAQRRE--LEEALGARAALEALLGRLETERRDLdAAHERQVRDLRARAASL 162
Cdd:pfam04632 154 GPALRARLRARLRDALRL--AAAALAGAPGAEAFEaaRLRLAADILALEALRSHAAFESPRG-RARARALRRLLARMLAL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 163 TMHFRA----RATSPAAPPPRLRDVHDSYALLVAESWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALR 238
Cdd:pfam04632 231 LPRLRSlarlLARLRTEGAGTVPELAALLDELAAWEAALAAEALQAALAALRARLRALRPALPLDFDTAAELLARLADLL 310
|
170 180
....*....|....*....|....*
gi 153792711 239 NQALELEQLRARLEDELLRMREEYG 263
Cdd:pfam04632 311 AELAEALASCRALRHPIAQGARPAR 335
|
|
| DUF3450 |
pfam11932 |
Protein of unknown function (DUF3450); This family of proteins are functionally ... |
193-316 |
4.37e-03 |
|
Protein of unknown function (DUF3450); This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length.
Pssm-ID: 432198 [Multi-domain] Cd Length: 238 Bit Score: 38.37 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 193 ESWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYG--------M 264
Cdd:pfam11932 37 DKWDDEKQELLAEYRALKAELESLEVYNRQLERLVASQEQEIASLERQIEEIERTERELVPLMLKMLDRLEqfvaldlpF 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 153792711 265 QAEERQRVIDSLEDEKEALTLAMADRLRDYQELLQVKTGLSLEVATYRALLE 316
Cdd:pfam11932 117 LLEERQARLARLRELMDDADVSLAEKYRRILEAYQVEAEYGRTIEVYQGELE 168
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
51-215 |
4.47e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.13 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 51 DRWAEDQALYAEEARSLRQQLDELNWSTALAEGERD--ALRRELLELQREgveagtaRSRLDA---ELGAQRRELEEALG 125
Cdd:COG4913 627 AEAEERLEALEAELDALQERREALQRLAEYSWDEIDvaSAEREIAELEAE-------LERLDAssdDLAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 126 ARAALEALLGRLETERRDLDAAHER---QVRDLRARAASLTMHFRARATSPAAppPRLRDVH-DSYALLVAESWRESVQL 201
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQaeeELDELQDRLEAAEDLARLELRALLE--ERFAAALgDAVERELRENLEERIDA 777
|
170
....*....|....
gi 153792711 202 YEDEVRELEQALRR 215
Cdd:COG4913 778 LRARLNRAEEELER 791
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3-144 |
5.31e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 38.88 E-value: 5.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 3 SWRLQTGSEKAELQELNARLYDYVCRVRELERENLLLEEELRSRLSREDRWAEDQALYAEEARSLRQQLDELNWSTALAE 82
Cdd:TIGR02168 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 153792711 83 GERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRDL 144
Cdd:TIGR02168 880 NERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
57-162 |
8.12e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 38.02 E-value: 8.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 57 QALYAEEARS--LRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGAR------- 127
Cdd:PRK09039 67 DLLSLERQGNqdLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVellnqqi 146
|
90 100 110
....*....|....*....|....*....|....*
gi 153792711 128 AALEALLGRLETErrdLDAAHERQvRDLRARAASL 162
Cdd:PRK09039 147 AALRRQLAALEAA---LDASEKRD-RESQAKIADL 177
|
|
| HepA |
COG0553 |
Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination, ... |
52-296 |
8.74e-03 |
|
Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination, and repair];
Pssm-ID: 440319 [Multi-domain] Cd Length: 682 Bit Score: 38.28 E-value: 8.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 52 RWAEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALE 131
Cdd:COG0553 1 LLLLLLLLALGALGLLLTELLLLLRLGALLLELVLARELLLLLLAADALLLLALLLLLELLLLLAALLLLALLLLALSAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 132 ALLGRLETERRDLDAAHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWRESVQLYEDEVRELEQ 211
Cdd:COG0553 81 ALLLLRLLLALLLLALLLLLAGLLALALLLLALLGLLLSLALLLLLLLLLLLLLLALLLVLLAALLLLLLLLLLLALLLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 212 ALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQR--VIDSLEDEKEALTLAMAD 289
Cdd:COG0553 161 RLLLLALLLLALEALLLLGLLLALALLALLELALLAAEAELLLLLELLLELELLAEAAVDafRLRRLREALESLPAGLKA 240
|
....*..
gi 153792711 290 RLRDYQE 296
Cdd:COG0553 241 TLRPYQL 247
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
62-255 |
9.67e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 38.10 E-value: 9.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 62 EEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEAllgRLETER 141
Cdd:PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELED---RDEELR 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792711 142 RDLD------AAHERQVRDLRARAASLtmhfRARATSPAAPPPRLRDVHDSYALLVAESwRESVQLYEDEVRELEQALRR 215
Cdd:PRK02224 328 DRLEecrvaaQAHNEEAESLREDADDL----EERAEELREEAAELESELEEAREAVEDR-REEIEELEEEIEELRERFGD 402
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 153792711 216 GQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDEL 255
Cdd:PRK02224 403 APVDLGNAEDFLEELREERDELREREAELEATLRTARERV 442
|
|
| |
