|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
292-474 |
1.16e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 80.44 E-value: 1.16e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 292 IENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMvtdtqdnlvkqaQRQLLLTYNDFAVHCYNHGAYQEGVLLLNKA 371
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------------DPDDAEALYNLGLAYLRLGRYEEALADYEQA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 372 IRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSP 451
Cdd:COG0457 69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG-------RYDEAIEAYERALELDP 141
|
170 180
....*....|....*....|...
gi 225543306 452 QKPQYYLHRAKCRQFLQNTLGAR 474
Cdd:COG0457 142 DDADALYNLGIALEKLGRYEEAL 164
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
72-272 |
2.89e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.20 E-value: 2.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 72 PAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAF 151
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 152 VLYLQGqclyelcDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNF- 230
Cdd:COG0457 85 ALQALG-------RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKl 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 225543306 231 --FQKAKLCYQDLRSALLLDPLHAQAKGLLQKMVDQAKQSLQDA 272
Cdd:COG0457 158 grYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLL 201
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
352-487 |
3.05e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 73.30 E-value: 3.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 352 AVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqq 431
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG---- 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 225543306 432 khrQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDVATVLLLNPEY 487
Cdd:COG4783 87 ---DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
272-461 |
3.49e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.20 E-value: 3.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 272 ASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMvtdtqdnlvkqaQRQLLLTYNDF 351
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------------DPDDAEALNNL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 352 AVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGFCQQ 431
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
170 180 190
....*....|....*....|....*....|
gi 225543306 432 KHRQFQTAEEHFSEAIRHSPQKPQYYLHRA 461
Cdd:COG0457 163 ALELLEKLEAAALAALLAAALGEAALALAA 192
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
78-327 |
4.03e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 76.31 E-value: 4.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 78 YYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQG 157
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 158 qclyelcDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLC 237
Cdd:COG2956 91 -------LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 238 YQDLRSALLLDPLHAQAKGLLqkmvdqakqslqdASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDH 317
Cdd:COG2956 164 IEALEKALKLDPDCARALLLL-------------AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
|
250
....*....|
gi 225543306 318 AVEDFLKAMD 327
Cdd:COG2956 231 ALELLRKALE 240
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
347-488 |
4.29e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.81 E-value: 4.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 347 TYNDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKL 426
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 225543306 427 GfcqqkhrQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDVATVLLLNPEYP 488
Cdd:COG0457 90 G-------RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
102-352 |
3.01e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 73.12 E-value: 3.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 102 LHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcDFQEALCVFLQASDLQP 181
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-------RYEEALADYEQALELDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 182 QNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLY---NFFQKAKLCYQDlrsALLLDPLHAQAKGLL 258
Cdd:COG0457 74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALlelGRYDEAIEAYER---ALELDPDDADALYNL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 259 QKMVDQAKQSLQDASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMVTDTQDNLVK 338
Cdd:COG0457 151 GIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
|
250
....*....|....
gi 225543306 339 QAQRQLLLTYNDFA 352
Cdd:COG0457 231 LALRLAALALYQYR 244
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
251-493 |
1.41e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.68 E-value: 1.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 251 HAQAKGLLQKMVDQAKQSLQDASTLAV----QGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAM 326
Cdd:COG2956 24 PDKAIDLLEEALELDPETVEAHLALGNlyrrRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 327 DMVTDTQDnlvkqAQRQLLLTYNDfavhcynHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQAL 406
Cdd:COG2956 104 ELDPDDAE-----ALRLLAEIYEQ-------EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 407 ALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDVATVLLLNPE 486
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQG-------DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
|
....*..
gi 225543306 487 YPKMAAV 493
Cdd:COG2956 245 DDLLLAL 251
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
78-259 |
1.92e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.81 E-value: 1.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 78 YYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQG 157
Cdd:COG0457 45 LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 158 qclyelcDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLC 237
Cdd:COG0457 125 -------RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLL 197
|
170 180
....*....|....*....|..
gi 225543306 238 YQDLRSALLLDPLHAQAKGLLQ 259
Cdd:COG0457 198 ALLLALEQALRKKLAILTLAAL 219
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
189-468 |
1.38e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.18 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 189 RCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQAKGLLQkmvDQAKQS 268
Cdd:COG3914 5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALL---LLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 269 LQDASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMVTDtqdnlvkqaqrqLLLTY 348
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD------------FAEAY 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 349 NDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGF 428
Cdd:COG3914 150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACD 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 225543306 429 CQQKHRQFQTAEEHFSEAIRHSPQKPQYY------LHRAKCRQFLQ 468
Cdd:COG3914 230 WEVYDRFEELLAALARGPSELSPFALLYLpdddpaELLALARAWAQ 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
382-489 |
3.46e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 67.34 E-value: 3.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 382 YINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYYLHRA 461
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-------RYEEALADYEQALELDPDDAEALNNLG 83
|
90 100
....*....|....*....|....*...
gi 225543306 462 KCRQFLQNTLGARLDVATVLLLNPEYPK 489
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAE 111
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
264-410 |
4.51e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.06 E-value: 4.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 264 QAKQSLQDASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMdmvtdtqdnlvkQAQRQ 343
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEAL------------ELDPD 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 225543306 344 LLLTYNDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSP 410
Cdd:COG4783 71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
72-195 |
8.27e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.87 E-value: 8.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 72 PAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAF 151
Cdd:COG3914 109 PDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGN 188
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 225543306 152 VLYLQGQclyelcdFQEALCVFLQASDLQPQNASFSYRCMACLL 195
Cdd:COG3914 189 ALQDLGR-------LEEAIAAYRRALELDPDNADAHSNLLFALR 225
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
73-213 |
1.78e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.52 E-value: 1.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 73 AKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFV 152
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 225543306 153 LYLQGqclyelcDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQ 213
Cdd:COG4783 82 LLKAG-------DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
77-258 |
1.83e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.63 E-value: 1.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 77 EYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQ 156
Cdd:COG3914 46 LLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLAL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 157 GQclyelcdFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLY---NFFQK 233
Cdd:COG3914 126 GR-------LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALqdlGRLEE 198
|
170 180
....*....|....*....|....*
gi 225543306 234 AKLCYqdlRSALLLDPLHAQAKGLL 258
Cdd:COG3914 199 AIAAY---RRALELDPDNADAHSNL 220
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
73-457 |
1.96e-10 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 64.23 E-value: 1.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 73 AKVREyynQGHQCLLQEDWEMSVLFFSRALHLDPKLVdFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFV 152
Cdd:TIGR00990 128 AKLKE---KGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 153 LYLQGQCLYELCDFQeALCVflqasdlqpqNASFSYRCMACLLA--LKRYHDCLALITREVKQGRASADVYIlrarlYNF 230
Cdd:TIGR00990 204 YDGLGKYADALLDLT-ASCI----------IDGFRNEQSAQAVErlLKKFAESKAKEILETKPENLPSVTFV-----GNY 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 231 FQ--KAKLCYQDLRSALLLDplHAQAKGLLQK----MVDQAKQSLQDASTLAVQgkvhralkcincAIENNPLDPNFFF- 303
Cdd:TIGR00990 268 LQsfRPKPRPAGLEDSNELD--EETGNGQLQLglksPESKADESYEEAARAFEK------------ALDLGKLGEKEAIa 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 304 --FRGTLRRRLQQFDHAVEDFLKAMDMVTDTQDNLVKQAQRQLLLTYNDFAvhcYNHgayqegvllLNKAIRDEQNEKGL 381
Cdd:TIGR00990 334 lnLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA---EED---------FDKALKLNSEDPDI 401
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 225543306 382 YINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYY 457
Cdd:TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG-------SIASSMATFRRCKKNFPEAPDVY 470
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
78-248 |
3.87e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.18 E-value: 3.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 78 YYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQG 157
Cdd:COG0457 79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 158 qclyelcDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLC 237
Cdd:COG0457 159 -------RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231
|
170
....*....|.
gi 225543306 238 YQDLRSALLLD 248
Cdd:COG0457 232 ALRLAALALYQ 242
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
72-184 |
5.41e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 60.31 E-value: 5.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 72 PAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNK-YLNRla 150
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYaYLNR-- 147
|
90 100 110
....*....|....*....|....*....|....
gi 225543306 151 fvlylqGQCLYELCDFQEALCVFLQASDLQPQNA 184
Cdd:COG4785 148 ------GIALYYLGRYELAIADLEKALELDPNDP 175
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
240-467 |
5.94e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 60.31 E-value: 5.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 240 DLRSALLLDPLHAQAKGLLQKMVDQAKQSLQDASTLAVQGKVHRALK-----CINCAIEN--------NPLDPNFFFFRG 306
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALAlaaaaLAAAALAAeridralaLPDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 307 TLRRRLQQFDHAVEDFlkamdmvtdtqdnlvkqaqrqllltyndfavhcynhgayqegvlllNKAIRDEQNEKGLYINRG 386
Cdd:COG4785 81 VAYDSLGDYDLAIADF----------------------------------------------DQALELDPDLAEAYNNRG 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 387 DCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQF 466
Cdd:COG4785 115 LAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLG-------RYELAIADLEKALELDPNDPERALWLYLAERK 187
|
.
gi 225543306 467 L 467
Cdd:COG4785 188 L 188
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
86-245 |
6.56e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.90 E-value: 6.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 86 LLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcD 165
Cdd:COG2956 121 EQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG-------D 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 166 FQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALItREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSAL 245
Cdd:COG2956 194 YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELL-RKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
115-249 |
8.38e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.89 E-value: 8.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 115 RAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcDFQEALCVFLQASDLQPQNASFSYRCMACL 194
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-------DLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 225543306 195 LALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDP 249
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
76-267 |
1.49e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.55 E-value: 1.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 76 REYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYL 155
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 156 QGQclyelcdFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITR--EVKQGRASADVYILRARL------ 227
Cdd:COG3914 159 LGR-------LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRalELDPDNADAHSNLLFALRqacdwe 231
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 225543306 228 -YNFFQKAKLCYQDLRSALLLDPLHAQAKGLLQKMVDQAKQ 267
Cdd:COG3914 232 vYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARA 272
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
72-184 |
1.64e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.55 E-value: 1.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 72 PAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAF 151
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93
|
90 100 110
....*....|....*....|....*....|...
gi 225543306 152 VLYLQGqclyelcDFQEALCVFLQASDLQPQNA 184
Cdd:COG4235 94 AAFQQG-------DYAEAIAAWQKLLALLPADA 119
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
86-181 |
1.82e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 57.28 E-value: 1.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 86 LLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcD 165
Cdd:COG5010 65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG-------Q 137
|
90
....*....|....*.
gi 225543306 166 FQEALCVFLQASDLQP 181
Cdd:COG5010 138 DDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
100-227 |
1.91e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.55 E-value: 1.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 100 RALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcDFQEALCVFLQASDL 179
Cdd:COG4235 8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-------DTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 225543306 180 QPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARL 227
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
360-485 |
3.14e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.51 E-value: 3.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 360 AYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTA 439
Cdd:COG5010 35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG-------DKDEA 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 225543306 440 EEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDVATVLLLNP 485
Cdd:COG5010 108 KEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
98-272 |
5.75e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.82 E-value: 5.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 98 FSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcDFQEALCVFLQAS 177
Cdd:COG2956 99 LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG-------DYDEAIEALEKAL 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 178 DLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQAKGL 257
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL 251
|
170 180
....*....|....*....|
gi 225543306 258 L-----QKMVDQAKQSLQDA 272
Cdd:COG2956 252 AdllerKEGLEAALALLERQ 271
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
308-451 |
1.47e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.58 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 308 LRRRLQQFDHAVEDFLKAMDMVTDTQDNLVKQAQRQLLLTYNDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGD 387
Cdd:COG5010 17 LTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLAL 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 225543306 388 CFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSP 451
Cdd:COG5010 97 LYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG-------QDDEAKAALQRALGTSP 153
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
72-213 |
1.61e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 56.66 E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 72 PAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAf 151
Cdd:COG2956 141 PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA- 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 225543306 152 vlylqgQCLYELCDFQEALCVFLQASDLQPQNASFSYRCMAcLLALKRYHDCLALITREVKQ 213
Cdd:COG2956 220 ------ELYEKLGDPEEALELLRKALELDPSDDLLLALADL-LERKEGLEAALALLERQLRR 274
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
388-486 |
4.71e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.32 E-value: 4.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 388 CFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEhFSEAIRHSPQKPQYYLHRAKCRQFL 467
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-------RYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
|
90
....*....|....*....
gi 225543306 468 QNTLGARLDVATVLLLNPE 486
Cdd:COG3063 73 GDYDEALAYLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
283-413 |
6.76e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 6.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 283 RALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMVTDTQDNLVKQAQRQllltyndfavhcYNHGAYQ 362
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL------------LAAGDTE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 225543306 363 EGVLLLNKAIR-DEQNEKGLYiNRGDCFFQLGNLAFAEADYKQALALSPLDE 413
Cdd:COG4235 69 EAEELLERALAlDPDNPEALY-LLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
81-325 |
1.13e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.47 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 81 QGHQCLLQEDWEMSVLFFSRALHLDPKLVdfYVFRAEAFIQLC--DFSSALQNLRRAYSYDPGNNKYLNrlafvlyLQGQ 158
Cdd:TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDPRSL--YAKLGLAQLALAenRFDEARALIDEVLTADPGNVDALL-------LKGD 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 159 CLYELCDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYnfFQKAKlcY 238
Cdd:TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD--FQKKN--Y 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 239 QDLRS----ALLLDP-----------------LHAQAKGLLQKMVDQAKQSLQD----ASTLAVQGKVHRALKCINCAIE 293
Cdd:TIGR02917 278 EDAREtlqdALKSAPeylpalllagaseyqlgNLEQAYQYLNQILKYAPNSHQArrllASIQLRLGRVDEAIATLSPALG 357
|
250 260 270
....*....|....*....|....*....|..
gi 225543306 294 NNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKA 325
Cdd:TIGR02917 358 LDPDDPAALSLLGEAYLALGDFEKAAEYLAKA 389
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
77-441 |
1.37e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.47 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 77 EYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQ 156
Cdd:TIGR02917 24 ELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 157 GQclyelcdFQEALCVFLQASDLQPQNAS--FSYRCMAcLLALKRYHDCLALITREVKQGRASADVYILRARL---YNFF 231
Cdd:TIGR02917 104 GK-------FQQVLDELPGKTLLDDEGAAelLALRGLA-YLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLalaENRF 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 232 QKAKlcyQDLRSALLLDPLHAQAKGLLqkmvdqakqslqdASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRR 311
Cdd:TIGR02917 176 DEAR---ALIDEVLTADPGNVDALLLK-------------GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 312 LQQFDHAVEDFlkamdmvtdtqDNLVKQAQRQLLLTYNDFAVHcYNHGAYQEGVLLLNKAIR-DEQNEKGLYInRGDCFF 390
Cdd:TIGR02917 240 AGEFEEAEKHA-----------DALLKKAPNSPLAHYLKALVD-FQKKNYEDARETLQDALKsAPEYLPALLL-AGASEY 306
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 225543306 391 QLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGFCQQKHRQFQTAEE 441
Cdd:TIGR02917 307 QLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALG 357
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
305-488 |
1.68e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.00 E-value: 1.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 305 RGTLRRRLQQFDHAVEDFLKAMDMVTDTQDNLVKQAQRQLLLTYNDFAvHCYNHGAYQEGVLLLNKAIRDEQNEKglyin 384
Cdd:COG3914 14 AAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLA-LAAGEAAAAAAALLLLAALLELAALL----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 385 rgdcFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYYLHRAKCR 464
Cdd:COG3914 88 ----LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG-------RLEEALAALRRALALNPDFAEAYLNLGEAL 156
|
170 180
....*....|....*....|....
gi 225543306 465 QFLQNTLGARLDVATVLLLNPEYP 488
Cdd:COG3914 157 RRLGRLEEAIAALRRALELDPDNA 180
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
103-270 |
1.79e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.61 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 103 HLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcDFQEALCVFLQASDLQPQ 182
Cdd:COG4785 67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLG-------DYDAALEDFDRALELDPD 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 183 NA-SFSYRCMAcLLALKRYHDCLALITREVKQGRASADVYILRarlynFFQKAKLCYQDLRSALLLDPL-HAQAKGLLQK 260
Cdd:COG4785 140 YAyAYLNRGIA-LYYLGRYELAIADLEKALELDPNDPERALWL-----YLAERKLDPEKALALLLEDWAtAYLLQGDTEE 213
|
170
....*....|
gi 225543306 261 MVDQAKQSLQ 270
Cdd:COG4785 214 ARELFKLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
86-181 |
2.33e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.40 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 86 LLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQnLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcD 165
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG-------D 74
|
90
....*....|....*.
gi 225543306 166 FQEALCVFLQASDLQP 181
Cdd:COG3063 75 YDEALAYLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
356-461 |
7.69e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 7.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 356 YNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQ 435
Cdd:COG4235 28 LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG-------D 100
|
90 100
....*....|....*....|....*.
gi 225543306 436 FQTAEEHFSEAIRHSPQKPQYYLHRA 461
Cdd:COG4235 101 YAEAIAAWQKLLALLPADAPARLLEA 126
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
363-493 |
8.07e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 8.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 363 EGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEH 442
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-------DTEEAEEL 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 225543306 443 FSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDVATVLLLNPEYPKMAAV 493
Cdd:COG4235 74 LERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
78-183 |
1.32e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.65 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 78 YYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQG 157
Cdd:COG4783 41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
|
90 100
....*....|....*....|....*.
gi 225543306 158 QclyelcdFQEALCVFLQASDLQPQN 183
Cdd:COG4783 121 R-------PDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
72-188 |
2.03e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 51.53 E-value: 2.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 72 PAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAF 151
Cdd:COG3914 143 PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLF 222
|
90 100 110
....*....|....*....|....*....|....*..
gi 225543306 152 VLYlqGQCLYELCDFQEALCVFLQASDLQPQNASFSY 188
Cdd:COG3914 223 ALR--QACDWEVYDRFEELLAALARGPSELSPFALLY 257
|
|
| ANAPC3 |
pfam12895 |
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ... |
121-207 |
6.15e-06 |
|
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.
Pssm-ID: 463743 [Multi-domain] Cd Length: 82 Bit Score: 44.94 E-value: 6.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 121 QLCDFSSALQNLRRAYSYDPGNNKYLnrlafvlYLQGQCLYELCDFQEALCVfLQASDLQPQNASFSYRCMACLLALKRY 200
Cdd:pfam12895 1 DQHQYKNAIFLAERLLAAEPESPEDA-------YLLAQCLFLNGQYKRAYEL-LRKAKLNGSSLGCRYLFAQCLLKLKKY 72
|
....*..
gi 225543306 201 HDCLALI 207
Cdd:pfam12895 73 DEALDAL 79
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
99-286 |
1.55e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 48.44 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 99 SRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKylnrlafVLYLQGQCLYELCDFQEALCVFLQASD 178
Cdd:TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD-------IYYHRAQLHFIKGEFAQAGKDYQKSID 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 179 LQPQNAsFSYRCMACL-LALKRYHDCLALITREVKQGRASADVYILRARLY---NFFQKAKLCYqDLRSAL--LLDPLH- 251
Cdd:TIGR00990 428 LDPDFI-FSHIQLGVTqYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLldqNKFDEAIEKF-DTAIELekETKPMYm 505
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 252 -------------------AQAKGLLQKMV------DQAKQSLqdASTLAVQGKVHRALK 286
Cdd:TIGR00990 506 nvlplinkalalfqwkqdfIEAENLCEKALiidpecDIAVATM--AQLLLQQGDVDEALK 563
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
204-340 |
1.70e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 204 LALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQAKGLLqkmvdqakqslqdASTLAVQGKVHR 283
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL-------------AEALLAAGDTEE 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 225543306 284 ALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMV-TDTQDNLVKQA 340
Cdd:COG4235 70 AEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAPARLLEAS 127
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
81-186 |
3.63e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 46.70 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 81 QGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNK-YLNrlafvlylQGQC 159
Cdd:PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKaYLR--------KGTA 79
|
90 100
....*....|....*....|....*..
gi 225543306 160 LYELCDFQEALCVFLQASDLQPQNASF 186
Cdd:PLN03088 80 CMKLEEYQTAKAALEKGASLAPGDSRF 106
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
359-451 |
4.15e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.85 E-value: 4.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 359 GAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEAdYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQT 438
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG-------DYDE 77
|
90
....*....|...
gi 225543306 439 AEEHFSEAIRHSP 451
Cdd:COG3063 78 ALAYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
98-250 |
7.27e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 7.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 98 FSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGQCLYELCDFQEALCVFLQAS 177
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 225543306 178 DLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPL 250
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
304-411 |
7.41e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 7.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 304 FRGTLRRRLQQFDHAVEDFLKAMDMVTDTQDnlvkqaqrqlllTYNDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYI 383
Cdd:COG5010 59 PSDNLYNKLGDFEESLALLEQALQLDPNNPE------------LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126
|
90 100
....*....|....*....|....*...
gi 225543306 384 NRGDCFFQLGNLAFAEADYKQALALSPL 411
Cdd:COG5010 127 NLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
148-326 |
9.62e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.26 E-value: 9.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 148 RLAFVLYLQGQCLYELCDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYhdclalitrevkqgrasadvyilrarl 227
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDL--------------------------- 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 228 ynffQKAklcYQDLRSALLLDPLHAQAKGLLqkmvdqakqslqdASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGT 307
Cdd:COG4783 55 ----DEA---IVLLHEALELDPDEPEARLNL-------------GLALLKAGDYDEALALLEKALKLDPEHPEAYLRLAR 114
|
170
....*....|....*....
gi 225543306 308 LRRRLQQFDHAVEDFLKAM 326
Cdd:COG4783 115 AYRALGRPDEAIAALEKAL 133
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
382-410 |
9.93e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.10 E-value: 9.93e-05
10 20
....*....|....*....|....*....
gi 225543306 382 YINRGDCFFQLGNLAFAEADYKQALALSP 410
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
394-569 |
2.40e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 394 NLAFAEADYKQALALSPLDEGANLRM-GVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLG 472
Cdd:COG4785 53 LAAAALAAERIDRALALPDLAQLYYErGVAYDSLG-------DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 473 ARLDVATVLLLNPEYPkmAAVMN---TLFpsmtvenvlKSQVAELAKLQLSRMIENGPKNiyPQSTVVQRLLERRKA--- 546
Cdd:COG4785 126 ALEDFDRALELDPDYA--YAYLNrgiALY---------YLGRYELAIADLEKALELDPND--PERALWLYLAERKLDpek 192
|
170 180
....*....|....*....|....*..
gi 225543306 547 --QVLVKLWK--QERLGTPEEEVTLYQ 569
Cdd:COG4785 193 alALLLEDWAtaYLLQGDTEEARELFK 219
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
308-410 |
2.57e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.92 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 308 LRRRLQQFDHAVEDFLKAMdmvtdtqdnlvkQAQRQLLLTYNDFAVHCYNHGAYQEGvLLLNKAIRDEQNEKGLYINRGD 387
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKAL------------ELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAE 67
|
90 100
....*....|....*....|...
gi 225543306 388 CFFQLGNLAFAEADYKQALALSP 410
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDP 90
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
118-209 |
2.92e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.54 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 118 AFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcDFQEALcVFLQASDLQPQNASFSYRCMACLLAL 197
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-------RYDEAI-ALEKALKLDPNNAEALLNLAELLLEL 72
|
90
....*....|..
gi 225543306 198 KRYHDCLALITR 209
Cdd:COG3063 73 GDYDEALAYLER 84
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
115-181 |
4.09e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.39 E-value: 4.09e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 225543306 115 RAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLafvlylqGQCLYELCDFQEALCVFLQASDLQP 181
Cdd:cd24142 6 KAEELLDQGNFELALKFLQRALELEPNNVEALELL-------GEILLELGDVEEAREVLLRAIELDP 65
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
88-525 |
4.15e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.92 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 88 QEDWEMSVLFFSRALHLDPKLVdfYVFRAEAFIQLC--DFSSALQNLRRAYSYDPGNNKYLNrlafvlyLQGQCLYELCD 165
Cdd:TIGR02917 308 LGNLEQAYQYLNQILKYAPNSH--QARRLLASIQLRlgRVDEAIATLSPALGLDPDDPAALS-------LLGEAYLALGD 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 166 FQEALCVFLQASDLQPQNASFSYRcmaclLALKRyhdclaLITREVKQGRAsadvyilrarlyNFFQKAKLCYQDLRSAL 245
Cdd:TIGR02917 379 FEKAAEYLAKATELDPENAAARTQ-----LGISK------LSQGDPSEAIA------------DLETAAQLDPELGRADL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 246 LL----------DPLHAQAKGLLQKMVDQAKQSLQDASTLAVQGKVHRALKCINCAIEnnpLDPNFFFFRGTLRRRLQQF 315
Cdd:TIGR02917 436 LLilsylrsgqfDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS---IEPDFFPAAANLARIDIQE 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 316 DHAVEDFLKAMDMVTDTQDNLvkqaqrQLLLTYNDFAVHcynHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNL 395
Cdd:TIGR02917 513 GNPDDAIQRFEKVLTIDPKNL------RAILALAGLYLR---TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 396 AFAEADYKQALALSPlDEGANLRMgvlqekLGFCQQKHRQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARl 475
Cdd:TIGR02917 584 KKALAILNEAADAAP-DSPEAWLM------LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI- 655
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 225543306 476 dvatvlllnpEYPKMAAvmnTLFPSMTVENVLKSQVAELAK-----LQLSRMIEN 525
Cdd:TIGR02917 656 ----------TSLKRAL---ELKPDNTEAQIGLAQLLLAAKrtesaKKIAKSLQK 697
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
127-293 |
4.31e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.59 E-value: 4.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 127 SALQNLRRAYSYDPGNNKYLNRLAFVLYLQGQCLYELCDFQEALCVFLQASDLQPQNAS-FSYRCMAcLLALKRYHDCLA 205
Cdd:COG4785 50 AAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEaYNNRGLA-YLLLGDYDAALE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 206 LITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQA---KGLLQKMVD--QAKQSLQD--ASTLAVQ 278
Cdd:COG4785 129 DFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERalwLYLAERKLDpeKALALLLEdwATAYLLQ 208
|
170
....*....|....*
gi 225543306 279 GKVHRALKCINCAIE 293
Cdd:COG4785 209 GDTEEARELFKLALA 223
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
77-170 |
4.35e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.00 E-value: 4.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 77 EYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNN--KYlnrlafvLY 154
Cdd:cd24142 2 ELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGyeKY-------LY 74
|
90
....*....|....*.
gi 225543306 155 LqGQclyeLCDFQEAL 170
Cdd:cd24142 75 L-GQ----LSGGEEAL 85
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
367-456 |
5.85e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.85 E-value: 5.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 367 LLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEA 446
Cdd:PLN03088 24 LYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE-------EYQTAKAALEKG 96
|
90
....*....|
gi 225543306 447 IRHSPQKPQY 456
Cdd:PLN03088 97 ASLAPGDSRF 106
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
86-407 |
6.63e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.53 E-value: 6.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 86 LLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcD 165
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG-------D 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 166 FQEALCVFLQASDLQPQN--ASFSYRCMA-----CLLALKRYHDCLALITREVKQGRASADVYILRAR---LYNFFQKA- 234
Cdd:TIGR02917 481 LAKAREAFEKALSIEPDFfpAAANLARIDiqegnPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNeeeAVAWLEKAa 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 235 KLCYQDLRSALLLDPLH------AQAKGLLQKMVDQAKQSLQD----ASTLAVQGKVHRALKCINCAIENNPLDPNFFFF 304
Cdd:TIGR02917 561 ELNPQEIEPALALAQYYlgkgqlKKALAILNEAADAAPDSPEAwlmlGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 305 RGTLRRRLQQFDHAVEDFLKAMDMVTDTQDnlVKQAQRQLLLTYNDFavhcynhgayqegvlllNKAIRDEQNEKGLYIN 384
Cdd:TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTE--AQIGLAQLLLAAKRT-----------------ESAKKIAKSLQKQHPK 701
|
330 340
....*....|....*....|...
gi 225543306 385 RGDCFFQLGNLAFAEADYKQALA 407
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQ 724
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
386-427 |
6.88e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.84 E-value: 6.88e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 225543306 386 GDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLG 427
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
382-410 |
9.26e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 9.26e-04
10 20
....*....|....*....|....*....
gi 225543306 382 YINRGDCFFQLGNLAFAEADYKQALALSP 410
Cdd:smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
128-265 |
1.15e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.99 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 128 ALQNLRRAYSYDPGNnkylnrlAFVLYLQGQCLYELCDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALI 207
Cdd:COG4235 2 AIARLRQALAANPND-------AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELL 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 225543306 208 TREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQAKgLLQKMVDQA 265
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR-LLEASIAEA 131
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
381-448 |
2.22e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.75 E-value: 2.22e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 225543306 381 LYINRGDCFFQLGNLAFAEADYKQALAL-SPLDEGANLRMGVLQEKLGFCQQKHRQFQTAEEHFSEAIR 448
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIaRRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
381-410 |
2.62e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.96 E-value: 2.62e-03
10 20 30
....*....|....*....|....*....|
gi 225543306 381 LYINRGDCFFQLGNLAFAEADYKQALALSP 410
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDP 32
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
356-455 |
5.13e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 5.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543306 356 YNHGAYQEGVLLLNKAIRDEQNEKGL---YINRGDCFFQLGNLAFAEADYKQALAL---SPLDEGANLRMGVLQEKLGfc 429
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELG-- 81
|
90 100
....*....|....*....|....*.
gi 225543306 430 qqkhrQFQTAEEHFSEAIRHSPQKPQ 455
Cdd:COG1729 82 -----DYDKARATLEELIKKYPDSEA 102
|
|
| |
