beta/gamma crystallin domain-containing protein 3 [Mus musculus]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
beta-trefoil_Ricin_vlAKAP | cd23463 | ricin B-type lectin domain, beta-trefoil fold, found in very large A-kinase anchor protein ... |
2817-2952 | 2.11e-81 | |||
ricin B-type lectin domain, beta-trefoil fold, found in very large A-kinase anchor protein (vlAKAP) and similar proteins; vlAKAP, also called beta/gamma crystallin domain-containing protein 3 (CRYBG3), is an anchoring protein that mediates the subcellular compartmentation of protein kinase A (PKA). It binds to the dimeric RII-alpha regulatory subunit of PKA (PRKAR2A/PRKAR2B). vlAKAP belongs to the beta/gamma-crystallin family. It contains a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. : Pssm-ID: 467341 Cd Length: 136 Bit Score: 264.30 E-value: 2.11e-81
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2460-2543 | 9.46e-27 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. : Pssm-ID: 459639 Cd Length: 82 Bit Score: 105.65 E-value: 9.46e-27
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2553-2636 | 6.48e-26 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. : Pssm-ID: 459639 Cd Length: 82 Bit Score: 103.34 E-value: 6.48e-26
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2653-2727 | 5.50e-22 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. : Pssm-ID: 459639 Cd Length: 82 Bit Score: 92.17 E-value: 5.50e-22
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2735-2815 | 4.26e-20 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. : Pssm-ID: 459639 Cd Length: 82 Bit Score: 86.78 E-value: 4.26e-20
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Crystall super family | cl02528 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2276-2362 | 1.03e-10 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. The actual alignment was detected with superfamily member pfam00030: Pssm-ID: 470604 Cd Length: 82 Bit Score: 60.20 E-value: 1.03e-10
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Name | Accession | Description | Interval | E-value | |||
beta-trefoil_Ricin_vlAKAP | cd23463 | ricin B-type lectin domain, beta-trefoil fold, found in very large A-kinase anchor protein ... |
2817-2952 | 2.11e-81 | |||
ricin B-type lectin domain, beta-trefoil fold, found in very large A-kinase anchor protein (vlAKAP) and similar proteins; vlAKAP, also called beta/gamma crystallin domain-containing protein 3 (CRYBG3), is an anchoring protein that mediates the subcellular compartmentation of protein kinase A (PKA). It binds to the dimeric RII-alpha regulatory subunit of PKA (PRKAR2A/PRKAR2B). vlAKAP belongs to the beta/gamma-crystallin family. It contains a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467341 Cd Length: 136 Bit Score: 264.30 E-value: 2.11e-81
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2460-2543 | 9.46e-27 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 105.65 E-value: 9.46e-27
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2553-2636 | 6.48e-26 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 103.34 E-value: 6.48e-26
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2653-2727 | 5.50e-22 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 92.17 E-value: 5.50e-22
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2735-2815 | 4.26e-20 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 86.78 E-value: 4.26e-20
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Ricin_B_lectin | pfam00652 | Ricin-type beta-trefoil lectin domain; |
2821-2947 | 1.24e-18 | |||
Ricin-type beta-trefoil lectin domain; Pssm-ID: 395527 [Multi-domain] Cd Length: 126 Bit Score: 84.12 E-value: 1.24e-18
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
2460-2543 | 2.47e-18 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 81.79 E-value: 2.47e-18
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
2554-2636 | 2.59e-18 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 81.79 E-value: 2.59e-18
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2276-2362 | 1.03e-10 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 60.20 E-value: 1.03e-10
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RICIN | smart00458 | Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. |
2824-2950 | 3.30e-10 | |||
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. Pssm-ID: 214672 [Multi-domain] Cd Length: 118 Bit Score: 59.83 E-value: 3.30e-10
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
2653-2727 | 8.17e-10 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 57.52 E-value: 8.17e-10
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
2276-2362 | 6.17e-09 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 55.21 E-value: 6.17e-09
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lectin_2 | NF035930 | lectin; Lectins are important adhesin proteins, which bind carbohydrate structures on host ... |
2875-2947 | 1.31e-08 | |||
lectin; Lectins are important adhesin proteins, which bind carbohydrate structures on host cell surface. The carbohydrate specificity of diverse lectins to a large extent dictates bacteria tissue tropism by mediating specific attachment to unique host sites expressing the corresponding carbohydrate receptor. Pssm-ID: 468267 [Multi-domain] Cd Length: 238 Bit Score: 58.26 E-value: 1.31e-08
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
2767-2815 | 1.82e-06 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 47.89 E-value: 1.82e-06
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lectin_2 | NF035930 | lectin; Lectins are important adhesin proteins, which bind carbohydrate structures on host ... |
2837-2902 | 1.49e-04 | |||
lectin; Lectins are important adhesin proteins, which bind carbohydrate structures on host cell surface. The carbohydrate specificity of diverse lectins to a large extent dictates bacteria tissue tropism by mediating specific attachment to unique host sites expressing the corresponding carbohydrate receptor. Pssm-ID: 468267 [Multi-domain] Cd Length: 238 Bit Score: 45.93 E-value: 1.49e-04
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Name | Accession | Description | Interval | E-value | |||
beta-trefoil_Ricin_vlAKAP | cd23463 | ricin B-type lectin domain, beta-trefoil fold, found in very large A-kinase anchor protein ... |
2817-2952 | 2.11e-81 | |||
ricin B-type lectin domain, beta-trefoil fold, found in very large A-kinase anchor protein (vlAKAP) and similar proteins; vlAKAP, also called beta/gamma crystallin domain-containing protein 3 (CRYBG3), is an anchoring protein that mediates the subcellular compartmentation of protein kinase A (PKA). It binds to the dimeric RII-alpha regulatory subunit of PKA (PRKAR2A/PRKAR2B). vlAKAP belongs to the beta/gamma-crystallin family. It contains a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467341 Cd Length: 136 Bit Score: 264.30 E-value: 2.11e-81
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beta-trefoil_Ricin_CRYBG | cd23430 | ricin B-type lectin domain, beta-trefoil fold, found in the beta/gamma crystallin ... |
2820-2951 | 3.77e-69 | |||
ricin B-type lectin domain, beta-trefoil fold, found in the beta/gamma crystallin domain-containing protein (CRYBG) family; The CRYBG family includes three members: CRYBG1, CRYBG2, and CRYBG3/vlAKAP. CRYBG1, also called absent in melanoma 1 protein (AIM1), may function as a suppressor of malignant melanoma. It may exert its effects through interactions with the cytoskeleton. CRYBG2 is also called absent in melanoma 1-like protein (AIM1L). CRYBG3/vlAKAP, also called very large A-kinase anchor protein, is an anchoring protein that mediates the subcellular compartmentation of protein kinase A (PKA). It binds to the dimeric RII-alpha regulatory subunit of PKA (PRKAR2A/PRKAR2B). CRYBG proteins belong to the beta/gamma-crystallin family. They all contain a ricin B-type lectin domain with a beta-trefoil fold at the C-terminus. The beta-trefoil fold is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467308 [Multi-domain] Cd Length: 133 Bit Score: 229.01 E-value: 3.77e-69
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beta-trefoil_Ricin_CRYBG1 | cd23464 | ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin ... |
2817-2952 | 1.07e-28 | |||
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin domain-containing protein 1 (CRYBG1) and similar proteins; CRYBG1, also called absent in melanoma 1 protein (AIM1), may function as a suppressor of malignant melanoma. It may exert its effects through interactions with the cytoskeleton. CRYBG1 belongs to the beta/gamma-crystallin family. It contains a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467342 Cd Length: 137 Bit Score: 113.36 E-value: 1.07e-28
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beta-trefoil_Ricin_CRYBG2 | cd23465 | ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin ... |
2817-2952 | 2.13e-28 | |||
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin domain-containing protein 2 (CRYBG2) and similar proteins; CRYBG2, also called absent in melanoma 1-like protein (AIM1L), is a beta/gamma-crystallin family protein with a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467343 Cd Length: 136 Bit Score: 112.65 E-value: 2.13e-28
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2460-2543 | 9.46e-27 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 105.65 E-value: 9.46e-27
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2553-2636 | 6.48e-26 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 103.34 E-value: 6.48e-26
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2653-2727 | 5.50e-22 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 92.17 E-value: 5.50e-22
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2735-2815 | 4.26e-20 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 86.78 E-value: 4.26e-20
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beta-trefoil_Ricin-like | cd00161 | ricin B-type lectin domain, beta-trefoil fold; The ricin B-type lectin domain is a ... |
2821-2947 | 1.22e-18 | |||
ricin B-type lectin domain, beta-trefoil fold; The ricin B-type lectin domain is a carbohydrate-binding domain formed from presumed gene triplication. It shows a beta-trefoil fold characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain was originally found in Ricin, which is a legume lectin from the seeds of the castor bean plant, Ricinus communis. It is also found in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases, or proteases, which serve diverse functions such as inhibitory toxicity, enzymatic activity, and signal transduction. The ricin B-type lectin domain can be present in one or more copies and has been shown in some instances to bind simple sugars, such as galactose or lactose. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B-type lectin domain has also been referred as the (QxW)3 domain and the three homologous regions as the QxW repeats. A disulfide bond is also conserved in some QxW repeats. Pssm-ID: 467293 [Multi-domain] Cd Length: 134 Bit Score: 84.34 E-value: 1.22e-18
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Ricin_B_lectin | pfam00652 | Ricin-type beta-trefoil lectin domain; |
2821-2947 | 1.24e-18 | |||
Ricin-type beta-trefoil lectin domain; Pssm-ID: 395527 [Multi-domain] Cd Length: 126 Bit Score: 84.12 E-value: 1.24e-18
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
2460-2543 | 2.47e-18 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 81.79 E-value: 2.47e-18
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
2554-2636 | 2.59e-18 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 81.79 E-value: 2.59e-18
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beta-trefoil_Ricin-like | cd00161 | ricin B-type lectin domain, beta-trefoil fold; The ricin B-type lectin domain is a ... |
2867-2950 | 1.73e-12 | |||
ricin B-type lectin domain, beta-trefoil fold; The ricin B-type lectin domain is a carbohydrate-binding domain formed from presumed gene triplication. It shows a beta-trefoil fold characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain was originally found in Ricin, which is a legume lectin from the seeds of the castor bean plant, Ricinus communis. It is also found in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases, or proteases, which serve diverse functions such as inhibitory toxicity, enzymatic activity, and signal transduction. The ricin B-type lectin domain can be present in one or more copies and has been shown in some instances to bind simple sugars, such as galactose or lactose. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B-type lectin domain has also been referred as the (QxW)3 domain and the three homologous regions as the QxW repeats. A disulfide bond is also conserved in some QxW repeats. Pssm-ID: 467293 [Multi-domain] Cd Length: 134 Bit Score: 67.01 E-value: 1.73e-12
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beta-trefoil_Ricin_XLN-like | cd23418 | ricin B-type lectin domain, beta-trefoil fold, found in Streptomyces olivaceoviridis endo-1, ... |
2818-2947 | 3.03e-11 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Streptomyces olivaceoviridis endo-1,4-beta-xylanase and similar proteins; The family includes Streptomyces olivaceoviridis endo-1,4-beta-xylanase (XLN, EC 3.2.1.8), Streptomyces avermitilis beta-L-arabinopyranosidase (EC 3.2.1.185), and Streptomyces coelicolor extracellular exo-alpha-L-arabinofuranosidase (ABF, EC 3.2.1.55). XLN, also called xylanase, or 1,4-beta-D-xylan xylanohydrolase, belongs to the glycosyl hydrolase 10 (cellulase F) family. It contributes to hydrolyze hemicellulose, the major component of plant cell walls. XLN contains a (beta/alpha)8-barrel as a catalytic domain, a family 13 carbohydrate binding module (CBM13) as a xylan binding domain (XBD) and a Gly/Pro-rich linker between them. Beta-L-arabinopyranosidase belongs to the glycosyl hydrolase 27 (GH27) family. It has a GH27 catalytic domain, an antiparallel beta-domain containing Greek key motifs, another antiparallel beta-domain forming a jellyroll structure, and a CBM13 module. ScAraf62A, also called ABF, or arabinosidase, or arabinoxylan arabinofuranohydrolase, belongs to the glycosyl hydrolase 62 (GH62) family. It is involved in the degradation of xylan and is a key enzyme in the complete degradation of the plant cell wall. It has a specific arabinofuranose-debranching activity on xylan from gramineae. It acts synergistically with xylanases and binds specifically to xylan. ScAraf62A comprises a CBM13 module at its N-terminus and a catalytic domain at its C-terminus. This model corresponds to the CBM13 module, which is a ricin B-type lectin domain with a beta-trefoil fold, characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may contain a potential sugar-binding pocket. Pssm-ID: 467297 [Multi-domain] Cd Length: 130 Bit Score: 63.14 E-value: 3.03e-11
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
2276-2362 | 1.03e-10 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 60.20 E-value: 1.03e-10
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RICIN | smart00458 | Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. |
2824-2950 | 3.30e-10 | |||
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. Pssm-ID: 214672 [Multi-domain] Cd Length: 118 Bit Score: 59.83 E-value: 3.30e-10
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beta-trefoil_Ricin_GllA-1 | cd23454 | GllA-1 domain, beta-trefoil fold, found in Mucor circinelloides Gellins and similar proteins; ... |
2824-2949 | 6.43e-10 | |||
GllA-1 domain, beta-trefoil fold, found in Mucor circinelloides Gellins and similar proteins; Gellin proteins act as central effectors of wound-induced protoplasmic gelation. They possess ten related N-terminal beta-trefoil domains (Gll-1 to Gll-10) that contribute to distinct gelation-related activities. The beta-trefoil domains show low sequence similarity to members of the functionally diverse ricin B lectin domain family. They are characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site. Gellin from M. circinelloides has been called GellinA (also known as GllA). The model corresponds to GllA-1 domain, which is a remote family member of the ricin B-type lectin domain. Pssm-ID: 467332 [Multi-domain] Cd Length: 136 Bit Score: 59.64 E-value: 6.43e-10
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
2653-2727 | 8.17e-10 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 57.52 E-value: 8.17e-10
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beta-trefoil_Ricin_EW29-like | cd23449 | ricin B-type lectin domain, beta-trefoil fold, found in Lumbricus terrestris 29-kDa ... |
2824-2950 | 3.68e-09 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Lumbricus terrestris 29-kDa galactose-binding lectin (EW29) and similar proteins; EW29 is a galactose-binding lectin from the earthworm Lumbricus terrestris. It contains two ricin B-type lectin domains with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The second ricin B-type lectin domain may harbor two sugar-binding pockets in subdomains alpha and gamma. EW29 uses these two sugar-binding sites for its function as a single domain-type hemagglutinin. Pssm-ID: 467327 [Multi-domain] Cd Length: 128 Bit Score: 57.30 E-value: 3.68e-09
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
2276-2362 | 6.17e-09 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 55.21 E-value: 6.17e-09
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lectin_2 | NF035930 | lectin; Lectins are important adhesin proteins, which bind carbohydrate structures on host ... |
2875-2947 | 1.31e-08 | |||
lectin; Lectins are important adhesin proteins, which bind carbohydrate structures on host cell surface. The carbohydrate specificity of diverse lectins to a large extent dictates bacteria tissue tropism by mediating specific attachment to unique host sites expressing the corresponding carbohydrate receptor. Pssm-ID: 468267 [Multi-domain] Cd Length: 238 Bit Score: 58.26 E-value: 1.31e-08
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RicinB_lectin_2 | pfam14200 | Ricin-type beta-trefoil lectin domain-like; |
2867-2926 | 7.60e-08 | |||
Ricin-type beta-trefoil lectin domain-like; Pssm-ID: 464102 [Multi-domain] Cd Length: 89 Bit Score: 52.38 E-value: 7.60e-08
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beta-trefoil_Ricin_SCDase_rpt2 | cd23500 | second ricin B-type lectin domain, beta-trefoil fold, found in Shewanella algae sphingolipid ... |
2867-2948 | 1.39e-07 | |||
second ricin B-type lectin domain, beta-trefoil fold, found in Shewanella algae sphingolipid ceramide N-deacylase (SCDase) and similar proteins; SCDase (EC 3.5.1.69) is an enzyme which hydrolyzes the N-acyl linkage between fatty acid and sphingosine in ceramide of various glycosphingolipids and sphingomyelin. Shewanella algae SCDase contains two ricin B-type lectin domains at its C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. The model corresponds to the second lectin domain. Pssm-ID: 467378 [Multi-domain] Cd Length: 128 Bit Score: 52.85 E-value: 1.39e-07
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RICIN | smart00458 | Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. |
2823-2902 | 6.89e-07 | |||
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. Pssm-ID: 214672 [Multi-domain] Cd Length: 118 Bit Score: 50.59 E-value: 6.89e-07
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
2767-2815 | 1.82e-06 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 47.89 E-value: 1.82e-06
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beta-trefoil_Ricin_SCDase | cd23456 | ricin B-type lectin domain, beta-trefoil fold, found in Shewanella algae sphingolipid ceramide ... |
2868-2950 | 1.17e-05 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Shewanella algae sphingolipid ceramide N-deacylase (SCDase) and similar proteins; SCDase (EC 3.5.1.69) is an enzyme which hydrolyzes the N-acyl linkage between fatty acid and sphingosine in ceramide of various glycosphingolipids and sphingomyelin. Shewanella algae SCDase contains two ricin B-type lectin domains at its C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467334 [Multi-domain] Cd Length: 122 Bit Score: 46.97 E-value: 1.17e-05
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beta-trefoil_Ricin_XLN-like | cd23418 | ricin B-type lectin domain, beta-trefoil fold, found in Streptomyces olivaceoviridis endo-1, ... |
2833-2903 | 1.23e-05 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Streptomyces olivaceoviridis endo-1,4-beta-xylanase and similar proteins; The family includes Streptomyces olivaceoviridis endo-1,4-beta-xylanase (XLN, EC 3.2.1.8), Streptomyces avermitilis beta-L-arabinopyranosidase (EC 3.2.1.185), and Streptomyces coelicolor extracellular exo-alpha-L-arabinofuranosidase (ABF, EC 3.2.1.55). XLN, also called xylanase, or 1,4-beta-D-xylan xylanohydrolase, belongs to the glycosyl hydrolase 10 (cellulase F) family. It contributes to hydrolyze hemicellulose, the major component of plant cell walls. XLN contains a (beta/alpha)8-barrel as a catalytic domain, a family 13 carbohydrate binding module (CBM13) as a xylan binding domain (XBD) and a Gly/Pro-rich linker between them. Beta-L-arabinopyranosidase belongs to the glycosyl hydrolase 27 (GH27) family. It has a GH27 catalytic domain, an antiparallel beta-domain containing Greek key motifs, another antiparallel beta-domain forming a jellyroll structure, and a CBM13 module. ScAraf62A, also called ABF, or arabinosidase, or arabinoxylan arabinofuranohydrolase, belongs to the glycosyl hydrolase 62 (GH62) family. It is involved in the degradation of xylan and is a key enzyme in the complete degradation of the plant cell wall. It has a specific arabinofuranose-debranching activity on xylan from gramineae. It acts synergistically with xylanases and binds specifically to xylan. ScAraf62A comprises a CBM13 module at its N-terminus and a catalytic domain at its C-terminus. This model corresponds to the CBM13 module, which is a ricin B-type lectin domain with a beta-trefoil fold, characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may contain a potential sugar-binding pocket. Pssm-ID: 467297 [Multi-domain] Cd Length: 130 Bit Score: 46.96 E-value: 1.23e-05
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beta-trefoil_Ricin_laminarinase | cd23451 | ricin B-type lectin domain, beta-trefoil fold, found in glucan endo-1,3-beta-glucosidase and ... |
2875-2947 | 1.38e-05 | |||
ricin B-type lectin domain, beta-trefoil fold, found in glucan endo-1,3-beta-glucosidase and similar proteins; Glucan endo-1,3-beta-glucosidase (EC 3.2.1.39), also called (1->3)-beta-glucan endohydrolase, or (1->3)-beta-glucanase, or laminarinase, belongs to the glycosyl hydrolase 64 (GH64) family. It catalyzes hydrolysis of (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans. It has been implicated in the defense against fungal pathogens. Glucan endo-1,3-beta-glucosidase contains a C-terminal ricin B-type lectin domain with a beta-trefoil fold, characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site. Pssm-ID: 467329 [Multi-domain] Cd Length: 125 Bit Score: 46.94 E-value: 1.38e-05
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beta-trefoil_Ricin_MTX-like_rpt1-3 | cd23497 | first, second and third ricin B-type lectin domains, beta-trefoil fold, found in ... |
2852-2950 | 1.77e-05 | |||
first, second and third ricin B-type lectin domains, beta-trefoil fold, found in Lysinibacillus sphaericus mosquitocidal toxin (MTX) and similar proteins; This subfamily includes Lysinibacillus sphaericus MTX and Pieris brassicae pierisin. MTX acts as an ADP-ribosyl transferase. Pierisin, also called NAD--DNA ADP-ribosyltransferase, pierisin-2, or pierisin-B, catalyzes the ADP ribosylation of double-stranded DNA by targeting the N2 amino group of dG residues. It induces apoptosis in a range of human cell lines. Members of this family contain four ricin B-type lectin domains with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The model corresponds to the first, second and third ricin B-type lectin domains. Each subdomain bears a potential sugar binding site. Pssm-ID: 467375 [Multi-domain] Cd Length: 139 Bit Score: 46.97 E-value: 1.77e-05
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beta-trefoil_Ricin_RSA | cd23455 | ricin B-type lectin domain, beta-trefoil fold, found in Rhizoctonia solani agglutinin (RSA) ... |
2868-2949 | 1.02e-04 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Rhizoctonia solani agglutinin (RSA) and similar proteins; RSA is a 15.5-kDa lectin accumulated in the mycelium and sclerotia of the soil born plant pathogenic fungus R. solani. It may act as a storage protein implicated in fungal insecticidal activity. It displays high selectivity towards terminal non-reducing N-acetylgalactosamine residues. RSA reveals a domain-swapping dimeric assembly. Each monomer contains a ricin B-type lectin domain that adopts a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site. Pssm-ID: 467333 [Multi-domain] Cd Length: 131 Bit Score: 44.62 E-value: 1.02e-04
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lectin_2 | NF035930 | lectin; Lectins are important adhesin proteins, which bind carbohydrate structures on host ... |
2837-2902 | 1.49e-04 | |||
lectin; Lectins are important adhesin proteins, which bind carbohydrate structures on host cell surface. The carbohydrate specificity of diverse lectins to a large extent dictates bacteria tissue tropism by mediating specific attachment to unique host sites expressing the corresponding carbohydrate receptor. Pssm-ID: 468267 [Multi-domain] Cd Length: 238 Bit Score: 45.93 E-value: 1.49e-04
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beta-trefoil_Ricin_RPI | cd23452 | ricin B-type lectin domain, beta-trefoil fold, found in Rarobacter faecitabidus serine ... |
2848-2947 | 3.20e-04 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Rarobacter faecitabidus serine protease I (RPI) and similar proteins; RPI, also called serine protease 1, is a major serine protease exhibiting lytic activity toward living yeast cells. It has a lectin-like affinity for mannose. Mannoproteins may be the native substrate for RPI. RPI contains a C-terminal ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site. Pssm-ID: 467330 [Multi-domain] Cd Length: 125 Bit Score: 42.89 E-value: 3.20e-04
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beta-trefoil_Ricin_MPL_CNL | cd23422 | ricin B-type lectin domain, beta-trefoil fold, found in Macrolepiota procera ricin B-like ... |
2824-2903 | 1.44e-03 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Macrolepiota procera ricin B-like lectin (MPL), Clitocybe nebularis lectin (CNL), and similar proteins; MPL and CNL are a homodimeric ricin B-like lectins with a beta-trefoil fold that is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Their alpha subunit may harbor a sugar-binding pocket. MPL has the highest specificity for terminal N-acetyllactosamine and other beta-galactosides. CNL induces maturation and activation of dendritic cells via the toll-like receptor 4 pathway. It is specific for terminal, non-reducing N-acetylgalactosamine (Gal-NAc)-containing carbohydrates including N,N'-diacetyllactosediamine/LDN (GalNAcbeta1-4GlcNAc, LacdiNAc). It is also specific for carbohydrates containing N-acetylglucosamine (-GlcNAc) or N-acetyllactosamine (-Galbeta1-4GlcNAc) at the reducing end. Pssm-ID: 467300 [Multi-domain] Cd Length: 135 Bit Score: 41.15 E-value: 1.44e-03
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beta-trefoil_Ricin_MOA-like | cd23416 | ricin B-type lectin domain, beta-trefoil fold, found in Marasmius oreades agglutinin (MOA) and ... |
2819-2950 | 1.45e-03 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Marasmius oreades agglutinin (MOA) and similar proteins; The family includes Marasmius oreades agglutinin (MOA) and Polyporus squamosus Ricin B-related lectin (PSL). MOA is a lectin isolated from fruiting bodies of the mushroom M. oreades. It specifically binds non-reducing terminal Galalpha(1,3)Gal carbohydrates, such as that which occurs in the xenotransplantation epitope Galalpha(1,3)Galbeta(1,4)GlcNAc and the branched blood group B determinant Galalpha(1,3)[Fucalpha(1,2)]Gal. Polyporus squamosus Ricin B-related lectin (PSL) is a lectin specific for glycans terminating with the sequence Neu5Acalpha2-6Galbeta. Like MOA, PSL is a calcium-dependent cysteine protease. Both MOA and PSL contain an N-terminal ricin B-type lectin domain and a C-terminal agglutinin domain. The ricin B-type lectin domain is a beta-trefoil domain, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467295 [Multi-domain] Cd Length: 145 Bit Score: 41.56 E-value: 1.45e-03
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beta-trefoil_Ricin_AgaB34-like | cd23458 | ricin B-type lectin domain, beta-trefoil fold, found in Agarivorans albus beta-agarase AgaB34 ... |
2867-2926 | 1.66e-03 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Agarivorans albus beta-agarase AgaB34 and similar proteins; Beta-agarase (EC 3.2.1.81), also called endo-beta-agarase, is a glycosyl hydrolase family 16 (GH16) member that catalyzes the hydrolysis of (1->4)-beta-D-galactosidic linkages in agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea (marine red algae), giving the tetramer as the predominant product. Beta-agarase contains a ricin B-type lectin domain that adopts a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site. Pssm-ID: 467336 [Multi-domain] Cd Length: 135 Bit Score: 41.15 E-value: 1.66e-03
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beta-trefoil_Ricin_1,3Gal43A | cd23446 | ricin B-type lectin domain, beta-trefoil fold, found in Clostridium thermocellum 1,3Gal43A and ... |
2870-2950 | 3.83e-03 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Clostridium thermocellum 1,3Gal43A and similar proteins; 1,3Gal43A is an exo-beta-1,3-galactanase that specifically hydrolyses beta-1,3 glycosidic bonds in galactose-based oligosaccharides or polysaccharides, and shows maximum activity towards beta-1,3-galactotetraose. 1,3Gal43A consists of a glycoside hydrolase family 43 (GH43) catalytic domain, a CBM13 carbohydrate binding domain, and a type I dockerin domain. The CBM13 domain is also known as the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site. Pssm-ID: 467324 [Multi-domain] Cd Length: 137 Bit Score: 40.06 E-value: 3.83e-03
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beta-trefoil_Ricin_AgaB34-like | cd23458 | ricin B-type lectin domain, beta-trefoil fold, found in Agarivorans albus beta-agarase AgaB34 ... |
2868-2926 | 7.10e-03 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Agarivorans albus beta-agarase AgaB34 and similar proteins; Beta-agarase (EC 3.2.1.81), also called endo-beta-agarase, is a glycosyl hydrolase family 16 (GH16) member that catalyzes the hydrolysis of (1->4)-beta-D-galactosidic linkages in agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea (marine red algae), giving the tetramer as the predominant product. Beta-agarase contains a ricin B-type lectin domain that adopts a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site. Pssm-ID: 467336 [Multi-domain] Cd Length: 135 Bit Score: 39.23 E-value: 7.10e-03
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