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Conserved domains on  [gi|46048300|ref|NP_705776|]
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WASH complex subunit 5 [Mus musculus]

Protein Classification

WASH complex subunit 5( domain architecture ID 10563167)

WASH complex subunit 5 (WASHC5) acts as a component of the WASH core complex that functions as a nucleation-promoting factor (NPF) at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Strumpellin pfam10266
Hereditary spastic paraplegia protein strumpellin; This is a family of proteins conserved from ...
23-1103 0e+00

Hereditary spastic paraplegia protein strumpellin; This is a family of proteins conserved from plants to humans, in which two closely situated point mutations in the human protein lead to the condition of hereditary spastic paraplegia. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteriztic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies.


:

Pssm-ID: 463035  Cd Length: 1082  Bit Score: 1864.19  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300     23 NAIIAEVLRLSEFIPAVFLlkdRADQQRYGDIIFDFSYFKGPEFWESKLEAKPELQDLDEEFRENNIEIVTRFYLAFQSV 102
Cdd:pfam10266    1 NAIIAELLRLSDYIPEVFR---KPERSKYGDIIFDFSYFKNPEVFEKKIESSPELQELDEEFRENHLELLTRFYLLFESI 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    103 HKYIVDLNRYLDDLNEGVYIQQTLETVLLSEDGKQLLCEALYLYGVMLLVIDQKIEGEVRERMLVSYYRYSAARSSaDSN 182
Cdd:pfam10266   78 YKYVTDLNRFLEELNEGVYIQQTLETVLLDEEGKQLLCEALYLYGVMLLLLDHKIPGPVRERLLVSYYRYSGSSSD-DSN 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    183 MDDICKLLRSTGYS-SQPGAKRPPNYPESYFQRVPINETFISMVIGRLRSDDIYNQVSAYPLPEHRSTALANQAAMLYVI 261
Cdd:pfam10266  157 IDDVCKLLRSTGYSpGSPGSKRPSNYPEEYFARVPLPKKFVDMVIGRLRSDDIYNQLSAYPLPEHRSTALATQAAMLYVI 236
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    262 LYFEPSILHTHQAKMREIVDKYFPDNWVISIYMGITVNLADAWEPYKAAKTALNNTLDLANVKEQASRYASVSDRVRAQV 341
Cdd:pfam10266  237 LFFSPDILHNQTAVMREIVDKFFPDNWVISIYMGITVNLSDAWEPYKAARTALSNTLEPSNVKELAQRHSSKLKKLLKKI 316
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    342 QQFLKEGYLREEVLLDNIPRLLNCLRDCNVAIRWLMLHTADSA-CDPNNKRLRQIKDQILADSRYNPKILFQLLLDTAQF 420
Cdd:pfam10266  317 QEYLKEGVLTEEYVLDNINKLLNLVRECNVTLRWLMLHTTTSAtGSENSKKCKQLRDLVLSESKFSPDDLFQLLLNTSQL 396
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    421 EFILKEMFKQMLSEKQSKWEHYKKEGSERMTELADVFSGVKPLTRVEKNENLQAWFREISKQILSLNYDDSTAAGRKTVQ 500
Cdd:pfam10266  397 EFELKEMFKSLLDEKEERWEKSKKEAVERMKELSEYFSGTKPLTRIEKNESLQQWFGEMSKQIESLDYEDSTAAGRKIQQ 476
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    501 LIQALEEVQEFHQLESNLQVCQFLADTRKFLHQMIRTINIKEEVLITVQIIGDLSFAWQLIDSFTSIMQESIRVNPSMVT 580
Cdd:pfam10266  477 LIQALEEVQEFHQLESNLQVKQFLQETRKLLHQMIRTINIKEEVLITIQIISDFSYAWELIDSYTELMQKGIKKDPSLVL 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    581 KLRATFLKLASALDLPLLRINQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLLKIIKLQTHDIMEVPTRLDKDK 660
Cdd:pfam10266  557 KLRATFLKLASALELPLLRINQAESPDLVSVSEYYSSELVSYVRKVLQIIPESMFEILAQIIKLQTNVLKELPTRLEKDK 636
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    661 LRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRVAFALHRGLIFNPRAKPSELMPK 740
Cdd:pfam10266  637 LKEYAQLEERYQLAKLTHSISVFTEGILAMKTTLVGVIEVDPKQLLEDGIRKELVKQIAKALHSGLIFNPKGKTSELLTK 716
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    741 LKELGATMDGFHRSFEYIQDYVSIYGLKIWQEEVSRIINYNVEQECNNFLRTKIQDWQSMYQSTHIPIPKFAPVDE-SIT 819
Cdd:pfam10266  717 LSALGNRMDGFRRSFEYIQDYVNIQGLKIWQEEFSRIINYNVEQECNAFLRKKVLDWQSLYQSKSIPIPRFPPLDGgSVN 796
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    820 FIGRLCREILRITDPKMTCYIDQLNTWYDVKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKII 899
Cdd:pfam10266  797 FIGRLARELLRITDPKTTVYLEQTSGWYDIKTGKEVLGLKTFSLLQEALGPAGLTGLDRLLSFMIVKELQTLLSFLQKEL 876
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    900 LKERTVQETLKMLMSAVNPLKSIVANSSKVYLSAITKTQKIWSAYLEAIMKVGQMQILRQQIANELNSSCRFDSRHLAAA 979
Cdd:pfam10266  877 SKDKSWLETLASLKKELEPLSSIPENPLKIYDQLISKISKSWPTLLDVLLKIGQLQLLRRQIAFELNSSCKFDSKNLFAA 956
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    980 LDNLNKALLADIEAHYRDP-SLPYPKEDNTLLYEITAYLEAAGIHNPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQYNK 1058
Cdd:pfam10266  957 LETLNEALLLDISRHYRDPdSKPYPEEDNELLFELSKYLEYAGISDPLRKIYITTKPLPHISLFLFLFTLSQLPKLQYDK 1036
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*.
gi 46048300   1059 NLG-MVCRKPADPVDWPPLVLGLLTLLKQFHSRYTEQFLALIGQFI 1103
Cdd:pfam10266 1037 NLGsLVPKKKKDPLDGCPLVVGLATLLRQFHPSVTQLFLSYLGQYV 1082
 
Name Accession Description Interval E-value
Strumpellin pfam10266
Hereditary spastic paraplegia protein strumpellin; This is a family of proteins conserved from ...
23-1103 0e+00

Hereditary spastic paraplegia protein strumpellin; This is a family of proteins conserved from plants to humans, in which two closely situated point mutations in the human protein lead to the condition of hereditary spastic paraplegia. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteriztic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies.


Pssm-ID: 463035  Cd Length: 1082  Bit Score: 1864.19  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300     23 NAIIAEVLRLSEFIPAVFLlkdRADQQRYGDIIFDFSYFKGPEFWESKLEAKPELQDLDEEFRENNIEIVTRFYLAFQSV 102
Cdd:pfam10266    1 NAIIAELLRLSDYIPEVFR---KPERSKYGDIIFDFSYFKNPEVFEKKIESSPELQELDEEFRENHLELLTRFYLLFESI 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    103 HKYIVDLNRYLDDLNEGVYIQQTLETVLLSEDGKQLLCEALYLYGVMLLVIDQKIEGEVRERMLVSYYRYSAARSSaDSN 182
Cdd:pfam10266   78 YKYVTDLNRFLEELNEGVYIQQTLETVLLDEEGKQLLCEALYLYGVMLLLLDHKIPGPVRERLLVSYYRYSGSSSD-DSN 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    183 MDDICKLLRSTGYS-SQPGAKRPPNYPESYFQRVPINETFISMVIGRLRSDDIYNQVSAYPLPEHRSTALANQAAMLYVI 261
Cdd:pfam10266  157 IDDVCKLLRSTGYSpGSPGSKRPSNYPEEYFARVPLPKKFVDMVIGRLRSDDIYNQLSAYPLPEHRSTALATQAAMLYVI 236
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    262 LYFEPSILHTHQAKMREIVDKYFPDNWVISIYMGITVNLADAWEPYKAAKTALNNTLDLANVKEQASRYASVSDRVRAQV 341
Cdd:pfam10266  237 LFFSPDILHNQTAVMREIVDKFFPDNWVISIYMGITVNLSDAWEPYKAARTALSNTLEPSNVKELAQRHSSKLKKLLKKI 316
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    342 QQFLKEGYLREEVLLDNIPRLLNCLRDCNVAIRWLMLHTADSA-CDPNNKRLRQIKDQILADSRYNPKILFQLLLDTAQF 420
Cdd:pfam10266  317 QEYLKEGVLTEEYVLDNINKLLNLVRECNVTLRWLMLHTTTSAtGSENSKKCKQLRDLVLSESKFSPDDLFQLLLNTSQL 396
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    421 EFILKEMFKQMLSEKQSKWEHYKKEGSERMTELADVFSGVKPLTRVEKNENLQAWFREISKQILSLNYDDSTAAGRKTVQ 500
Cdd:pfam10266  397 EFELKEMFKSLLDEKEERWEKSKKEAVERMKELSEYFSGTKPLTRIEKNESLQQWFGEMSKQIESLDYEDSTAAGRKIQQ 476
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    501 LIQALEEVQEFHQLESNLQVCQFLADTRKFLHQMIRTINIKEEVLITVQIIGDLSFAWQLIDSFTSIMQESIRVNPSMVT 580
Cdd:pfam10266  477 LIQALEEVQEFHQLESNLQVKQFLQETRKLLHQMIRTINIKEEVLITIQIISDFSYAWELIDSYTELMQKGIKKDPSLVL 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    581 KLRATFLKLASALDLPLLRINQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLLKIIKLQTHDIMEVPTRLDKDK 660
Cdd:pfam10266  557 KLRATFLKLASALELPLLRINQAESPDLVSVSEYYSSELVSYVRKVLQIIPESMFEILAQIIKLQTNVLKELPTRLEKDK 636
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    661 LRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRVAFALHRGLIFNPRAKPSELMPK 740
Cdd:pfam10266  637 LKEYAQLEERYQLAKLTHSISVFTEGILAMKTTLVGVIEVDPKQLLEDGIRKELVKQIAKALHSGLIFNPKGKTSELLTK 716
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    741 LKELGATMDGFHRSFEYIQDYVSIYGLKIWQEEVSRIINYNVEQECNNFLRTKIQDWQSMYQSTHIPIPKFAPVDE-SIT 819
Cdd:pfam10266  717 LSALGNRMDGFRRSFEYIQDYVNIQGLKIWQEEFSRIINYNVEQECNAFLRKKVLDWQSLYQSKSIPIPRFPPLDGgSVN 796
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    820 FIGRLCREILRITDPKMTCYIDQLNTWYDVKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKII 899
Cdd:pfam10266  797 FIGRLARELLRITDPKTTVYLEQTSGWYDIKTGKEVLGLKTFSLLQEALGPAGLTGLDRLLSFMIVKELQTLLSFLQKEL 876
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    900 LKERTVQETLKMLMSAVNPLKSIVANSSKVYLSAITKTQKIWSAYLEAIMKVGQMQILRQQIANELNSSCRFDSRHLAAA 979
Cdd:pfam10266  877 SKDKSWLETLASLKKELEPLSSIPENPLKIYDQLISKISKSWPTLLDVLLKIGQLQLLRRQIAFELNSSCKFDSKNLFAA 956
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    980 LDNLNKALLADIEAHYRDP-SLPYPKEDNTLLYEITAYLEAAGIHNPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQYNK 1058
Cdd:pfam10266  957 LETLNEALLLDISRHYRDPdSKPYPEEDNELLFELSKYLEYAGISDPLRKIYITTKPLPHISLFLFLFTLSQLPKLQYDK 1036
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*.
gi 46048300   1059 NLG-MVCRKPADPVDWPPLVLGLLTLLKQFHSRYTEQFLALIGQFI 1103
Cdd:pfam10266 1037 NLGsLVPKKKKDPLDGCPLVVGLATLLRQFHPSVTQLFLSYLGQYV 1082
 
Name Accession Description Interval E-value
Strumpellin pfam10266
Hereditary spastic paraplegia protein strumpellin; This is a family of proteins conserved from ...
23-1103 0e+00

Hereditary spastic paraplegia protein strumpellin; This is a family of proteins conserved from plants to humans, in which two closely situated point mutations in the human protein lead to the condition of hereditary spastic paraplegia. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteriztic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies.


Pssm-ID: 463035  Cd Length: 1082  Bit Score: 1864.19  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300     23 NAIIAEVLRLSEFIPAVFLlkdRADQQRYGDIIFDFSYFKGPEFWESKLEAKPELQDLDEEFRENNIEIVTRFYLAFQSV 102
Cdd:pfam10266    1 NAIIAELLRLSDYIPEVFR---KPERSKYGDIIFDFSYFKNPEVFEKKIESSPELQELDEEFRENHLELLTRFYLLFESI 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    103 HKYIVDLNRYLDDLNEGVYIQQTLETVLLSEDGKQLLCEALYLYGVMLLVIDQKIEGEVRERMLVSYYRYSAARSSaDSN 182
Cdd:pfam10266   78 YKYVTDLNRFLEELNEGVYIQQTLETVLLDEEGKQLLCEALYLYGVMLLLLDHKIPGPVRERLLVSYYRYSGSSSD-DSN 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    183 MDDICKLLRSTGYS-SQPGAKRPPNYPESYFQRVPINETFISMVIGRLRSDDIYNQVSAYPLPEHRSTALANQAAMLYVI 261
Cdd:pfam10266  157 IDDVCKLLRSTGYSpGSPGSKRPSNYPEEYFARVPLPKKFVDMVIGRLRSDDIYNQLSAYPLPEHRSTALATQAAMLYVI 236
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    262 LYFEPSILHTHQAKMREIVDKYFPDNWVISIYMGITVNLADAWEPYKAAKTALNNTLDLANVKEQASRYASVSDRVRAQV 341
Cdd:pfam10266  237 LFFSPDILHNQTAVMREIVDKFFPDNWVISIYMGITVNLSDAWEPYKAARTALSNTLEPSNVKELAQRHSSKLKKLLKKI 316
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    342 QQFLKEGYLREEVLLDNIPRLLNCLRDCNVAIRWLMLHTADSA-CDPNNKRLRQIKDQILADSRYNPKILFQLLLDTAQF 420
Cdd:pfam10266  317 QEYLKEGVLTEEYVLDNINKLLNLVRECNVTLRWLMLHTTTSAtGSENSKKCKQLRDLVLSESKFSPDDLFQLLLNTSQL 396
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    421 EFILKEMFKQMLSEKQSKWEHYKKEGSERMTELADVFSGVKPLTRVEKNENLQAWFREISKQILSLNYDDSTAAGRKTVQ 500
Cdd:pfam10266  397 EFELKEMFKSLLDEKEERWEKSKKEAVERMKELSEYFSGTKPLTRIEKNESLQQWFGEMSKQIESLDYEDSTAAGRKIQQ 476
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    501 LIQALEEVQEFHQLESNLQVCQFLADTRKFLHQMIRTINIKEEVLITVQIIGDLSFAWQLIDSFTSIMQESIRVNPSMVT 580
Cdd:pfam10266  477 LIQALEEVQEFHQLESNLQVKQFLQETRKLLHQMIRTINIKEEVLITIQIISDFSYAWELIDSYTELMQKGIKKDPSLVL 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    581 KLRATFLKLASALDLPLLRINQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLLKIIKLQTHDIMEVPTRLDKDK 660
Cdd:pfam10266  557 KLRATFLKLASALELPLLRINQAESPDLVSVSEYYSSELVSYVRKVLQIIPESMFEILAQIIKLQTNVLKELPTRLEKDK 636
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    661 LRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRVAFALHRGLIFNPRAKPSELMPK 740
Cdd:pfam10266  637 LKEYAQLEERYQLAKLTHSISVFTEGILAMKTTLVGVIEVDPKQLLEDGIRKELVKQIAKALHSGLIFNPKGKTSELLTK 716
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    741 LKELGATMDGFHRSFEYIQDYVSIYGLKIWQEEVSRIINYNVEQECNNFLRTKIQDWQSMYQSTHIPIPKFAPVDE-SIT 819
Cdd:pfam10266  717 LSALGNRMDGFRRSFEYIQDYVNIQGLKIWQEEFSRIINYNVEQECNAFLRKKVLDWQSLYQSKSIPIPRFPPLDGgSVN 796
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    820 FIGRLCREILRITDPKMTCYIDQLNTWYDVKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKII 899
Cdd:pfam10266  797 FIGRLARELLRITDPKTTVYLEQTSGWYDIKTGKEVLGLKTFSLLQEALGPAGLTGLDRLLSFMIVKELQTLLSFLQKEL 876
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    900 LKERTVQETLKMLMSAVNPLKSIVANSSKVYLSAITKTQKIWSAYLEAIMKVGQMQILRQQIANELNSSCRFDSRHLAAA 979
Cdd:pfam10266  877 SKDKSWLETLASLKKELEPLSSIPENPLKIYDQLISKISKSWPTLLDVLLKIGQLQLLRRQIAFELNSSCKFDSKNLFAA 956
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46048300    980 LDNLNKALLADIEAHYRDP-SLPYPKEDNTLLYEITAYLEAAGIHNPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQYNK 1058
Cdd:pfam10266  957 LETLNEALLLDISRHYRDPdSKPYPEEDNELLFELSKYLEYAGISDPLRKIYITTKPLPHISLFLFLFTLSQLPKLQYDK 1036
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*.
gi 46048300   1059 NLG-MVCRKPADPVDWPPLVLGLLTLLKQFHSRYTEQFLALIGQFI 1103
Cdd:pfam10266 1037 NLGsLVPKKKKDPLDGCPLVVGLATLLRQFHPSVTQLFLSYLGQYV 1082
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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