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Conserved domains on  [gi|301129225|ref|NP_619522|]
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blood group Rh(CE) polypeptide isoform 3 [Homo sapiens]

Protein Classification

ammonium transporter family protein( domain architecture ID 518)

ammonium transporter family protein similar to Dictyostelium discoideum ammonium transporter 3 that mediates the import of ammonium in prespore cells

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ammonium_transp super family cl03012
Ammonium Transporter Family;
18-157 9.56e-14

Ammonium Transporter Family;


The actual alignment was detected with superfamily member pfam00909:

Pssm-ID: 445985  Cd Length: 399  Bit Score: 70.40  E-value: 9.56e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301129225   18 LTLEAALILLFYF---FTHYDASLEDQKGLVA-SYQVGQDL--TVMAALGLGFLTSNFRRHSWSSVAFNLFMLALGVQWA 91
Cdd:pfam00909   1 AFILLSAALVIFMqpgFALLESGLVRSKNVLNiLYKNFQDVaiGVLAYWLFGYSLAFGKRYGFSGFIGNLGVSAAGIQWG 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 301129225   92 ILLDG--FLSQFPPGKVVITLFSIRLATMSAMSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVI 157
Cdd:pfam00909  81 TLPDGlfFLFQMMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLV 148
 
Name Accession Description Interval E-value
Ammonium_transp pfam00909
Ammonium Transporter Family;
18-157 9.56e-14

Ammonium Transporter Family;


Pssm-ID: 395729  Cd Length: 399  Bit Score: 70.40  E-value: 9.56e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301129225   18 LTLEAALILLFYF---FTHYDASLEDQKGLVA-SYQVGQDL--TVMAALGLGFLTSNFRRHSWSSVAFNLFMLALGVQWA 91
Cdd:pfam00909   1 AFILLSAALVIFMqpgFALLESGLVRSKNVLNiLYKNFQDVaiGVLAYWLFGYSLAFGKRYGFSGFIGNLGVSAAGIQWG 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 301129225   92 ILLDG--FLSQFPPGKVVITLFSIRLATMSAMSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVI 157
Cdd:pfam00909  81 TLPDGlfFLFQMMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLV 148
 
Name Accession Description Interval E-value
Ammonium_transp pfam00909
Ammonium Transporter Family;
18-157 9.56e-14

Ammonium Transporter Family;


Pssm-ID: 395729  Cd Length: 399  Bit Score: 70.40  E-value: 9.56e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301129225   18 LTLEAALILLFYF---FTHYDASLEDQKGLVA-SYQVGQDL--TVMAALGLGFLTSNFRRHSWSSVAFNLFMLALGVQWA 91
Cdd:pfam00909   1 AFILLSAALVIFMqpgFALLESGLVRSKNVLNiLYKNFQDVaiGVLAYWLFGYSLAFGKRYGFSGFIGNLGVSAAGIQWG 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 301129225   92 ILLDG--FLSQFPPGKVVITLFSIRLATMSAMSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVI 157
Cdd:pfam00909  81 TLPDGlfFLFQMMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLV 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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