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Conserved domains on  [gi|170650649|ref|NP_573484|]
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mitochondrial sodium/calcium exchanger protein isoform 1 precursor [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN03151 super family cl33648
cation/calcium exchanger; Provisional
63-580 3.02e-55

cation/calcium exchanger; Provisional


The actual alignment was detected with superfamily member PLN03151:

Pssm-ID: 215604 [Multi-domain]  Cd Length: 650  Bit Score: 197.68  E-value: 3.02e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649  63 DRCDFVRRNPDCrSEAGYLDYLEGIFCyfppNLLPLAITLYVF---WLLYLFLILGVTAAKFFCPNLSAISTNLKLSHNV 139
Cdd:PLN03151 105 DQCEFLKAHPIC-SSGGFFDYLKFFYC----SCEDFRILGYAVlgvWLVALFYLLGNTAADYFCCSLEKLSKLLRLPPTV 179
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 140 AGVTFLAFGNGAPDIFSALVAFSDPRTAGLAIGALFGAGVLVTTVVAGGITIL---HPFMAASRPFLRDIAFYMVAVFLT 216
Cdd:PLN03151 180 AGVTLLPLGNGAPDVFASIAAFVGKDAGEVGLNSVLGGAVFVTCVVVGIVSLCvadKEVQIDKRCFIRDLCFFLFTLVSL 259
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 217 FTALYLGRITLTWALGYLGLYVFYVVTV---IICTWVYQRQRSRSLVHSISETPELLSESEEDQMSSNTNSYDYGDEYRP 293
Cdd:PLN03151 260 LVILMVGKVTVGGAIAFVSIYVVYAFLVaanEILRKHARRLKLDVVTPLLPVQGSIFSPSVEEDESMYSPLLESDTESDV 339
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 294 LLLGRE-------TTVQI----LIQALNPLDYRK---WR---------TQSISwRVLKVVKLPVEFLLLLTVPVVDPDKd 350
Cdd:PLN03151 340 PRLQTSlpqwmwaSNVAIysnhFAKGSVHDEERPpwgWTdegaevessLFSCS-KLFSLLEMPLTIPRRLTIPIVEEDR- 417
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 351 drnWKRPLNCLQLVISPLVLVL--TLQSGVygiyEIGGLLPVWAVVVIVGTALASVTFFATSNREPPR---LHWLFAflG 425
Cdd:PLN03151 418 ---WSKTYAVASASLAPVLLAFlwSSQDDV----SLQARIAAYFIGVAIGSTLGFLAYKYTEPDRPPRrflIPWVLG--G 488
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 426 FLTSALWINAAATEVVNILRSLGVIFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYP--RMAFSACFGGIIFNILVGV 503
Cdd:PLN03151 489 FIMSIVWFYMIANELVALLVAFGVIFGINPSILGLTVLAWGNSMGDLMSNVALAMNGGDgvQIAMSGCYAGPMFNTLVGL 568
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 170650649 504 GLGCLLQIIRNHVVEVKLEPDGLLVWVLaSALGLSLIFSLVSVPLQCFQLSKAYGLCLLLFYICFLVVVLLTEFGVI 580
Cdd:PLN03151 569 GMSMLLGAWSKSPESYMLPEDSSLFYTM-GFLVSGLIWALVVLPRNDMRPNKTLGVGLIALYLIFLTFRVSTAMGFI 644
 
Name Accession Description Interval E-value
PLN03151 PLN03151
cation/calcium exchanger; Provisional
63-580 3.02e-55

cation/calcium exchanger; Provisional


Pssm-ID: 215604 [Multi-domain]  Cd Length: 650  Bit Score: 197.68  E-value: 3.02e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649  63 DRCDFVRRNPDCrSEAGYLDYLEGIFCyfppNLLPLAITLYVF---WLLYLFLILGVTAAKFFCPNLSAISTNLKLSHNV 139
Cdd:PLN03151 105 DQCEFLKAHPIC-SSGGFFDYLKFFYC----SCEDFRILGYAVlgvWLVALFYLLGNTAADYFCCSLEKLSKLLRLPPTV 179
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 140 AGVTFLAFGNGAPDIFSALVAFSDPRTAGLAIGALFGAGVLVTTVVAGGITIL---HPFMAASRPFLRDIAFYMVAVFLT 216
Cdd:PLN03151 180 AGVTLLPLGNGAPDVFASIAAFVGKDAGEVGLNSVLGGAVFVTCVVVGIVSLCvadKEVQIDKRCFIRDLCFFLFTLVSL 259
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 217 FTALYLGRITLTWALGYLGLYVFYVVTV---IICTWVYQRQRSRSLVHSISETPELLSESEEDQMSSNTNSYDYGDEYRP 293
Cdd:PLN03151 260 LVILMVGKVTVGGAIAFVSIYVVYAFLVaanEILRKHARRLKLDVVTPLLPVQGSIFSPSVEEDESMYSPLLESDTESDV 339
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 294 LLLGRE-------TTVQI----LIQALNPLDYRK---WR---------TQSISwRVLKVVKLPVEFLLLLTVPVVDPDKd 350
Cdd:PLN03151 340 PRLQTSlpqwmwaSNVAIysnhFAKGSVHDEERPpwgWTdegaevessLFSCS-KLFSLLEMPLTIPRRLTIPIVEEDR- 417
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 351 drnWKRPLNCLQLVISPLVLVL--TLQSGVygiyEIGGLLPVWAVVVIVGTALASVTFFATSNREPPR---LHWLFAflG 425
Cdd:PLN03151 418 ---WSKTYAVASASLAPVLLAFlwSSQDDV----SLQARIAAYFIGVAIGSTLGFLAYKYTEPDRPPRrflIPWVLG--G 488
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 426 FLTSALWINAAATEVVNILRSLGVIFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYP--RMAFSACFGGIIFNILVGV 503
Cdd:PLN03151 489 FIMSIVWFYMIANELVALLVAFGVIFGINPSILGLTVLAWGNSMGDLMSNVALAMNGGDgvQIAMSGCYAGPMFNTLVGL 568
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 170650649 504 GLGCLLQIIRNHVVEVKLEPDGLLVWVLaSALGLSLIFSLVSVPLQCFQLSKAYGLCLLLFYICFLVVVLLTEFGVI 580
Cdd:PLN03151 569 GMSMLLGAWSKSPESYMLPEDSSLFYTM-GFLVSGLIWALVVLPRNDMRPNKTLGVGLIALYLIFLTFRVSTAMGFI 644
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
421-574 9.55e-23

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 94.59  E-value: 9.55e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649  421 FAFLGFLTSALWINAAATEVVNILRSLGVIFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSACFGGIIFNIL 500
Cdd:pfam01699   1 LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNIL 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 170650649  501 VGVGLGCLLQIIRNHVVEVKLEpdgLLVWVLASALGLSLIFSLVSVPLqcFQLSKAYGLCLLLFYICFLVVVLL 574
Cdd:pfam01699  81 LVLGLSALIGPVKVDSLLLKLD---LGVLLLVALLLLLLLLLLLLPLF--GRLSRFEGLVLLLLYIVYLVFQIV 149
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
91-260 2.41e-14

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 76.57  E-value: 2.41e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649    91 FPPNLLPLA------ITLYVFWLLYLFLILGVTAAKFFCPNLSAISTNLKLSHNVAGVTFLAFGNGAPDIFSALVA-FSD 163
Cdd:TIGR00927  442 YPPDLFSVEerrqgwVVLHIFGMMYVFVALAIVCDEYFVPALGVITDKLQISEDVAGATFMAAGGSAPELFTSLIGvFIS 521
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649   164 PRTAGlaIGALFGAGVLVTTVVAGGITILhpfmaaSR--------PFLRDIAFYMVAVFLtFTALYLGRITLTW-ALGYL 234
Cdd:TIGR00927  522 HSNVG--IGTIVGSAVFNILFVIGTCALF------SReilnltwwPLFRDVSFYILDLMM-LILFFLDSLIAWWeSLLLL 592
                          170       180       190
                   ....*....|....*....|....*....|
gi 170650649   235 GLYVFYVVTVI----ICTWVyQRQRSRSLV 260
Cdd:TIGR00927  593 LAYALYVFTMKwnkqIELWV-KEQLSRRPV 621
ECM27 COG0530
Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];
126-268 1.12e-12

Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];


Pssm-ID: 440296 [Multi-domain]  Cd Length: 293  Bit Score: 68.62  E-value: 1.12e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 126 LSAISTNLKLSHNVAGVTFLAFGNGAPDIFSALVAFSDPrTAGLAIGALFGAGVLVTTVVAGGITILHPFMAASRPFLRD 205
Cdd:COG0530    8 ADALARRLGISPLVIGLTIVAFGTSLPELAVSVTAALDG-SPDIAVGNVVGSNIANILLILGLAALIRPLAVDRRVLRRD 86
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 170650649 206 IAFYMVAVFLTFTALYLGRITLTWALGYLGLYVFYVVtviictWVYQRQRSRSLVHSISETPE 268
Cdd:COG0530   87 LPFLLLASLLLLALLLDGTLSRIDGVILLLLYVLYLY------YLIRRARKEPAWEEVEEELE 143
 
Name Accession Description Interval E-value
PLN03151 PLN03151
cation/calcium exchanger; Provisional
63-580 3.02e-55

cation/calcium exchanger; Provisional


Pssm-ID: 215604 [Multi-domain]  Cd Length: 650  Bit Score: 197.68  E-value: 3.02e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649  63 DRCDFVRRNPDCrSEAGYLDYLEGIFCyfppNLLPLAITLYVF---WLLYLFLILGVTAAKFFCPNLSAISTNLKLSHNV 139
Cdd:PLN03151 105 DQCEFLKAHPIC-SSGGFFDYLKFFYC----SCEDFRILGYAVlgvWLVALFYLLGNTAADYFCCSLEKLSKLLRLPPTV 179
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 140 AGVTFLAFGNGAPDIFSALVAFSDPRTAGLAIGALFGAGVLVTTVVAGGITIL---HPFMAASRPFLRDIAFYMVAVFLT 216
Cdd:PLN03151 180 AGVTLLPLGNGAPDVFASIAAFVGKDAGEVGLNSVLGGAVFVTCVVVGIVSLCvadKEVQIDKRCFIRDLCFFLFTLVSL 259
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 217 FTALYLGRITLTWALGYLGLYVFYVVTV---IICTWVYQRQRSRSLVHSISETPELLSESEEDQMSSNTNSYDYGDEYRP 293
Cdd:PLN03151 260 LVILMVGKVTVGGAIAFVSIYVVYAFLVaanEILRKHARRLKLDVVTPLLPVQGSIFSPSVEEDESMYSPLLESDTESDV 339
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 294 LLLGRE-------TTVQI----LIQALNPLDYRK---WR---------TQSISwRVLKVVKLPVEFLLLLTVPVVDPDKd 350
Cdd:PLN03151 340 PRLQTSlpqwmwaSNVAIysnhFAKGSVHDEERPpwgWTdegaevessLFSCS-KLFSLLEMPLTIPRRLTIPIVEEDR- 417
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 351 drnWKRPLNCLQLVISPLVLVL--TLQSGVygiyEIGGLLPVWAVVVIVGTALASVTFFATSNREPPR---LHWLFAflG 425
Cdd:PLN03151 418 ---WSKTYAVASASLAPVLLAFlwSSQDDV----SLQARIAAYFIGVAIGSTLGFLAYKYTEPDRPPRrflIPWVLG--G 488
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 426 FLTSALWINAAATEVVNILRSLGVIFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYP--RMAFSACFGGIIFNILVGV 503
Cdd:PLN03151 489 FIMSIVWFYMIANELVALLVAFGVIFGINPSILGLTVLAWGNSMGDLMSNVALAMNGGDgvQIAMSGCYAGPMFNTLVGL 568
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 170650649 504 GLGCLLQIIRNHVVEVKLEPDGLLVWVLaSALGLSLIFSLVSVPLQCFQLSKAYGLCLLLFYICFLVVVLLTEFGVI 580
Cdd:PLN03151 569 GMSMLLGAWSKSPESYMLPEDSSLFYTM-GFLVSGLIWALVVLPRNDMRPNKTLGVGLIALYLIFLTFRVSTAMGFI 644
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
421-574 9.55e-23

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 94.59  E-value: 9.55e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649  421 FAFLGFLTSALWINAAATEVVNILRSLGVIFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSACFGGIIFNIL 500
Cdd:pfam01699   1 LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNIL 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 170650649  501 VGVGLGCLLQIIRNHVVEVKLEpdgLLVWVLASALGLSLIFSLVSVPLqcFQLSKAYGLCLLLFYICFLVVVLL 574
Cdd:pfam01699  81 LVLGLSALIGPVKVDSLLLKLD---LGVLLLVALLLLLLLLLLLLPLF--GRLSRFEGLVLLLLYIVYLVFQIV 149
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
103-245 1.38e-15

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 74.18  E-value: 1.38e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649  103 YVFWLLYLFLILGVTAAKFFCPNLSAISTNLKLSHNVAGVTFLAFGNGAPDIFSALVAFSDPRtAGLAIGALFGAGVLVT 182
Cdd:pfam01699   1 LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALRGE-PDLALGNVIGSNIFNI 79
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 170650649  183 TVVAG------GITILHPFMAASRPFLRDIAFYMVAVFLTFTALYLGRITLTWALGYLGLYVFYVVTVI 245
Cdd:pfam01699  80 LLVLGlsaligPVKVDSLLLKLDLGVLLLVALLLLLLLLLLLLPLFGRLSRFEGLVLLLLYIVYLVFQI 148
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
91-260 2.41e-14

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 76.57  E-value: 2.41e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649    91 FPPNLLPLA------ITLYVFWLLYLFLILGVTAAKFFCPNLSAISTNLKLSHNVAGVTFLAFGNGAPDIFSALVA-FSD 163
Cdd:TIGR00927  442 YPPDLFSVEerrqgwVVLHIFGMMYVFVALAIVCDEYFVPALGVITDKLQISEDVAGATFMAAGGSAPELFTSLIGvFIS 521
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649   164 PRTAGlaIGALFGAGVLVTTVVAGGITILhpfmaaSR--------PFLRDIAFYMVAVFLtFTALYLGRITLTW-ALGYL 234
Cdd:TIGR00927  522 HSNVG--IGTIVGSAVFNILFVIGTCALF------SReilnltwwPLFRDVSFYILDLMM-LILFFLDSLIAWWeSLLLL 592
                          170       180       190
                   ....*....|....*....|....*....|
gi 170650649   235 GLYVFYVVTVI----ICTWVyQRQRSRSLV 260
Cdd:TIGR00927  593 LAYALYVFTMKwnkqIELWV-KEQLSRRPV 621
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
412-580 3.47e-14

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 76.19  E-value: 3.47e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649   412 REPPRLHWLFAFLGfltSALWINAAATEVVNILRSLGVIFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSAC 491
Cdd:TIGR00927  927 RQEARKFFVITFLG---SIMWIAMFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSS 1003
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649   492 FGGIIFNILVGVGLGCLLQIIRNHVVEVKLEPDGLLVWVLasALGLSLIFSLVSVPLQCFQLSKAYGLCLLLFYICFLVV 571
Cdd:TIGR00927 1004 VGSNIFDITVGLPVPWLLFSLINGLQPVPVSSNGLFCAIV--LLFLMLLFVISSIASCKWRMNKILGFTMFLLYFVFLII 1081

                   ....*....
gi 170650649   572 VLLTEFGVI 580
Cdd:TIGR00927 1082 SVMLEDRII 1090
ECM27 COG0530
Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];
126-268 1.12e-12

Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];


Pssm-ID: 440296 [Multi-domain]  Cd Length: 293  Bit Score: 68.62  E-value: 1.12e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 126 LSAISTNLKLSHNVAGVTFLAFGNGAPDIFSALVAFSDPrTAGLAIGALFGAGVLVTTVVAGGITILHPFMAASRPFLRD 205
Cdd:COG0530    8 ADALARRLGISPLVIGLTIVAFGTSLPELAVSVTAALDG-SPDIAVGNVVGSNIANILLILGLAALIRPLAVDRRVLRRD 86
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 170650649 206 IAFYMVAVFLTFTALYLGRITLTWALGYLGLYVFYVVtviictWVYQRQRSRSLVHSISETPE 268
Cdd:COG0530   87 LPFLLLASLLLLALLLDGTLSRIDGVILLLLYVLYLY------YLIRRARKEPAWEEVEEELE 143
TIGR00367 TIGR00367
K+-dependent Na+/Ca+ exchanger related-protein; This model models a family of bacterial and ...
102-276 1.49e-10

K+-dependent Na+/Ca+ exchanger related-protein; This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General]


Pssm-ID: 273039 [Multi-domain]  Cd Length: 307  Bit Score: 62.73  E-value: 1.49e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649  102 LYVFWLLYLFLILGVTAAKFFCPNLSAISTNLKLSHNVAGVTFLAFGNGAPDIFSALVAfSDPRTAGLAIGALFGAGVLV 181
Cdd:TIGR00367   1 LLLIGYLILGLILLIYGADLFVKSSVRIARHLGISPLIIGVTVVAIGTSLPELFTSLIA-SLMGQPDIGVGNVIGSNIFN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649  182 TTVVAGGITILHPFMAASRPFLRDIAFYMVAVFLTFTALYLGRITLTWALGYLGLYVFYVvtviicTWVYQRQRSrslVH 261
Cdd:TIGR00367  80 ILLILGLSAIFSPIIVDKDWLRRDILFYLLVSILLLFFGLDGQISRIDGVVLLILYIVYL------LFLVKNERW---VK 150
                         170
                  ....*....|....*
gi 170650649  262 SISETPELLSESEED 276
Cdd:TIGR00367 151 YDTYTEENLDENNRR 165
ECM27 COG0530
Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];
106-244 4.62e-07

Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];


Pssm-ID: 440296 [Multi-domain]  Cd Length: 293  Bit Score: 51.67  E-value: 4.62e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 106 WLLYLFLILG----VTAAKFFCPNLSAISTNLKLSHNVAGVTFLAFGNGAPDIFSALVAFSDpRTAGLAIGALFGAGVLV 181
Cdd:COG0530  151 WKALLLLVLGlallVVGARLLVDGAVEIARALGVSELVIGLTIVAIGTSLPELATSIVAARK-GEDDLAVGNIIGSNIFN 229
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 170650649 182 TTVVAGGITILHPFMAASRPFLRDIAFyMVAVFLTFTALYL--GRITLTWALGYLGLYVFYVVTV 244
Cdd:COG0530  230 ILLVLGIGALITPIPVDPAVLSFDLPV-MLAATLLLLGLLRtgGRIGRWEGLLLLALYLAYLALL 293
lysS PRK02983
bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX;
384-544 4.07e-06

bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX;


Pssm-ID: 235095 [Multi-domain]  Cd Length: 1094  Bit Score: 49.96  E-value: 4.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649  384 IGGLLPVWAVVVIVGTALASVT-----FFATSNREPPRLHWLFAF-LGFLTSAL-------WINAAATEVVNILRSLGVI 450
Cdd:PRK02983   17 TVGVIATLSLLASVSPLLRWIIrvpreFVDDYLFNFPDTSLAWAFvLALLAAALrrrkraaWWVLLAYLVLAALLNVALL 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649  451 FRLSNTVLGLTLLAWGNSIGDAFSDFTLA-------------RQGYPRMAFSACFGGIIFNILVGVGLgcllqiirNHVV 517
Cdd:PRK02983   97 ALGVNTAAETFGENSLSIIGFAVHVVAIVllvlarrefparvRRGALRKALAVLVGGLAVGILVGWGL--------VELF 168
                         170       180
                  ....*....|....*....|....*..
gi 170650649  518 EVKLEPDGLLVWVLASALGLSLIFSLV 544
Cdd:PRK02983  169 PGSLAPPERLGWALNRVVGFALADPDL 195
ECM27 COG0530
Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];
446-573 5.67e-06

Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];


Pssm-ID: 440296 [Multi-domain]  Cd Length: 293  Bit Score: 48.21  E-value: 5.67e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170650649 446 SLGVIFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSACFGGIIFNILVGVGLGCLlqiIRNHVVEVKlepdg 525
Cdd:COG0530   10 ALARRLGISPLVIGLTIVAFGTSLPELAVSVTAALDGSPDIAVGNVVGSNIANILLILGLAAL---IRPLAVDRR----- 81
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 170650649 526 LLVWVLASALGLSLIFSLVSVPlqcFQLSKAYGLCLLLFYICFLVVVL 573
Cdd:COG0530   82 VLRRDLPFLLLASLLLLALLLD---GTLSRIDGVILLLLYVLYLYYLI 126
ManZ COG3716
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IID component ...
82-118 9.23e-03

Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IID component [Carbohydrate transport and metabolism];


Pssm-ID: 442930  Cd Length: 271  Bit Score: 38.19  E-value: 9.23e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 170650649  82 DYLEGIFcyfpPNLLPLAITLYVFWLL-----YLFLILGVTA 118
Cdd:COG3716  222 DILDKIM----PGLLPLLLTLLVYWLLkkkvsPTKIILGLIV 259
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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