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Conserved domains on  [gi|32189434|ref|NP_536344|]
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immunoglobulin superfamily member 8 precursor [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
V-set super family cl46292
Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 ...
 40-147 2.59e-08

Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.


The actual alignment was detected with superfamily member pfam07686:

Pssm-ID: 462230  Cd Length: 109  Bit Score: 52.08  E-value: 2.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434    40 GTAVSISCNVSDYEGPAQQDFEWFMYRPEAPATSLGIVSTKDSQFSyaVFGPRVASGDLQVQrlkgDSVVLKIARLQAQD 119
Cdd:pfam07686  11 GGSVTLPCTYSSSMSEASTSVYWYRQPPGKGPTFLIAYYSNGSEEG--VKKGRFSGRGDPSN----GDGSLTIQNLTLSD 84

                          90       100
                  ....*....|....*....|....*...
gi 32189434   120 SGFYECYTPSTDTQYLGNysaKVELRVL 147
Cdd:pfam07686  85 SGTYTCAVIPSGEGVFGK---GTRLTVL 109
Ig super family cl11960
Immunoglobulin domain; The members here are composed of the immunoglobulin (Ig) domain found ...
 449-543 1.33e-05

Immunoglobulin domain; The members here are composed of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, including T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, including butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E, and D strands in one sheet and A', G, F, C, C' and C" in the other. The structures in C1-set are smaller than those in the V-set; they have one beta sheet that is formed by strands A, B, E, and D and the other by strands G, F, C, and C'. Moreover, a C1-set Ig domain contains a short C' strand (three residues) and lacks A' and C" strand. Unlike other Ig domain sets, C2-set structures do not have a D strand. Like the V-set Ig domains, members of the I-set have a discontinuous A strand, but lack a C" strand.


The actual alignment was detected with superfamily member cd00099:

Pssm-ID: 472250 [Multi-domain]  Cd Length: 111  Bit Score: 44.63  E-value: 1.33e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434 449 TVYRGETASLLCNISVRGGPPGLrlaaSWWVERPEEGElstgpaQLVGGVGQDGVAELGVRPGGgpVSVELVGPRSHRLR 528
Cdd:cd00099   9 SVQEGESVTLSCEVSSSFSSTYI----YWYRQKPGQGP------EFLIYLSSSKGKTKGGVPGR--FSGSRDGTSSFSLT 76

                        90
                ....*....|....*
gi 32189434 529 LHGLGPEDEGIYHCA 543
Cdd:cd00099  77 ISNLQPEDSGTYYCA 91
Ig super family cl11960
Immunoglobulin domain; The members here are composed of the immunoglobulin (Ig) domain found ...
 316-417 1.32e-04

Immunoglobulin domain; The members here are composed of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, including T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, including butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E, and D strands in one sheet and A', G, F, C, C' and C" in the other. The structures in C1-set are smaller than those in the V-set; they have one beta sheet that is formed by strands A, B, E, and D and the other by strands G, F, C, and C'. Moreover, a C1-set Ig domain contains a short C' strand (three residues) and lacks A' and C" strand. Unlike other Ig domain sets, C2-set structures do not have a D strand. Like the V-set Ig domains, members of the I-set have a discontinuous A strand, but lack a C" strand.


The actual alignment was detected with superfamily member cd00099:

Pssm-ID: 472250 [Multi-domain]  Cd Length: 111  Bit Score: 41.55  E-value: 1.32e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434 316 PGEPLELLCNVSGALPPpgrhaaYSVGW-EMAPAGAPgpgRLVAQLDTEGiGSLGPGYEDRHIAmEKVASRTYRLRLEAA 394
Cdd:cd00099  12 EGESVTLSCEVSSSFSS------TYIYWyRQKPGQGP---EFLIYLSSSK-GKTKGGVPGRFSG-SRDGTSSFSLTISNL 80

                        90       100
                ....*....|....*....|....*....
gi 32189434 395 RPADAGTYRCLAKA------YVRGSGTRL 417
Cdd:cd00099  81 QPEDSGTYYCAVSEsggtdkLTFGSGTRL 109
 
Name Accession Description Interval E-value
V-set pfam07686
Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 ...
 40-147 2.59e-08

Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.


Pssm-ID: 462230  Cd Length: 109  Bit Score: 52.08  E-value: 2.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434    40 GTAVSISCNVSDYEGPAQQDFEWFMYRPEAPATSLGIVSTKDSQFSyaVFGPRVASGDLQVQrlkgDSVVLKIARLQAQD 119
Cdd:pfam07686  11 GGSVTLPCTYSSSMSEASTSVYWYRQPPGKGPTFLIAYYSNGSEEG--VKKGRFSGRGDPSN----GDGSLTIQNLTLSD 84

                          90       100
                  ....*....|....*....|....*...
gi 32189434   120 SGFYECYTPSTDTQYLGNysaKVELRVL 147
Cdd:pfam07686  85 SGTYTCAVIPSGEGVFGK---GTRLTVL 109
IgV cd00099
Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin ...
 449-543 1.33e-05

Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin variable domain (IgV). The IgV family contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology, and are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E and, D strands in one sheet and A', G, F, C, C', and C" strands in the other.


Pssm-ID: 409355 [Multi-domain]  Cd Length: 111  Bit Score: 44.63  E-value: 1.33e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434 449 TVYRGETASLLCNISVRGGPPGLrlaaSWWVERPEEGElstgpaQLVGGVGQDGVAELGVRPGGgpVSVELVGPRSHRLR 528
Cdd:cd00099   9 SVQEGESVTLSCEVSSSFSSTYI----YWYRQKPGQGP------EFLIYLSSSKGKTKGGVPGR--FSGSRDGTSSFSLT 76

                        90
                ....*....|....*
gi 32189434 529 LHGLGPEDEGIYHCA 543
Cdd:cd00099  77 ISNLQPEDSGTYYCA 91
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
 33-146 1.18e-04

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 40.95  E-value: 1.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434     33 GPLYRVAGTAVSISCNVSDYEGPaqqDFEWFMYRPEAPATSLGIVSTKDsqfsyavfgprvasgdlqvqrlkGDSVVLKI 112
Cdd:smart00410   2 PSVTVKEGESVTLSCEASGSPPP---EVTWYKQGGKLLAESGRFSVSRS-----------------------GSTSTLTI 55

                           90       100       110
                   ....*....|....*....|....*....|....
gi 32189434    113 ARLQAQDSGFYECYTpstdTQYLGNYSAKVELRV 146
Cdd:smart00410  56 SNVTPEDSGTYTCAA----TNSSGSASSGTTLTV 85
IgV cd00099
Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin ...
 316-417 1.32e-04

Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin variable domain (IgV). The IgV family contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology, and are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E and, D strands in one sheet and A', G, F, C, C', and C" strands in the other.


Pssm-ID: 409355 [Multi-domain]  Cd Length: 111  Bit Score: 41.55  E-value: 1.32e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434 316 PGEPLELLCNVSGALPPpgrhaaYSVGW-EMAPAGAPgpgRLVAQLDTEGiGSLGPGYEDRHIAmEKVASRTYRLRLEAA 394
Cdd:cd00099  12 EGESVTLSCEVSSSFSS------TYIYWyRQKPGQGP---EFLIYLSSSK-GKTKGGVPGRFSG-SRDGTSSFSLTISNL 80

                        90       100
                ....*....|....*....|....*....
gi 32189434 395 RPADAGTYRCLAKA------YVRGSGTRL 417
Cdd:cd00099  81 QPEDSGTYYCAVSEsggtdkLTFGSGTRL 109
IgV cd00099
Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin ...
 39-136 1.73e-03

Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin variable domain (IgV). The IgV family contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology, and are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E and, D strands in one sheet and A', G, F, C, C', and C" strands in the other.


Pssm-ID: 409355 [Multi-domain]  Cd Length: 111  Bit Score: 38.47  E-value: 1.73e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434  39 AGTAVSISCNVSDYEGPAQqdFEWFMYRPEAPATSLGIVSTKDSQFSYAVFGPRVASGDlqvqrlKGDSVVLKIARLQAQ 118
Cdd:cd00099  12 EGESVTLSCEVSSSFSSTY--IYWYRQKPGQGPEFLIYLSSSKGKTKGGVPGRFSGSRD------GTSSFSLTISNLQPE 83

                        90       100
                ....*....|....*....|.
gi 32189434 119 DSGFYEC---YTPSTDTQYLG 136
Cdd:cd00099  84 DSGTYYCavsESGGTDKLTFG 104
 
Name Accession Description Interval E-value
V-set pfam07686
Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 ...
 40-147 2.59e-08

Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.


Pssm-ID: 462230  Cd Length: 109  Bit Score: 52.08  E-value: 2.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434    40 GTAVSISCNVSDYEGPAQQDFEWFMYRPEAPATSLGIVSTKDSQFSyaVFGPRVASGDLQVQrlkgDSVVLKIARLQAQD 119
Cdd:pfam07686  11 GGSVTLPCTYSSSMSEASTSVYWYRQPPGKGPTFLIAYYSNGSEEG--VKKGRFSGRGDPSN----GDGSLTIQNLTLSD 84

                          90       100
                  ....*....|....*....|....*...
gi 32189434   120 SGFYECYTPSTDTQYLGNysaKVELRVL 147
Cdd:pfam07686  85 SGTYTCAVIPSGEGVFGK---GTRLTVL 109
IgV cd00099
Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin ...
 449-543 1.33e-05

Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin variable domain (IgV). The IgV family contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology, and are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E and, D strands in one sheet and A', G, F, C, C', and C" strands in the other.


Pssm-ID: 409355 [Multi-domain]  Cd Length: 111  Bit Score: 44.63  E-value: 1.33e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434 449 TVYRGETASLLCNISVRGGPPGLrlaaSWWVERPEEGElstgpaQLVGGVGQDGVAELGVRPGGgpVSVELVGPRSHRLR 528
Cdd:cd00099   9 SVQEGESVTLSCEVSSSFSSTYI----YWYRQKPGQGP------EFLIYLSSSKGKTKGGVPGR--FSGSRDGTSSFSLT 76

                        90
                ....*....|....*
gi 32189434 529 LHGLGPEDEGIYHCA 543
Cdd:cd00099  77 ISNLQPEDSGTYYCA 91
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
 33-146 1.18e-04

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 40.95  E-value: 1.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434     33 GPLYRVAGTAVSISCNVSDYEGPaqqDFEWFMYRPEAPATSLGIVSTKDsqfsyavfgprvasgdlqvqrlkGDSVVLKI 112
Cdd:smart00410   2 PSVTVKEGESVTLSCEASGSPPP---EVTWYKQGGKLLAESGRFSVSRS-----------------------GSTSTLTI 55

                           90       100       110
                   ....*....|....*....|....*....|....
gi 32189434    113 ARLQAQDSGFYECYTpstdTQYLGNYSAKVELRV 146
Cdd:smart00410  56 SNVTPEDSGTYTCAA----TNSSGSASSGTTLTV 85
IgV cd00099
Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin ...
 316-417 1.32e-04

Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin variable domain (IgV). The IgV family contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology, and are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E and, D strands in one sheet and A', G, F, C, C', and C" strands in the other.


Pssm-ID: 409355 [Multi-domain]  Cd Length: 111  Bit Score: 41.55  E-value: 1.32e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434 316 PGEPLELLCNVSGALPPpgrhaaYSVGW-EMAPAGAPgpgRLVAQLDTEGiGSLGPGYEDRHIAmEKVASRTYRLRLEAA 394
Cdd:cd00099  12 EGESVTLSCEVSSSFSS------TYIYWyRQKPGQGP---EFLIYLSSSK-GKTKGGVPGRFSG-SRDGTSSFSLTISNL 80

                        90       100
                ....*....|....*....|....*....
gi 32189434 395 RPADAGTYRCLAKA------YVRGSGTRL 417
Cdd:cd00099  81 QPEDSGTYYCAVSEsggtdkLTFGSGTRL 109
IgV cd00099
Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin ...
 39-136 1.73e-03

Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin variable domain (IgV). The IgV family contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology, and are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E and, D strands in one sheet and A', G, F, C, C', and C" strands in the other.


Pssm-ID: 409355 [Multi-domain]  Cd Length: 111  Bit Score: 38.47  E-value: 1.73e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434  39 AGTAVSISCNVSDYEGPAQqdFEWFMYRPEAPATSLGIVSTKDSQFSYAVFGPRVASGDlqvqrlKGDSVVLKIARLQAQ 118
Cdd:cd00099  12 EGESVTLSCEVSSSFSSTY--IYWYRQKPGQGPEFLIYLSSSKGKTKGGVPGRFSGSRD------GTSSFSLTISNLQPE 83

                        90       100
                ....*....|....*....|.
gi 32189434 119 DSGFYEC---YTPSTDTQYLG 136
Cdd:cd00099  84 DSGTYYCavsESGGTDKLTFG 104
IGv smart00406
Immunoglobulin V-Type;
43-125 1.98e-03

Immunoglobulin V-Type;


Pssm-ID: 214650  Cd Length: 81  Bit Score: 37.36  E-value: 1.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434     43 VSISCNVSDYEGPAQQdFEWFMYRPEAPATSLGIVSTKDSQFSYAVFGPRVA-SGDLQvqrlkGDSVVLKIARLQAQDSG 121
Cdd:smart00406   2 VTLSCKFSGSTFSSYY-VSWVRQPPGKGLEWLGYIGSNGSSYYQESYKGRFTiSKDTS-----KNDVSLTISNLRVEDTG 75


                   ....
gi 32189434    122 FYEC 125
Cdd:smart00406  76 TYYC 79
Ig_3 pfam13927
Immunoglobulin domain; This family contains immunoglobulin-like domains.
 27-125 9.48e-03

Immunoglobulin domain; This family contains immunoglobulin-like domains.


Pssm-ID: 464046 [Multi-domain]  Cd Length: 78  Bit Score: 35.62  E-value: 9.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32189434    27 QVHVPRGPLYRVAGTAVSISCNVSDYEGPaqqDFEWFmyrpeapatslgivstKDsqfsyavfGPRVASGDLQVQRLKGD 106
Cdd:pfam13927   3 VITVSPSSVTVREGETVTLTCEATGSPPP---TITWY----------------KN--------GEPISSGSTRSRSLSGS 55

                          90
                  ....*....|....*....
gi 32189434   107 SVVLKIARLQAQDSGFYEC 125
Cdd:pfam13927  56 NSTLTISNVTRSDAGTYTC 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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