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Conserved domains on  [gi|116292168|ref|NP_115923|]
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protein KRBA1 isoform 1 [Homo sapiens]

Protein Classification

PHA03247 and KRBA1 domain-containing protein( domain architecture ID 10633813)

PHA03247 and KRBA1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 195-237 2.29e-08

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


:

Pssm-ID: 464615  Cd Length: 44  Bit Score: 50.87  E-value: 2.29e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 116292168   195 GTSEAGISPGNSPLQGLINCLKEILVPGPRHPETSPSFLPPLP 237
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQPATSLSPPPQ 43
KRBA1 super family cl21135
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 371-415 2.49e-03

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


The actual alignment was detected with superfamily member pfam15287:

Pssm-ID: 464615  Cd Length: 44  Bit Score: 36.62  E-value: 2.49e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 116292168   371 GPEAQAASASSSPLEALEACLKGIPPNGSSPSQlPPTSCSQNPQP 415
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQ-PATSLSPPPQP 44
KRBA1 super family cl21135
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 492-523 3.38e-03

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


The actual alignment was detected with superfamily member pfam15287:

Pssm-ID: 464615  Cd Length: 44  Bit Score: 36.24  E-value: 3.38e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 116292168   492 GSPPGSSPLQGLENCLKEIPVPVLRPAWPCSS 523
Cdd:pfam15287    6 GASPGSSPLQGLINCLKEILVPGPQHPQPATS 37
 
Name Accession Description Interval E-value
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 195-237 2.29e-08

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 50.87  E-value: 2.29e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 116292168   195 GTSEAGISPGNSPLQGLINCLKEILVPGPRHPETSPSFLPPLP 237
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQPATSLSPPPQ 43
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 371-415 2.49e-03

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 36.62  E-value: 2.49e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 116292168   371 GPEAQAASASSSPLEALEACLKGIPPNGSSPSQlPPTSCSQNPQP 415
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQ-PATSLSPPPQP 44
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 492-523 3.38e-03

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 36.24  E-value: 3.38e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 116292168   492 GSPPGSSPLQGLENCLKEIPVPVLRPAWPCSS 523
Cdd:pfam15287    6 GASPGSSPLQGLINCLKEILVPGPQHPQPATS 37
 
Name Accession Description Interval E-value
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 195-237 2.29e-08

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 50.87  E-value: 2.29e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 116292168   195 GTSEAGISPGNSPLQGLINCLKEILVPGPRHPETSPSFLPPLP 237
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQPATSLSPPPQ 43
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 371-415 2.49e-03

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 36.62  E-value: 2.49e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 116292168   371 GPEAQAASASSSPLEALEACLKGIPPNGSSPSQlPPTSCSQNPQP 415
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQ-PATSLSPPPQP 44
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 492-523 3.38e-03

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 36.24  E-value: 3.38e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 116292168   492 GSPPGSSPLQGLENCLKEIPVPVLRPAWPCSS 523
Cdd:pfam15287    6 GASPGSSPLQGLINCLKEILVPGPQHPQPATS 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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