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Conserved domains on  [gi|13385960|ref|NP_080744|]
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ATP synthase F(0) complex subunit C2, mitochondrial precursor [Mus musculus]

Protein Classification

ATPase C chain family protein( domain architecture ID 10009638)

ATPase C chain family protein is a component of the mitochondrial membrane ATP synthase (F(1)F(o) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP9 MTH00222
ATP synthase F0 subunit 9; Provisional
 72-146 1.01e-38

ATP synthase F0 subunit 9; Provisional


:

Pssm-ID: 164765 [Multi-domain]  Cd Length: 77  Bit Score: 125.73  E-value: 1.01e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13385960   72 DIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 146
Cdd:MTH00222   3 EILTAAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFAL 77
 
Name Accession Description Interval E-value
ATP9 MTH00222
ATP synthase F0 subunit 9; Provisional
 72-146 1.01e-38

ATP synthase F0 subunit 9; Provisional


Pssm-ID: 164765 [Multi-domain]  Cd Length: 77  Bit Score: 125.73  E-value: 1.01e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13385960   72 DIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 146
Cdd:MTH00222   3 EILTAAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFAL 77
ATP-synt_Fo_c_ATP5G3 cd18182
ATP synthase F(0) complex subunit C3 (ATP5G3) and similar proteins; ATP5G3 (also called ATP ...
 78-142 8.67e-32

ATP synthase F(0) complex subunit C3 (ATP5G3) and similar proteins; ATP5G3 (also called ATP synthase lipid-binding protein, ATP synthase proteolipid P3, ATP synthase proton-transporting mitochondrial F(o) complex subunit C3, ATPase protein 9, or ATPase subunit c) transports protons across the inner mitochondrial membrane to the F1-ATPase protruding on the matrix side, resulting in the generation of ATP.


Pssm-ID: 349422  Cd Length: 65  Bit Score: 107.60  E-value: 8.67e-32
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13385960  78 KFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI 142
Cdd:cd18182   1 KYIGAGLATIGLAGAGIGIGNVFGSLINGVARNPSAKQQLFTYAILGFALTEAIGLFALMVAFLI 65
AtpE COG0636
FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy ...
 74-145 2.62e-15

FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440401  Cd Length: 75  Bit Score: 65.91  E-value: 2.62e-15
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 13385960  74 DTAAKFIGAG-AATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 145
Cdd:COG0636   2 EAAASAIGAGlAIGLAAIGAGIGIGLAGGKALEAIARQPEAAGKLQTTMFIGAALIEALAIYALVIALILLFA 74
ATP-synt_C pfam00137
ATP synthase subunit C;
80-142 1.07e-09

ATP synthase subunit C;


Pssm-ID: 459687  Cd Length: 60  Bit Score: 51.17  E-value: 1.07e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 13385960    80 IGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPslkqQLFSYAILGFALSEAMGLFCLMVAFLI 142
Cdd:pfam00137   1 LGAGLAVgLAALGSGIGQGIAGAAAIEAIARQP----KLFGKMLIGAALAEALAIYGLVVALLL 60
ATP_synt_c TIGR01260
ATP synthase, F0 subunit c; This model describes the subunit c in F1/F0-ATP synthase, a ...
 91-145 1.71e-03

ATP synthase, F0 subunit c; This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 130327  Cd Length: 58  Bit Score: 34.69  E-value: 1.71e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 13385960    91 GSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 145
Cdd:TIGR01260   4 GAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA 58
 
Name Accession Description Interval E-value
ATP9 MTH00222
ATP synthase F0 subunit 9; Provisional
 72-146 1.01e-38

ATP synthase F0 subunit 9; Provisional


Pssm-ID: 164765 [Multi-domain]  Cd Length: 77  Bit Score: 125.73  E-value: 1.01e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13385960   72 DIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 146
Cdd:MTH00222   3 EILTAAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFAL 77
ATP-synt_Fo_c_ATP5G3 cd18182
ATP synthase F(0) complex subunit C3 (ATP5G3) and similar proteins; ATP5G3 (also called ATP ...
 78-142 8.67e-32

ATP synthase F(0) complex subunit C3 (ATP5G3) and similar proteins; ATP5G3 (also called ATP synthase lipid-binding protein, ATP synthase proteolipid P3, ATP synthase proton-transporting mitochondrial F(o) complex subunit C3, ATPase protein 9, or ATPase subunit c) transports protons across the inner mitochondrial membrane to the F1-ATPase protruding on the matrix side, resulting in the generation of ATP.


Pssm-ID: 349422  Cd Length: 65  Bit Score: 107.60  E-value: 8.67e-32
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13385960  78 KFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI 142
Cdd:cd18182   1 KYIGAGLATIGLAGAGIGIGNVFGSLINGVARNPSAKQQLFTYAILGFALTEAIGLFALMVAFLI 65
PRK07558 PRK07558
F0F1 ATP synthase subunit C; Validated
 76-145 8.17e-21

F0F1 ATP synthase subunit C; Validated


Pssm-ID: 181027  Cd Length: 74  Bit Score: 80.01  E-value: 8.17e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13385960   76 AAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 145
Cdd:PRK07558   5 ALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA 74
AtpE COG0636
FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy ...
 74-145 2.62e-15

FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440401  Cd Length: 75  Bit Score: 65.91  E-value: 2.62e-15
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 13385960  74 DTAAKFIGAG-AATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 145
Cdd:COG0636   2 EAAASAIGAGlAIGLAAIGAGIGIGLAGGKALEAIARQPEAAGKLQTTMFIGAALIEALAIYALVIALILLFA 74
PRK07159 PRK07159
F0F1 ATP synthase subunit C; Validated
 79-144 1.19e-11

F0F1 ATP synthase subunit C; Validated


Pssm-ID: 235949  Cd Length: 100  Bit Score: 57.60  E-value: 1.19e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 13385960   79 FIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 144
Cdd:PRK07159  33 YIGAGLAMIGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIF 98
ATP-synt_Fo_c cd18121
membrane-bound Fo complex of F-ATP synthase, subunit c; Subunit c (also called subunit 9, or ...
 79-142 1.33e-11

membrane-bound Fo complex of F-ATP synthase, subunit c; Subunit c (also called subunit 9, or proteolipid) of the Fo complex of F-ATP synthase. The F-ATP synthase (also called FoF1-ATPase) consists of two structural domains: the F1 (factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons though the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Methanosarcina acetivorans.


Pssm-ID: 349414  Cd Length: 65  Bit Score: 56.24  E-value: 1.33e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13385960  79 FIGAG-AATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI 142
Cdd:cd18121   1 ALGAGlAIGLGAIGPGIGIGLAAAKALEGIARQPEAAGKIRTTMIIGLALIESLAIYALVIALIL 65
ATP-synt_Fo_Vo_Ao_c cd00313
ATP synthase, membrane-bound Fo/Vo/Ao complexes, subunit c; Subunit c of the Fo/Vo/Ao complex ...
 79-142 6.07e-11

ATP synthase, membrane-bound Fo/Vo/Ao complexes, subunit c; Subunit c of the Fo/Vo/Ao complex is the main transmembrane subunit of F-, V- or A-type family of ATP synthases with rotary motors. These ion-transporting rotary ATP synthases are composed of two linked multi-subunit complexes: the F1, V1, and A1 complexes contains three copies each of the alpha and beta subunits that form the soluble catalytic core, which is involved in ATP synthesis/hydrolysis, and the Fo, Vo, or Ao (oligomycin sensitive) complex that forms the membrane-embedded proton pore. The F-ATP synthases (also called FoF1-ATPases) are found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. F-ATPases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. The A-ATP synthase (AoA1-ATPases) is exclusively found in archaea and function like F-ATP synthase. Structurally, however, the A-ATP synthase is more closely related to the V-ATP synthase (vacuolar VoV1-ATPase), which is a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, F-, V-, and A-type synthases can function in both ATP synthesis and hydrolysis modes.


Pssm-ID: 349412 [Multi-domain]  Cd Length: 65  Bit Score: 54.32  E-value: 6.07e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13385960  79 FIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI 142
Cdd:cd00313   1 ALGAGLAIgLAAIGAGIGIGLAGAAALEAIARQPEAAGKIFTTMLIGLALIESLAIYGLVIAFLL 65
PRK13469 PRK13469
F0F1 ATP synthase subunit C; Provisional
 70-146 1.04e-09

F0F1 ATP synthase subunit C; Provisional


Pssm-ID: 184068  Cd Length: 79  Bit Score: 51.58  E-value: 1.04e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 13385960   70 SRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 146
Cdd:PRK13469   3 GKAFVMGMSAIGAGIAALAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFVN 79
ATP-synt_C pfam00137
ATP synthase subunit C;
80-142 1.07e-09

ATP synthase subunit C;


Pssm-ID: 459687  Cd Length: 60  Bit Score: 51.17  E-value: 1.07e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 13385960    80 IGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPslkqQLFSYAILGFALSEAMGLFCLMVAFLI 142
Cdd:pfam00137   1 LGAGLAVgLAALGSGIGQGIAGAAAIEAIARQP----KLFGKMLIGAALAEALAIYGLVVALLL 60
ATP-synt_Fo_c_NaATPase cd18184
F-type sodium ion-translocating ATP synthase and similar proteins; This family includes F-type ...
 80-142 7.11e-09

F-type sodium ion-translocating ATP synthase and similar proteins; This family includes F-type Na(+)-coupled ATP synthase and similar proteins.


Pssm-ID: 349424 [Multi-domain]  Cd Length: 65  Bit Score: 49.11  E-value: 7.11e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 13385960  80 IGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI 142
Cdd:cd18184   3 IGAGLAMIAGIGPGIGQGYAAGKAVEAVGRNPEAEGKIRSTMILGAAVAETTAIYGLIIALLL 65
PRK07874 PRK07874
ATP synthase F0 subunit C;
74-141 8.42e-08

ATP synthase F0 subunit C;


Pssm-ID: 169138  Cd Length: 80  Bit Score: 46.71  E-value: 8.42e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13385960   74 DTAAKFIGAGAATVGVA--GSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFL 141
Cdd:PRK07874  10 ATETTFTGLGAVGYGLAaiGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79
PRK13471 PRK13471
F0F1 ATP synthase subunit C; Provisional
 69-146 3.88e-06

F0F1 ATP synthase subunit C; Provisional


Pssm-ID: 184069  Cd Length: 85  Bit Score: 42.55  E-value: 3.88e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 13385960   69 ISRDIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 146
Cdd:PRK13471   7 LAQALILLGKYIGAGLCMgIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLVL 85
ATP-synt_Fo_c_ATPE cd18185
F-type proton-translocating ATPase subunit c (ATPE) and similar proteins; This family includes ...
 79-142 7.02e-06

F-type proton-translocating ATPase subunit c (ATPE) and similar proteins; This family includes subunit c of F-ATP synthase (also called ATP synthase F(o) sector subunit c, F-type ATPase subunit c, or F-ATPase subunit c) and similar proteins. It is a proton-translocating subunit of the ATP synthase encoded by gene atpE.


Pssm-ID: 349425  Cd Length: 65  Bit Score: 41.31  E-value: 7.02e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13385960  79 FIGAGAATVGVA-GSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI 142
Cdd:cd18185   1 LIAAGLAIGLAAiGAAIGDGLVGSKFIEGIARQPELRGKLRTNMFIGVGLVEAVPIIAVVIALLL 65
ATP-synt_Fo_c_ATPH cd18183
F-type proton-translocating ATP synthase (ATPH) and similar proteins; This family includes ...
 73-145 9.75e-05

F-type proton-translocating ATP synthase (ATPH) and similar proteins; This family includes subunit c of chloroplast F-ATP synthase (F1Fo-ATP synthase), also known as ATP synthase F(o) sector subunit c (also called ATPase subunit III, F-type ATPase subunit c, or F-ATPase subunit c)and similar proteins. It is a proton-translocating subunit of the ATP synthase encoded by gene atpH.


Pssm-ID: 349423  Cd Length: 75  Bit Score: 38.67  E-value: 9.75e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 13385960  73 IDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 145
Cdd:cd18183   1 LISAASVIAAGLAVgLAAIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 74
atpH CHL00061
ATP synthase CF0 C subunit
 73-145 3.76e-04

ATP synthase CF0 C subunit


Pssm-ID: 177001  Cd Length: 81  Bit Score: 37.00  E-value: 3.76e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13385960   73 IDTAAKFIGAGAAtVGVAGSGAGIG--TVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 145
Cdd:CHL00061   4 LISAASVIAAGLA-VGLASIGPGVGqgTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 77
PRK05880 PRK05880
F0F1 ATP synthase subunit C; Validated
 75-145 1.26e-03

F0F1 ATP synthase subunit C; Validated


Pssm-ID: 180303  Cd Length: 81  Bit Score: 35.57  E-value: 1.26e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 13385960   75 TAAKFIGAGAATVGVA-GSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMglFCLMVAFLILFA 145
Cdd:PRK05880   6 AAGALIGGGLIMAGGAiGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAA--YFINLAFMALFV 75
ATP_synt_c TIGR01260
ATP synthase, F0 subunit c; This model describes the subunit c in F1/F0-ATP synthase, a ...
 91-145 1.71e-03

ATP synthase, F0 subunit c; This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 130327  Cd Length: 58  Bit Score: 34.69  E-value: 1.71e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 13385960    91 GSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 145
Cdd:TIGR01260   4 GAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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