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Conserved domains on  [gi|21426853|ref|NP_079605|]
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dynein light chain Tctex-type protein 2B isoform 1 [Mus musculus]

Protein Classification

dynein light chain Tctex-type family protein( domain architecture ID 16901542)

dynein light chain Tctex-type family protein such as dynein light chain Tctex-type protein 2B, which acts as one of several non-catalytic accessory components of the cytoplasmic dynein 2 complex (dynein-2 complex), a motor protein complex that drives the movement of cargos along microtubules within cilia and flagella in concert with the intraflagellar transport (IFT) system

CATH:  3.30.1140.40
Gene Ontology:  GO:0007018|GO:0045505|GO:0005868
SCOP:  3000821

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DLC-like_TCTEX1D2 cd21459
dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 2 (TCTEX1D2) ...
40-143 7.00e-68

dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 2 (TCTEX1D2) and similar proteins; Tctex1 domain-containing protein 2 (TCTEX1D2) is required for proper retrograde ciliary transport. It associates with short-rib polydactyly syndrome proteins, such as Wdr34, Wdr60, and other dynein complex 1 and 2 subunits, and is required for ciliogenesis. TCTEX1D2 is a negative regulator of GLUT4 translocation and glucose uptake. The model corresponds to the dynein light chain (DLC)-like domain of TCTEX1D2.


:

Pssm-ID: 412007  Cd Length: 104  Bit Score: 200.40  E-value: 7.00e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853  40 RFRPSVVKDCIHTVLKEELASAEYSPDEMPQLTKRLSEMIKDKLKELGYDRYKMVVQVVIGEQRGEGVFMAARCFWDADT 119
Cdd:cd21459   1 KFRPSKVKEIIHEVLKEKLAGKTYDPEEAPQWTKEIADEIKDKLKELGFPRYKIVVQVVIGEQRGQGVRVGSRCLWDADT 80
                        90       100
                ....*....|....*....|....
gi 21426853 120 DNYTHDVFMNDSLFCVVAAFGCFY 143
Cdd:cd21459  81 DNYASEVFINDSLFCVATVFGVYY 104
 
Name Accession Description Interval E-value
DLC-like_TCTEX1D2 cd21459
dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 2 (TCTEX1D2) ...
40-143 7.00e-68

dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 2 (TCTEX1D2) and similar proteins; Tctex1 domain-containing protein 2 (TCTEX1D2) is required for proper retrograde ciliary transport. It associates with short-rib polydactyly syndrome proteins, such as Wdr34, Wdr60, and other dynein complex 1 and 2 subunits, and is required for ciliogenesis. TCTEX1D2 is a negative regulator of GLUT4 translocation and glucose uptake. The model corresponds to the dynein light chain (DLC)-like domain of TCTEX1D2.


Pssm-ID: 412007  Cd Length: 104  Bit Score: 200.40  E-value: 7.00e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853  40 RFRPSVVKDCIHTVLKEELASAEYSPDEMPQLTKRLSEMIKDKLKELGYDRYKMVVQVVIGEQRGEGVFMAARCFWDADT 119
Cdd:cd21459   1 KFRPSKVKEIIHEVLKEKLAGKTYDPEEAPQWTKEIADEIKDKLKELGFPRYKIVVQVVIGEQRGQGVRVGSRCLWDADT 80
                        90       100
                ....*....|....*....|....
gi 21426853 120 DNYTHDVFMNDSLFCVVAAFGCFY 143
Cdd:cd21459  81 DNYASEVFINDSLFCVATVFGVYY 104
Tctex-1 pfam03645
Tctex-1 family; Tctex-1 is a dynein light chain. It has been shown that Tctex-1 can bind to ...
46-139 1.89e-43

Tctex-1 family; Tctex-1 is a dynein light chain. It has been shown that Tctex-1 can bind to the cytoplasmic tail of rhodopsin. C-terminal rhodopsin mutations responsible for retinitis pigmentosa inhibit this interaction.


Pssm-ID: 461003  Cd Length: 96  Bit Score: 138.43  E-value: 1.89e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853    46 VKDCIHTVLKEELASAE-YSPDEMPQLTKRLSEMIKDKLKELGYDRYKMVVQVVIGEQRGEGVFMAARCFWDADTDNYTH 124
Cdd:pfam03645   2 VKEIIKEVLEEVLGGGEtYDHEKVPQWTKEISEEILDRLKELGFKRYKYIVNVTIGQKNGQGVHVASRCLWDPETDGYAS 81
                          90
                  ....*....|....*
gi 21426853   125 DVFMNDSLFCVVAAF 139
Cdd:pfam03645  82 YKFENKSLFAVVTVF 96
 
Name Accession Description Interval E-value
DLC-like_TCTEX1D2 cd21459
dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 2 (TCTEX1D2) ...
40-143 7.00e-68

dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 2 (TCTEX1D2) and similar proteins; Tctex1 domain-containing protein 2 (TCTEX1D2) is required for proper retrograde ciliary transport. It associates with short-rib polydactyly syndrome proteins, such as Wdr34, Wdr60, and other dynein complex 1 and 2 subunits, and is required for ciliogenesis. TCTEX1D2 is a negative regulator of GLUT4 translocation and glucose uptake. The model corresponds to the dynein light chain (DLC)-like domain of TCTEX1D2.


Pssm-ID: 412007  Cd Length: 104  Bit Score: 200.40  E-value: 7.00e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853  40 RFRPSVVKDCIHTVLKEELASAEYSPDEMPQLTKRLSEMIKDKLKELGYDRYKMVVQVVIGEQRGEGVFMAARCFWDADT 119
Cdd:cd21459   1 KFRPSKVKEIIHEVLKEKLAGKTYDPEEAPQWTKEIADEIKDKLKELGFPRYKIVVQVVIGEQRGQGVRVGSRCLWDADT 80
                        90       100
                ....*....|....*....|....
gi 21426853 120 DNYTHDVFMNDSLFCVVAAFGCFY 143
Cdd:cd21459  81 DNYASEVFINDSLFCVATVFGVYY 104
DLC-like_TCTEX1D cd21451
dynein light chain (DLC)-like domain found in the Tctex1 domain-containing protein (TCTEX1D) ...
41-141 3.87e-48

dynein light chain (DLC)-like domain found in the Tctex1 domain-containing protein (TCTEX1D) family; The Tctex1 domain-containing protein (TCTEX1D) family includes TCTEX1D1-4. TCTEX1D1 is a genetic modifier of disease progression in Duchenne muscular dystrophy (DMD). It can interact with ZMYND10 that stabilizes intermediate chain proteins in the cytoplasmic pre-assembly of dynein arms. TCTEX1D2 is required for proper retrograde ciliary transport. It associates with short-rib polydactyly syndrome proteins, such as Wdr34, Wdr60, and other dynein complex 1 and 2 subunits, and is required for ciliogenesis. TCTEX1D2 is a negative regulator of GLUT4 translocation and glucose uptake. TCTEX1D3, also called T-complex testis-specific protein 3, or T-complex-associated testis-expressed protein 3 (Tcte-3), may be an accessory component of axonemal dynein and cytoplasmic dynein 1. TCTEX1D4, also called protein N22.1, or Tctex-2-beta, is a novel protein phosphatase 1 (PPP1) interactor. It also interacts with ENG/endoglin, TGFBR2, and TGFBR3. The distribution of TCTEX1D4 in testis suggests its involvement in distinct functions, such as TGFbeta signaling at the blood-testis barrier and acrosome cap formation. The model corresponds to the dynein light chain (DLC)-like domain of TCTEX1Ds.


Pssm-ID: 411999  Cd Length: 101  Bit Score: 150.34  E-value: 3.87e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853  41 FRPSVVKDCIHTVLKEELASAEYSPDEMPQLTKRLSEMIKDKLKELGYDRYKMVVQVVIGEQRGEGVFMAARCFWDADTD 120
Cdd:cd21451   1 FNPEKVKKIIKEVLEERLENVTYDPEECAQLCKELSEEIKDRVKELGFDRYKIVVQVTIGEKKGQGVRVASRCLWDPETD 80
                        90       100
                ....*....|....*....|.
gi 21426853 121 NYTHDVFMNDSLFCVVAAFGC 141
Cdd:cd21451  81 NFASATFENESLFAVATVFGV 101
Tctex-1 pfam03645
Tctex-1 family; Tctex-1 is a dynein light chain. It has been shown that Tctex-1 can bind to ...
46-139 1.89e-43

Tctex-1 family; Tctex-1 is a dynein light chain. It has been shown that Tctex-1 can bind to the cytoplasmic tail of rhodopsin. C-terminal rhodopsin mutations responsible for retinitis pigmentosa inhibit this interaction.


Pssm-ID: 461003  Cd Length: 96  Bit Score: 138.43  E-value: 1.89e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853    46 VKDCIHTVLKEELASAE-YSPDEMPQLTKRLSEMIKDKLKELGYDRYKMVVQVVIGEQRGEGVFMAARCFWDADTDNYTH 124
Cdd:pfam03645   2 VKEIIKEVLEEVLGGGEtYDHEKVPQWTKEISEEILDRLKELGFKRYKYIVNVTIGQKNGQGVHVASRCLWDPETDGYAS 81
                          90
                  ....*....|....*
gi 21426853   125 DVFMNDSLFCVVAAF 139
Cdd:pfam03645  82 YKFENKSLFAVVTVF 96
DLC-like_TCTEX1D4 cd21461
dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 4 (TCTEX1D4) ...
40-143 1.83e-30

dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 4 (TCTEX1D4) and similar proteins; Tctex1 domain-containing protein 4 (TCTEX1D4), also called protein N22.1, or Tctex-2-beta, is a novel protein phosphatase 1 (PPP1) interactor. It also interacts with ENG/endoglin, TGFBR2 and TGFBR3. The distribution of TCTEX1D4 in testis suggests its involvement in distinct functions, such as TGFbeta signaling at the blood-testis barrier and acrosome cap formation. The model corresponds to the dynein light chain (DLC)-like domain of TCTEX1D4.


Pssm-ID: 412009  Cd Length: 114  Bit Score: 105.90  E-value: 1.83e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853  40 RFRPSVVKDCIHTVLKEELASAEYSPDEMPQLTKRLSEMIKDKLKELGYDRYKMVVQVVIGEQRGEGVFMAARCFWDADT 119
Cdd:cd21461  10 RFDASRVQQILEATLDSYLGGARYSPATCGQLSQGLSELVRSKVKDLSPPRYKLVCQVVLGQCGNQGLRVASRCLWDPER 89
                        90       100
                ....*....|....*....|....
gi 21426853 120 DNYTHDVFMNDSLFCVVAAFGCFY 143
Cdd:cd21461  90 DNFASASFQNASLFAVATVHGVYF 113
DLC-like_TCTEX1D3 cd21460
dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 3 (TCTEX1D3) ...
29-142 4.71e-30

dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 3 (TCTEX1D3) and similar proteins; Tctex1 domain-containing protein 3 (TCTEX1D3), also called T-complex testis-specific protein 3, or T-complex-associated testis-expressed protein 3 (Tcte-3), may be an accessory component of axonemal dynein and cytoplasmic dynein 1. The model corresponds to the dynein light chain (DLC)-like domain of TCTEX1D3.


Pssm-ID: 412008  Cd Length: 112  Bit Score: 104.72  E-value: 4.71e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853  29 NTYILRPifQQRFRPSVVKDCIHTVLKEELASAEYSPDEMPQLTKRLSEMIKDKLKELGYDRYKMVVQVVIGEQRGEGVF 108
Cdd:cd21460   1 NTYRLEP--LKKFQPHLVRKKAEEILKEKLKDIKYDADRCRSLSLSLAADILAAVKELGFDRYKYVVRVFLGEKTGQSVK 78
                        90       100       110
                ....*....|....*....|....*....|....
gi 21426853 109 MAARCFWDADTDNYTHDVFMNDSLFCVVAAFGCF 142
Cdd:cd21460  79 IASRAVWDTEKDNWVSATFENESLFAVALVFALY 112
DLC-like_SF cd21449
dynein light chain (DLC)-like domain superfamily; The superfamily corresponds to a class of ...
46-140 4.78e-29

dynein light chain (DLC)-like domain superfamily; The superfamily corresponds to a class of proteins containing a dynein light chain (DLC)-like domain with anti-parallel beta-sheet packed against an alpha-helical hairpin. DLC-like domain-containing proteins includes cytoplasmic dynein light chain DYNLL1 and DYNLL2, axonemal dynein light chain 4 (DNAL4), tegumental-allergen-like proteins (TALs), dynein light chain Tctex-type DYNLT1 and DYNLT3, as well as Tctex1 domain-containing proteins (TCTEX1D). Both DYNLL1 and DYNLL2 are non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. DNAL4 is a force generating protein of respiratory cilia. TALs may be involved in the transport of vesicles within the tegumental cytoplasm, probably within dynein motor complexes. DYNLT1 and DYNLT3, which contribute to the differential regulation of dynein cargo binding. They are non-catalytic accessory components of the cytoplasmic dynein 1 complex, which contains either DYNLT1 or DYNLT3, but not both. TCTEX1D family includes TCTEX1D1-4. TCTEX1D1 is a genetic modifier of disease progression in Duchenne muscular dystrophy (DMD). TCTEX1D2 is required for proper retrograde ciliary transport. TCTEX1D3 may be an accessory component of axonemal dynein and cytoplasmic dynein 1. TCTEX1D4 is a novel protein phosphatase 1 (PPP1) interactor.


Pssm-ID: 411997  Cd Length: 96  Bit Score: 101.65  E-value: 4.78e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853  46 VKDCIHTVLKEELASAEYSPDEMPQLTKRLSEMIKDKLKELGYDRYKMVVQVVIGEQRGEGVFMAARCFWDADTDNYTHD 125
Cdd:cd21449   2 IREIIKEVLESILDDKEYDPLKLKEIAKKISEEIKEKLKELSPSRYKYIVHVTISENNGQGIRADSGCLWDPDTDGFVSE 81
                        90
                ....*....|....*
gi 21426853 126 VFMNDSLFCVVAAFG 140
Cdd:cd21449  82 VYENDNIICTVTVFG 96
DLC-like_TCTEX1D1 cd21458
dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 1 (TCTEX1D1) ...
41-143 3.56e-27

dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 1 (TCTEX1D1) and similar proteins; Tctex1 domain-containing protein 1 (TCTEX1D1) is a genetic modifier of disease progression in Duchenne muscular dystrophy (DMD). It can interact with ZMYND10 that stabilizes intermediate chain proteins in the cytoplasmic pre-assembly of dynein arms. The model corresponds to the (dynein light chain) DLC-like domain of TCTEX1D1.


Pssm-ID: 412006  Cd Length: 104  Bit Score: 97.36  E-value: 3.56e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853  41 FRPSVVKDCIHTVLKEELASAEYSPDEMPQLTKRLSEMIKDKLKELGYDRYKMVVQVVIGEQRGEGVFMAARCFWDADTD 120
Cdd:cd21458   1 FPVASVKNILKDVLESYLQEERYEPELCRQMTKTISEVIKARVKDLMLPRYKIIVLVHIGQLNDQGLRVGSRCLWDPAND 80
                        90       100
                ....*....|....*....|...
gi 21426853 121 NYTHDVFMNDSLFCVVAAFGCFY 143
Cdd:cd21458  81 TFSSYEFRNSSLFAVATVYGVYF 103
DLC-like_DYNLT1_DYNLT3 cd21455
dynein light chain (DLC)-like domain found in the dynein light chain Tctex-type 1 (DYNLT1) ...
44-141 4.68e-21

dynein light chain (DLC)-like domain found in the dynein light chain Tctex-type 1 (DYNLT1) family; The dynein light chain Tctex-type 1 (DYNLT1) family includes two isoforms, DYNLT1 and DYNLT3, which contribute to the differential regulation of dynein cargo binding. They are non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. The dynein complex contains either DYNLT1 or DYNLT3, but not both. The model corresponds to the dynein light chain (DLC)-like domain of DYNLT1 and DYNLT3.


Pssm-ID: 412003  Cd Length: 97  Bit Score: 81.47  E-value: 4.68e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853  44 SVVKDCIHTVLKEElasaEYSPDEMPQLTKRLSEMIKDKLKELGyDRYKMVVQVVIGEQRGEGVFMAARCFWDADTDNYT 123
Cdd:cd21455   5 SIVKEAIEAVLGDK----TYSHSKVNQWSNSIVEEILKRLAKLN-KPFKYIVTCVIMQKTGAGLHTASSCYWDPTTDGSV 79
                        90
                ....*....|....*...
gi 21426853 124 HDVFMNDSLFCVVAAFGC 141
Cdd:cd21455  80 TVRWENKTMYCIVTVFGL 97
DLC-like_DYNLT1 cd21462
dynein light chain (DLC)-like domain found in dynein light chain Tctex-type 1 (DYNLT1) and ...
46-140 2.10e-10

dynein light chain (DLC)-like domain found in dynein light chain Tctex-type 1 (DYNLT1) and similar proteins; Dynein light chain Tctex-type 1 (DYNLT1), also called TCTEL1, or TCTEX1, or protein CW-1, or T-complex testis-specific protein 1 homolog, is a non-catalytic accessory component of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. It plays a role in neuronal morphogenesis. It is involved in intracellular targeting of D-type retrovirus gag polyproteins to the cytoplasmic assembly site. The model corresponds to the dynein light chain (DLC)-like domain of DYNLT1.


Pssm-ID: 412010  Cd Length: 102  Bit Score: 54.00  E-value: 2.10e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853  46 VKDCIHTVLKEELASA----EYSPDEMPQLTKRLSEMIKDKLKELGyDRYKMVVQVVIGEQRGEGVFMAARCFWDADTDN 121
Cdd:cd21462   2 VVDEVSNIIKEAIESTiggnAYQHNKVNQWTSNVVEQCLNQLTKLG-KPFKYIVTCVIMQKNGAGLHTASSCFWDNSTDG 80
                        90
                ....*....|....*....
gi 21426853 122 YTHDVFMNDSLFCVVAAFG 140
Cdd:cd21462  81 SCTVRWENKTMYCIVSVFG 99
DLC-like_DYNLT3 cd21463
dynein light chain (DLC)-like domain found in dynein light chain Tctex-type 3 (DYNLT3) and ...
45-139 9.37e-09

dynein light chain (DLC)-like domain found in dynein light chain Tctex-type 3 (DYNLT3) and similar proteins; Dynein light chain Tctex-type 3 (DYNLT3), also called rp3, or protein 91/23, or T-complex-associated testis-expressed 1-like, is a non-catalytic accessory component of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. It has a potential role in chromosome congression in human mitosis and is required for chromosome alignment during mouse oocyte meiotic maturation. The DYNLT3 light chain directly links cytoplasmic dynein to a spindle checkpoint protein, Bub3. The model corresponds to the dynein light chain (DLC)-like domain of DYNLT3.


Pssm-ID: 412011  Cd Length: 97  Bit Score: 49.89  E-value: 9.37e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853  45 VVKDCIHTVLkeelASAEYSPDEMPQLTKRLSEMIKDKLKELGyDRYKMVVQVVIGEQRGEGVFMAARCFWDADTDNYTH 124
Cdd:cd21463   6 VVKECIEGIL----GGVDYNHNKINQWTAAIVEQSLTHLVKLG-KPFKYIVTCAVMQKSGAGLHTASSCFWDTTTDGSCT 80
                        90
                ....*....|....*
gi 21426853 125 DVFMNDSLFCVVAAF 139
Cdd:cd21463  81 VRWENRTMYCVVSVF 95
DLC-like_DYNLT1-like cd21448
dynein light chain (DLC)-like domain found in the dynein light chain Tctex-type 1 (DYNLT1) ...
58-140 8.95e-06

dynein light chain (DLC)-like domain found in the dynein light chain Tctex-type 1 (DYNLT1) subfamily and similar proteins; The dynein light chain Tctex-type 1 (DYNLT1) subfamily includes two isoforms, DYNLT1 and DYNLT3, which contribute to the differential regulation of dynein cargo binding. They are non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. The dynein complex contains either DYNLT1 or DYNLT3, but not both. The family also includes Schizosaccharomyces pombe dynein light chain Tctex-type (SpDlc1), Saccharomyces cerevisiae topoisomerase I damage affected protein 2 (TDA2) and similar proteins. SpDlc1 belongs to the 14-kDa Tctex-1 dynein light chain family. It acts as a non-catalytic accessory component of a dynein complex. It is required for regular oscillatory nuclear movement and efficient recombination during meiotic prophase in fission yeast. TDA2 is a novel protein of the endocytic machinery necessary for normal internalization of native cargo in yeast. It works independently of the dynein motor complex and microtubules.


Pssm-ID: 411996  Cd Length: 98  Bit Score: 41.66  E-value: 8.95e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21426853  58 LASAEYSPDEMPQLTKRLSEMIKDKLKELGYDRYKMVVQVVIGEQRGEGVFMAARCFWDADTD---NYTHDvfmNDSLFC 134
Cdd:cd21448  15 LDDNEYDHAKTESWSNLIIKLVLSELEKLSKSPFKYIANCTILSINNFGLHTATGAFWDSKKDgsfTYKWE---NKNMCQ 91

                ....*.
gi 21426853 135 VVAAFG 140
Cdd:cd21448  92 CITILW 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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