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Conserved domains on  [gi|13375785|ref|NP_078868|]
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polyprenol reductase isoform 1 [Homo sapiens]

Protein Classification

phosphatidylethanolamine N-methyltransferase family domain-containing protein( domain architecture ID 229533)

phosphatidylethanolamine N-methyltransferase (PEMT) family domain-containing protein similar to Homo sapiens PEMT, which catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ICMT super family cl21511
Isoprenylcysteine carboxyl methyltransferase (ICMT) family; The isoprenylcysteine ...
69-318 1.40e-43

Isoprenylcysteine carboxyl methyltransferase (ICMT) family; The isoprenylcysteine o-methyltransferase (EC:2.1.1.100) family carry out carboxyl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology.


The actual alignment was detected with superfamily member PLN03164:

Pssm-ID: 473892 [Multi-domain]  Cd Length: 323  Bit Score: 151.89  E-value: 1.40e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13375785   69 FDVPKRYFSHFYIISVLWNGFLLWCLTQSLFLGAPFPSwlHGLLRILGAAQFQGG-----------------ELALSAFL 131
Cdd:PLN03164  39 FTVPQRFFSHFYVVGVVWTTLLLAATWLYAYKMAPLSS--EEFQYSDIASQLAGGshifsfhksrstpvehrYRVWRSVF 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13375785  132 VLVFLWLHSLRRLFECLYVSVFS-NVMIHVVQYCFGLVYYVLVGLTVL---------------SQVPMDGRNAYITGK-- 193
Cdd:PLN03164 117 LLLLMEIHVLRRLYESLYVFKYSpSARMHILGYLTGLFFYVAAPLSLCcncapevakfvgnqvAEFIVKGKSAMSAIEfd 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13375785  194 -----NLLMQARWFHILGMMMFIWSSAHQYKCHVILGNLRKNKAGVVihcNHRIPFGDWFEYVSSPNYLAELMIYVSMAV 268
Cdd:PLN03164 197 wwdfvSPLMKLGWFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQAD---EYVIPYGDWFEMVSCPHYLAEIVIYAGLLI 273
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 13375785  269 TFGFHNLTWWLVVTNVFFNQALSAFLSHQFYKSKFVSYPKHRKAFLPFLF 318
Cdd:PLN03164 274 ASGGTDLTIWLLFGFVVANLTFAAAETHRWYLQKFENYPRNRYAIIPFVY 323
 
Name Accession Description Interval E-value
PLN03164 PLN03164
3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
69-318 1.40e-43

3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional


Pssm-ID: 215610 [Multi-domain]  Cd Length: 323  Bit Score: 151.89  E-value: 1.40e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13375785   69 FDVPKRYFSHFYIISVLWNGFLLWCLTQSLFLGAPFPSwlHGLLRILGAAQFQGG-----------------ELALSAFL 131
Cdd:PLN03164  39 FTVPQRFFSHFYVVGVVWTTLLLAATWLYAYKMAPLSS--EEFQYSDIASQLAGGshifsfhksrstpvehrYRVWRSVF 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13375785  132 VLVFLWLHSLRRLFECLYVSVFS-NVMIHVVQYCFGLVYYVLVGLTVL---------------SQVPMDGRNAYITGK-- 193
Cdd:PLN03164 117 LLLLMEIHVLRRLYESLYVFKYSpSARMHILGYLTGLFFYVAAPLSLCcncapevakfvgnqvAEFIVKGKSAMSAIEfd 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13375785  194 -----NLLMQARWFHILGMMMFIWSSAHQYKCHVILGNLRKNKAGVVihcNHRIPFGDWFEYVSSPNYLAELMIYVSMAV 268
Cdd:PLN03164 197 wwdfvSPLMKLGWFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQAD---EYVIPYGDWFEMVSCPHYLAEIVIYAGLLI 273
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 13375785  269 TFGFHNLTWWLVVTNVFFNQALSAFLSHQFYKSKFVSYPKHRKAFLPFLF 318
Cdd:PLN03164 274 ASGGTDLTIWLLFGFVVANLTFAAAETHRWYLQKFENYPRNRYAIIPFVY 323
Steroid_dh pfam02544
3-oxo-5-alpha-steroid 4-dehydrogenase; This family consists of 3-oxo-5-alpha-steroid ...
201-318 2.63e-17

3-oxo-5-alpha-steroid 4-dehydrogenase; This family consists of 3-oxo-5-alpha-steroid 4-dehydrogenases, EC:1.3.99.5 Also known as Steroid 5-alpha-reductase, the reaction catalyzed by this enzyme is: 3-oxo-5-alpha-steroid + acceptor <=> 3-oxo-delta(4)-steroid + reduced acceptor. The Steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during fetal development. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related enzyme is also found in plants is DET2, a steroid reductase from Arabidopsis. Mutations in this enzyme cause defects in light-regulated development.


Pssm-ID: 460585 [Multi-domain]  Cd Length: 150  Bit Score: 77.45  E-value: 2.63e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13375785   201 WFHILGMMMFIWSSAHQYKCHVILGNLRKNKAGvvihcNHRIPFGDWFEYVSSPNYLAELMIYVSMAvtFGFHNLTWWLV 280
Cdd:pfam02544  40 PRFLIGIGLFVTGMLINIKSDIILRTLRKPGNT-----GYKIPRGGLFELVSCPNYFGEIMEWIGYA--LATWSLPALAF 112
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 13375785   281 VTNVFFNQALSAFLSHQFYKSKFVSYPKHRKAFLPFLF 318
Cdd:pfam02544 113 AFFTVCNLTPRAKAHHKWYLKKFEKYPKSRKALIPFVF 150
 
Name Accession Description Interval E-value
PLN03164 PLN03164
3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
69-318 1.40e-43

3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional


Pssm-ID: 215610 [Multi-domain]  Cd Length: 323  Bit Score: 151.89  E-value: 1.40e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13375785   69 FDVPKRYFSHFYIISVLWNGFLLWCLTQSLFLGAPFPSwlHGLLRILGAAQFQGG-----------------ELALSAFL 131
Cdd:PLN03164  39 FTVPQRFFSHFYVVGVVWTTLLLAATWLYAYKMAPLSS--EEFQYSDIASQLAGGshifsfhksrstpvehrYRVWRSVF 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13375785  132 VLVFLWLHSLRRLFECLYVSVFS-NVMIHVVQYCFGLVYYVLVGLTVL---------------SQVPMDGRNAYITGK-- 193
Cdd:PLN03164 117 LLLLMEIHVLRRLYESLYVFKYSpSARMHILGYLTGLFFYVAAPLSLCcncapevakfvgnqvAEFIVKGKSAMSAIEfd 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13375785  194 -----NLLMQARWFHILGMMMFIWSSAHQYKCHVILGNLRKNKAGVVihcNHRIPFGDWFEYVSSPNYLAELMIYVSMAV 268
Cdd:PLN03164 197 wwdfvSPLMKLGWFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQAD---EYVIPYGDWFEMVSCPHYLAEIVIYAGLLI 273
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 13375785  269 TFGFHNLTWWLVVTNVFFNQALSAFLSHQFYKSKFVSYPKHRKAFLPFLF 318
Cdd:PLN03164 274 ASGGTDLTIWLLFGFVVANLTFAAAETHRWYLQKFENYPRNRYAIIPFVY 323
Steroid_dh pfam02544
3-oxo-5-alpha-steroid 4-dehydrogenase; This family consists of 3-oxo-5-alpha-steroid ...
201-318 2.63e-17

3-oxo-5-alpha-steroid 4-dehydrogenase; This family consists of 3-oxo-5-alpha-steroid 4-dehydrogenases, EC:1.3.99.5 Also known as Steroid 5-alpha-reductase, the reaction catalyzed by this enzyme is: 3-oxo-5-alpha-steroid + acceptor <=> 3-oxo-delta(4)-steroid + reduced acceptor. The Steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during fetal development. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related enzyme is also found in plants is DET2, a steroid reductase from Arabidopsis. Mutations in this enzyme cause defects in light-regulated development.


Pssm-ID: 460585 [Multi-domain]  Cd Length: 150  Bit Score: 77.45  E-value: 2.63e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13375785   201 WFHILGMMMFIWSSAHQYKCHVILGNLRKNKAGvvihcNHRIPFGDWFEYVSSPNYLAELMIYVSMAvtFGFHNLTWWLV 280
Cdd:pfam02544  40 PRFLIGIGLFVTGMLINIKSDIILRTLRKPGNT-----GYKIPRGGLFELVSCPNYFGEIMEWIGYA--LATWSLPALAF 112
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 13375785   281 VTNVFFNQALSAFLSHQFYKSKFVSYPKHRKAFLPFLF 318
Cdd:pfam02544 113 AFFTVCNLTPRAKAHHKWYLKKFEKYPKSRKALIPFVF 150
PLN02392 PLN02392
probable steroid reductase DET2
201-318 8.06e-08

probable steroid reductase DET2


Pssm-ID: 178015  Cd Length: 260  Bit Score: 52.51  E-value: 8.06e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13375785  201 WFHILGMMMFIWSSAHQYKCHVILGNLRKNKAGvvihcnHRIPFGDWFEYVSSPNYLAELMIYVSMAVtfgfhnLTWWLV 280
Cdd:PLN02392 150 WRFFGGLVVFLWGMRINVWSDRVLVGLKREGGG------YKVPRGGWFELVSCPNYFGEIVEWLGWAV------MTWSWA 217
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 13375785  281 VTNVFF----NQALSAFLSHQFYKSKF-VSYPKHRKAFLPFLF 318
Cdd:PLN02392 218 GFGFFLytcsNLVPRACANHKWYLEKFgEDYPKGRKAVIPFLY 260
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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