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Conserved domains on  [gi|32261332|ref|NP_066938|]
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seizure 6-like protein isoform 1 precursor [Homo sapiens]

Protein Classification

CUB and CCP domain-containing protein( domain architecture ID 12870549)

CUB and CCP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 628-736 1.40e-25

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 102.11  E-value: 1.40e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332  628 CGGELSA-VAGVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNS 701
Cdd:cd00041    1 CGGTLTAsTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSpncsyDYLEIYDGPSTSSPLLGRFCGST 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 32261332  702 GPQKLYSSTPDLTIQFHSDPAglifGKGQGFIMNY 736
Cdd:cd00041   81 LPPPIISSGNSLTVRFRSDSS----VTGRGFKATY 111
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 452-561 9.07e-21

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 88.62  E-value: 9.07e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332  452 CGGAVHNATIGRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLLH-----DKDRMTVHSGQTNKSALLyDSLQTE 526
Cdd:cd00041    1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspncSYDYLEIYDGPSTSSPLL-GRFCGS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 32261332  527 SVPFEgLLSEGNTIRIEFTSDQARAASTFNIRFEA 561
Cdd:cd00041   80 TLPPP-IISSGNSLTVRFRSDSSVTGRGFKATYSA 113
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 745-930 3.57e-14

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 73.92  E-value: 3.57e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   745 CSDLPEIQNGWKTTSHTELvrGARITYQCDPGYDIVGSDTLTCQW----DLSWSSDPPFCEKIMyCTDPGEVDHSTRLIS 820
Cdd:PHA02927   86 CPSPRDIDNGQLDIGGVDF--GSSITYSCNSGYQLIGESKSYCELgstgSMVWNPEAPICESVK-CQSPPSISNGRHNGY 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   821 DPVLLVGTTIQYTCNPGFVLEGSSLLTCYSRETGTPiwtsrlPHCvseESLACDNPGLpENGY-QILYKRLYLPGESLTF 899
Cdd:PHA02927  163 EDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP------PTC---QIVKCPHPTI-SNGYlSSGFKRSYSYNDNVDF 232

                         170       180       190
                  ....*....|....*....|....*....|.
gi 32261332   900 MCYEGFELMGEVTIRCILGQPshWNGPLPVC 930
Cdd:PHA02927  233 KCKYGYKLSGSSSSTCSPGNT--WQPELPKC 261
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 281-388 1.41e-09

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 56.65  E-value: 1.41e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332  281 CSVSFSNP-EGYIDSSDYPLLPLNNfLECTYNVTVYTGYGVELQVKSVNLSDGEL-----LSIRGVDGPTLTVLANQTLL 354
Cdd:cd00041    1 CGGTLTAStSGTISSPNYPNNYPNN-LNCVWTIEAPPGYRIRLTFEDFDLESSPNcsydyLEIYDGPSTSSPLLGRFCGS 79

                         90       100       110
                 ....*....|....*....|....*....|....
gi 32261332  355 VEGQVIRSPTNTISVYFRTFQDDGLGTFQLHYQA 388
Cdd:cd00041   80 TLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
Sushi pfam00084
Sushi repeat (SCR repeat);
567-624 5.44e-09

Sushi repeat (SCR repeat);


:

Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 52.89  E-value: 5.44e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 32261332    567 CYEP-YIQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 624
Cdd:pfam00084    1 CPPPpDIPNGKVSATKNEYNYGASVSYECDPGYRL-VGSPTITCQE--DGTWSPPFPEC 56
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 6-239 1.72e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332     6 PPAAGLRGISLFLALLLGSPAAALERDALPEGDASPLGPYLlPSGAPERGSP-GKEHPEERVVTAPPSSSqSAEVLGELV 84
Cdd:PHA03247 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT-TAGPPAPAPPaAPAAGPPRRLTRPAVAS-LSESRESLP 2799

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332    85 LDGTAPSAHHDIPALSPLLPEEARPKHALPPKkklPSLKQVNSARkqlrPKATSAATVQRAGSqpASQGLDLLSSSTEKP 164
Cdd:PHA03247 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPP---TSAQPTAPPP----PPGPPPPSLPLGGS--VAPGGDVRRRPPSRS 2870

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 32261332   165 GppgdpdpiVASEEASEVPLWLDRKESAVPTTPAPLQISPFTSQPYVAHTLPQRPEPGEPGPDMAQEAPQEDTSP 239
Cdd:PHA03247 2871 P--------AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 393-448 2.42e-06

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


:

Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.60  E-value: 2.42e-06
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 32261332     393 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 448
Cdd:smart00032    1 CPPPPDIENGTVTSSsgTYSYGDTVTYSCDPGYTLIGSSTITCLENGT--WSPPPPTC 56
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 628-736 1.40e-25

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 102.11  E-value: 1.40e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332  628 CGGELSA-VAGVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNS 701
Cdd:cd00041    1 CGGTLTAsTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSpncsyDYLEIYDGPSTSSPLLGRFCGST 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 32261332  702 GPQKLYSSTPDLTIQFHSDPAglifGKGQGFIMNY 736
Cdd:cd00041   81 LPPPIISSGNSLTVRFRSDSS----VTGRGFKATY 111
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 452-561 9.07e-21

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 88.62  E-value: 9.07e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332  452 CGGAVHNATIGRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLLH-----DKDRMTVHSGQTNKSALLyDSLQTE 526
Cdd:cd00041    1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspncSYDYLEIYDGPSTSSPLL-GRFCGS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 32261332  527 SVPFEgLLSEGNTIRIEFTSDQARAASTFNIRFEA 561
Cdd:cd00041   80 TLPPP-IISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 637-736 1.63e-18

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 81.67  E-value: 1.63e-18
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332     637 GVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNSGPQKLYSS-T 710
Cdd:smart00042    1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSdnceyDYVEIYDGPSASSPLLGRFCGSEAPPPVISSsS 80

                            90       100
                    ....*....|....*....|....*.
gi 32261332     711 PDLTIQFHSDPAglifGKGQGFIMNY 736
Cdd:smart00042   81 NSLTLTFVSDSS----VQKRGFSARY 102
CUB pfam00431
CUB domain;
628-723 2.50e-17

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 78.49  E-value: 2.50e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332    628 CGGELSAVAGVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNSG 702
Cdd:pfam00431    1 CGGVLTDSSGSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDHdecgyDYVEIRDGPSASSPLLGRFCGSGI 80

                           90       100
                   ....*....|....*....|.
gi 32261332    703 PQKLYSSTPDLTIQFHSDPAG 723
Cdd:pfam00431   81 PEDIVSSSNQMTIKFVSDASV 101
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 745-930 3.57e-14

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 73.92  E-value: 3.57e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   745 CSDLPEIQNGWKTTSHTELvrGARITYQCDPGYDIVGSDTLTCQW----DLSWSSDPPFCEKIMyCTDPGEVDHSTRLIS 820
Cdd:PHA02927   86 CPSPRDIDNGQLDIGGVDF--GSSITYSCNSGYQLIGESKSYCELgstgSMVWNPEAPICESVK-CQSPPSISNGRHNGY 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   821 DPVLLVGTTIQYTCNPGFVLEGSSLLTCYSRETGTPiwtsrlPHCvseESLACDNPGLpENGY-QILYKRLYLPGESLTF 899
Cdd:PHA02927  163 EDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP------PTC---QIVKCPHPTI-SNGYlSSGFKRSYSYNDNVDF 232

                         170       180       190
                  ....*....|....*....|....*....|.
gi 32261332   900 MCYEGFELMGEVTIRCILGQPshWNGPLPVC 930
Cdd:PHA02927  233 KCKYGYKLSGSSSSTCSPGNT--WQPELPKC 261
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 462-559 4.70e-14

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 68.96  E-value: 4.70e-14
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332     462 GRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLL--HD---KDRMTVHSGQTNKSALL--YDSLQTESVPFEgll 534
Cdd:smart00042    1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLesSDnceYDYVEIYDGPSASSPLLgrFCGSEAPPPVIS--- 77

                            90       100
                    ....*....|....*....|....*
gi 32261332     535 SEGNTIRIEFTSDQARAASTFNIRF 559
Cdd:smart00042   78 SSSNSLTLTFVSDSSVQKRGFSARY 102
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 745-801 1.69e-13

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 65.95  E-value: 1.69e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 32261332  745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCE 801
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 745-800 2.11e-13

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 65.63  E-value: 2.11e-13
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 32261332     745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 800
Cdd:smart00032    1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
745-800 2.29e-12

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 62.52  E-value: 2.29e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 32261332    745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 800
Cdd:pfam00084    1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
CUB pfam00431
CUB domain;
452-559 4.73e-12

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 63.47  E-value: 4.73e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332    452 CGGAVHNATiGRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLLHD-----KDRMTVHSGQTNKSALL--Ydslq 524
Cdd:pfam00431    1 CGGVLTDSS-GSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDhdecgYDYVEIRDGPSASSPLLgrF---- 75

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 32261332    525 TESVPFEGLLSEGNTIRIEFTSDQARAASTFNIRF 559
Cdd:pfam00431   76 CGSGIPEDIVSSSNQMTIKFVSDASVQKRGFKATY 110
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 281-388 1.41e-09

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 56.65  E-value: 1.41e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332  281 CSVSFSNP-EGYIDSSDYPLLPLNNfLECTYNVTVYTGYGVELQVKSVNLSDGEL-----LSIRGVDGPTLTVLANQTLL 354
Cdd:cd00041    1 CGGTLTAStSGTISSPNYPNNYPNN-LNCVWTIEAPPGYRIRLTFEDFDLESSPNcsydyLEIYDGPSTSSPLLGRFCGS 79

                         90       100       110
                 ....*....|....*....|....*....|....
gi 32261332  355 VEGQVIRSPTNTISVYFRTFQDDGLGTFQLHYQA 388
Cdd:cd00041   80 TLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
Sushi pfam00084
Sushi repeat (SCR repeat);
567-624 5.44e-09

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 52.89  E-value: 5.44e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 32261332    567 CYEP-YIQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 624
Cdd:pfam00084    1 CPPPpDIPNGKVSATKNEYNYGASVSYECDPGYRL-VGSPTITCQE--DGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 570-624 1.38e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 51.76  E-value: 1.38e-08
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*
gi 32261332     570 PYIQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 624
Cdd:smart00032    5 PDIENGTVTSSSGTYSYGDTVTYSCDPGYTL-IGSSTITCLE--NGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 567-625 4.10e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 50.54  E-value: 4.10e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 32261332  567 CYEPY-IQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECI-NVRdpyWNDTEPLCR 625
Cdd:cd00033    1 CPPPPvPENGTVTGSKGSYSYGSTVTYSCNEGYTL-VGSSTITCTeNGG---WSPPPPTCE 57
PHA03247 PHA03247
large tegument protein UL36; Provisional
 6-239 1.72e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332     6 PPAAGLRGISLFLALLLGSPAAALERDALPEGDASPLGPYLlPSGAPERGSP-GKEHPEERVVTAPPSSSqSAEVLGELV 84
Cdd:PHA03247 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT-TAGPPAPAPPaAPAAGPPRRLTRPAVAS-LSESRESLP 2799

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332    85 LDGTAPSAHHDIPALSPLLPEEARPKHALPPKkklPSLKQVNSARkqlrPKATSAATVQRAGSqpASQGLDLLSSSTEKP 164
Cdd:PHA03247 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPP---TSAQPTAPPP----PPGPPPPSLPLGGS--VAPGGDVRRRPPSRS 2870

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 32261332   165 GppgdpdpiVASEEASEVPLWLDRKESAVPTTPAPLQISPFTSQPYVAHTLPQRPEPGEPGPDMAQEAPQEDTSP 239
Cdd:PHA03247 2871 P--------AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 393-448 2.42e-06

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.60  E-value: 2.42e-06
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 32261332     393 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 448
Cdd:smart00032    1 CPPPPDIENGTVTSSsgTYSYGDTVTYSCDPGYTLIGSSTITCLENGT--WSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 393-448 3.69e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 45.15  E-value: 3.69e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 32261332  393 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCInaSKPHWSSQEPIC 448
Cdd:cd00033    1 CPPPPVPENGTVTGSkgSYSYGSTVTYSCNEGYTLVGSSTITCT--ENGGWSPPPPTC 56
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 290-386 4.36e-05

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 43.53  E-value: 4.36e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332     290 GYIDSSDYPLLPLNNfLECTYNVTVYTGYGVELQVKSVNLSDGEL-----LSIRgvDGPTLTVLANQTL---LVEGQVIR 361
Cdd:smart00042    1 GTITSPNYPQSYPNN-LDCVWTIRAPPGYRIELQFTDFDLESSDNceydyVEIY--DGPSASSPLLGRFcgsEAPPPVIS 77

                            90       100
                    ....*....|....*....|....*
gi 32261332     362 SPTNTISVYFRTFQDDGLGTFQLHY 386
Cdd:smart00042   78 SSSNSLTLTFVSDSSVQKRGFSARY 102
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 1-234 5.14e-04

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 43.90  E-value: 5.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332    1 MPAARPPAAGLRGISLFLALLLGSPAA---ALERDALPEGDASPLGPYLL-----PSGAPERGSPGKEHPEERVVTAPPS 72
Cdd:COG5180  111 PAAKTPELAAGALPAPAAAAALPKAKVtreATSASAGVALAAALLQRSDPilakdPDGDSASTLPPPAEKLDKVLTEPRD 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   73 SSQSAEVLGELVLDGTAPSAHHDIPALSPLlPEEARPKHALPPKKKLPSL------KQVNSARKQLRPKATSAATVQRAG 146
Cdd:COG5180  191 ALKDSPEKLDRPKVEVKDEAQEEPPDLTGG-ADHPRPEAASSPKVDPPSTsearsrPATVDAQPEMRPPADAKERRRAAI 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332  147 SQPASQGLDLL----------SSSTEKPGPPGDPDPIVASEEASEVPLWLdRKESAVPTTPAPLQIS------PFT---- 206
Cdd:COG5180  270 GDTPAAEPPGLpvleagsepqSDAPEAETARPIDVKGVASAPPATRPVRP-PGGARDPGTPRPGQPTerpagvPEAasda 348

                        250       260
                 ....*....|....*....|....*...
gi 32261332  207 SQPYVAHTLPQRPEPGEPGPdmaQEAPQ 234
Cdd:COG5180  349 GQPPSAYPPAEEAVPGKPLE---QGAPR 373
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 628-736 1.40e-25

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 102.11  E-value: 1.40e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332  628 CGGELSA-VAGVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNS 701
Cdd:cd00041    1 CGGTLTAsTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSpncsyDYLEIYDGPSTSSPLLGRFCGST 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 32261332  702 GPQKLYSSTPDLTIQFHSDPAglifGKGQGFIMNY 736
Cdd:cd00041   81 LPPPIISSGNSLTVRFRSDSS----VTGRGFKATY 111
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 452-561 9.07e-21

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 88.62  E-value: 9.07e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332  452 CGGAVHNATIGRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLLH-----DKDRMTVHSGQTNKSALLyDSLQTE 526
Cdd:cd00041    1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspncSYDYLEIYDGPSTSSPLL-GRFCGS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 32261332  527 SVPFEgLLSEGNTIRIEFTSDQARAASTFNIRFEA 561
Cdd:cd00041   80 TLPPP-IISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 637-736 1.63e-18

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 81.67  E-value: 1.63e-18
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332     637 GVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNSGPQKLYSS-T 710
Cdd:smart00042    1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSdnceyDYVEIYDGPSASSPLLGRFCGSEAPPPVISSsS 80

                            90       100
                    ....*....|....*....|....*.
gi 32261332     711 PDLTIQFHSDPAglifGKGQGFIMNY 736
Cdd:smart00042   81 NSLTLTFVSDSS----VQKRGFSARY 102
CUB pfam00431
CUB domain;
628-723 2.50e-17

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 78.49  E-value: 2.50e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332    628 CGGELSAVAGVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNSG 702
Cdd:pfam00431    1 CGGVLTDSSGSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDHdecgyDYVEIRDGPSASSPLLGRFCGSGI 80

                           90       100
                   ....*....|....*....|.
gi 32261332    703 PQKLYSSTPDLTIQFHSDPAG 723
Cdd:pfam00431   81 PEDIVSSSNQMTIKFVSDASV 101
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 745-930 3.57e-14

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 73.92  E-value: 3.57e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   745 CSDLPEIQNGWKTTSHTELvrGARITYQCDPGYDIVGSDTLTCQW----DLSWSSDPPFCEKIMyCTDPGEVDHSTRLIS 820
Cdd:PHA02927   86 CPSPRDIDNGQLDIGGVDF--GSSITYSCNSGYQLIGESKSYCELgstgSMVWNPEAPICESVK-CQSPPSISNGRHNGY 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   821 DPVLLVGTTIQYTCNPGFVLEGSSLLTCYSRETGTPiwtsrlPHCvseESLACDNPGLpENGY-QILYKRLYLPGESLTF 899
Cdd:PHA02927  163 EDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP------PTC---QIVKCPHPTI-SNGYlSSGFKRSYSYNDNVDF 232

                         170       180       190
                  ....*....|....*....|....*....|.
gi 32261332   900 MCYEGFELMGEVTIRCILGQPshWNGPLPVC 930
Cdd:PHA02927  233 KCKYGYKLSGSSSSTCSPGNT--WQPELPKC 261
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 462-559 4.70e-14

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 68.96  E-value: 4.70e-14
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332     462 GRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLL--HD---KDRMTVHSGQTNKSALL--YDSLQTESVPFEgll 534
Cdd:smart00042    1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLesSDnceYDYVEIYDGPSASSPLLgrFCGSEAPPPVIS--- 77

                            90       100
                    ....*....|....*....|....*
gi 32261332     535 SEGNTIRIEFTSDQARAASTFNIRF 559
Cdd:smart00042   78 SSSNSLTLTFVSDSSVQKRGFSARY 102
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 744-932 8.58e-14

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 72.76  E-value: 8.58e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   744 SCSDLP------EIQNGWKTTSHTELVRGARITYQCDPGY--DIVGSDTLTCQ---WDLswssdppFCEKIMY-CTDPGE 811
Cdd:PHA02927   19 SCCTIPsrpinmKFKNSVETDANANYNIGDTIEYLCLPGYrkQKMGPIYAKCTgtgWTL-------FNQCIKRrCPSPRD 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   812 VDHSTRLISDpvLLVGTTIQYTCNPGFVLEGSSLLTCYSRETGTPIWTSRLPHCvseESLACDNPGLPENGYQILYKRLY 891
Cdd:PHA02927   92 IDNGQLDIGG--VDFGSSITYSCNSGYQLIGESKSYCELGSTGSMVWNPEAPIC---ESVKCQSPPSISNGRHNGYEDFY 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 32261332   892 LPGESLTFMCYEGFELMGEVTIRCILGQpshWNGPlPVCKV 932
Cdd:PHA02927  167 TDGSVVTYSCNSGYSLIGNSGVLCSGGE---WSDP-PTCQI 203
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 745-801 1.69e-13

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 65.95  E-value: 1.69e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 32261332  745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCE 801
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 745-800 2.11e-13

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 65.63  E-value: 2.11e-13
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 32261332     745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 800
Cdd:smart00032    1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
745-800 2.29e-12

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 62.52  E-value: 2.29e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 32261332    745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 800
Cdd:pfam00084    1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
CUB pfam00431
CUB domain;
452-559 4.73e-12

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 63.47  E-value: 4.73e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332    452 CGGAVHNATiGRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLLHD-----KDRMTVHSGQTNKSALL--Ydslq 524
Cdd:pfam00431    1 CGGVLTDSS-GSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDhdecgYDYVEIRDGPSASSPLLgrF---- 75

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 32261332    525 TESVPFEGLLSEGNTIRIEFTSDQARAASTFNIRF 559
Cdd:pfam00431   76 CGSGIPEDIVSSSNQMTIKFVSDASVQKRGFKATY 110
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 873-931 1.14e-11

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 60.55  E-value: 1.14e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 32261332  873 CDNPGLPENGYQILYKRLYLPGESLTFMCYEGFELMGEVTIRCILGqpSHWNGPLPVCK 931
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTEN--GGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 873-930 9.67e-11

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 57.92  E-value: 9.67e-11
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 32261332     873 CDNPGLPENGYQILYKRLYLPGESLTFMCYEGFELMGEVTIRCILGqpSHWNGPLPVC 930
Cdd:smart00032    1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLEN--GTWSPPPPTC 56
PHA02639 PHA02639
EEV host range protein; Provisional
 736-934 1.67e-10

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 63.14  E-value: 1.67e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   736 YIEVSRNDSCSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLS---WSSDPPFCeKIMYCTDPGEV 812
Cdd:PHA02639   13 YVHGVKSIYCDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNnaiWSNKAPFC-MLKECNDPPSI 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   813 DHSTRLISDPVLLVGTTIQYTCNP----GFVLEGSSLLTCYSRETgtpiWTSRLPHCvseESLACDNPGLpENGY--QIL 886
Cdd:PHA02639   92 INGKIYNKREMYKVGDEIYYVCNEhkgvQYSLVGNEKITCIQDKS----WKPDPPIC---KMINCRFPAL-QNGYinGIP 163

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 32261332   887 YKRLYLPGESLTFMCYEGFELMGEVTIRCILGqpSHWNGPLPVCKVNQ 934
Cdd:PHA02639  164 SNKKFYYKTRVGFSCKSGFDLVGEKYSTCNIN--ATWFPSIPTCVRNK 209
PHA02639 PHA02639
EEV host range protein; Provisional
 745-871 1.39e-09

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 60.45  E-value: 1.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   745 CSDLPEIQNGwKTTSHTELVR-GARITYQCDP----GYDIVGSDTLTCQWDLSWSSDPPFCeKIMYCTDPG-EVDHSTRL 818
Cdd:PHA02639   85 CNDPPSIING-KIYNKREMYKvGDEIYYVCNEhkgvQYSLVGNEKITCIQDKSWKPDPPIC-KMINCRFPAlQNGYINGI 162

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 32261332   819 ISDPVLLVGTTIQYTCNPGFVLEGSSLLTCYSRETgtpiWTSRLPHCVSEESL 871
Cdd:PHA02639  163 PSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINAT----WFPSIPTCVRNKPI 211
PHA02817 PHA02817
EEV Host range protein; Provisional
 743-866 1.40e-09

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 59.57  E-value: 1.40e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   743 DSCSDLPEIQNGWKTTSHTELVRGARITYQCDPG-----YDIVGSDTLTCQWDLSWSSDPPFCEkIMYCTDPGEVDHSTR 817
Cdd:PHA02817   22 NKCCYPPSIKNGYIYNKKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICEKDGKWNKEFPVCK-IIRCRFPALQNGFVN 100

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 32261332   818 LISD-PVLLVGTTIQYTCNPGFVLEGSSLLTCYSRETgtpiWTSRLPHCV 866
Cdd:PHA02817  101 GIPDsKKFYYESEVSFSCKPGFVLIGTKYSVCGINSS----WIPKVPICS 146
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 281-388 1.41e-09

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 56.65  E-value: 1.41e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332  281 CSVSFSNP-EGYIDSSDYPLLPLNNfLECTYNVTVYTGYGVELQVKSVNLSDGEL-----LSIRGVDGPTLTVLANQTLL 354
Cdd:cd00041    1 CGGTLTAStSGTISSPNYPNNYPNN-LNCVWTIEAPPGYRIRLTFEDFDLESSPNcsydyLEIYDGPSTSSPLLGRFCGS 79

                         90       100       110
                 ....*....|....*....|....*....|....
gi 32261332  355 VEGQVIRSPTNTISVYFRTFQDDGLGTFQLHYQA 388
Cdd:cd00041   80 TLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 806-865 3.09e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 53.68  E-value: 3.09e-09
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332     806 CTDPGEVDHSTRLISDPVLLVGTTIQYTCNPGFVLEGSSLLTCysRETGTpiWTSRLPHC 865
Cdd:smart00032    1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITC--LENGT--WSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 806-866 3.18e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.62  E-value: 3.18e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 32261332  806 CTDPGEVDHSTRLISDPVLLVGTTIQYTCNPGFVLEGSSLLTCysreTGTPIWTSRLPHCV 866
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITC----TENGGWSPPPPTCE 57
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 745-866 3.67e-09

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 58.90  E-value: 3.67e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTC---QWdlswsSDPPFCEkIMYCTDPGevdhstrlISD 821
Cdd:PHA02927  148 CQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCsggEW-----SDPPTCQ-IVKCPHPT--------ISN 213

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 32261332   822 PVLLVG--------TTIQYTCNPGFVLEGSSLLTCYSRETgtpiWTSRLPHCV 866
Cdd:PHA02927  214 GYLSSGfkrsysynDNVDFKCKYGYKLSGSSSSTCSPGNT----WQPELPKCV 262
Sushi pfam00084
Sushi repeat (SCR repeat);
567-624 5.44e-09

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 52.89  E-value: 5.44e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 32261332    567 CYEP-YIQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 624
Cdd:pfam00084    1 CPPPpDIPNGKVSATKNEYNYGASVSYECDPGYRL-VGSPTITCQE--DGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 570-624 1.38e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 51.76  E-value: 1.38e-08
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*
gi 32261332     570 PYIQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 624
Cdd:smart00032    5 PDIENGTVTSSSGTYSYGDTVTYSCDPGYTL-IGSSTITCLE--NGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 567-625 4.10e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 50.54  E-value: 4.10e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 32261332  567 CYEPY-IQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECI-NVRdpyWNDTEPLCR 625
Cdd:cd00033    1 CPPPPvPENGTVTGSKGSYSYGSTVTYSCNEGYTL-VGSSTITCTeNGG---WSPPPPTCE 57
Sushi pfam00084
Sushi repeat (SCR repeat);
806-865 1.07e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 49.42  E-value: 1.07e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332    806 CTDPGEVDHSTRLISDPVLLVGTTIQYTCNPGFVLEGSSLLTCysRETGTpiWTSRLPHC 865
Cdd:pfam00084    1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITC--QEDGT--WSPPFPEC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
873-930 1.48e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 49.03  E-value: 1.48e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 32261332    873 CDNPGLPENGYQILYKRLYLPGESLTFMCYEGFELMGEVTIRCIL-GQpshWNGPLPVC 930
Cdd:pfam00084    1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEdGT---WSPPFPEC 56
PHA03247 PHA03247
large tegument protein UL36; Provisional
 6-239 1.72e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332     6 PPAAGLRGISLFLALLLGSPAAALERDALPEGDASPLGPYLlPSGAPERGSP-GKEHPEERVVTAPPSSSqSAEVLGELV 84
Cdd:PHA03247 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT-TAGPPAPAPPaAPAAGPPRRLTRPAVAS-LSESRESLP 2799

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332    85 LDGTAPSAHHDIPALSPLLPEEARPKHALPPKkklPSLKQVNSARkqlrPKATSAATVQRAGSqpASQGLDLLSSSTEKP 164
Cdd:PHA03247 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPP---TSAQPTAPPP----PPGPPPPSLPLGGS--VAPGGDVRRRPPSRS 2870

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 32261332   165 GppgdpdpiVASEEASEVPLWLDRKESAVPTTPAPLQISPFTSQPYVAHTLPQRPEPGEPGPDMAQEAPQEDTSP 239
Cdd:PHA03247 2871 P--------AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 393-448 2.42e-06

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.60  E-value: 2.42e-06
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 32261332     393 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 448
Cdd:smart00032    1 CPPPPDIENGTVTSSsgTYSYGDTVTYSCDPGYTLIGSSTITCLENGT--WSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 393-448 3.69e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 45.15  E-value: 3.69e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 32261332  393 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCInaSKPHWSSQEPIC 448
Cdd:cd00033    1 CPPPPVPENGTVTGSkgSYSYGSTVTYSCNEGYTLVGSSTITCT--ENGGWSPPPPTC 56
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 766-866 4.60e-06

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 49.70  E-value: 4.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   766 GARITYQCDPGYDIVGSDTLTCQWDlSWSSDPPFCEKimyCTDPgevDHSTRLISDPVLLVGTTIQYTCNPGFVLEGSSL 845
Cdd:PHA02954  150 GEHITINCDVGYEVIGASYISCTAN-SWNVIPSCQQK---CDIP---SLSNGLISGSTFSIGGVIHLSCKSGFTLTGSPS 222

                          90       100
                  ....*....|....*....|.
gi 32261332   846 LTCYSREtgtpiWTSRLPHCV 866
Cdd:PHA02954  223 STCIDGK-----WNPVLPICV 238
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 290-386 4.36e-05

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 43.53  E-value: 4.36e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332     290 GYIDSSDYPLLPLNNfLECTYNVTVYTGYGVELQVKSVNLSDGEL-----LSIRgvDGPTLTVLANQTL---LVEGQVIR 361
Cdd:smart00042    1 GTITSPNYPQSYPNN-LDCVWTIRAPPGYRIELQFTDFDLESSDNceydyVEIY--DGPSASSPLLGRFcgsEAPPPVIS 77

                            90       100
                    ....*....|....*....|....*
gi 32261332     362 SPTNTISVYFRTFQDDGLGTFQLHY 386
Cdd:smart00042   78 SSSNSLTLTFVSDSSVQKRGFSARY 102
PHA02831 PHA02831
EEV host range protein; Provisional
 768-930 1.83e-04

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 44.60  E-value: 1.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   768 RITYQCDPGYDIVgsdTLTCQwDLSWSSDPpFCEKIMYCTDP-----GEVDHSTRLISdpvllVGTTIQYTCNPG----F 838
Cdd:PHA02831   45 NLEYKCNNNFDKV---FVTCN-NGSWSTKN-MCIGKRNCKDPvtilnGYIKNKKDQYS-----FGDSVTYACKVNklekY 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   839 VLEGSSLLTCYSREtgtpiWTSRLPHCvseESLACDNPGLpENGYQILYKRLYLPGESLTFMCYEGFELMGEVTIRCilG 918
Cdd:PHA02831  115 SIVGNETVKCINKQ-----WVPKYPVC---KLIRCKYPAL-QNGFLNVFEKKFYYGDIVNFKCKKGFILLGSSVSTC--D 183

                         170
                  ....*....|..
gi 32261332   919 QPSHWNGPLPVC 930
Cdd:PHA02831  184 INSIWYPGIPKC 195
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 1-234 5.14e-04

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 43.90  E-value: 5.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332    1 MPAARPPAAGLRGISLFLALLLGSPAA---ALERDALPEGDASPLGPYLL-----PSGAPERGSPGKEHPEERVVTAPPS 72
Cdd:COG5180  111 PAAKTPELAAGALPAPAAAAALPKAKVtreATSASAGVALAAALLQRSDPilakdPDGDSASTLPPPAEKLDKVLTEPRD 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   73 SSQSAEVLGELVLDGTAPSAHHDIPALSPLlPEEARPKHALPPKKKLPSL------KQVNSARKQLRPKATSAATVQRAG 146
Cdd:COG5180  191 ALKDSPEKLDRPKVEVKDEAQEEPPDLTGG-ADHPRPEAASSPKVDPPSTsearsrPATVDAQPEMRPPADAKERRRAAI 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332  147 SQPASQGLDLL----------SSSTEKPGPPGDPDPIVASEEASEVPLWLdRKESAVPTTPAPLQIS------PFT---- 206
Cdd:COG5180  270 GDTPAAEPPGLpvleagsepqSDAPEAETARPIDVKGVASAPPATRPVRP-PGGARDPGTPRPGQPTerpagvPEAasda 348

                        250       260
                 ....*....|....*....|....*...
gi 32261332  207 SQPYVAHTLPQRPEPGEPGPdmaQEAPQ 234
Cdd:COG5180  349 GQPPSAYPPAEEAVPGKPLE---QGAPR 373
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 744-935 1.26e-03

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 42.00  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   744 SCSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLtCQWDlSWSSDPPfCEKImyCTDPgevDHSTRLISDPV 823
Cdd:PHA02954   19 STCTVPTMNNAKLTSTETSFNDKQKVTFTCDSGYYSLDPNAV-CETD-KWKYENP-CKKM--CTVS---DYVSELYDKPL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   824 LLVGTTIQYTCNpgfvlEGSSLLTCySRETGTPIWTSRLPhCVSEEslaCDNPGLPENGYQILyKRLYLPGESLTFMCYE 903
Cdd:PHA02954   91 YEVNSTITLICK-----DETKYFRC-EEKNGNTSWNDTVT-CPNAE---CQPLQLEHGSCQPV-KEKYSFGEHITINCDV 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 32261332   904 GFELMGEVTIRCilgQPSHWNgPLPVCKVNQD 935
Cdd:PHA02954  160 GYEVIGASYISC---TANSWN-VIPSCQQKCD 187
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
51-239 2.40e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.76  E-value: 2.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332    51 APERGSPGKEHPEERVVTAPPSSSQSAEVlgelvldGTAPSAHHDIPALSPLLPEEARPKHALPPKKKLPSLKQVNSARK 130
Cdd:PRK07003  361 AVTGGGAPGGGVPARVAGAVPAPGARAAA-------AVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPP 433

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   131 QLRPKATSAATVQRAGSQPASQGLDLLSSSTEKPGPPGDPDPIVASEEASEVPLWLDRKES-AVPTTPAPLQISPFTSQP 209
Cdd:PRK07003  434 ATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPrAAAPSAATPAAVPDARAP 513

                         170       180       190
                  ....*....|....*....|....*....|
gi 32261332   210 YVAHTLPQRPEPGEPGPDMAQEAPQEDTSP 239
Cdd:PRK07003  514 AAASREDAPAAAAPPAPEARPPTPAAAAPA 543
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2-242 5.33e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 5.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332     2 PAARPPAAG--LRGISLFLALLLGSPAAALERDALPEGDASP------LGPYLLPSGAPERGSP-------------GKE 60
Cdd:PHA03247 2622 HAPDPPPPSpsPAANEPDPHPPPTVPPPERPRDDPAPGRVSRprrarrLGRAAQASSPPQRPRRraarptvgsltslADP 2701

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332    61 HPEERVVTAPPSSSQSAEVLGELVLDGTAPSAHHDIPALSPLLPEEArpkhALPPKKKLPSLKQVNSARKQLRPKATSAA 140
Cdd:PHA03247 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGP----ATPGGPARPARPPTTAGPPAPAPPAAPAA 2777

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32261332   141 TVQRAGSQPASQGLDLLSSSTEKPGPPGDPDPIVASEEASEVPLWLDRKESAVPTTPAPlqISPFTSQPYVAHTLP---- 216
Cdd:PHA03247 2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP--TAPPPPPGPPPPSLPlggs 2855

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 32261332   217 --------QRPEPGEPGPD-----------MAQEAPQEDTSPMAL 242
Cdd:PHA03247 2856 vapggdvrRRPPSRSPAAKpaaparppvrrLARPAVSRSTESFAL 2900
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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