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Conserved domains on  [gi|7305293|ref|NP_038633|]
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mucin-1 precursor [Mus musculus]

Protein Classification

Herpes_BLLF1 and SEA domain-containing protein( domain architecture ID 13558016)

Herpes_BLLF1 and SEA domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SEA smart00200
Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating ...
 412-528 7.07e-35

Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating or binding carbohydrate sidechains.


:

Pssm-ID: 214554  Cd Length: 121  Bit Score: 127.91  E-value: 7.07e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     412 PQLSVGVSFFFLSFYIQNHPFNSSLEDPSSNYYQELKRNISGLFLQIFNG-----DFLGISSIKFRSGSVVVESTVVFRE 486
Cdd:smart00200   1 PTQSFGVSLSVLSVEGENLQYSPSLEDPSSEEYQELVRDVEKLLEQIYGKtdlkpDFVGTEVIEFRNGSVVVDLGLLFNE 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 7305293     487 GTFSASDVKSQLIQHKKEAdDYNLTISEVKVNEMQFPPSAQS 528
Cdd:smart00200  81 GVTNGQDVEEDLLQVIKQA-AYSLKITNVNVVDVLDPDSADS 121
Chi1 super family cl43877
Chitinase [Carbohydrate transport and metabolism];
76-295 5.20e-07

Chitinase [Carbohydrate transport and metabolism];


The actual alignment was detected with superfamily member COG3469:

Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 52.83  E-value: 5.20e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293   76 ATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGG 155
Cdd:COG3469   5 STAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293  156 TSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATSlseDSASSPVAH 235
Cdd:COG3469  85 AAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTT---VSGTETATG 161

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293  236 GGTSSPATSPlrdSTSSPVHSSASIQNIKTTSDLASTPdhnGTSVTTTSSALGSATSPDH 295
Cdd:COG3469 162 GTTTTSTTTT---TTSASTTPSATTTATATTASGATTP---SATTTATTTGPPTPGLPKH 215
 
Name Accession Description Interval E-value
SEA smart00200
Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating ...
 412-528 7.07e-35

Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating or binding carbohydrate sidechains.


Pssm-ID: 214554  Cd Length: 121  Bit Score: 127.91  E-value: 7.07e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     412 PQLSVGVSFFFLSFYIQNHPFNSSLEDPSSNYYQELKRNISGLFLQIFNG-----DFLGISSIKFRSGSVVVESTVVFRE 486
Cdd:smart00200   1 PTQSFGVSLSVLSVEGENLQYSPSLEDPSSEEYQELVRDVEKLLEQIYGKtdlkpDFVGTEVIEFRNGSVVVDLGLLFNE 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 7305293     487 GTFSASDVKSQLIQHKKEAdDYNLTISEVKVNEMQFPPSAQS 528
Cdd:smart00200  81 GVTNGQDVEEDLLQVIKQA-AYSLKITNVNVVDVLDPDSADS 121
SEA pfam01390
SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed ...
 420-500 1.03e-09

SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed function of regulating or binding carbohydrate side chains. Recently a proteolytic activity has been shown for a SEA domain.


Pssm-ID: 460188  Cd Length: 100  Bit Score: 55.71  E-value: 1.03e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    420 FFFLSFYIQNHPFNSSLEDPSSNYYQELKRNISGLFLQIFNGDFLG---ISS--IKFRS--GSVVVESTVVFREGTFSAS 492
Cdd:pfam01390   2 YYTGSFKITNLQYTPDLGNPSSQEFKSLSRRIESLLNELFRNSSLRkqyIKShvLRLRPdgGSVVVDVVLVFRFPSTEPA 81


                  ....*...
gi 7305293    493 DVKSQLIQ 500
Cdd:pfam01390  82 LDREKLIE 89
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
76-295 5.20e-07

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 52.83  E-value: 5.20e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293   76 ATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGG 155
Cdd:COG3469   5 STAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293  156 TSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATSlseDSASSPVAH 235
Cdd:COG3469  85 AAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTT---VSGTETATG 161

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293  236 GGTSSPATSPlrdSTSSPVHSSASIQNIKTTSDLASTPdhnGTSVTTTSSALGSATSPDH 295
Cdd:COG3469 162 GTTTTSTTTT---TTSASTTPSATTTATATTASGATTP---SATTTATTTGPPTPGLPKH 215
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 84-375 4.94e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 49.91  E-value: 4.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     84 TSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSP 163
Cdd:pfam05109 450 SSTHVPTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTT 529

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    164 PgdstssPDHSSTSSPATRAPEDSTSTAVLSGTS-SPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAhgGTSSPA 242
Cdd:pfam05109 530 P------TPNATSPTLGKTSPTSAVTTPTPNATSpTPAVTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTV--GETSPQ 601

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    243 TSPLRDSTSSPVHSSASIQNIKTTSDLASTPDHNGTSVTTTSSALGSATSPDHSGTSTTTNSSESVLATTPVYSSMPFST 322
Cdd:pfam05109 602 ANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSDNSTSHMPLLTSAHPTGGENI 681

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7305293    323 TKVTSGSAIIPDHNGSSVLPTSSVLGSATSLVYNTSAIAT--------TPVSNGTQPSVPS 375
Cdd:pfam05109 682 TQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPgevnvtkgTPPKNATSPQAPS 742
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 53-294 5.26e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.78  E-value: 5.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     53 SDPATRPPGDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSlskdsnsSPVVHS 132
Cdd:PHA03307  121 PPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPS-------SPPAEP 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    133 GTSSAPATTAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPV 212
Cdd:PHA03307  194 PPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEAS 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    213 AHDDTSSPATSLSEDSASSPVAHGGTSSPATSPLRDSTSSPVHSSASIQNIKTTSDLASTPDHNGTSVTTTSSALGSATS 292
Cdd:PHA03307  274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSP 353


                  ..
gi 7305293    293 PD 294
Cdd:PHA03307  354 SR 355
 
Name Accession Description Interval E-value
SEA smart00200
Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating ...
 412-528 7.07e-35

Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating or binding carbohydrate sidechains.


Pssm-ID: 214554  Cd Length: 121  Bit Score: 127.91  E-value: 7.07e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     412 PQLSVGVSFFFLSFYIQNHPFNSSLEDPSSNYYQELKRNISGLFLQIFNG-----DFLGISSIKFRSGSVVVESTVVFRE 486
Cdd:smart00200   1 PTQSFGVSLSVLSVEGENLQYSPSLEDPSSEEYQELVRDVEKLLEQIYGKtdlkpDFVGTEVIEFRNGSVVVDLGLLFNE 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 7305293     487 GTFSASDVKSQLIQHKKEAdDYNLTISEVKVNEMQFPPSAQS 528
Cdd:smart00200  81 GVTNGQDVEEDLLQVIKQA-AYSLKITNVNVVDVLDPDSADS 121
SEA pfam01390
SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed ...
 420-500 1.03e-09

SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed function of regulating or binding carbohydrate side chains. Recently a proteolytic activity has been shown for a SEA domain.


Pssm-ID: 460188  Cd Length: 100  Bit Score: 55.71  E-value: 1.03e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    420 FFFLSFYIQNHPFNSSLEDPSSNYYQELKRNISGLFLQIFNGDFLG---ISS--IKFRS--GSVVVESTVVFREGTFSAS 492
Cdd:pfam01390   2 YYTGSFKITNLQYTPDLGNPSSQEFKSLSRRIESLLNELFRNSSLRkqyIKShvLRLRPdgGSVVVDVVLVFRFPSTEPA 81


                  ....*...
gi 7305293    493 DVKSQLIQ 500
Cdd:pfam01390  82 LDREKLIE 89
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
76-295 5.20e-07

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 52.83  E-value: 5.20e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293   76 ATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGG 155
Cdd:COG3469   5 STAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293  156 TSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATSlseDSASSPVAH 235
Cdd:COG3469  85 AAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTT---VSGTETATG 161

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293  236 GGTSSPATSPlrdSTSSPVHSSASIQNIKTTSDLASTPdhnGTSVTTTSSALGSATSPDH 295
Cdd:COG3469 162 GTTTTSTTTT---TTSASTTPSATTTATATTASGATTP---SATTTATTTGPPTPGLPKH 215
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
113-327 4.88e-06

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 49.37  E-value: 4.88e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293  113 TSSPATSLSKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAV 192
Cdd:COG3469   1 SSSVSTAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293  193 LSGTSSPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAHGGTSSPATSPLRdSTSSPVHSSASIQNIKTTSDLAST 272
Cdd:COG3469  81 TATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTT-SGASATSSAGSTTTTTTVSGTETA 159

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
gi 7305293  273 PDHNGTSVTTTSSALGSATSPDHSGTSTTTNSSESVLATTPVYSSMPFSTTKVTS 327
Cdd:COG3469 160 TGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLPK 214
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 84-375 4.94e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 49.91  E-value: 4.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     84 TSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSP 163
Cdd:pfam05109 450 SSTHVPTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTT 529

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    164 PgdstssPDHSSTSSPATRAPEDSTSTAVLSGTS-SPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAhgGTSSPA 242
Cdd:pfam05109 530 P------TPNATSPTLGKTSPTSAVTTPTPNATSpTPAVTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTV--GETSPQ 601

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    243 TSPLRDSTSSPVHSSASIQNIKTTSDLASTPDHNGTSVTTTSSALGSATSPDHSGTSTTTNSSESVLATTPVYSSMPFST 322
Cdd:pfam05109 602 ANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSDNSTSHMPLLTSAHPTGGENI 681

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7305293    323 TKVTSGSAIIPDHNGSSVLPTSSVLGSATSLVYNTSAIAT--------TPVSNGTQPSVPS 375
Cdd:pfam05109 682 TQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPgevnvtkgTPPKNATSPQAPS 742
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 53-294 5.26e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.78  E-value: 5.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     53 SDPATRPPGDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSlskdsnsSPVVHS 132
Cdd:PHA03307  121 PPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPS-------SPPAEP 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    133 GTSSAPATTAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPV 212
Cdd:PHA03307  194 PPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEAS 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    213 AHDDTSSPATSLSEDSASSPVAHGGTSSPATSPLRDSTSSPVHSSASIQNIKTTSDLASTPDHNGTSVTTTSSALGSATS 292
Cdd:PHA03307  274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSP 353


                  ..
gi 7305293    293 PD 294
Cdd:PHA03307  354 SR 355
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
47-255 5.27e-06

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 49.37  E-value: 5.27e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293   47 PVHSSNSDPATRPPGDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNS 126
Cdd:COG3469  11 TAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAAT 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293  127 SPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVD 206
Cdd:COG3469  91 STSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTT 170

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*....
gi 7305293  207 STSSPVahddTSSPATSLSEDSASSPVAHGGTSSPATSPLRDSTSSPVH 255
Cdd:COG3469 171 TTTSAS----TTPSATTTATATTASGATTPSATTTATTTGPPTPGLPKH 215
PHA03247 PHA03247
large tegument protein UL36; Provisional
 78-293 1.70e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 1.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     78 RAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPA-TSLSKDSNSSPVVHSGTSSAPATT---APVDSTSSPVVH 153
Cdd:PHA03247 2672 RAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPApHALVSATPLPPGPAAARQASPALPaapAPPAVPAGPATP 2751

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    154 GGTSSPATSPpgdstsspdhsstsspATRAPEDSTSTAVLSGTSSPATTAPvdstsspvahddtssPATSLSEDSASSPV 233
Cdd:PHA03247 2752 GGPARPARPP----------------TTAGPPAPAPPAAPAAGPPRRLTRP---------------AVASLSESRESLPS 2800

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    234 AHGGTSSPATSPLRDSTSSPVHSSASIQNIKTTSDLASTPDHNGTSVTTTSsaLGSATSP 293
Cdd:PHA03247 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLP--LGGSVAP 2858
PHA03247 PHA03247
large tegument protein UL36; Provisional
 53-371 2.10e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 2.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     53 SDPATRPPGDSTSS------PVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHG--------------- 111
Cdd:PHA03247 2571 PRPAPRPSEPAVTSrarrpdAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAAnepdphppptvpppe 2650

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    112 ---DTSSP--------ATSLSKDSN-SSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSP 179
Cdd:PHA03247 2651 rprDDPAPgrvsrprrARRLGRAAQaSSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    180 ATRAPedststavlsgTSSPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAhggtssPATSPLRDSTSSPVHSSAS 259
Cdd:PHA03247 2731 ASPAL-----------PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA------PAAGPPRRLTRPAVASLSE 2793

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    260 IQNiktTSDLASTPDHNGTSVTTTSSALGSATSPdhsgtSTTTNSSESVLATTPVYSSMPFSTTKVTSGSaIIPDHNGSS 339
Cdd:PHA03247 2794 SRE---SLPSPWDPADPPAAVLAPAAALPPAASP-----AGPLPPPTSAQPTAPPPPPGPPPPSLPLGGS-VAPGGDVRR 2864

                         330       340       350
                  ....*....|....*....|....*....|...
gi 7305293    340 VLPT-SSVLGSATSLVYNTSAIATTPVSNGTQP 371
Cdd:PHA03247 2865 RPPSrSPAAKPAAPARPPVRRLARPAVSRSTES 2897
PHA03247 PHA03247
large tegument protein UL36; Provisional
 80-274 2.95e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 2.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     80 PEDSTSTAVLSGTSSPATTAPVNSASSPVahgdTSSPATSLSKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSP 159
Cdd:PHA03247 2707 TPEPAPHALVSATPLPPGPAAARQASPAL----PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR 2782

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    160 ATSPPGDSTSSPDHSSTSSPATRAPEDSTS--TAVLSGTSSPATTAPVDSTSSPVAHDDTSSP-ATSLSEDSASSP---V 233
Cdd:PHA03247 2783 LTRPAVASLSESRESLPSPWDPADPPAAVLapAAALPPAASPAGPLPPPTSAQPTAPPPPPGPpPPSLPLGGSVAPggdV 2862

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 7305293    234 AHGGTSSPATSPLRDSTSSPVHSSASIQNIKTTSDLASTPD 274
Cdd:PHA03247 2863 RRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 88-213 6.32e-05

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 46.24  E-value: 6.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    88 VLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKdSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSPPgds 167
Cdd:PLN02217 561 LFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAP-STSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTPSSP--- 636

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 7305293   168 tsspdhsstsspatrapeDSTSTAVLSGTSSPATTAPVDSTSSPVA 213
Cdd:PLN02217 637 ------------------ESSIKVASTETASPESSIKVASTESSVS 664
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 24-339 1.65e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.78  E-value: 1.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     24 LPSEENSVTSSQDTSSSLASTTTPVHSSNSDPATRPPGDSTSSPVQSSTSSPATRAPEDSTSTavlsGTSSPATTAPVNS 103
Cdd:PHA03307   44 VSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSP----TPPGPSSPDPPPP 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    104 ASSPVAHGDTSSPATSLSKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSPPgdstsspdhsstsspATRA 183
Cdd:PHA03307  120 TPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPE---------------ETAR 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    184 PEDSTSTAVLSGTSSPATTAPVDSTSSPVAHdDTSSPATSLSEDSASSpvAHGGTSSPATSPLRDSTSSPVH----SSAS 259
Cdd:PHA03307  185 APSSPPAEPPPSTPPAAASPRPPRRSSPISA-SASSPAPAPGRSAADD--AGASSSDSSSSESSGCGWGPENecplPRPA 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    260 IQNIKTTSDLASTPDHNGTSVTTTSSA-----LGSATSPDHSGTSTTTNSSESVLATTPVYSSMPFSTTKVTSGSAIIPD 334
Cdd:PHA03307  262 PITLPTRIWEASGWNGPSSRPGPASSSsspreRSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAV 341


                  ....*
gi 7305293    335 HNGSS 339
Cdd:PHA03307  342 SPGPS 346
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 47-382 2.08e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 44.18  E-value: 2.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     47 PVHSSNSDPATRPPGDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAhgdTSSPATSLSKDSNS 126
Cdd:pfam17823 115 LAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPRT---AASSTTAASSTTAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    127 SPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSpPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVD 206
Cdd:pfam17823 192 SSAPTTAASSAPATLTPARGISTAATATGHPAAGTA-LAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    207 STSSPVAHddTSSPATSLSED-SASSPVAHGGTSSPATSpLRDSTSSPVHSSA------SIQNIKTTSDLASTPDHNGTS 279
Cdd:pfam17823 271 NMGDPHAR--RLSPAKHMPSDtMARNPAAPMGAQAQGPI-IQVSTDQPVHNTAgeptpsPSNTTLEPNTPKSVASTNLAV 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    280 VTTTSSALGSATSPDHSGTSTTTNSSESVLATTPVYSSMPFSTTKVTSGSAIIPDHNGSSVLPTSSVLGSATslvyNTSA 359
Cdd:pfam17823 348 VTTTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAGPGILLAPEQVATEATAGTASAGPTP----RSSG 423

                         330       340
                  ....*....|....*....|...
gi 7305293    360 IATTPVSNGTQPSVPSQYPVSPT 382
Cdd:pfam17823 424 DPKTLAMASCQLSTQGQYLVVTT 446
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
55-249 2.16e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.46  E-value: 2.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    55 PATRPPGDSTSSPVQSSTSSPATRAPedsTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGT 134
Cdd:PRK07003 372 VPARVAGAVPAPGARAAAAVGASAVP---AVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAP 448

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293   135 SSAPA-TTAPVDSTSSPVvhggTSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVdSTSSPVA 213
Cdd:PRK07003 449 VPAKAnARASADSRCDER----DAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA-SREDAPA 523

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 7305293   214 HDDTSSPATSLSEDSASSPVAHGGTSSPATSPLRDS 249
Cdd:PRK07003 524 AAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNA 559
motB PRK12799
flagellar motor protein MotB; Reviewed
 108-258 3.26e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 43.55  E-value: 3.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293   108 VAHGDTSSPATSLSKDSNSSPVVHSGTSSA---PATTAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPATRAP 184
Cdd:PRK12799 272 IEHENLDNRALDIEKATGLKQIDTHGTVPVaavTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSA 351

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7305293   185 EDSTSTAVLSGTSSPATTAPVDSTSSPVahddtSSPATSLSEDSASSPVAHGGTSSPATSPLRDSTSSPVHSSA 258
Cdd:PRK12799 352 GVLPSDVTLPGTVALPAAEPVNMQPQPM-----STTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDA 420
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 192-287 5.88e-04

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 43.15  E-value: 5.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293   192 VLSGTSSPATTAPVDSTSSPVAHDDTSSPATSLSEdSASSPVAHGGTS--------SPATSPLRDSTSSPVHSSASIQNI 263
Cdd:PLN02217 561 LFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAP-STSPPAGHLGSPpatpskivSPSTSPPASHLGSPSTTPSSPESS 639

                         90       100
                 ....*....|....*....|....
gi 7305293   264 KTTSDLASTPDHNGTSVTTTSSAL 287
Cdd:PLN02217 640 IKVASTETASPESSIKVASTESSV 663
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 49-253 6.01e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.24  E-value: 6.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     49 HSSNSDPATRPPGDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSP 128
Cdd:PHA03307  241 SSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSS 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    129 VVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSPPgdstsspdhsSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDST 208
Cdd:PHA03307  321 SRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRP----------PPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRA 390

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 7305293    209 SSPVAHDDTSSPATSLSEDS--ASSPVAHGGTSS--PATSPLRDSTSSP 253
Cdd:PHA03307  391 RAAVAGRARRRDATGRFPAGrpRPSPLDAGAASGafYARYPLLTPSGEP 439
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 76-234 9.17e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 41.86  E-value: 9.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    76 ATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVvHSGTSSAPATTAPVDSTSSPVVHGG 155
Cdd:PTZ00436 198 AAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPA-KAAAPPAKAAAPPAKAAAPPAKAAA 276

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7305293   156 TSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATslsedSASSPVA 234
Cdd:PTZ00436 277 PPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAK-----AAAAPVG 350
motB PRK12799
flagellar motor protein MotB; Reviewed
 93-209 1.19e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 41.62  E-value: 1.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    93 SSPATTAPVNSASSPVAHGDTSSPATSlSKDSNSSPVVHS--GTSSAPATTAPVDSTSSPVVH--GGTSSPATSPPGDST 168
Cdd:PRK12799 298 TVPVAAVTPSSAVTQSSAITPSSAAIP-SPAVIPSSVTTQsaTTTQASAVALSSAGVLPSDVTlpGTVALPAAEPVNMQP 376

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 7305293   169 SSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTS 209
Cdd:PRK12799 377 QPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTS 417
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
187-382 1.20e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 41.66  E-value: 1.20e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293  187 STSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAHGGTSSPATSPLRDSTSSPVHSSASIQNIKTT 266
Cdd:COG3469   3 SVSTAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATA 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293  267 SDLASTPDHNGTSVTTTSSALGSATSPDHSGTSTTTNSSESVLATTPVYSSMPFSTTKVTSGSAIIPDHNGSSVLPTSSV 346
Cdd:COG3469  83 TAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGG 162

                       170       180       190
                ....*....|....*....|....*....|....*.
gi 7305293  347 LGSATSLVYNTSAIATTPVSNGTQPSVPSQYPVSPT 382
Cdd:COG3469 163 TTTTSTTTTTTSASTTPSATTTATATTASGATTPSA 198
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
84-212 1.27e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 41.76  E-value: 1.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    84 TSTAVLSGTSSPATTAPVNSASSPVAhgdTSSPATSLsKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSP 163
Cdd:PRK11907   7 SKSAVALTLALLTASNPKLAQAEEIV---TTTPATST-EAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSD 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 7305293   164 PgdstsspdhsstsspatrAPEDSTSTAVLSGTSSPATTapvdSTSSPV 212
Cdd:PRK11907  83 P------------------TSEATDTTTSEARTVTPAAT----ETSKPV 109
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
55-245 1.67e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.76  E-value: 1.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    55 PATRPPGDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGT 134
Cdd:PRK07003 397 PAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGS 476

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293   135 SSAPATTAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVlsgTSSPATTAPVDSTSSPVAH 214
Cdd:PRK07003 477 ASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARP---PTPAAAAPAARAGGAAAAL 553

                        170       180       190
                 ....*....|....*....|....*....|.
gi 7305293   215 DDTSSPATSLSEDSASSPvahGGTSSPATSP 245
Cdd:PRK07003 554 DVLRNAGMRVSSDRGARA---AAAAKPAAAP 581
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 51-271 1.71e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 1.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     51 SNSDPATRPPGDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDS---NSS 127
Cdd:PHA03307  176 LSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWgpeNEC 255

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    128 PVVHSGTSSAP-ATTAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTStavlSGTSSPATTAPVD 206
Cdd:PHA03307  256 PLPRPAPITLPtRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSS----SSSRESSSSSTSS 331

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7305293    207 STSSPVAHDDTSSPATSLSEDSASSPVAHGGTSSPATSPLRDSTSSPVHSSASIQNIKTTSDLAS 271
Cdd:PHA03307  332 SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAG 396
ROM1 COG5422
RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction ...
 76-323 1.73e-03

RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms];


Pssm-ID: 227709 [Multi-domain]  Cd Length: 1175  Bit Score: 41.80  E-value: 1.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    76 ATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVhSGTSSAPaTTAPVDSTSSPVVHGG 155
Cdd:COG5422   19 APRKSDAFVSKQLLPPRRLQRKLNPISIRNGADNDIINSESKESFGKYALGHQIF-SSFSSSP-KLFQRRNSAGPITHSP 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293   156 TSSPATSPPgdstsSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAH 235
Cdd:COG5422   97 SATSSTSSL-----NSNDGDQFSPASDSLSFNPSSTQSRKDSGPGDGSPVQKRKNPLLPSSSTHGTHPPIVFTDNNGSHA 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293   236 GGTSSPATSPLRDSTSSPVHSSASIQNIKT----TSDLASTPD---HNGTSVTTTSSALGSATSPDHSGTSTTTNSSESV 308
Cdd:COG5422  172 GAPNARSRKEIPSLGSQSMQLPSPHFRQKFsssdTSNGFSYPSirkNSRHSSNSMPSFPHSSTAVLLKRHSGSSGASLIS 251

                        250
                 ....*....|....*
gi 7305293   309 LATTPVYSSMPFSTT 323
Cdd:COG5422  252 SNITPSSSNSEAMST 266
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
90-259 1.76e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.37  E-value: 1.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    90 SGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGTSSA-PATTAPVDSTSSPVVHGGTSSPATSPPGDST 168
Cdd:PRK07003 363 TGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALaPKAAAAAAATRAEAPPAAPAPPATADRGDDA 442

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293   169 SSPDHSSTSSPATRAPEDSTS-------TAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAHGGTSSP 241
Cdd:PRK07003 443 ADGDAPVPAKANARASADSRCderdaqpPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAP 522

                        170
                 ....*....|....*...
gi 7305293   242 ATSPLRDSTSSPVHSSAS 259
Cdd:PRK07003 523 AAAAPPAPEARPPTPAAA 540
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
180-271 4.75e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 40.22  E-value: 4.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293   180 ATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAhDDTSSPATSLSEDSASSPVAHGGTS-----SPATSPLRDSTSSPV 254
Cdd:PRK11907  31 IVTTTPATSTEAEQTTPVESDATEEADNTETPVA-ATTAAEAPSSSETAETSDPTSEATDtttseARTVTPAATETSKPV 109

                         90
                 ....*....|....*..
gi 7305293   255 HSSASIQNIKTTSDLAS 271
Cdd:PRK11907 110 EGQTVDVRILSTTDLHT 126
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 47-292 5.72e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 39.90  E-value: 5.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     47 PVHSSNSDPATRPPGDSTSSPVQSSTSSPATRAPE-DSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSN 125
Cdd:pfam05109 518 PNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTpNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTVGE 597

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    126 SSPVVHS------GTSSAPATTAPVDSTSSPVVHGGTSSPATSppgdstsspdhsstSSPATRAPEDSTSTAVLSGTSSP 199
Cdd:pfam05109 598 TSPQANTtnhtlgGTSSTPVVTSPPKNATSAVTTGQHNITSSS--------------TSSMSLRPSSISETLSPSTSDNS 663

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    200 ATTAPVDSTSSPVAHDD---TSSPATSLSEDSASSPVAHGGTSSPATSPLRDSTSS-PVHSSASIQNIKTTSDLASTPDH 275
Cdd:pfam05109 664 TSHMPLLTSAHPTGGENitqVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTkPGEVNVTKGTPPKNATSPQAPSG 743

                         250
                  ....*....|....*..
gi 7305293    276 NGTSVTTTSSALGSATS 292
Cdd:pfam05109 744 QKTAVPTVTSTGGKANS 760
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 82-382 6.32e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 39.56  E-value: 6.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     82 DSTSTAVLSGTSSPATTAPVN--SASSPVAHGDTSSPATSLSKDSN-SSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSS 158
Cdd:pfam17823  51 DNKSSEQ*NFCAATAAPAPVTltKGTSAAHLNSTEVTAEHTPHGTDlSEPATREGAADGAASRALAAAASSSPSSAAQSL 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    159 PATS--PPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAHG 236
Cdd:pfam17823 131 PAAIaaLPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPAR 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    237 GTSSPAT---SPLRDSTSSPVHSSASIQNIKTTSDLASTPDHNGTSVT-----TTSSALGSATSPDHSGTSTTTNSSESV 308
Cdd:pfam17823 211 GISTAATatgHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAaagtvASAAGTINMGDPHARRLSPAKHMPSDT 290

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7305293    309 LATTPVYSSMPFSTTKVTSGSAIIPDHNGS-----SVLPTSSVLGSATSLVYNTSAIATTPVSNGTQPSVpSQYPVSPT 382
Cdd:pfam17823 291 MARNPAAPMGAQAQGPIIQVSTDQPVHNTAgeptpSPSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPSA-SPVPVLHT 368
rne PRK10811
ribonuclease E; Reviewed
 76-245 6.86e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 39.64  E-value: 6.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293     76 ATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGG 155
Cdd:PRK10811  899 VVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQ 978

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    156 TSSPATSPPgdsTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPV-DSTSSPVAHDDTSSPATSLSEDSASSpvA 234
Cdd:PRK10811  979 PAAPVVAEV---AAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPApEYVPEAPRHSDWQRPTFAFEGKGAAG--G 1053

                         170
                  ....*....|....
gi 7305293    235 HGGT---SSPATSP 245
Cdd:PRK10811 1054 HSAThhaSAPATRP 1067
PRK10118 PRK10118
flagellar hook length control protein FliK;
49-152 7.34e-03

flagellar hook length control protein FliK;


Pssm-ID: 236652 [Multi-domain]  Cd Length: 408  Bit Score: 39.08  E-value: 7.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7305293    49 HSSNSDPATRPPGDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSL-------- 120
Cdd:PRK10118 152 GQDNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTTAQPDDAPGTPAQPLTPLaaeaqaka 231

                         90       100       110
                 ....*....|....*....|....*....|...
gi 7305293   121 SKDSNSSPVVHS-GTSSAPATTAPVDSTSSPVV 152
Cdd:PRK10118 232 EVISTPSPVTAAaSPTITPHQTQPLPTAAAPVL 264
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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