NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|47059073|ref|NP_035710|]
View 

thrombospondin-1 isoform 1 precursor [Mus musculus]

Protein Classification

TSP1 and TSP_C domain-containing protein( domain architecture ID 10430205)

protein containing domains VWC, TSP_1, TSP1, and TSP_C

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TSP_C pfam05735
Thrombospondin C-terminal region; This region is found at the C-terminus of thrombospondin and ...
 973-1170 2.07e-117

Thrombospondin C-terminal region; This region is found at the C-terminus of thrombospondin and related proteins.


:

Pssm-ID: 461725  Cd Length: 198  Bit Score: 361.57  E-value: 2.07e-117
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073    973 QNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTN 1052
Cdd:pfam05735    1 QIDPIWVIRNQGREIQQTDNSDPGLAIGFDRFGSVDFSGTFFVNTDDDDDYIGFVFGYQSNSKFYVVMWKQVNQSYWPFK 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073   1053 PTRAQGYSGLSVKVVNSTTGPGEHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKI 1132
Cdd:pfam05735   81 PFRATGLKGIQLKVVKSTTGPGENLRNALWHTGDTTNQVRLLWHDPTWRGWKDRTAYRWHLQHRPSIGLIRVRVYEGITL 160

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 47059073   1133 MADSGPIYDKTYAGGRLGLFVFSQEMVFFSDMKYECRD 1170
Cdd:pfam05735  161 LADSGNVYDTTIRGGRLGVFCFSQENVIWSDLKYKCLD 198
LamG super family cl22861
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have ...
 26-221 6.42e-40

Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.


The actual alignment was detected with superfamily member smart00210:

Pssm-ID: 473984  Cd Length: 184  Bit Score: 145.96  E-value: 6.42e-40
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073      26 GDNGVFDIFELiggarrGPGRRLVKGQDLSSPAFRIENanliPAVPDDKFQDLLDAVWAdKGFIFLASLRQMKKTRGTLL 105
Cdd:smart00210    3 DLLQVFDLPSL------SFAIRQVVGPEPGSPAYRLGD----PALVPQPTRDLFPSGLP-EDFSLLTTFRQTPKSRGVLF 71

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073     106 AVERKDNTGQiFSVVSNGKAGTLDLS-LSLPGKQQVVSVEEALLATGQWKSITLFVQEDRAQLYIDCDKMESAELDVPIQ 184
Cdd:smart00210   72 AIYDAQNVRQ-FGLEVDGRANTLLLRyQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQ 150

                           170       180       190
                    ....*....|....*....|....*....|....*..
gi 47059073     185 sifTRDLASVARLRVAKGDVNDNFQGVLQNVRFVFGT 221
Cdd:smart00210  151 ---PPIDTDGIEVRGAQAADRKPFQGDLQQLKIVCDP 184
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 439-491 2.40e-18

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


:

Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 79.55  E-value: 2.40e-18
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|...
gi 47059073     439 WSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACP 491
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 496-548 3.09e-18

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


:

Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 79.55  E-value: 3.09e-18
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|...
gi 47059073     496 WGPWSPWDICSVTCGGGVQRRSRLCNNPTPQFGGKDCVGDVTENQVCNKQDCP 548
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 319-373 2.85e-17

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


:

Pssm-ID: 278520  Cd Length: 57  Bit Score: 76.69  E-value: 2.85e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 47059073    319 CFHNGVQYKNNEEWTVDSCTECHCQNSVTICKKVSCPIMPCSNAT--VPDGECCPRC 373
Cdd:pfam00093    1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPPLDCPNPRleIPPGECCPVC 57
TSP_1 pfam00090
Thrombospondin type 1 domain;
384-429 2.12e-13

Thrombospondin type 1 domain;


:

Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 65.52  E-value: 2.12e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 47059073    384 SPWSEWTSCSATCGNGIQQRGRSCDSL---NNRCEGSSVQTRTCHIQEC 429
Cdd:pfam00090    1 SPWSPWSPCSVTCGKGIQVRQRTCKSPfpgGEPCTGDDIETQACKMDKC 49
TSP_3 pfam02412
Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which ...
 847-883 1.64e-09

Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats. The repeat lacks defined secondary structure.


:

Pssm-ID: 367074  Cd Length: 36  Bit Score: 54.29  E-value: 1.64e-09
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 47059073    847 DSDSDLIGDTCDNnqDIDEDGHQNNLDNCPYVPNANQ 883
Cdd:pfam02412    2 DSDSDGVGDACDN--DFDNDGVPDLLDNCPNNANIDQ 36
TSP_3 pfam02412
Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which ...
 787-822 1.75e-07

Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats. The repeat lacks defined secondary structure.


:

Pssm-ID: 367074  Cd Length: 36  Bit Score: 48.51  E-value: 1.75e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 47059073    787 ADTDKNGEGDACAVDIDGDGILNERDNCQYVYNVDQ 822
Cdd:pfam02412    1 TDSDSDGVGDACDNDFDNDGVPDLLDNCPNNANIDQ 36
TSP_3 pfam02412
Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which ...
 920-950 7.31e-07

Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats. The repeat lacks defined secondary structure.


:

Pssm-ID: 367074  Cd Length: 36  Bit Score: 46.59  E-value: 7.31e-07
                           10        20        30
                   ....*....|....*....|....*....|.
gi 47059073    920 KDSDGDGRGDACKDDFDHDNVPDIDDICPEN 950
Cdd:pfam02412    1 TDSDSDGVGDACDNDFDNDGVPDLLDNCPNN 31
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
 651-690 1.11e-06

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


:

Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 46.05  E-value: 1.11e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 47059073    651 CTDGTHDCNKNAKCNYlghySDPMYRCECKPGYAGNGIIC 690
Cdd:pfam12947    1 CSDNNGGCHPNATCTN----TGGSFTCTCNDGYTGDGVTC 36
 
Name Accession Description Interval E-value
TSP_C pfam05735
Thrombospondin C-terminal region; This region is found at the C-terminus of thrombospondin and ...
 973-1170 2.07e-117

Thrombospondin C-terminal region; This region is found at the C-terminus of thrombospondin and related proteins.


Pssm-ID: 461725  Cd Length: 198  Bit Score: 361.57  E-value: 2.07e-117
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073    973 QNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTN 1052
Cdd:pfam05735    1 QIDPIWVIRNQGREIQQTDNSDPGLAIGFDRFGSVDFSGTFFVNTDDDDDYIGFVFGYQSNSKFYVVMWKQVNQSYWPFK 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073   1053 PTRAQGYSGLSVKVVNSTTGPGEHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKI 1132
Cdd:pfam05735   81 PFRATGLKGIQLKVVKSTTGPGENLRNALWHTGDTTNQVRLLWHDPTWRGWKDRTAYRWHLQHRPSIGLIRVRVYEGITL 160

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 47059073   1133 MADSGPIYDKTYAGGRLGLFVFSQEMVFFSDMKYECRD 1170
Cdd:pfam05735  161 LADSGNVYDTTIRGGRLGVFCFSQENVIWSDLKYKCLD 198
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 26-221 6.42e-40

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 145.96  E-value: 6.42e-40
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073      26 GDNGVFDIFELiggarrGPGRRLVKGQDLSSPAFRIENanliPAVPDDKFQDLLDAVWAdKGFIFLASLRQMKKTRGTLL 105
Cdd:smart00210    3 DLLQVFDLPSL------SFAIRQVVGPEPGSPAYRLGD----PALVPQPTRDLFPSGLP-EDFSLLTTFRQTPKSRGVLF 71

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073     106 AVERKDNTGQiFSVVSNGKAGTLDLS-LSLPGKQQVVSVEEALLATGQWKSITLFVQEDRAQLYIDCDKMESAELDVPIQ 184
Cdd:smart00210   72 AIYDAQNVRQ-FGLEVDGRANTLLLRyQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQ 150

                           170       180       190
                    ....*....|....*....|....*....|....*..
gi 47059073     185 sifTRDLASVARLRVAKGDVNDNFQGVLQNVRFVFGT 221
Cdd:smart00210  151 ---PPIDTDGIEVRGAQAADRKPFQGDLQQLKIVCDP 184
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 439-491 2.40e-18

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 79.55  E-value: 2.40e-18
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|...
gi 47059073     439 WSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACP 491
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 496-548 3.09e-18

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 79.55  E-value: 3.09e-18
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|...
gi 47059073     496 WGPWSPWDICSVTCGGGVQRRSRLCNNPTPQFGGKDCVGDVTENQVCNKQDCP 548
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 319-373 2.85e-17

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


Pssm-ID: 278520  Cd Length: 57  Bit Score: 76.69  E-value: 2.85e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 47059073    319 CFHNGVQYKNNEEWTVDSCTECHCQNSVTICKKVSCPIMPCSNAT--VPDGECCPRC 373
Cdd:pfam00093    1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPPLDCPNPRleIPPGECCPVC 57
TSP_1 pfam00090
Thrombospondin type 1 domain;
440-490 1.54e-16

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 74.38  E-value: 1.54e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 47059073    440 SHWSPWSSCSVTCGDGVITRIRLCNSPSPQmnGKPCEGEARETKACKKDAC 490
Cdd:pfam00090    1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPG--GEPCTGDDIETQACKMDKC 49
VWC smart00214
von Willebrand factor (vWF) type C domain;
319-373 1.87e-14

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 68.70  E-value: 1.87e-14
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*....
gi 47059073     319 CFHNGVQYKNNEEWTVDSCTECHCQNSVTI-CKKVSCPIMP-CSNAT--VPDGECCPRC 373
Cdd:smart00214    1 CVHNGRVYNDGETWKPDPCQICTCLDGTTVlCDPVECPPPPdCPNPErvKPPGECCPRC 59
TSP_1 pfam00090
Thrombospondin type 1 domain;
497-547 5.05e-14

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 67.44  E-value: 5.05e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 47059073    497 GPWSPWDICSVTCGGGVQRRSRLCNNPTPqfGGKDCVGDVTENQVCNKQDC 547
Cdd:pfam00090    1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFP--GGEPCTGDDIETQACKMDKC 49
TSP_1 pfam00090
Thrombospondin type 1 domain;
384-429 2.12e-13

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 65.52  E-value: 2.12e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 47059073    384 SPWSEWTSCSATCGNGIQQRGRSCDSL---NNRCEGSSVQTRTCHIQEC 429
Cdd:pfam00090    1 SPWSPWSPCSVTCGKGIQVRQRTCKSPfpgGEPCTGDDIETQACKMDKC 49
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 383-430 7.00e-13

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 64.15  E-value: 7.00e-13
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|...
gi 47059073     383 WSPWSEWTSCSATCGNGIQQRGRSCDSLNNR-----CEGSSVQTRTCHIQECD 430
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQngggpCTGEDVETRACNEQPCP 53
TSP_3 pfam02412
Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which ...
 847-883 1.64e-09

Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats. The repeat lacks defined secondary structure.


Pssm-ID: 367074  Cd Length: 36  Bit Score: 54.29  E-value: 1.64e-09
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 47059073    847 DSDSDLIGDTCDNnqDIDEDGHQNNLDNCPYVPNANQ 883
Cdd:pfam02412    2 DSDSDGVGDACDN--DFDNDGVPDLLDNCPNNANIDQ 36
TSP_3 pfam02412
Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which ...
 787-822 1.75e-07

Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats. The repeat lacks defined secondary structure.


Pssm-ID: 367074  Cd Length: 36  Bit Score: 48.51  E-value: 1.75e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 47059073    787 ADTDKNGEGDACAVDIDGDGILNERDNCQYVYNVDQ 822
Cdd:pfam02412    1 TDSDSDGVGDACDNDFDNDGVPDLLDNCPNNANIDQ 36
TSP_3 pfam02412
Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which ...
 920-950 7.31e-07

Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats. The repeat lacks defined secondary structure.


Pssm-ID: 367074  Cd Length: 36  Bit Score: 46.59  E-value: 7.31e-07
                           10        20        30
                   ....*....|....*....|....*....|.
gi 47059073    920 KDSDGDGRGDACKDDFDHDNVPDIDDICPEN 950
Cdd:pfam02412    1 TDSDSDGVGDACDNDFDNDGVPDLLDNCPNN 31
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
 651-690 1.11e-06

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 46.05  E-value: 1.11e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 47059073    651 CTDGTHDCNKNAKCNYlghySDPMYRCECKPGYAGNGIIC 690
Cdd:pfam12947    1 CSDNNGGCHPNATCTN----TGGSFTCTCNDGYTGDGVTC 36
Laminin_G_2 pfam02210
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G ...
 124-217 5.88e-05

Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.


Pssm-ID: 460494 [Multi-domain]  Cd Length: 126  Bit Score: 43.95  E-value: 5.88e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073    124 KAGTLDLSLSLPGKQQVVSVEEALLATGQWKSITLFVQEDRAQLYID-CDKMESAELDVPIQSIFTRDL---ASVARLRV 199
Cdd:pfam02210   26 VNGRLVLRYDLGSGPESLLSSGKNLNDGQWHSVRVERNGNTLTLSVDgQTVVSSLPPGESLLLNLNGPLylgGLPPLLLL 105

                           90
                   ....*....|....*...
gi 47059073    200 AKGDVNDNFQGVLQNVRF 217
Cdd:pfam02210  106 PALPVRAGFVGCIRDVRV 123
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 497-550 2.67e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 41.87  E-value: 2.67e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 47059073   497 GPWSPWDICSVTCGGGVQRRSRlcnnPTPQFGgkdCVGDVTENqvCNKQDCPID 550
Cdd:PTZ00441  241 GPWDEWTPCSVTCGKGTHSRSR----PILHEG---CTTHMVEE--CEEEECPVE 285
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 385-429 2.72e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 41.87  E-value: 2.72e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 47059073   385 PWSEWTSCSATCGNGIQQRGRscDSLNNRCegSSVQTRTCHIQEC 429
Cdd:PTZ00441  242 PWDEWTPCSVTCGKGTHSRSR--PILHEGC--TTHMVEECEEEEC 282
LamG cd00110
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have ...
 124-217 8.18e-03

Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.


Pssm-ID: 238058 [Multi-domain]  Cd Length: 151  Bit Score: 38.17  E-value: 8.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073  124 KAGTLDLSLSLPGKQQVVSVEEaLLATGQWKSITLFVQEDRAQLYIDCDKMESAELDVPIQSIFTRDL----ASVARLRV 199
Cdd:cd00110   54 EDGRLVLRYDLGSGSLVLSSKT-PLNDGQWHSVSVERNGRSVTLSVDGERVVESGSPGGSALLNLDGPlylgGLPEDLKS 132

                         90
                 ....*....|....*...
gi 47059073  200 AKGDVNDNFQGVLQNVRF 217
Cdd:cd00110  133 PGLPVSPGFVGCIRDLKV 150
 
Name Accession Description Interval E-value
TSP_C pfam05735
Thrombospondin C-terminal region; This region is found at the C-terminus of thrombospondin and ...
 973-1170 2.07e-117

Thrombospondin C-terminal region; This region is found at the C-terminus of thrombospondin and related proteins.


Pssm-ID: 461725  Cd Length: 198  Bit Score: 361.57  E-value: 2.07e-117
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073    973 QNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTN 1052
Cdd:pfam05735    1 QIDPIWVIRNQGREIQQTDNSDPGLAIGFDRFGSVDFSGTFFVNTDDDDDYIGFVFGYQSNSKFYVVMWKQVNQSYWPFK 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073   1053 PTRAQGYSGLSVKVVNSTTGPGEHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKI 1132
Cdd:pfam05735   81 PFRATGLKGIQLKVVKSTTGPGENLRNALWHTGDTTNQVRLLWHDPTWRGWKDRTAYRWHLQHRPSIGLIRVRVYEGITL 160

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 47059073   1133 MADSGPIYDKTYAGGRLGLFVFSQEMVFFSDMKYECRD 1170
Cdd:pfam05735  161 LADSGNVYDTTIRGGRLGVFCFSQENVIWSDLKYKCLD 198
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 26-221 6.42e-40

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 145.96  E-value: 6.42e-40
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073      26 GDNGVFDIFELiggarrGPGRRLVKGQDLSSPAFRIENanliPAVPDDKFQDLLDAVWAdKGFIFLASLRQMKKTRGTLL 105
Cdd:smart00210    3 DLLQVFDLPSL------SFAIRQVVGPEPGSPAYRLGD----PALVPQPTRDLFPSGLP-EDFSLLTTFRQTPKSRGVLF 71

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073     106 AVERKDNTGQiFSVVSNGKAGTLDLS-LSLPGKQQVVSVEEALLATGQWKSITLFVQEDRAQLYIDCDKMESAELDVPIQ 184
Cdd:smart00210   72 AIYDAQNVRQ-FGLEVDGRANTLLLRyQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQ 150

                           170       180       190
                    ....*....|....*....|....*....|....*..
gi 47059073     185 sifTRDLASVARLRVAKGDVNDNFQGVLQNVRFVFGT 221
Cdd:smart00210  151 ---PPIDTDGIEVRGAQAADRKPFQGDLQQLKIVCDP 184
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 439-491 2.40e-18

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 79.55  E-value: 2.40e-18
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|...
gi 47059073     439 WSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACP 491
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 496-548 3.09e-18

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 79.55  E-value: 3.09e-18
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|...
gi 47059073     496 WGPWSPWDICSVTCGGGVQRRSRLCNNPTPQFGGKDCVGDVTENQVCNKQDCP 548
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 319-373 2.85e-17

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


Pssm-ID: 278520  Cd Length: 57  Bit Score: 76.69  E-value: 2.85e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 47059073    319 CFHNGVQYKNNEEWTVDSCTECHCQNSVTICKKVSCPIMPCSNAT--VPDGECCPRC 373
Cdd:pfam00093    1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPPLDCPNPRleIPPGECCPVC 57
TSP_1 pfam00090
Thrombospondin type 1 domain;
440-490 1.54e-16

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 74.38  E-value: 1.54e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 47059073    440 SHWSPWSSCSVTCGDGVITRIRLCNSPSPQmnGKPCEGEARETKACKKDAC 490
Cdd:pfam00090    1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPG--GEPCTGDDIETQACKMDKC 49
VWC smart00214
von Willebrand factor (vWF) type C domain;
319-373 1.87e-14

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 68.70  E-value: 1.87e-14
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*....
gi 47059073     319 CFHNGVQYKNNEEWTVDSCTECHCQNSVTI-CKKVSCPIMP-CSNAT--VPDGECCPRC 373
Cdd:smart00214    1 CVHNGRVYNDGETWKPDPCQICTCLDGTTVlCDPVECPPPPdCPNPErvKPPGECCPRC 59
TSP_1 pfam00090
Thrombospondin type 1 domain;
497-547 5.05e-14

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 67.44  E-value: 5.05e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 47059073    497 GPWSPWDICSVTCGGGVQRRSRLCNNPTPqfGGKDCVGDVTENQVCNKQDC 547
Cdd:pfam00090    1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFP--GGEPCTGDDIETQACKMDKC 49
TSP_1 pfam00090
Thrombospondin type 1 domain;
384-429 2.12e-13

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 65.52  E-value: 2.12e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 47059073    384 SPWSEWTSCSATCGNGIQQRGRSCDSL---NNRCEGSSVQTRTCHIQEC 429
Cdd:pfam00090    1 SPWSPWSPCSVTCGKGIQVRQRTCKSPfpgGEPCTGDDIETQACKMDKC 49
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 383-430 7.00e-13

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 64.15  E-value: 7.00e-13
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|...
gi 47059073     383 WSPWSEWTSCSATCGNGIQQRGRSCDSLNNR-----CEGSSVQTRTCHIQECD 430
Cdd:smart00209    1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQngggpCTGEDVETRACNEQPCP 53
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 497-547 1.14e-09

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 54.98  E-value: 1.14e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 47059073    497 GPWSPWDICSVTCGGGVQRRSRLCNNPtPQFGGKDCvGDVTENQVCNKQDC 547
Cdd:pfam19028    4 SEWSEWSECSVTCGGGVQTRTRTVIVE-PQNGGRPC-PELLERRPCNLPPC 52
TSP_3 pfam02412
Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which ...
 847-883 1.64e-09

Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats. The repeat lacks defined secondary structure.


Pssm-ID: 367074  Cd Length: 36  Bit Score: 54.29  E-value: 1.64e-09
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 47059073    847 DSDSDLIGDTCDNnqDIDEDGHQNNLDNCPYVPNANQ 883
Cdd:pfam02412    2 DSDSDGVGDACDN--DFDNDGVPDLLDNCPNNANIDQ 36
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 440-490 3.34e-09

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 53.82  E-value: 3.34e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 47059073    440 SHWSPWSSCSVTCGDGVITRIRLCNSPsPQMNGKPCeGEARETKACKKDAC 490
Cdd:pfam19028    4 SEWSEWSECSVTCGGGVQTRTRTVIVE-PQNGGRPC-PELLERRPCNLPPC 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 384-429 1.38e-07

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 49.20  E-value: 1.38e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 47059073    384 SPWSEWTSCSATCGNGIQQR-----------GRSCDSLnnrcegssVQTRTCHIQEC 429
Cdd:pfam19028    4 SEWSEWSECSVTCGGGVQTRtrtvivepqngGRPCPEL--------LERRPCNLPPC 52
TSP_3 pfam02412
Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which ...
 787-822 1.75e-07

Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats. The repeat lacks defined secondary structure.


Pssm-ID: 367074  Cd Length: 36  Bit Score: 48.51  E-value: 1.75e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 47059073    787 ADTDKNGEGDACAVDIDGDGILNERDNCQYVYNVDQ 822
Cdd:pfam02412    1 TDSDSDGVGDACDNDFDNDGVPDLLDNCPNNANIDQ 36
TSP_3 pfam02412
Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which ...
 920-950 7.31e-07

Thrombospondin type 3 repeat; The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats. The repeat lacks defined secondary structure.


Pssm-ID: 367074  Cd Length: 36  Bit Score: 46.59  E-value: 7.31e-07
                           10        20        30
                   ....*....|....*....|....*....|.
gi 47059073    920 KDSDGDGRGDACKDDFDHDNVPDIDDICPEN 950
Cdd:pfam02412    1 TDSDSDGVGDACDNDFDNDGVPDLLDNCPNN 31
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
 651-690 1.11e-06

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 46.05  E-value: 1.11e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 47059073    651 CTDGTHDCNKNAKCNYlghySDPMYRCECKPGYAGNGIIC 690
Cdd:pfam12947    1 CSDNNGGCHPNATCTN----TGGSFTCTCNDGYTGDGVTC 36
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 497-547 1.45e-05

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 43.60  E-value: 1.45e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 47059073    497 GPWSPwdiCSVTCGGGVQRRSRLCNNPTPQ--FGGKDCVGDV--TENQVCNKQDC 547
Cdd:pfam19030    4 GPWGE---CSVTCGGGVQTRLVQCVQKGGGsiVPDSECSAQKkpPETQSCNLKPC 55
Laminin_G_2 pfam02210
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G ...
 124-217 5.88e-05

Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.


Pssm-ID: 460494 [Multi-domain]  Cd Length: 126  Bit Score: 43.95  E-value: 5.88e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073    124 KAGTLDLSLSLPGKQQVVSVEEALLATGQWKSITLFVQEDRAQLYID-CDKMESAELDVPIQSIFTRDL---ASVARLRV 199
Cdd:pfam02210   26 VNGRLVLRYDLGSGPESLLSSGKNLNDGQWHSVRVERNGNTLTLSVDgQTVVSSLPPGESLLLNLNGPLylgGLPPLLLL 105

                           90
                   ....*....|....*...
gi 47059073    200 AKGDVNDNFQGVLQNVRF 217
Cdd:pfam02210  106 PALPVRAGFVGCIRDVRV 123
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 444-490 1.12e-03

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 38.20  E-value: 1.12e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 47059073    444 PWSSCSVTCGDGVITRIRLCNSPSPQ--MNGKPCEGEAR--ETKACKKDAC 490
Cdd:pfam19030    5 PWGECSVTCGGGVQTRLVQCVQKGGGsiVPDSECSAQKKppETQSCNLKPC 55
LamG smart00282
Laminin G domain;
99-217 2.59e-03

Laminin G domain;


Pssm-ID: 214598 [Multi-domain]  Cd Length: 132  Bit Score: 39.24  E-value: 2.59e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073      99 KTRGTLLAVERKdNTGQIFSV-VSNGKagtLDLSLSLPGKQQVVSVEEALLATGQWKSITLFVQEDRAQLYIDCDKMESA 177
Cdd:smart00282   10 SPNGLLLYAGSK-GGGDYLALeLRDGR---LVLRYDLGSGPARLTSDPTPLNDGQWHRVAVERNGRSVTLSVDGGNRVSG 85

                            90       100       110       120
                    ....*....|....*....|....*....|....*....|....
gi 47059073     178 ELDVPIQSIFTRDL----ASVARLRVAKGDVNDNFQGVLQNVRF 217
Cdd:smart00282   86 ESPGGLTILNLDGPlylgGLPEDLKLPPLPVTPGFRGCIRNLKV 129
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 497-550 2.67e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 41.87  E-value: 2.67e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 47059073   497 GPWSPWDICSVTCGGGVQRRSRlcnnPTPQFGgkdCVGDVTENqvCNKQDCPID 550
Cdd:PTZ00441  241 GPWDEWTPCSVTCGKGTHSRSR----PILHEG---CTTHMVEE--CEEEECPVE 285
Amnionless pfam14828
Amnionless; The amnionless protein forms a complex with cubilin. This complex is necessary for ...
 325-373 2.69e-03

Amnionless; The amnionless protein forms a complex with cubilin. This complex is necessary for vitamin B12 uptake.


Pssm-ID: 464340  Cd Length: 449  Bit Score: 41.61  E-value: 2.69e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 47059073    325 QYKNNEEWTVDS-----CTECHCQNSVT---ICKKVS--CPIMPCSNATVPDGECCPRC 373
Cdd:pfam14828  177 QFHGAGALRVGPeacsdPSGCGCGNDENlerICANVLqrCPPPHCLSPLRPEGHCCDVC 235
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 385-429 2.72e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 41.87  E-value: 2.72e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 47059073   385 PWSEWTSCSATCGNGIQQRGRscDSLNNRCegSSVQTRTCHIQEC 429
Cdd:PTZ00441  242 PWDEWTPCSVTCGKGTHSRSR--PILHEGC--TTHMVEECEEEEC 282
VWC_out smart00215
von Willebrand factor (vWF) type C domain;
319-386 3.85e-03

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214565  Cd Length: 67  Bit Score: 37.16  E-value: 3.85e-03
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 47059073     319 CFHNGVQYKNNEEWtVDSCTECHCQNSVTICKKVSCPIMPCSNATVpDGECCPRCWPSDSADDGWSPW 386
Cdd:smart00215    1 CWNNGSYYPPGAKW-DDDCNRCTCLNGRVSCTKVWCGPKPCLLHNL-SGECPLGQGCVPSLSDCLSSP 66
LamG cd00110
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have ...
 124-217 8.18e-03

Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.


Pssm-ID: 238058 [Multi-domain]  Cd Length: 151  Bit Score: 38.17  E-value: 8.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059073  124 KAGTLDLSLSLPGKQQVVSVEEaLLATGQWKSITLFVQEDRAQLYIDCDKMESAELDVPIQSIFTRDL----ASVARLRV 199
Cdd:cd00110   54 EDGRLVLRYDLGSGSLVLSSKT-PLNDGQWHSVSVERNGRSVTLSVDGERVVESGSPGGSALLNLDGPlylgGLPEDLKS 132

                         90
                 ....*....|....*...
gi 47059073  200 AKGDVNDNFQGVLQNVRF 217
Cdd:cd00110  133 PGLPVSPGFVGCIRDLKV 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH