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Conserved domains on  [gi|125347372|ref|NP_035081|]
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G-protein coupled receptor 143 [Mus musculus]

Protein Classification

Ocular_alb domain-containing protein( domain architecture ID 10489293)

Ocular_alb domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ocular_alb pfam02101
Ocular albinism type 1 protein;
1-396 0e+00

Ocular albinism type 1 protein;


:

Pssm-ID: 460446  Cd Length: 402  Bit Score: 741.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372    1 MASPRLGIFCCPTWDAATQLVLSFQPRVFHALCLGSGTLRLVLGLLQLLSGRRSVGHR----APATSPAASVHILRAATA 76
Cdd:pfam02101   1 MASPRLETFCCPTRDAATQLVLSFQPRAFHALCLGSGALRLLLGLLQLLPKRRHAGPRrlgqYPATSPAASVRILRAATA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372   77 CDLLGCLGIVIRSTVWIAYPEFIENISNVNATDIWPATFCVGSAMWIQLLYSACFWWLFCYAVDVYLVIRRSAGRSTILL 156
Cdd:pfam02101  81 CDLLGCLGIVIRSTVWLGFPDFIENISLVNGTDIWPAAFCVGSAMWIQLLYSACFWWLFCYAVDAYLVIRRSAGLSTILL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372  157 YHIMAWGLAVLLCVEGAVMLYYPSVSRCERGLDHAIPHYVTTYLPLLLVLVANPILFHKTVTSVASLLKGRKGVYTENER 236
Cdd:pfam02101 161 YHMMTWGLALLLCVEGVAMLYYPSVSRCERGLEHAIPHYVTTYLPLLLVLVANPILFRKTVTAVASLLKGRQGIYTENER 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372  237 LMGAVIKTRFFKIMLVLIACWLSNIINESLLFYLEMQPDIHGGSLKRIQNAARTTWFIMGILNPAQGLLLSLAFYGWTGC 316
Cdd:pfam02101 241 RMGAVIKIRFFKIMLVFIICWLSNIINESLLFYLEMQPDINGSSLKDVRNAALITWFIMGILNPAQGFLLSLAFYGWTGC 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372  317 SLDVHPPKMVIQWETMTASAAEGTYQTPVRSCVPHQNP--RKVVCVGGHTSDEVLSILSEDSDASTVEIHTATGSCNIKE 394
Cdd:pfam02101 321 SLDLSFPSKEIQWESLSTSAAEGAHPSPVGSLLPYESPaaKKTSPGGGHTSDEALSILSEGSDASTIEIHIASGSRNLNE 400

                  ..
gi 125347372  395 VD 396
Cdd:pfam02101 401 VD 402
 
Name Accession Description Interval E-value
Ocular_alb pfam02101
Ocular albinism type 1 protein;
1-396 0e+00

Ocular albinism type 1 protein;


Pssm-ID: 460446  Cd Length: 402  Bit Score: 741.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372    1 MASPRLGIFCCPTWDAATQLVLSFQPRVFHALCLGSGTLRLVLGLLQLLSGRRSVGHR----APATSPAASVHILRAATA 76
Cdd:pfam02101   1 MASPRLETFCCPTRDAATQLVLSFQPRAFHALCLGSGALRLLLGLLQLLPKRRHAGPRrlgqYPATSPAASVRILRAATA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372   77 CDLLGCLGIVIRSTVWIAYPEFIENISNVNATDIWPATFCVGSAMWIQLLYSACFWWLFCYAVDVYLVIRRSAGRSTILL 156
Cdd:pfam02101  81 CDLLGCLGIVIRSTVWLGFPDFIENISLVNGTDIWPAAFCVGSAMWIQLLYSACFWWLFCYAVDAYLVIRRSAGLSTILL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372  157 YHIMAWGLAVLLCVEGAVMLYYPSVSRCERGLDHAIPHYVTTYLPLLLVLVANPILFHKTVTSVASLLKGRKGVYTENER 236
Cdd:pfam02101 161 YHMMTWGLALLLCVEGVAMLYYPSVSRCERGLEHAIPHYVTTYLPLLLVLVANPILFRKTVTAVASLLKGRQGIYTENER 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372  237 LMGAVIKTRFFKIMLVLIACWLSNIINESLLFYLEMQPDIHGGSLKRIQNAARTTWFIMGILNPAQGLLLSLAFYGWTGC 316
Cdd:pfam02101 241 RMGAVIKIRFFKIMLVFIICWLSNIINESLLFYLEMQPDINGSSLKDVRNAALITWFIMGILNPAQGFLLSLAFYGWTGC 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372  317 SLDVHPPKMVIQWETMTASAAEGTYQTPVRSCVPHQNP--RKVVCVGGHTSDEVLSILSEDSDASTVEIHTATGSCNIKE 394
Cdd:pfam02101 321 SLDLSFPSKEIQWESLSTSAAEGAHPSPVGSLLPYESPaaKKTSPGGGHTSDEALSILSEGSDASTIEIHIASGSRNLNE 400

                  ..
gi 125347372  395 VD 396
Cdd:pfam02101 401 VD 402
7tm_classB cd13952
class B family of seven-transmembrane G protein-coupled receptors; The class B of ...
101-310 4.82e-10

class B family of seven-transmembrane G protein-coupled receptors; The class B of seven-transmembrane GPCRs is classified into three major subfamilies: subfamily B1 (secretin-like receptor family), B2 (adhesion family), and B3 (Methuselah-like family). The class B receptors have been identified in all the vertebrates, from fishes to mammals, as well as invertebrates including Caenorhabditis elegans and Drosophila melanogaster, but are not present in plants, fungi or prokaryotes. The B1 subfamily comprises receptors for polypeptide hormones of 27-141 amino-acid residues such as secretin, glucagon, glucagon-like peptide (GLP), calcitonin gene-related peptide, parathyroid hormone (PTH), and corticotropin-releasing factor. These receptors contain the large N-terminal extracellular domain (ECD), which plays a critical role in hormone recognition by binding to the C-terminal portion of the peptide. On the other hand, the N-terminal segment of the hormone induces receptor activation by interacting with the receptor transmembrane domains and connecting extracellular loops, triggering intracellular signaling pathways. All members of the subfamily B1 receptors preferentially couple to G proteins of G(s) family, which positively stimulate adenylate cyclase, leading to increased intracellular cAMP formation and calcium influx. The subfamily B2 consists of cell-adhesion receptors with 33 members in humans and vertebrates. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing a variety of structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, linked to a class B seven-transmembrane domain. These include, for example, EGF (epidermal growth factor)-like domains in CD97, Celsr1 (cadherin family member), Celsr2, Celsr3, EMR1 (EGF-module-containing mucin-like hormone receptor-like 1), EMR2, EMR3, and Flamingo; two laminin A G-type repeats and nine cadherin domains in Flamingo and its human orthologs Celsr1, Celsr2 and Celsr3; olfactomedin-like domains in the latrotoxin receptors; and five or four thrombospondin type 1 repeats in BAI1 (brain-specific angiogenesis inhibitor 1), BAI2 and BAI3. Almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. Furthermore, the subfamily B3 includes Methuselah (Mth) protein, which was originally identified in Drosophila as a GPCR affecting stress resistance and aging, and its closely related proteins.


Pssm-ID: 410627 [Multi-domain]  Cd Length: 260  Bit Score: 59.53  E-value: 4.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372 101 NISNVNATDIWPATFCVGSAMWIQLLYSACFWWLFCYAVDVYLVIRRSAG---RSTILLYHIMAWGLAVLLCVEGAVMLY 177
Cdd:cd13952   54 FLIGQLLTSSDRPVLCKALAILLHYFLLASFFWMLVEAFDLYRTFVKVFGsseRRRFLKYSLYGWGLPLLIVIITAIVDF 133
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372 178 YPSVSRCERG-----LDHAIPHYVTTYLPLLLVLVANPILFhktVTSVASLLKGRKGVYTENERLMGAVIKTRFFKIMLV 252
Cdd:cd13952  134 SLYGPSPGYGgeycwLSNGNALLWAFYGPVLLILLVNLVFF---ILTVRILLRKLRETPKQSERKSDRKQLRAYLKLFPL 210
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 125347372 253 LIACWLSNIINEsllfylemqpdihggslkrIQNAARTTWFIMGILNPAQGLLLSLAF 310
Cdd:cd13952  211 MGLTWIFGILAP-------------------FVGGSLVFWYLFDILNSLQGFFIFLIF 249
 
Name Accession Description Interval E-value
Ocular_alb pfam02101
Ocular albinism type 1 protein;
1-396 0e+00

Ocular albinism type 1 protein;


Pssm-ID: 460446  Cd Length: 402  Bit Score: 741.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372    1 MASPRLGIFCCPTWDAATQLVLSFQPRVFHALCLGSGTLRLVLGLLQLLSGRRSVGHR----APATSPAASVHILRAATA 76
Cdd:pfam02101   1 MASPRLETFCCPTRDAATQLVLSFQPRAFHALCLGSGALRLLLGLLQLLPKRRHAGPRrlgqYPATSPAASVRILRAATA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372   77 CDLLGCLGIVIRSTVWIAYPEFIENISNVNATDIWPATFCVGSAMWIQLLYSACFWWLFCYAVDVYLVIRRSAGRSTILL 156
Cdd:pfam02101  81 CDLLGCLGIVIRSTVWLGFPDFIENISLVNGTDIWPAAFCVGSAMWIQLLYSACFWWLFCYAVDAYLVIRRSAGLSTILL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372  157 YHIMAWGLAVLLCVEGAVMLYYPSVSRCERGLDHAIPHYVTTYLPLLLVLVANPILFHKTVTSVASLLKGRKGVYTENER 236
Cdd:pfam02101 161 YHMMTWGLALLLCVEGVAMLYYPSVSRCERGLEHAIPHYVTTYLPLLLVLVANPILFRKTVTAVASLLKGRQGIYTENER 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372  237 LMGAVIKTRFFKIMLVLIACWLSNIINESLLFYLEMQPDIHGGSLKRIQNAARTTWFIMGILNPAQGLLLSLAFYGWTGC 316
Cdd:pfam02101 241 RMGAVIKIRFFKIMLVFIICWLSNIINESLLFYLEMQPDINGSSLKDVRNAALITWFIMGILNPAQGFLLSLAFYGWTGC 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372  317 SLDVHPPKMVIQWETMTASAAEGTYQTPVRSCVPHQNP--RKVVCVGGHTSDEVLSILSEDSDASTVEIHTATGSCNIKE 394
Cdd:pfam02101 321 SLDLSFPSKEIQWESLSTSAAEGAHPSPVGSLLPYESPaaKKTSPGGGHTSDEALSILSEGSDASTIEIHIASGSRNLNE 400

                  ..
gi 125347372  395 VD 396
Cdd:pfam02101 401 VD 402
7tm_classB cd13952
class B family of seven-transmembrane G protein-coupled receptors; The class B of ...
101-310 4.82e-10

class B family of seven-transmembrane G protein-coupled receptors; The class B of seven-transmembrane GPCRs is classified into three major subfamilies: subfamily B1 (secretin-like receptor family), B2 (adhesion family), and B3 (Methuselah-like family). The class B receptors have been identified in all the vertebrates, from fishes to mammals, as well as invertebrates including Caenorhabditis elegans and Drosophila melanogaster, but are not present in plants, fungi or prokaryotes. The B1 subfamily comprises receptors for polypeptide hormones of 27-141 amino-acid residues such as secretin, glucagon, glucagon-like peptide (GLP), calcitonin gene-related peptide, parathyroid hormone (PTH), and corticotropin-releasing factor. These receptors contain the large N-terminal extracellular domain (ECD), which plays a critical role in hormone recognition by binding to the C-terminal portion of the peptide. On the other hand, the N-terminal segment of the hormone induces receptor activation by interacting with the receptor transmembrane domains and connecting extracellular loops, triggering intracellular signaling pathways. All members of the subfamily B1 receptors preferentially couple to G proteins of G(s) family, which positively stimulate adenylate cyclase, leading to increased intracellular cAMP formation and calcium influx. The subfamily B2 consists of cell-adhesion receptors with 33 members in humans and vertebrates. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing a variety of structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, linked to a class B seven-transmembrane domain. These include, for example, EGF (epidermal growth factor)-like domains in CD97, Celsr1 (cadherin family member), Celsr2, Celsr3, EMR1 (EGF-module-containing mucin-like hormone receptor-like 1), EMR2, EMR3, and Flamingo; two laminin A G-type repeats and nine cadherin domains in Flamingo and its human orthologs Celsr1, Celsr2 and Celsr3; olfactomedin-like domains in the latrotoxin receptors; and five or four thrombospondin type 1 repeats in BAI1 (brain-specific angiogenesis inhibitor 1), BAI2 and BAI3. Almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. Furthermore, the subfamily B3 includes Methuselah (Mth) protein, which was originally identified in Drosophila as a GPCR affecting stress resistance and aging, and its closely related proteins.


Pssm-ID: 410627 [Multi-domain]  Cd Length: 260  Bit Score: 59.53  E-value: 4.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372 101 NISNVNATDIWPATFCVGSAMWIQLLYSACFWWLFCYAVDVYLVIRRSAG---RSTILLYHIMAWGLAVLLCVEGAVMLY 177
Cdd:cd13952   54 FLIGQLLTSSDRPVLCKALAILLHYFLLASFFWMLVEAFDLYRTFVKVFGsseRRRFLKYSLYGWGLPLLIVIITAIVDF 133
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372 178 YPSVSRCERG-----LDHAIPHYVTTYLPLLLVLVANPILFhktVTSVASLLKGRKGVYTENERLMGAVIKTRFFKIMLV 252
Cdd:cd13952  134 SLYGPSPGYGgeycwLSNGNALLWAFYGPVLLILLVNLVFF---ILTVRILLRKLRETPKQSERKSDRKQLRAYLKLFPL 210
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 125347372 253 LIACWLSNIINEsllfylemqpdihggslkrIQNAARTTWFIMGILNPAQGLLLSLAF 310
Cdd:cd13952  211 MGLTWIFGILAP-------------------FVGGSLVFWYLFDILNSLQGFFIFLIF 249
7tmB3_Methuselah-like cd15039
Methuselah-like subfamily B3, member of the class B family of seven-transmembrane G ...
111-310 3.78e-07

Methuselah-like subfamily B3, member of the class B family of seven-transmembrane G protein-coupled receptors; The subfamily B3 of class B GPCRs consists of Methuselah (Mth) and its closely related proteins found in bilateria. Mth was originally identified in Drosophila as a GPCR affecting stress resistance and aging. In addition to the seven transmembrane helices, Mth contains an N-terminal extracellular domain involved in ligand binding, and a third intracellular loop (IC3) required for the specificity of G-protein coupling. Drosophila Mth mutants showed an increase in average lifespan by 35% and greater resistance to a variety of stress factors, including starvation, high temperature, and paraquat-induced oxidative toxicity. Moreover, mutations in two endogenous peptide ligands of Methuselah, Stunted A and B, showed an increased in lifespan and resistance to oxidative stress induced by dietary paraquat. These results strongly suggest that the Stunted-Methuselah system plays important roles in stress response and aging.


Pssm-ID: 410632 [Multi-domain]  Cd Length: 270  Bit Score: 51.07  E-value: 3.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372 111 WPATFCVGSAMWIQLLYSACFWWLFCYAVDVYLVIRRSAG-------RSTILLYHIMAWGLAVLLCVEGAVMLYYPSVS- 182
Cdd:cd15039   63 GDSTLCVALGILLHFFFLAAFFWLNVMSFDIWRTFRGKRSsssrskeRKRFLRYSLYAWGVPLLLVAVTIIVDFSPNTDs 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372 183 --------RCerGLDHAIPHYVTTYLPLLLVLVANPILFHKTVTSVASLLKGRKGVYTENERLmgaviKTRF---FKIML 251
Cdd:cd15039  143 lrpgygegSC--WISNPWALLLYFYGPVALLLLFNIILFILTAIRIRKVKKETAKVQSRLRSD-----KQRFrlyLKLFV 215
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 125347372 252 VLIACWLSNIINEsllfylemqpdihggslkrIQNAARTTWFIMGILNPAQGLLLSLAF 310
Cdd:cd15039  216 IMGVTWILEIISW-------------------FVGGSSVLWYIFDILNGLQGVFIFLIF 255
7tmE_cAMP_R_Slime_mold cd14940
slime mold cyclic AMP receptor, member of the class E family of seven-transmembrane G ...
116-310 8.66e-07

slime mold cyclic AMP receptor, member of the class E family of seven-transmembrane G protein-coupled receptors; This family represents the class E of seven-transmembrane G-protein coupled receptors found in soil-living amoebas, commonly referred to as slime molds. The class E family includes cAMP receptors (cAR1-4) and cAMP receptors-like proteins (CrlA-C) from Dictyostelium discoideum, and their highly homologous cAMP receptors (TasA and TasB) from Polysphondylium pallidum. So far, four subtypes of cAMP receptors (cAR1-4) have been identified that play an essential role in the detection and transmit of the periodic extracellular cAMP waves that regulate chemotactic cell movement during Dictyostelium development, from the unicellular amoeba aggregate into many multicellular slugs and then differentiate into a sporocarp, a fruiting body with cells specialized for different functions. These four subtypes differ in their expression levels and patterns during development. cAR1 is high-affinity receptor that is the first one to be expressed highly during early aggregation and continues to be expressed at low levels during later developmental stages. cAR1 detects extracellular cAMP and is coupled to G-alpha2 protein. Cells lacking cAR1 fail to aggregate, demonstrating that cAR1 is responsible for aggregation. During later aggregation the high-affinity cAR3 receptor is expressed at low levels. Nonetheless, cells lacking cAR3 do not show an obviously altered pattern of development and are still able to aggregate into fruiting bodies. In contrast, cAR2 and cAR4 are low affinity receptors expressed predominantly after aggregation in pre-stalk cells. cAR2 is essential for normal tip formation and deletion of the receptor arrests development at the mound stage. On the other hand, CAR4 regulates axial patterning and cellular differentiation, and deletion of the receptor results in defects during culmination. Furthermore, three cAMP receptor-like proteins (CrlA-C) were identified in Dictyostelium that show limited sequence similarity to the cAMP receptors. Of these CrlA is thought to be required for normal cell growth and tip formation in developing aggregates.


Pssm-ID: 320094 [Multi-domain]  Cd Length: 256  Bit Score: 50.04  E-value: 8.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372 116 CVGSAMWIQLLYSACFWWLFCYAVDVYLVIRRSAGRSTIL--LYHIMAWGLAVLLCVegaVML----YYPSVSRCERGLD 189
Cdd:cd14940   68 CYLYAIVITYGSLSCWLWTLCLAISIYLLIVKREPEPEKFekYYHFVCWGLPLISTI---IMLikhhYGPVGNWCWIGNQ 144
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372 190 HAIPHYVTTYLPLLLVLVANPILFhkTVTSVASLLKGRKGVYTENERLMGAVIKTRFFKImlVLIACWLSNIINesllfy 269
Cdd:cd14940  145 YTGYRFGLFYGPFFIIFGISAVLV--GLTSHYTYQVIHNWVSDNKDLHKTYQFKLVNYII--VFLLCWIFAVIN------ 214
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 125347372 270 lemqpdihggslkRIQNAARTTWFIMGIL----NPAQGLLLSLAF 310
Cdd:cd14940  215 -------------RIQNALNPFPFALNLLhtylSPSHGFYASVVF 246
7tmB2_GPR133-like_Adhesion_V cd15933
orphan GPR133 and related proteins, group V adhesion GPCRs, member of class B2 family of ...
114-209 4.61e-04

orphan GPR133 and related proteins, group V adhesion GPCRs, member of class B2 family of seven-transmembrane G protein-coupled receptors; group V adhesion GPCRs include orphan receptors GPR133, GPR144, and closely related proteins. The function of GPR144 has not yet been characterized, whereas GPR133 is highly expressed in the pituitary gland and is coupled to the G(s) protein, leading to activation of adenylate cyclase pathway. Moreover, genetic variations in the GPR133 have been reported to be associated with adult height and heart rate. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in ligand recognition as well as cell-cell adhesion and cell-matrix interactions, linked by a stalk region to a class B seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. However, several adhesion GPCRs, including GPR 111, GPR115, and CELSR1, are predicted to be non-cleavable at the GAIN domain because of the lack of a consensus catalytic triad sequence (His-Leu-Ser/Thr) within their GPS.


Pssm-ID: 320599 [Multi-domain]  Cd Length: 252  Bit Score: 41.54  E-value: 4.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372 114 TFCVGSAMWIQLLYSACFWWLFCYAVDVYL-VIRRSAGRSTILLYHIMAWGLAVLLCV--EGAVMLYYPSVSRCERGL-D 189
Cdd:cd15933   65 VACKVVAILLHFFFMAAFSWMLVEGLHLYLmIVKVFNYKSKMRYYYFIGWGLPAIIVAisLAILFDDYGSPNVCWLSLdD 144
                         90       100
                 ....*....|....*....|
gi 125347372 190 HAIPHYVTtylPLLLVLVAN 209
Cdd:cd15933  145 GLIWAFVG---PVIFIITVN 161
7tmB2_Adhesion cd15040
adhesion receptors, subfamily B2 of the class B family of seven-transmembrane G ...
98-213 1.14e-03

adhesion receptors, subfamily B2 of the class B family of seven-transmembrane G protein-coupled receptors; The B2 subfamily of class B GPCRs consists of cell-adhesion receptors with 33 members in humans and vertebrates. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing a variety of structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, linked to a class B seven-transmembrane domain. These include, for example, EGF (epidermal growth factor)-like domains in CD97, Celsr1 (cadherin family member), Celsr2, Celsr3, EMR1 (EGF-module-containing mucin-like hormone receptor-like 1), EMR2, EMR3, and Flamingo; two laminin A G-type repeats and nine cadherin domains in Flamingo and its human orthologs Celsr1, Celsr2 and Celsr3; olfactomedin-like domains in the latrotoxin receptors; and five or four thrombospondin type 1 repeats in BAI1 (brain-specific angiogenesis inhibitor 1), BAI2 and BAI3. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320168 [Multi-domain]  Cd Length: 253  Bit Score: 40.25  E-value: 1.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372  98 FIENISN-VNATDIWPATFCVGSAMWIQLLYSACFWWLFCYAVDVYLVIRRSAGRST---ILLYHIMAWGLAVLLCVEGA 173
Cdd:cd15040   49 LLANLLFlFGINSTDNPVLCTAVAALLHYFLLASFMWMLVEALLLYLRLVKVFGTYPrhfILKYALIGWGLPLIIVIITL 128
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 125347372 174 VM---LYYPSVSRCerGLDHAIPHYVTTYLPLLLVLVANPILF 213
Cdd:cd15040  129 AVdpdSYGNSSGYC--WLSNGNGLYYAFLGPVLLIILVNLVIF 169
7tm_2 pfam00002
7 transmembrane receptor (Secretin family); This family is known as Family B, the ...
82-217 4.34e-03

7 transmembrane receptor (Secretin family); This family is known as Family B, the secretin-receptor family or family 2 of the G-protein-coupled receptors (GCPRs). They have been described in many animal species, but not in plants, fungi or prokaryotes. Three distinct sub-families are recognized. Subfamily B1 contains classical hormone receptors, such as receptors for secretin and glucagon, that are all involved in cAMP-mediated signalling pathways. Subfamily B2 contains receptors with long extracellular N-termini, such as the leukocyte cell-surface antigen CD97; calcium-independent receptors for latrotoxin, and brain-specific angiogenesis inhibitors amongst others. Subfamily B3 includes Methuselah and other Drosophila proteins. Other than the typical seven-transmembrane region, characteriztic structural features include an amino-terminal extracellular domain involved in ligand binding, and an intracellular loop (IC3) required for specific G-protein coupling.


Pssm-ID: 459625 [Multi-domain]  Cd Length: 248  Bit Score: 38.41  E-value: 4.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372   82 CLGIVIRSTVWIAYpefIENISNVNATDIWPATFCVGSAMWIQLLYSACFWWLFCYAVDVY--LVIRRSAGRSTILLYHI 159
Cdd:pfam00002  44 FASFILRALLFLVG---DAVLFNKQDLDHCSWVGCKVVAVFLHYFFLANFFWMLVEGLYLYtlLVEVFFSERKYFWWYLL 120
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 125347372  160 MAWGL-AVLLCVEGAVML-YYPSVSRCERGLDHAIphYVTTYLPLLLVLVANPILFHKTV 217
Cdd:pfam00002 121 IGWGVpALVVGIWAGVDPkGYGEDDGCWLSNENGL--WWIIRGPILLIILVNFIIFINIV 178
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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