|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
65-373 |
4.20e-124 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 362.32 E-value: 4.20e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 65 SERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAK---EPTKLADVYQAELRELRLRLDQLTANSARLEVERDNF 141
Cdd:pfam00038 1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKkgaEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 142 AQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEM 221
Cdd:pfam00038 81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVEM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 222 DVA-KPDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQLQALTCDLESLRGTN 300
Cdd:pfam00038 161 DAArKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQK 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 84000448 301 ESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENR 373
Cdd:pfam00038 241 ASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
82-372 |
4.21e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 4.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 82 EKVRFLEQQNKALAAELNQLRAKEPTKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQDETNLRLE 161
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 162 AENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDVAKPDLTAALREIRTQYEA 241
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 242 VATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQLQaltcdLESLRGTNESLERQMREQEERHARESASY 321
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER-----LEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 84000448 322 QEALARLEEEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEEN 372
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-375 |
2.97e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 2.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 53 GALNAGFKETRAS---ERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKladvyQAELRELRLRLDQLTA 129
Cdd:TIGR02168 659 GVITGGSAKTNSSileRRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL-----RKELEELSRQISALRK 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 130 NSARLEVERDNFAQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIY---EEEVR 206
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALdelRAELT 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 207 ELREQLAQQQVHVEMDVAKPDLTAALREIRTQyeavATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQL 286
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEE----QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 287 QALTCDLESLRGTNESLERQMRE--QEERHARES-ASYQEALARLEEEGQSLKEEMArhlQEYQDLLNVKLALDIEIATY 363
Cdd:TIGR02168 890 ALLRSELEELSEELRELESKRSElrRELEELREKlAQLELRLEGLEVRIDNLQERLS---EEYSLTLEEAEALENKIEDD 966
|
330
....*....|..
gi 84000448 364 RKLLEGEENRIT 375
Cdd:TIGR02168 967 EEEARRRLKRLE 978
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
113-374 |
3.62e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 3.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 113 YQAELRELR-----LRLDQLTANSARLEVERDNFAQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKV 187
Cdd:COG1196 218 LKEELKELEaelllLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 188 ESLEEEIQFL---RKIYEEEVRELREQLAQQQVHVEmdvakpDLTAALREIRTQyEAVATSNMQETEEWYRSKFADLTDA 264
Cdd:COG1196 298 ARLEQDIARLeerRRELEERLEELEEELAELEEELE------ELEEELEELEEE-LEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 265 ASRNAELLRQAKHEANDYRRQLQALTcDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQ 344
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAA-ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270
....*....|....*....|....*....|
gi 84000448 345 EYQDLLNVKLALDIEIATYRKLLEGEENRI 374
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAAL 479
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
65-311 |
4.43e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 4.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 65 SERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAK--EPTKLADVYQAEL--------------RELRLRLDQLT 128
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEvsELEEEIEELQKELyalaneisrleqqkQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 129 ANSARLEVERDNFAQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKiyeeEVREL 208
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS----KVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 209 REQLAQQQVHVE-MDVAKPDLTAAL----REIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAEL---LRQAKHEAN 280
Cdd:TIGR02168 392 ELQIASLNNEIErLEARLERLEDRRerlqQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLeeaLEELREELE 471
|
250 260 270
....*....|....*....|....*....|.
gi 84000448 281 DYRRQLQALTCDLESLRGTNESLERQMREQE 311
Cdd:TIGR02168 472 EAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
60-335 |
1.86e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 1.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 60 KETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKLADVYQA---------ELRELRLRLDQLTAN 130
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELlaelarleqDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 131 SARLEVERDNFAQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELRE 210
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 211 QLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQLQALT 290
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 84000448 291 cDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSL 335
Cdd:COG1196 478 -ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
83-372 |
7.03e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 7.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 83 KVRFLEQQNKAlAAELNQLRAKEPTKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQDETNLRLEA 162
Cdd:TIGR02168 201 QLKSLERQAEK-AERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 163 ENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYeEEVRELREQLAQQQVHVEMDVAkpDLTAALREIRTQYEAV 242
Cdd:TIGR02168 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQL-EELEAQLEELESKLDELAEELA--ELEEKLEELKEELESL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 243 ------ATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEAND---YRRQLQALTCDLESLRGTNESLERQMREQE-- 311
Cdd:TIGR02168 357 eaeleeLEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEierLEARLERLEDRRERLQQEIEELLKKLEEAElk 436
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 84000448 312 ------ERHARESASYQEALARLEEEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEEN 372
Cdd:TIGR02168 437 elqaelEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
114-341 |
8.09e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 8.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 114 QAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEatlarvdLERKVESLEEE 193
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE-------LEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 194 IQFLRKIYEEEVRELreQLAQQQVHVEMDVAKPDLTAALReiRTQYEAVATSNMQETEEWYRSKFADLTdaasRNAELLR 273
Cdd:COG4942 99 LEAQKEELAELLRAL--YRLGRQPPLALLLSPEDFLDAVR--RLQYLKYLAPARREQAEELRADLAELA----ALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 84000448 274 QAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMAR 341
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| Filament_head |
pfam04732 |
Intermediate filament head (DNA binding) region; This family represents the N-terminal head ... |
4-63 |
3.00e-07 |
|
Intermediate filament head (DNA binding) region; This family represents the N-terminal head region of intermediate filaments. Intermediate filament heads bind DNA. Vimentin heads are able to alter nuclear architecture and chromatin distribution, and the liberation of heads by HIV-1 protease liberates may play an important role in HIV-1 associated cytopathogenesis and carcinogenesis. Phosphorylation of the head region can affect filament stability. The head has been shown to interaction with the rod domain of the same protein.
Pssm-ID: 461414 [Multi-domain] Cd Length: 83 Bit Score: 47.77 E-value: 3.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 4 RRITSARRSYA-SETVVRGLGPSRQLGTM------------PRFSLSRMTPPLPAR---------VDFSLAGALNAGFKE 61
Cdd:pfam04732 1 YSSSSYRRMFGdSSSSRPSYSSSSGSRSVssrsysrsssssPSSSSRRSSRSSSRSsypslaadsLDFSLADALNQEFKA 80
|
..
gi 84000448 62 TR 63
Cdd:pfam04732 81 TR 82
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
137-365 |
1.28e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 137 ERDNFAQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRK---IYEEEVRELREQLA 213
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAelaELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 214 QQQvhvemDVAKPDLTAALREIRTQYEAVATSNmqeteewyrSKFADLTDAASRNAELLRQAKHEANDYRRQLQALTCDL 293
Cdd:COG4942 101 AQK-----EELAELLRALYRLGRQPPLALLLSP---------EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 84000448 294 ESLRGTNESLERQMREQEERHAR---ESASYQEALARLEEEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRK 365
Cdd:COG4942 167 AELEAERAELEALLAELEEERAAleaLKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
60-341 |
2.67e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 60 KETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKLADVYQAELRELRLRLDQLTANSARLEVERD 139
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE 829
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 140 nfaqdlgTLRQKLQDETNLRLEAENNLAAYRQEADEatlarvdLERKVESLEEEIqflrKIYEEEVRELREQLAQQQVHV 219
Cdd:TIGR02169 830 -------YLEKEIQELQEQRIDLKEQIKSIEKEIEN-------LNGKKEELEEEL----EELEAALRDLESRLGDLKKER 891
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 220 EmdvakpDLTAALREIRTQYEAVATSnMQETEEWYRSKFADLTDAASRNAELLRQAKHE---------ANDYRRQLQALT 290
Cdd:TIGR02169 892 D------ELEAQLRELERKIEELEAQ-IEKKRKRLSELKAKLEALEEELSEIEDPKGEDeeipeeelsLEDVQAELQRVE 964
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 84000448 291 CDLESLRGTNESLERQMREQEERHAresaSYQEALARLEEEGQSLKEEMAR 341
Cdd:TIGR02169 965 EEIRALEPVNMLAIQEYEEVLKRLD----ELKEKRAKLEEERKAILERIEE 1011
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
113-368 |
6.07e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 6.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 113 YQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEE 192
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 193 EIQFLR---KIYEEEVRELREQLAQQQVHVEmDVAKPDLTAALREIRTQYEAVatsnmqeteEWYRSKFADLTDAASRNA 269
Cdd:TIGR02169 752 EIENVKselKELEARIEELEEDLHKLEEALN-DLEARLSHSRIPEIQAELSKL---------EEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 270 ELLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEYQDL 349
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
|
250
....*....|....*....
gi 84000448 350 LNVKLALDIEIATYRKLLE 368
Cdd:TIGR02169 902 ERKIEELEAQIEKKRKRLS 920
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
59-264 |
1.64e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 59 FKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQL--RAKEPTKLADVYQAELRELRLRLDQLTANSARLEV 136
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLeeQIEELSEDIESLAAEIEELEELIEELESELEALLN 880
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 137 ERDNFAQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQ 216
Cdd:TIGR02168 881 ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALE 960
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 84000448 217 VHVEMDVAKpdLTAALREIRTQYEAVATSNM------QETEEWYR---SKFADLTDA 264
Cdd:TIGR02168 961 NKIEDDEEE--ARRRLKRLENKIKELGPVNLaaieeyEELKERYDfltAQKEDLTEA 1015
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
51-215 |
1.80e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 51 LAGALNAGFKETRASE-RAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRA---KEPTKLADVYQAELRELRLRLDQ 126
Cdd:COG4913 277 LRAALRLWFAQRRLELlEAELEELRAELARLEAELERLEARLDALREELDELEAqirGNGGDRLEQLEREIERLERELEE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 127 LTANSAR-------LEVERDNFAQDLGTLRQKLQDetnLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRK 199
Cdd:COG4913 357 RERRRARleallaaLGLPLPASAEEFAALRAEAAA---LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
170
....*....|....*....
gi 84000448 200 ---IYEEEVRELREQLAQQ 215
Cdd:COG4913 434 rksNIPARLLALRDALAEA 452
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
67-305 |
3.22e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 3.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 67 RAEMMELNDRFASY--IEKVRFLEQQNKALAAELNQLRAKeptkLADVYQA--ELRELRLRLDQLTANSARLEVERDNFA 142
Cdd:COG4913 637 EAELDALQERREALqrLAEYSWDEIDVASAEREIAELEAE----LERLDASsdDLAALEEQLEELEAELEELEEELDELK 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 143 QDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVE-- 220
Cdd:COG4913 713 GEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELEra 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 221 ---------MDVAKPDLT-AALREIRTQYEAVATSNMQEteewYRSKFADLTDAASRN--AELLRQAKHEANDYRRQLQA 288
Cdd:COG4913 793 mrafnrewpAETADLDADlESLPEYLALLDRLEEDGLPE----YEERFKELLNENSIEfvADLLSKLRRAIREIKERIDP 868
|
250
....*....|....*..
gi 84000448 289 LtcdleslrgtNESLER 305
Cdd:COG4913 869 L----------NDSLKR 875
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
159-374 |
7.13e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 7.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 159 RLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQflrkiYEEEVRELREQLAQQQVHVemdvakpdLTAALREIRTQ 238
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNELERQLKSLERQAE-----KAERYKELKAELRELELAL--------LVLRLEELREE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 239 YEAVatsnmQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHAR-- 316
Cdd:TIGR02168 241 LEEL-----QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANle 315
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 84000448 317 -ESASYQEALARLEEEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRI 374
Cdd:TIGR02168 316 rQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
68-243 |
9.71e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 9.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 68 AEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKLADVYQAELRELRLRLDQLTANSARLEVERD-------- 139
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDeleaqirg 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 140 NFAQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAqqqvhv 219
Cdd:COG4913 335 NGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALA------ 408
|
170 180
....*....|....*....|....
gi 84000448 220 EMDVAKPDLTAALREIRTQYEAVA 243
Cdd:COG4913 409 EAEAALRDLRRELRELEAEIASLE 432
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
161-391 |
3.58e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 3.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 161 EAENNLAAYRQEADEATLARVDLERKVESLEEE----IQFLRKIYEEEVRELREQLAQ-QQVHVEMDVAKPDLTAALREI 235
Cdd:COG1196 176 EAERKLEATEENLERLEDILGELERQLEPLERQaekaERYRELKEELKELEAELLLLKlRELEAELEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 236 RTQYEAVATSNMQETEEwyRSKFADLTDAASRNAELLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHA 315
Cdd:COG1196 256 EELEAELAELEAELEEL--RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE 333
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 84000448 316 RESASYQEA---LARLEEEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETSL 391
Cdd:COG1196 334 ELEEELEELeeeLEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
170-368 |
3.73e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 170 RQEADEATLARVDLERKVESLEEEIQFLRkiyeEEVRELREQLAQQQVHVEmdvakpDLTAALREIRTQYEAVATSNMQE 249
Cdd:COG4913 273 ELEYLRAALRLWFAQRRLELLEAELEELR----AELARLEAELERLEARLD------ALREELDELEAQIRGNGGDRLEQ 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 250 teewyrskfadLTDAASRNAELLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLE 329
Cdd:COG4913 343 -----------LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE 411
|
170 180 190
....*....|....*....|....*....|....*....
gi 84000448 330 EEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLE 368
Cdd:COG4913 412 AALRDLRRELRELEAEIASLERRKSNIPARLLALRDALA 450
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
60-318 |
3.95e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 60 KETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKeptklADVYQAELRELRLRLDQLtanSARLEVERD 139
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE-----LAALEAELAELEKEIAEL---RAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 140 NFAQDLGTL-RQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERkVESLEEEIqflrkiyeEEVRELREQLAQQQVh 218
Cdd:COG4942 105 ELAELLRALyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ-AEELRADL--------AELAALRAELEAERA- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 219 vemdvakpDLTAALREIRTQYEAvatsnmqeteewyrskfadLTDAASRNAELLRQAKHEANDYRRQLQALTCDLESLRG 298
Cdd:COG4942 175 --------ELEALLAELEEERAA-------------------LEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
250 260
....*....|....*....|
gi 84000448 299 TNESLERQMREQEERHARES 318
Cdd:COG4942 228 LIARLEAEAAAAAERTPAAG 247
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
111-351 |
4.43e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 4.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 111 DVYQAELRELRLRLDQLTANSARLEVERDNfAQDLGTLRQKLQDETnlrlEAENNLAAYRQEADEATLARVDLER---KV 187
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDA-LQERREALQRLAEYS----WDEIDVASAEREIAELEAELERLDAssdDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 188 ESLEEEIQFLrkiyEEEVRELREQLAQQQvhVEMDVAKPDLTAALREIRtQYEAVATSNMQETEEWYRskfadlTDAASR 267
Cdd:COG4913 688 AALEEQLEEL----EAELEELEEELDELK--GEIGRLEKELEQAEEELD-ELQDRLEAAEDLARLELR------ALLEER 754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 268 NAELLRQAKheANDYRRQLQAltcDLESLRGTNESLERQMREQEERHARES--------------ASYQEALARLEEEGq 333
Cdd:COG4913 755 FAAALGDAV--ERELRENLEE---RIDALRARLNRAEEELERAMRAFNREWpaetadldadleslPEYLALLDRLEEDG- 828
|
250
....*....|....*...
gi 84000448 334 slkeeMARHLQEYQDLLN 351
Cdd:COG4913 829 -----LPEYEERFKELLN 841
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
58-353 |
9.47e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 9.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 58 GFKETRASERAEMMELNDRFASYIEKVR----FLEQQNKALAAELNQLRAkEPTKLADVYQAELRELRLRLDQLTANSAR 133
Cdd:pfam15921 282 GLTEKASSARSQANSIQSQLEIIQEQARnqnsMYMRQLSDLESTVSQLRS-ELREAKRMYEDKIEELEKQLVLANSELTE 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 134 LEVERDNFAQDLGTLRQKLQD--------ETNLRLEAENNLAAYrqEADEATLARVD-LERKVESLEEEIQFLRKIYEEE 204
Cdd:pfam15921 361 ARTERDQFSQESGNLDDQLQKlladlhkrEKELSLEKEQNKRLW--DRDTGNSITIDhLRRELDDRNMEVQRLEALLKAM 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 205 VRELREQLAQQQVHV----EMDVAKPDLTAALREIRTQYEAVA--------------------TSNMQETEEWYRSKFAD 260
Cdd:pfam15921 439 KSECQGQMERQMAAIqgknESLEKVSSLTAQLESTKEMLRKVVeeltakkmtlessertvsdlTASLQEKERAIEATNAE 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 261 LTDAASRNAELLRQAKHEAN--DYRRQLQAlTCDLESLRGTN-----ESLERQMREQEE---RHARESASYQEALARLEE 330
Cdd:pfam15921 519 ITKLRSRVDLKLQELQHLKNegDHLRNVQT-ECEALKLQMAEkdkviEILRQQIENMTQlvgQHGRTAGAMQVEKAQLEK 597
|
330 340
....*....|....*....|...
gi 84000448 331 EGQSLKEEmarhLQEYQDLLNVK 353
Cdd:pfam15921 598 EINDRRLE----LQEFKILKDKK 616
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
88-324 |
1.44e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 88 EQQNKALAAELNQLRAKEPTKLADVYQAE-LRELRLRLDQLTAN----SARLEVERDNFAQDLGTLRQKLQDETNLRLEA 162
Cdd:PRK02224 474 RERVEELEAELEDLEEEVEEVEERLERAEdLVEAEDRIERLEERredlEELIAERRETIEEKRERAEELRERAAELEAEA 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 163 ENNLAA---YRQEADEATLARVDLERKVESLEEEIQFLRKI---------YEEEVRELREQLAQQQvhvEMDVAKPDLTA 230
Cdd:PRK02224 554 EEKREAaaeAEEEAEEAREEVAELNSKLAELKERIESLERIrtllaaiadAEDEIERLREKREALA---ELNDERRERLA 630
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 231 ALREIRTQYEAVATSNMQETEewyRSKFADLTDAASRNAELLRQAKHEANDYRRQLQALTCDLESLrgtnESLERQMREQ 310
Cdd:PRK02224 631 EKRERKRELEAEFDEARIEEA---REDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL----EELRERREAL 703
|
250
....*....|....
gi 84000448 311 EERHARESASYQEA 324
Cdd:PRK02224 704 ENRVEALEALYDEA 717
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
108-330 |
1.62e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 108 KLADVYQAELreLRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQDetnlrLEAENNLAAYRQEADEATLARVDLERKV 187
Cdd:COG3206 156 ALAEAYLEQN--LELRREEARKALEFLEEQLPELRKELEEAEAALEE-----FRQKNGLVDLSEEAKLLLQQLSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 188 ESLEEEIQFLRKIYEEeVRELREQLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATS------NMQETeewyRSKFADL 261
Cdd:COG3206 229 AEARAELAEAEARLAA-LRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARytpnhpDVIAL----RAQIAAL 303
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 84000448 262 TDA-ASRNAELLRQAKHEANDYRRQLQALTCDLESLRGTNESL---ERQMREQEERHARESASYQEALARLEE 330
Cdd:COG3206 304 RAQlQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELpelEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
166-375 |
1.90e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 166 LAAYRQEADEATLARVDLERKVESLEEEIQflrkiyeeEVRELREQLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATS 245
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELD--------ALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 246 NMQeteewyrskfadltdaasrnaelLRQAKheandyrRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEAL 325
Cdd:COG4913 684 SDD-----------------------LAALE-------EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQ 733
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 84000448 326 ARLEEEGQSLKEEMARHLQEYQDLLN-------VKLALDIEIATYRKLLEGEENRIT 375
Cdd:COG4913 734 DRLEAAEDLARLELRALLEERFAAALgdavereLRENLEERIDALRARLNRAEEELE 790
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
131-252 |
2.43e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 131 SARLEVERDNFAQDLGTLRQKLQdetnlRLEAEnnLAAYRQEADEATLARVD-LERKVESLEEEIQFLRKIYEEEVRELR 209
Cdd:COG0542 399 AARVRMEIDSKPEELDELERRLE-----QLEIE--KEALKKEQDEASFERLAeLRDELAELEEELEALKARWEAEKELIE 471
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 84000448 210 EQLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATSNMQE-TEE 252
Cdd:COG0542 472 EIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREEvTEE 515
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
113-331 |
2.71e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 113 YQAELRELRLRLDQLT-----ANSARLEVERDNFAQDLGTLRQKLQDETNLRLeAENNLAAYRQEADEATLARVDLERKV 187
Cdd:COG4913 240 AHEALEDAREQIELLEpirelAERYAAARERLAELEYLRAALRLWFAQRRLEL-LEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 188 ESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDVAKpdltaaLREIRTQYEAVATSnMQETEEWYRSKFADLTDAASR 267
Cdd:COG4913 319 DALREELDELEAQIRGNGGDRLEQLEREIERLERELEE------RERRRARLEALLAA-LGLPLPASAEEFAALRAEAAA 391
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 84000448 268 NAELLRQAKHEANDYRRQLQAltcDLESLRGTNESLERQMREQEERHARESASYQEALARLEEE 331
Cdd:COG4913 392 LLEALEEELEALEEALAEAEA---ALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
94-214 |
3.06e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.84 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 94 LAAELNQLRAKEPTKLADVYQAELRELRLRLDQLTANSARLEVERDnfaqdlgTLRQKL--QDETNLRLEAEnnLAAYRQ 171
Cdd:COG2433 385 LIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVE-------ELEAELeeKDERIERLERE--LSEARS 455
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 84000448 172 EADEatlaRVDLERKVESLEEEIQFLRKIYEEE---VRELREQLAQ 214
Cdd:COG2433 456 EERR----EIRKDREISRLDREIERLERELEEErerIEELKRKLER 497
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
61-376 |
4.93e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.15 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 61 ETRASERAEMMELNDRFASYIEKVRFLEQQNKALAA---ELNQLRAKEPTKLADVyQAELRELRLRLDQLTANSARLEVE 137
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEalaELEEEEEEEEEALEEA-AEEEAELEEEEEALLELLAELLEE 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 138 RDNFAQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLAR-VDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQ 216
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALlLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 217 VHVEMDVAK-------------------------PDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAEL 271
Cdd:COG1196 552 VVEDDEVAAaaieylkaakagratflpldkirarAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 272 LRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEYQDLLN 351
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
330 340
....*....|....*....|....*
gi 84000448 352 VKLALDIEIATYRKLLEGEENRITI 376
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREE 736
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
183-374 |
6.08e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 38.84 E-value: 6.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 183 LERKVESLEEEIQFLrkiyEEEVRELREQLAQQQvhvemdvakpdltAALREIRTQYEAVATSNMQETeewYRSKFADLT 262
Cdd:COG3206 166 LELRREEARKALEFL----EEQLPELRKELEEAE-------------AALEEFRQKNGLVDLSEEAKL---LLQQLSELE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 263 DAASRNAELLRQAKHEANDYRRQLQALTCD---------LESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQ 333
Cdd:COG3206 226 SQLAEARAELAEAEARLAALRAQLGSGPDAlpellqspvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA 305
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 84000448 334 SLKEEMARHLQEYQdllNVKLALDIEIATYRKLLEGEENRI 374
Cdd:COG3206 306 QLQQEAQRILASLE---AELEALQAREASLQAQLAQLEARL 343
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
144-341 |
6.76e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 38.66 E-value: 6.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 144 DLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRK---IYEEEVRELREQLAQQQVHVE 220
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAeiaEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 221 MDVAKPDLTAALREIRTQYEAVATSNMQETeewYRSKFADLTDAASRNAELLRQAKHEANDYRRQLQALTCDLESLRgtn 300
Cdd:COG3883 97 RSGGSVSYLDVLLGSESFSDFLDRLSALSK---IADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK--- 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 84000448 301 ESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMAR 341
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
85-208 |
7.06e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 38.78 E-value: 7.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 85 RFLEQQNKA--LAAELNQLRAKEPTKLADV--YQAELRELRLRLDQLTANS----ARLEVERDNFAQDLGTLRQK----- 151
Cdd:COG3096 526 QRLRQQQNAerLLEEFCQRIGQQLDAAEELeeLLAELEAQLEELEEQAAEAveqrSELRQQLEQLRARIKELAARapawl 605
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 84000448 152 --------LQDETNLRLEAENNLAAYRQEAdeatlarVDLERKVESLEEEIQFLRKIYEEEVREL 208
Cdd:COG3096 606 aaqdalerLREQSGEALADSQEVTAAMQQL-------LEREREATVERDELAARKQALESQIERL 663
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
57-220 |
9.26e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 38.51 E-value: 9.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 57 AGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRA--KEPTKLADVYQAELRELRLRLDQLTANSARL 134
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDelKDYREKLEKLKREINELKRELDRLQEELQRL 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000448 135 EVERDNFAQDLGTLRQKLQDETNLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQ 214
Cdd:TIGR02169 419 SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498
|
....*.
gi 84000448 215 QQVHVE 220
Cdd:TIGR02169 499 ARASEE 504
|
|
| |
