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Conserved domains on  [gi|225543126|ref|NP_032988|]
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prostaglandin D2 receptor [Mus musculus]

Protein Classification

G protein-coupled receptor family protein( domain architecture ID 705710)

G protein-coupled receptor family protein is a seven-transmembrane G protein-coupled receptor (7TM-GPCR) family protein which typically transmits an extracellular signal into the cell by the conformational rearrangement of the 7TM helices and by the subsequent binding and activation of an intracellular heterotrimeric G protein; GPCR ligands include light-sensitive compounds, odors, pheromones, hormones, and neurotransmitters

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
7tm_GPCRs super family cl28897
seven-transmembrane G protein-coupled receptor superfamily; This hierarchical evolutionary ...
16-331 3.89e-142

seven-transmembrane G protein-coupled receptor superfamily; This hierarchical evolutionary model represents the seven-transmembrane (7TM) receptors, often referred to as G protein-coupled receptors (GPCRs), which transmit physiological signals from the outside of the cell to the inside via G proteins. GPCRs constitute the largest known superfamily of transmembrane receptors across the three kingdoms of life that respond to a wide variety of extracellular stimuli including peptides, lipids, neurotransmitters, amino acids, hormones, and sensory stimuli such as light, smell and taste. All GPCRs share a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes. However, some 7TM receptors, such as the type 1 microbial rhodopsins, do not activate G proteins. Based on sequence similarity, GPCRs can be divided into six major classes: class A (the rhodopsin-like family), class B (the Methuselah-like, adhesion and secretin-like receptor family), class C (the metabotropic glutamate receptor family), class D (the fungal mating pheromone receptors), class E (the cAMP receptor family), and class F (the frizzled/smoothened receptor family). Nearly 800 human GPCR genes have been identified and are involved essentially in all major physiological processes. Approximately 40% of clinically marketed drugs mediate their effects through modulation of GPCR function for the treatment of a variety of human diseases including bacterial infections.


The actual alignment was detected with superfamily member cd15140:

Pssm-ID: 475119 [Multi-domain]  Cd Length: 312  Bit Score: 405.05  E-value: 3.89e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  16 GSSATMGAVLFGAGLLGNLLALVLLARSGLGSCRPGPLHPPPSVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLKEL 95
Cdd:cd15140    1 GSSVVSSSLLFAAGLLGNLLALGLLWLHKLHAKKQRGGRPRTSVFYVLVTVLTVTDLLGKCLLSPVVLAAYAQNRSLVGL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  96 LPASGNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPFFYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQ 175
Cdd:cd15140   81 TPAGNLNLCQVFAFLMIFFGLASTFILLAMALECWLSLGHPFFYQRHINKRLGALVSLILYAFCLGFCALPFFGFGRYVQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 176 YCPGTWCFIQMIHKERSFSVIGFSVLYSSLMALLVLATVVCNLGAMYNLYDMHRRQRHYPHRCSRDRaQSGSDYRHGSLH 255
Cdd:cd15140  161 YCPGTWCFIQMTAEESSTSALAYSVLYGSLMGLLVLAIVLCNLGIMRNLYQMYRRENEKGIPSTDLQ-GAAAFPRQQEPA 239
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 225543126 256 PLEELDHFVLLALMTVLFTMCSLPLIYRAYYGAFKLENKaegDSEDLQALRFLSVISIVDPWIFIIFRTSVFRMLF 331
Cdd:cd15140  240 GMEELEHLILLALMTVLFTACSLPVIARAYVGAFKGEKN---EAADLTALRFLSVNSIVDPWIFIIFRTSKFRGFL 312
 
Name Accession Description Interval E-value
7tmA_PGD2 cd15140
prostaglandin D2 receptor, member of the class A family of seven-transmembrane G ...
16-331 3.89e-142

prostaglandin D2 receptor, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin D2 receptor (also called prostanoid DP receptor, DP1, or PGD2R1) is a G-protein coupled receptor whose endogenous ligand is prostaglandin D2 (PGD2). PGD2, the major cyclooxygenase metabolite of arachidonic acid produced by mast cells, mediates inflammatory reactions in response to allergen challenge and causes peripheral vasodilation. PGD2 exerts its biological effects by binding to two types of cell surface receptors: a DP1 receptor that belongs to the prostanoid receptor family and a chemoattractant receptor-homologous molecule expressed on the T-helper type 2 cells (CRTH2 or PD2R2).


Pssm-ID: 320268 [Multi-domain]  Cd Length: 312  Bit Score: 405.05  E-value: 3.89e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  16 GSSATMGAVLFGAGLLGNLLALVLLARSGLGSCRPGPLHPPPSVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLKEL 95
Cdd:cd15140    1 GSSVVSSSLLFAAGLLGNLLALGLLWLHKLHAKKQRGGRPRTSVFYVLVTVLTVTDLLGKCLLSPVVLAAYAQNRSLVGL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  96 LPASGNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPFFYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQ 175
Cdd:cd15140   81 TPAGNLNLCQVFAFLMIFFGLASTFILLAMALECWLSLGHPFFYQRHINKRLGALVSLILYAFCLGFCALPFFGFGRYVQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 176 YCPGTWCFIQMIHKERSFSVIGFSVLYSSLMALLVLATVVCNLGAMYNLYDMHRRQRHYPHRCSRDRaQSGSDYRHGSLH 255
Cdd:cd15140  161 YCPGTWCFIQMTAEESSTSALAYSVLYGSLMGLLVLAIVLCNLGIMRNLYQMYRRENEKGIPSTDLQ-GAAAFPRQQEPA 239
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 225543126 256 PLEELDHFVLLALMTVLFTMCSLPLIYRAYYGAFKLENKaegDSEDLQALRFLSVISIVDPWIFIIFRTSVFRMLF 331
Cdd:cd15140  240 GMEELEHLILLALMTVLFTACSLPVIARAYVGAFKGEKN---EAADLTALRFLSVNSIVDPWIFIIFRTSKFRGFL 312
7tm_1 pfam00001
7 transmembrane receptor (rhodopsin family); This family contains, amongst other ...
58-318 2.79e-17

7 transmembrane receptor (rhodopsin family); This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins.


Pssm-ID: 459624 [Multi-domain]  Cd Length: 256  Bit Score: 80.42  E-value: 2.79e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126   58 SVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLkellpASGNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPF 137
Cdd:pfam00001  17 TPTNIFLLNLAVADLLFSLLTLPFWLVYYLNHGDW-----PFGSALCKIVGALFVVNGYASILLLTAISIDRYLAIVHPL 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  138 FYQRHVTLRRGVLVAPVVAAFCLAFCALPFagFGKFVQYCPG---TWCFIQMIHKERSFSVIgfsVLYSSLMALLV--LA 212
Cdd:pfam00001  92 RYKRRRTPRRAKVLILVIWVLALLLSLPPL--LFGWTLTVPEgnvTVCFIDFPEDLSKPVSY---TLLISVLGFLLplLV 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  213 TVVCNLGAMYNLYDMHRRQRHYPHRCSRDRAqsgsdyrhgslhpleeldhFVLLALMTVLFTMCSLPLIYRAYYGAFKLE 292
Cdd:pfam00001 167 ILVCYTLIIRTLRKSASKQKSSERTQRRRKA-------------------LKTLAVVVVVFILCWLPYHIVNLLDSLALD 227
                         250       260
                  ....*....|....*....|....*...
gi 225543126  293 NKAEGDSED-LQALRFLSVI-SIVDPWI 318
Cdd:pfam00001 228 CELSRLLDKaLSVTLWLAYVnSCLNPII 255
 
Name Accession Description Interval E-value
7tmA_PGD2 cd15140
prostaglandin D2 receptor, member of the class A family of seven-transmembrane G ...
16-331 3.89e-142

prostaglandin D2 receptor, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin D2 receptor (also called prostanoid DP receptor, DP1, or PGD2R1) is a G-protein coupled receptor whose endogenous ligand is prostaglandin D2 (PGD2). PGD2, the major cyclooxygenase metabolite of arachidonic acid produced by mast cells, mediates inflammatory reactions in response to allergen challenge and causes peripheral vasodilation. PGD2 exerts its biological effects by binding to two types of cell surface receptors: a DP1 receptor that belongs to the prostanoid receptor family and a chemoattractant receptor-homologous molecule expressed on the T-helper type 2 cells (CRTH2 or PD2R2).


Pssm-ID: 320268 [Multi-domain]  Cd Length: 312  Bit Score: 405.05  E-value: 3.89e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  16 GSSATMGAVLFGAGLLGNLLALVLLARSGLGSCRPGPLHPPPSVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLKEL 95
Cdd:cd15140    1 GSSVVSSSLLFAAGLLGNLLALGLLWLHKLHAKKQRGGRPRTSVFYVLVTVLTVTDLLGKCLLSPVVLAAYAQNRSLVGL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  96 LPASGNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPFFYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQ 175
Cdd:cd15140   81 TPAGNLNLCQVFAFLMIFFGLASTFILLAMALECWLSLGHPFFYQRHINKRLGALVSLILYAFCLGFCALPFFGFGRYVQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 176 YCPGTWCFIQMIHKERSFSVIGFSVLYSSLMALLVLATVVCNLGAMYNLYDMHRRQRHYPHRCSRDRaQSGSDYRHGSLH 255
Cdd:cd15140  161 YCPGTWCFIQMTAEESSTSALAYSVLYGSLMGLLVLAIVLCNLGIMRNLYQMYRRENEKGIPSTDLQ-GAAAFPRQQEPA 239
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 225543126 256 PLEELDHFVLLALMTVLFTMCSLPLIYRAYYGAFKLENKaegDSEDLQALRFLSVISIVDPWIFIIFRTSVFRMLF 331
Cdd:cd15140  240 GMEELEHLILLALMTVLFTACSLPVIARAYVGAFKGEKN---EAADLTALRFLSVNSIVDPWIFIIFRTSKFRGFL 312
7tmA_PGE2_EP2 cd15139
prostaglandin E2 receptor EP2 subtype, member of the class A family of seven-transmembrane G ...
45-330 5.07e-97

prostaglandin E2 receptor EP2 subtype, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin E2 receptor EP2, also called prostanoid EP2 receptor, is one of four receptor subtypes whose endogenous physiological ligand is prostaglandin E2 (PGE2). Each of these subtypes (EP1-EP4) have unique but overlapping tissue distributions that activate different intracellular signaling pathways. Stimulation of the EP2 receptor by PGE2 causes cAMP accumulation through G(s) protein activation, which subsequently produces smooth muscle relaxation and mediates the systemic vasodepressor response to PGE2. Prostanoids are the cyclooxygenase (COX) metabolites of arachidonic acid, which include the prostaglandins (PGD2, PGE2, PGF2alpha), prostacyclin (PGI2), and thromboxane A2 (TxA2). These five major bioactive prostanoids acts as mediators or modulators in a wide range of physiological and pathophysiological processes within the kidney and play important roles in inflammation, platelet aggregation, and vasoconstriction/relaxation, among many others. They act locally by preferentially interacting with G protein-coupled receptors designated DP, EP. FP, IP, and TP, respectively. The phylogenetic tree suggests that the prostanoid receptors can be grouped into two major branches: G(s)-coupled (DP1, EP2, EP4, and IP) and G(i)- (EP3) or G(q)-coupled (EP1, FP, and TP), forming three clusters.


Pssm-ID: 320267 [Multi-domain]  Cd Length: 299  Bit Score: 290.14  E-value: 5.07e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  45 LGSCRPGPLHPPPSVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLKELLPasGNQLCETFAFLMSFFGLASTLQLLA 124
Cdd:cd15139   25 LERRRRKEVGRRQSLFHVLVTSLVITDLLGTCLISPVVLASYSRNTTLVGMSP--NRLVCGYFGFAMTFFSLATMLILLA 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 125 MAVECWLSLGHPFFYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPGTWCFIQMIHKERSFSVigFSVLYSS 204
Cdd:cd15139  103 MALERCLSIGHPYFYERYVSKRCGYVTIPLIYLLCALFCLFPFLGFGKYVQYCPGTWCFIDMNPEASEHRA--YANLYAT 180
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 205 LMALLVLATVVCNLGAMYNLYDMHRRQRhyPHRCSRdRAQSGSDYRHGSLHplEELDHFVLLALMTVLFTMCSLPLIYRA 284
Cdd:cd15139  181 LLLLLIVAVVLCNASVIYHLVRMYRRRK--RNRSSV-GGRARSHRRRFSMA--EEVEHLILLVFMTIIFVICSLPLTIQV 255
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 225543126 285 YYGAFkleNKAEGDSEDLQALRFLSVISIVDPWIFIIFRTSVFRML 330
Cdd:cd15139  256 YMNTF---SDSENHKWDLIALRFLSVNPIIDPWVFIILSPPVLRLL 298
7tmA_Prostanoid_R cd14981
G protein-coupled receptors for prostanoids, member of the class A family of ...
57-331 2.50e-93

G protein-coupled receptors for prostanoids, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostanoids are the cyclooxygenase (COX) metabolites of arachidonic acid, which include the prostaglandins (PGD2, PGE2, PGF2alpha), prostacyclin (PGI2), and thromboxane A2 (TxA2). These five major bioactive prostanoids acts as mediators or modulators in a wide range of physiological and pathophysiological processes within the kidney and play important roles in inflammation, platelet aggregation, and vasoconstriction/relaxation, among many others. They act locally by preferentially interacting with G protein-coupled receptors designated DP, EP. FP, IP, and TP, respectively. The phylogenetic tree suggests that the prostanoid receptors can be grouped into two major branches: G(s)-coupled (DP1, EP2, EP4, and IP) and G(i)- (EP3) or G(q)-coupled (EP1, FP, and TP), forming three clusters.


Pssm-ID: 320112 [Multi-domain]  Cd Length: 288  Bit Score: 280.29  E-value: 2.50e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  57 PSVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLkellpASGNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHP 136
Cdd:cd14981   34 WSVFYRLVAGLAITDLLGILLTSPVVLAVYASNFEW-----DGGQPLCDYFGFMMSFFGLSSLLIVCAMAVERFLAITHP 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 137 FFYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPGTWCFIQMIHKErsFSVIGFSVLYSSLMALLVLATVVC 216
Cdd:cd14981  109 FFYNSHVKKRRARLMLGAVWAFALLIASLPLLGLGSYVLQYPGTWCFLDFYSKN--TGDAAYAYLYSILGLLILLVTLLC 186
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 217 NLGAMYNLYDMHRRQRhyphRCSRDRAQSGSDYRHgslhpleELDHFVLLALMTVLFTMCSLPLIYRAYYGAFKLENKAE 296
Cdd:cd14981  187 NLLVIITLLRMRRRKK----RHRRSRRSARRQKRN-------EIQMVVLLLAITVVFSVCWLPLMIRVLINATGDSEKNG 255
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 225543126 297 GdsEDLQALRFLSVISIVDPWIFIIFRTSVFRMLF 331
Cdd:cd14981  256 K--TDLLAVRMASWNQILDPWVYILLRKEVLRRLY 288
7tmA_PGI2 cd15141
prostaglandin I2 receptor, member of the class A family of seven-transmembrane G ...
57-330 5.46e-82

prostaglandin I2 receptor, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin I2 receptor (also called prostacyclin receptor or prostanoid IP receptor) is a class A, G protein-coupled receptor whose endogenous ligand is prostacyclin, which is the major product of cyclooxygenase metabolite of arachidonic acid that found predominantly in platelets and vascular smooth muscle cells (VSMCs). The PGI2 receptor is coupled to both G(s) and G(q) protein subtypes, resulting in increased cAMP formation, phosphoinositide turnover, and Ca2+ signaling. PGI2 receptor activation by prostacyclin induces VSMC differentiation and produces a potent vasodilation and inhibition of platelet aggregation.


Pssm-ID: 320269 [Multi-domain]  Cd Length: 301  Bit Score: 251.66  E-value: 5.46e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  57 PSVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLKELlpASGNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHP 136
Cdd:cd15141   36 SSAFCVLVTGLAATDLLGTCFLSPMVFVSYAQNSSLLGL--AAGQPLCHLFAFAMTFFGLASMLILFAMAVERCLAISHP 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 137 FFYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPGTWCFIQM-IHKERSFSVIGFSVLYSSLMALLVLATVV 215
Cdd:cd15141  114 YFYAQHSGRRLAKLALPAIYAFGALFCALPLLGVGRHKQYCPGTWCFIRMtVPGHREPGSLAFSLLYASLMALLIAAIFL 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 216 CNLGAMYNLYDMHRRQrhyphrcsrdRAQSGSDYRHGSLHPL-----EELDHFVLLALMTVLFTMCSLPLIYRAYYGAFK 290
Cdd:cd15141  194 CNGSVTVSLCRMYRGQ----------KARRGSLRRCGRLGWWlgqgeEEVDHLILLALMTVIFVVCSLPLTIRAFLGAIA 263
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 225543126 291 lenKAEGDSEDLQALRFLSVISIVDPWIFIIFRTSVFRML 330
Cdd:cd15141  264 ---PDGNESGDLLAFRFSAFNPILDPWIFIIFRKAVFRKL 300
7tmA_PGE2_EP4 cd15142
prostaglandin E2 receptor EP4 subtype, member of the class A family of seven-transmembrane G ...
58-330 2.41e-55

prostaglandin E2 receptor EP4 subtype, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin E2 receptor EP4, also called prostanoid EP4 receptor, is one of four receptor subtypes whose endogenous physiological ligand is prostaglandin E2 (PGE2). Each of these subtypes (EP1-EP4) have unique but overlapping tissue distributions that activate different intracellular signaling pathways. Like the EP2 receptor, stimulation of the EP4 receptor by PGE2 causes cAMP accumulation through G(s) protein activation. Knockout studies in mice suggest that EP4 receptor may be involved in the maintenance of bone mass and fracture healing. Prostanoids are the cyclooxygenase (COX) metabolites of arachidonic acid, which include the prostaglandins (PGD2, PGE2, PGF2alpha), prostacyclin (PGI2), and thromboxane A2 (TxA2). These five major bioactive prostanoids acts as mediators or modulators in a wide range of physiological and pathophysiological processes within the kidney and play important roles in inflammation, platelet aggregation, and vasoconstriction/relaxation, among many others. They act locally by preferentially interacting with G protein-coupled receptors designated DP, EP. FP, IP, and TP, respectively. The phylogenetic tree suggests that the prostanoid receptors can be grouped into two major branches: G(s)-coupled (DP1, EP2, EP4, and IP) and G(i)- (EP3) or G(q)-coupled (EP1, FP, and TP), forming three clusters.


Pssm-ID: 320270 [Multi-domain]  Cd Length: 302  Bit Score: 183.09  E-value: 2.41e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  58 SVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLKellpasGNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPF 137
Cdd:cd15142   35 TTFYTLVCGLAVTDLLGTCLASPVTIATYLKGRWPG------GQPLCEYFSFILLFFSLSGLSIICAMSIERYLAINHAY 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 138 FYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPGTWCFIQMIHKERSFSviGFSVLYSSLMALLVLATVVCN 217
Cdd:cd15142  109 FYNHYVDKRLAGLTLFAIYASNILFCALPSMGLGKSKLQYPKTWCFIDWRTNVSVHA--AYSYMYAGFSSLLILVTVLCN 186
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 218 LGAMYNLYDMHRRQRHYPHRCSRDRAQSGSDYRHGSLHPLEELDHFVLLALMTVLFTMCSLPLIYRAYYGAFK---LENK 294
Cdd:cd15142  187 VLVCGALIRMHRQFVRRTSLGTDQRLSDFRRRRSFRRMAGAEIQMVILLIATSVVVLICSIPLVVRVFVNQLYqpaVEKD 266
                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 225543126 295 AEGDSeDLQALRFLSVISIVDPWIFIIFRTSVFRML 330
Cdd:cd15142  267 LDKNP-DLQAIRIASVNPILDPWIYILLRKTVLSKL 301
7tmA_PGE2_EP3 cd15146
prostaglandin E2 receptor EP3 subtype, member of the class A family of seven-transmembrane G ...
60-328 2.76e-21

prostaglandin E2 receptor EP3 subtype, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin E2 receptor EP3, also called prostanoid EP3 receptor, is one of four receptor subtypes whose endogenous physiological ligand is prostaglandin E2 (PGE2). Each of these subtypes (EP1-EP4) have unique but overlapping tissue distributions that activate different intracellular signaling pathways. Stimulation of the EP3 receptor by PGE2 preferentially couples to G(i) protein. This leads to a decrease in adenylate cyclase activity, thereby decreasing cAMP levels, which subsequently produces smooth muscle contraction. Knockout mice studies suggest that the EP3 receptor may act as a systemic vasopressor. Prostanoids are the cyclooxygenase (COX) metabolites of arachidonic acid, which include the prostaglandins (PGD2, PGE2, PGF2alpha), prostacyclin (PGI2), and thromboxane A2 (TxA2). These five major bioactive prostanoids acts as mediators or modulators in a wide range of physiological and pathophysiological processes within the kidney and play important roles in inflammation, platelet aggregation, and vasoconstriction/relaxation, among many others. They act locally by preferentially interacting with G protein-coupled receptors designated DP, EP. FP, IP, and TP, respectively. The phylogenetic tree suggests that the prostanoid receptors can be grouped into two major branches: G(s)-coupled (DP1, EP2, EP4, and IP) and G(i)- (EP3) or G(q)-coupled (EP1, FP, and TP), forming three clusters.


Pssm-ID: 320274 [Multi-domain]  Cd Length: 308  Bit Score: 92.63  E-value: 2.76e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  60 FYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLKELLPASgnQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPFFY 139
Cdd:cd15146   40 FLLCIGSLALTDLFGQLLTSPIVISVYLSDRKWERVDPSG--RLCPFFGLCMTVFGLCPLFIASAMAIERALAIRAPHWY 117
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 140 QRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPGTWCFIQMihKERSFSVIGFSVLYSSLMALLVLATVVCNLG 219
Cdd:cd15146  118 SSHMKTRVTKAVLLGIWLAVLAFALLPIAGVGQYTLQWPGTWCFIST--GDGEPGNNFFASTFASLGLFSLCVTFSCNLA 195
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 220 AMYNLYDmhrrqrhyphRCSRDRAQSGSDYRHGSLhPLEELdhFVLLALMTVLFTMCS--LPLIYRAYYGAFKLEN---- 293
Cdd:cd15146  196 TIRALVS----------RCKTKAGASVSSKQWERI-TTETL--IQLLGIMCVLSACWSplLVLMLKMISNHTSSEHcksa 262
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 225543126 294 KAEGDSEDLQ--------ALRFLSVISIVDPWIFIIFRTSVFR 328
Cdd:cd15146  263 TAPPQSTELQkdcnffltAVRLASLNQILDPWVYLLLRKILLR 305
7tmA_PGE2_EP1 cd15144
prostaglandin E2 receptor EP1 subtype, member of the class A family of seven-transmembrane G ...
60-331 2.96e-21

prostaglandin E2 receptor EP1 subtype, member of the class A family of seven-transmembrane G protein-coupled receptors; Prostaglandin E2 receptor EP1, also called prostanoid EP1 receptor, is one of four receptor subtypes whose endogenous physiological ligand is prostaglandin E2 (PGE2). Each of these subtypes (EP1-EP4) have unique but overlapping tissue distributions that activate different intracellular signaling pathways. It has been shown that stimulation of the EP1 receptor by PGE2 causes smooth muscle contraction and increased intracellular Ca2+ levels; however, it is still unclear whether EP1 receptor is exclusively coupled to G(q/11), which leading to activation of phospholipase C and phosphatidylinositol hydrolysis. Prostanoids are the cyclooxygenase (COX) metabolites of arachidonic acid, which include the prostaglandins (PGD2, PGE2, PGF2alpha), prostacyclin (PGI2), and thromboxane A2 (TxA2). These five major bioactive prostanoids acts as mediators or modulators in a wide range of physiological and pathophysiological processes within the kidney and play important roles in inflammation, platelet aggregation, and vasoconstriction/relaxation, among many others. They act locally by preferentially interacting with G protein-coupled receptors designated DP, EP. FP, IP, and TP, respectively. The phylogenetic tree suggests that the prostanoid receptors can be grouped into two major branches: G(s)-coupled (DP1, EP2, EP4, and IP) and G(i)- (EP3) or G(q)-coupled (EP1, FP, and TP), forming three clusters.


Pssm-ID: 320272 [Multi-domain]  Cd Length: 294  Bit Score: 92.15  E-value: 2.96e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  60 FYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLKELLPASgnqLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPFFY 139
Cdd:cd15144   40 FLLFASSLVLTDLAGHVIPGALVLRLYLSGQMPAEEPRGA---LCQFFGACMVFFGLCPLFLGCAMAVERCVGVTRPLLH 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 140 QRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPGTWCFIQmIHKERSFSVIGFSVLYSSLMALLVLATVVCNLG 219
Cdd:cd15144  117 SSVVTTTRTKLSLLAIWAVALAVALLPLFRFGRYKPQFPGTWCFIK-VQPPGSWADVAFALLFSLLGLASLLVSLVCNTI 195
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 220 AMYNLYDMHRRQRhypHRCSRDRAQSgsdyrhgslHPLEELdhfVLLALMTVLFTMCSLPLIyraYYGAFKLENKAEGDS 299
Cdd:cd15144  196 SGLTLVRARLRKK---CSCSNRRAKS---------HDIEMV---VQLVGIMVVSCICWSPLL---IFVLISVSRSYERPK 257
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 225543126 300 EDLQALRFLSVI-----SIVDPWIFIIFRTSVFRMLF 331
Cdd:cd15144  258 HQYEKLLFLGVRlaswnQILDPWVYILLRRAVLRKVL 294
7tmA_TXA2_R cd15143
thromboxane A2 receptor, member of the class A family of seven-transmembrane G protein-coupled ...
58-331 1.59e-20

thromboxane A2 receptor, member of the class A family of seven-transmembrane G protein-coupled receptors; The thromboxane receptor, also known as the prostanoid TP receptor, is a class A G-protein coupled receptor whose endogenous ligand is thromboxane A2 (TXA2). TXA2 is the major product of cyclooxygenase metabolite of arachidonic acid that found predominantly in platelets and stimulates platelet aggregation, Ca2+ influx into platelets, and also causes vasoconstriction. TXA2 has been shown to be involved in immune regulation, angiogenesis and metastasis, among many others. Activation of TXA2 receptor is coupled to G(q) and G(13), resulting in the activations of phospholipase C and RhoGEF, respectively. TXA2 receptor is widely distributed in the body and is abundantly expressed in thymus and spleen.


Pssm-ID: 320271 [Multi-domain]  Cd Length: 296  Bit Score: 90.26  E-value: 1.59e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  58 SVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLKELLPASgnQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPF 137
Cdd:cd15143   38 SSFLIFLCGLVVTDFLGLLVTGTIVISFHLTNFNWRVVDPDC--YLCNFMGLSMVFYGLCPLLLGATMAVERFFGINRPF 115
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 138 FYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPGTWCFIQMIHKERSfsvIGFSVLYSSLMALLVLATVVCN 217
Cdd:cd15143  116 SRSTAMSKRRAWYMVGMVWAFAFLLGLLPILGLGRYTLQYPGSWCFLTLLFDSKD---VAFGLLFSFLGILSVGLSFLLN 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 218 LGAMYNLYDMHrrqrhyphrCSRDRAQSGSDyrhgslhplEELDHFVLLALMTVLFTMCSLPLIyrAYYGAFKLENKAEG 297
Cdd:cd15143  193 TVSVVTLCRVY---------HDRESVQRRRD---------SEVEMMVQLLGIMVIASVCWLPLL--VFIAQTVLQKPPAM 252
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 225543126 298 DSED----------LQALRFLSVISIVDPWIFIIFRTSVFRMLF 331
Cdd:cd15143  253 LLAGqiprltekklLIYLRFATWNQILDPWVYILFRRAVLKRLY 296
7tm_1 pfam00001
7 transmembrane receptor (rhodopsin family); This family contains, amongst other ...
58-318 2.79e-17

7 transmembrane receptor (rhodopsin family); This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins.


Pssm-ID: 459624 [Multi-domain]  Cd Length: 256  Bit Score: 80.42  E-value: 2.79e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126   58 SVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLkellpASGNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPF 137
Cdd:pfam00001  17 TPTNIFLLNLAVADLLFSLLTLPFWLVYYLNHGDW-----PFGSALCKIVGALFVVNGYASILLLTAISIDRYLAIVHPL 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  138 FYQRHVTLRRGVLVAPVVAAFCLAFCALPFagFGKFVQYCPG---TWCFIQMIHKERSFSVIgfsVLYSSLMALLV--LA 212
Cdd:pfam00001  92 RYKRRRTPRRAKVLILVIWVLALLLSLPPL--LFGWTLTVPEgnvTVCFIDFPEDLSKPVSY---TLLISVLGFLLplLV 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  213 TVVCNLGAMYNLYDMHRRQRHYPHRCSRDRAqsgsdyrhgslhpleeldhFVLLALMTVLFTMCSLPLIYRAYYGAFKLE 292
Cdd:pfam00001 167 ILVCYTLIIRTLRKSASKQKSSERTQRRRKA-------------------LKTLAVVVVVFILCWLPYHIVNLLDSLALD 227
                         250       260
                  ....*....|....*....|....*...
gi 225543126  293 NKAEGDSED-LQALRFLSVI-SIVDPWI 318
Cdd:pfam00001 228 CELSRLLDKaLSVTLWLAYVnSCLNPII 255
7tm_classA_rhodopsin-like cd00637
rhodopsin receptor-like class A family of the seven-transmembrane G protein-coupled receptor ...
58-322 3.49e-17

rhodopsin receptor-like class A family of the seven-transmembrane G protein-coupled receptor superfamily; Class A rhodopsin-like receptors constitute about 90% of all GPCRs. The class A GPCRs include the light-sensitive rhodopsin as well as receptors for biogenic amines, lipids, nucleotides, odorants, peptide hormones, and a variety of other ligands. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes. Based on sequence similarity, GPCRs can be divided into six major classes: class A (rhodopsin-like family), class B (Methuselah-like, adhesion and secretin-like receptor family), class C (metabotropic glutamate receptor family), class D (fungal mating pheromone receptors), class E (cAMP receptor family), and class F (frizzled/smoothened receptor family). Nearly 800 human GPCR genes have been identified and are involved essentially in all major physiological processes. Approximately 40% of clinically marketed drugs mediate their effects through modulation of GPCR function for the treatment of a variety of human diseases including bacterial infections.


Pssm-ID: 410626 [Multi-domain]  Cd Length: 275  Bit Score: 80.41  E-value: 3.49e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  58 SVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQslkellPASGNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPF 137
Cdd:cd00637   31 TVTNYFILNLAVADLLVGLLVIPFSLVSLLLGR------WWFGDALCKLLGFLQSVSLLASILTLTAISVDRYLAIVHPL 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 138 FYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPGTWCFIQM-IHKERSFSVIGFSVLYsslmALLVLATVVC 216
Cdd:cd00637  105 RYRRRFTRRRAKLLIALIWLLSLLLALPPLLGWGVYDYGGYCCCCLCWPdLTLSKAYTIFLFVLLF----LLPLLVIIVC 180
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 217 NLGAMYNLYdMHRRQRHYPHRCSRDRAQSGSDYRhgslhpleeldHFVLLALMTVLFTMCSLPLIYRAYYGAFKLENkae 296
Cdd:cd00637  181 YVRIFRKLR-RHRRRIRSSSSNSSRRRRRRRERK-----------VTKTLLIVVVVFLLCWLPYFILLLLDVFGPDP--- 245
                        250       260       270
                 ....*....|....*....|....*....|.
gi 225543126 297 gdSEDLQALRFLSVI-----SIVDPWIFIIF 322
Cdd:cd00637  246 --SPLPRILYFLALLlaylnSAINPIIYAFF 274
7tmA_FP cd15145
prostaglandin F2-alpha receptor, member of the class A family of seven-transmembrane G ...
58-331 2.34e-13

prostaglandin F2-alpha receptor, member of the class A family of seven-transmembrane G protein-coupled receptors; The PGF2-alpha receptor, also called prostanoid FP receptor, is a class A G-protein coupled receptor whose endogenous ligand is prostaglandin F2-alpha. PGF2-alpha binding to this receptor is coupled to the stimulation of phospholipase C (PLC) pathway via G-protein subunit G(q). This leads to the release of inositol trisphosphate (IP3) and diacylglycerol (DAG) which results in increased intracellular Ca2+ levels and activation of PKC. The receptor activation primarily induces uterine contraction and bronchoconstriction, and stimulates luteolysis. Like most prostanoid receptors, the PGF2-alpha receptor has also been implicated in tumor angiogenesis and metastasis.


Pssm-ID: 320273 [Multi-domain]  Cd Length: 290  Bit Score: 69.47  E-value: 2.34e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  58 SVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLKELlpASGNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPF 137
Cdd:cd15145   38 ASFLLLASGLVITDFFGHLINGTIAVFVYASDKDWIRF--DQSNILCSVFGICMVFFGLCPLLLGSVMAVERCIGVTKPI 115
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 138 FYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPGTWCFIQMIHK---ERSFSVIGFSVLysSLMALLVlaTV 214
Cdd:cd15145  116 FHSTKMTSKHVKMMLSGVCLFAVLVALLPILGHRDYQIQASRTWCFYKTEHIedwEDRFYLLLFSFL--GLLALAI--SF 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 215 VCNlgAMYNLYDMHRRQRHYPHrcsrdraqsgsdyRHGSLHPLEELDHfvLLALMTVlFTMCSLPLIYRAYYGAFKLENK 294
Cdd:cd15145  192 LCN--AITGITLLRVKFRSQQH-------------RQGRSHHFEMVIQ--LLAIMCV-SCICWSPFLVTMANIGINGRDS 253
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 225543126 295 AEGDSEDLQALRFLSVISIVDPWIFIIFRTSVFRMLF 331
Cdd:cd15145  254 LESCETILFALRMATWNQILDPWVYILLRKAVLKNLY 290
7tmA_Opsins_type2_animals cd14969
type 2 opsins in animals, member of the class A family of seven-transmembrane G ...
58-279 1.35e-09

type 2 opsins in animals, member of the class A family of seven-transmembrane G protein-coupled receptors; This rhodopsin family represents the type 2 opsins found in vertebrates and invertebrates except sponge. Type 2 opsins primarily function as G protein coupled receptors and are responsible for vision as well as for circadian rhythm and pigment regulation. On the contrary, type 1 opsins such as bacteriorhodopsin and proteorhodopsin are found in both prokaryotic and eukaryotic microbes, functioning as light-gated ion channels, proton pumps, sensory receptors and in other unknown functions. Although these two opsin types share seven-transmembrane domain topology and a conserved lysine reside in the seventh helix, type 1 opsins do not activate G-proteins and are not evolutionarily related to type 2. Type 2 opsins can be classified into six distinct subfamilies including the vertebrate opsins/encephalopsins, the G(o) opsins, the G(s) opsins, the invertebrate G(q) opsins, the photoisomerases, and the neuropsins.


Pssm-ID: 381741 [Multi-domain]  Cd Length: 284  Bit Score: 58.37  E-value: 1.35e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  58 SVFYVLVCGLTVTDLLGKCLISPMVLAAYAQNQSLkellpaSGNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPF 137
Cdd:cd14969   33 TPLNLFLLNLALADLLMSVVGYPLSFYSNLSGRWS------FGDPGCVIYGFAVTFLGLVSISTLAALAFERYLVIVRPL 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 138 FYQRhVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPGTWCFIQMIHKERSFsvigfsvlYSSLMALLVLATVVCN 217
Cdd:cd14969  107 KAFR-LSKRRALILIAFIWLYGLFWALPPLFGWSSYVPEGGGTSCSVDWYSKDPNS--------LSYIVSLFVFCFFLPL 177
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 225543126 218 LGAMYNLYDMHRRQRHYPHRCSRDRAQSGSDYRHGSlhpleELDHFVLLALMTVLFTMCSLP 279
Cdd:cd14969  178 AIIIFCYYKIYRTLRKMSKRAARRKNSAITKRTKKA-----EKKVAKMVLVMIVAFLIAWTP 234
7tmA_Melanopsin-like cd15083
vertebrate melanopsins and related opsins, member of the class A family of seven-transmembrane ...
48-174 1.74e-07

vertebrate melanopsins and related opsins, member of the class A family of seven-transmembrane G protein-coupled receptors; This group represent the Gq-coupled rhodopsin subfamily consists of melanopsins, insect photoreceptors R1-R6, invertebrate Gq opsins as well as their closely related opsins. Melanopsins (also called Opsin-4) are the primary photoreceptor molecules for non-visual functions such as the photo-entrainment of the circadian rhythm and pupillary constriction in mammals. Mammalian melanopsins are expressed only in the inner retina, whereas non-mammalian vertebrate melanopsins are localized in various extra-retinal tissues such as iris, brain, pineal gland, and skin. The outer photoreceptors (R1-R6) are the insect Drosophila equivalent to the vertebrate rods and are responsible for image formation and motion detection. The invertebrate G(q) opsins includes the arthropod and mollusk visual opsins as well as invertebrate melanopsins, which are also found in vertebrates. Arthropods possess color vision by the use of multiple opsins sensitive to different light wavelengths. Members of this subfamily belong to the class A of the G protein-coupled receptors and have seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops.


Pssm-ID: 320211 [Multi-domain]  Cd Length: 291  Bit Score: 51.95  E-value: 1.74e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  48 CRPGPLHPPPsvfYVLVCGLTVTDLLGKCLISPM-VLAAYAQNQSLkellpasGNQLCETFAFLMSFFGLASTLQLLAMA 126
Cdd:cd15083   26 CRFKSLRTPA---NYLIINLAISDFLMCILNCPLmVISSFSGRWIF-------GKTGCDMYGFSGGLFGIMSINTLAAIA 95
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 225543126 127 VECWLSLGHPFFYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFV 174
Cdd:cd15083   96 VDRYLVITRPMKASVRISHRRALIVIAVVWLYSLLWVLPPLFGWSRYV 143
7tmA_EDG-like cd14972
endothelial differentiation gene family, member of the class A family of seven-transmembrane G ...
53-319 2.83e-07

endothelial differentiation gene family, member of the class A family of seven-transmembrane G protein-coupled receptors; This group represents the endothelial differentiation gene (Edg) family of G-protein coupled receptors, melanocortin/ACTH receptors, and cannabinoid receptors as well as their closely related receptors. The Edg GPCRs bind blood borne lysophospholipids including sphingosine-1-phosphate (S1P) and lysophosphatidic acid (LPA), which are involved in the regulation of cell proliferation, survival, migration, invasion, endothelial cell shape change and cytoskeletal remodeling. The Edg receptors are classified into two subfamilies: the lysophosphatidic acid subfamily that includes LPA1 (Edg2), LPA2 (Edg4), and LPA3 (Edg7); and the S1P subfamily that includes S1P1 (Edg1), S1P2 (Edg5), S1P3 (Edg3), S1P4 (Edg6), and S1P5 (Edg8). Melanocortin receptors bind a group of pituitary peptide hormones known as melanocortins, which include adrenocorticotropic hormone (ACTH) and the different isoforms of melanocyte-stimulating hormones. Two types of cannabinoid receptors, CB1 and CB2, are activated by naturally occurring endocannabinoids, cannabis plant-derived cannabinoids such as tetrahydrocannabinol, or synthetic cannabinoids. The CB receptors are involved in the various physiological processes such as appetite, mood, memory, and pain sensation. CB1 receptor is expressed predominantly in central and peripheral neurons, while CB2 receptor is found mainly in the immune system.


Pssm-ID: 341317 [Multi-domain]  Cd Length: 275  Bit Score: 51.14  E-value: 2.83e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  53 LHPPPsvfYVLVCGLTVTDLLGKCLIspmVLAAYAQNQSLKELLPASGNqLCETFAFLMsffGLASTLQLLAMAVECWLS 132
Cdd:cd14972   29 LHKPM---YILIANLAAADLLAGIAF---VFTFLSVLLVSLTPSPATWL-LRKGSLVLS---LLASAYSLLAIAVDRYIS 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 133 LGHPFFYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGfgkfvqycpgtWCFIQMIHKERSFSVIGFSVLYSSLMA----L 208
Cdd:cd14972   99 IVHGLTYVNNVTNKRVKVLIALVWVWSVLLALLPVLG-----------WNCVLCDQESCSPLGPGLPKSYLVLILvfffI 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 209 LVLATVVCNLGaMYNLYDMHRRQRHYPHRCSRDRaqsgsdyrhgslHPLEELDHFVLLALMTVLFTMCSLPLIYRAYYGA 288
Cdd:cd14972  168 ALVIIVFLYVR-IFWCLWRHANAIAARQEAAVPA------------QPSTSRKLAKTVVIVLGVFLVCWLPLLILLVLDV 234
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 225543126 289 FKLENKaegdsEDLQALRFLSVI----SIVDPWIF 319
Cdd:cd14972  235 LCPSVC-----DIQAVFYYFLVLallnSAINPIIY 264
7tmA_FMRFamide_R-like cd14978
FMRFamide (Phe-Met-Arg-Phe) receptors and related proteins, member of the class A family of ...
58-281 4.22e-06

FMRFamide (Phe-Met-Arg-Phe) receptors and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors; This group includes Drosophila melanogaster G-protein coupled FMRFamide (Phe-Met-Arg-Phe-NH2) receptor DrmFMRFa-R and related invertebrate receptors, as well as the vertebrate proteins GPR139 and GPR142. DrmFMRFa-R binds with high affinity to FMRFamide and intrinsic FMRFamide-related peptides. FMRFamide is a neuropeptide from the family of FMRFamide-related peptides (FaRPs), which all containing a C-terminal RFamide (Arg-Phe-NH2) motif and have diverse functions in the central and peripheral nervous systems. FMRFamide is an important neuropeptide in many types of invertebrates such as insects, nematodes, molluscs, and worms. In invertebrates, the FMRFamide-related peptides are involved in the regulation of heart rate, blood pressure, gut motility, feeding behavior, and reproduction. On the other hand, in vertebrates such as mice, they play a role in the modulation of morphine-induced antinociception. Orphan receptors GPR139 and GPR142 are very closely related G protein-coupled receptors, but they have different expression patterns in the brain and in other tissues. These receptors couple to inhibitory G proteins and activate phospholipase C. Studies suggested that dimer formation may be required for their proper function. GPR142 is predominantly expressed in pancreatic beta-cells and mediates enhancement of glucose-stimulated insulin secretion, whereas GPR139 is mostly expressed in the brain and is suggested to play a role in the control of locomotor activity. Tryptophan and phenylalanine have been identified as putative endogenous ligands of GPR139.


Pssm-ID: 410630 [Multi-domain]  Cd Length: 299  Bit Score: 47.63  E-value: 4.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  58 SVFYVLvCGLTVTDLLgkclispmVLAAYAQNQSLKELLPASGNQLCETFAF-------LMSFFGLASTLQLLAMAVECW 130
Cdd:cd14978   33 STNVYL-AALAVSDIL--------VLLSALPLFLLPYIADYSSSFLSYFYAYflpyiypLANTFQTASVWLTVALTVERY 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 131 LSLGHPFFYQRHVTLRRGVLVAPVVAAFCLAFCALPFagFGKFVQYCP--GTWCFIQMIH----KERSFSVIGFSVLYSS 204
Cdd:cd14978  104 IAVCHPLKARTWCTPRRARRVILIIIIFSLLLNLPRF--FEYEVVECEncNNNSYYYVIPtllrQNETYLLKYYFWLYAI 181
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 225543126 205 LMALLVLAT-VVCNLGAMYNLYDMHRRQRHYPHRCSRDRAQSGsdyrhgslhplEELDHFVLLALMTVLFTMCSLPLI 281
Cdd:cd14978  182 FVVLLPFILlLILNILLIRALRKSKKRRRLLRRRRRLLSRSQR-----------RERRTTIMLIAVVIVFLICNLPAG 248
7tmA_Peropsin cd15073
retinal pigment epithelium-derived rhodopsin homolog, member of the class A family of ...
100-235 1.92e-05

retinal pigment epithelium-derived rhodopsin homolog, member of the class A family of seven-transmembrane G protein-coupled receptors; Peropsin, also known as a retinal pigment epithelium-derived rhodopsin homolog (RRH), is a visual pigment-like protein found exclusively in the apical microvilli of the retinal pigment epithelium. Peropsin belongs to the type 2 opsin family of the class A G-protein coupled receptors. Peropsin presumably plays a physiological role in the retinal pigment epithelium either by detecting light directly or monitoring the levels of retinoids, the primary light absorber in visual perception, or other pigment-related compounds in the eye.


Pssm-ID: 320201 [Multi-domain]  Cd Length: 280  Bit Score: 45.88  E-value: 1.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 100 GNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPFFYQRhVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPG 179
Cdd:cd15073   69 GYAGCQWYAFLNIFFGMASIGLLTVVAVDRYLTICRPDLGRK-MTTNTYTVMILLAWTNAFFWAAMPLVGWASYALDPTG 147
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 225543126 180 TWCFIQMIHKERSFSvigfsvlySSLMALLVLATVVCNLGAMYNLYDMHRRQRHYP 235
Cdd:cd15073  148 ATCTINWRKNDSSFV--------SYTMSVIVVNFIVPLAVMFYCYYNVSRFVKKVL 195
7tmA_Opsin_Gq_invertebrates cd15337
invertebrate Gq opsins, member of the class A family of seven-transmembrane G protein-coupled ...
100-174 3.10e-05

invertebrate Gq opsins, member of the class A family of seven-transmembrane G protein-coupled receptors; The invertebrate Gq-coupled opsin subfamily includes the arthropod and mollusc visual opsins. Like the vertebrate visual opsins, arthropods possess color vision by the use of multiple opsins sensitive to different light wavelengths. The invertebrate Gq opsins are closely related to the vertebrate melanopsins, the primary photoreceptor molecules for non-visual responses to light, and the R1-R6 photoreceptors, which are the fly equivalent to the vertebrate rods. The Gq opsins belong the class A of the G protein-coupled receptors and possess seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops.


Pssm-ID: 320459 [Multi-domain]  Cd Length: 292  Bit Score: 45.00  E-value: 3.10e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 225543126 100 GNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPFFYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFV 174
Cdd:cd15337   70 GKVACELYGFAGGIFGFMSITTLAAISIDRYLVIAKPLEAMKKMTFKRAFIMIIIIWLWSLLWSIPPFFGWGRYV 144
7tmA_Opsin5_neuropsin cd15074
neuropsin (Opsin-5), member of the class A family of seven-transmembrane G protein-coupled ...
100-215 3.39e-05

neuropsin (Opsin-5), member of the class A family of seven-transmembrane G protein-coupled receptors; Neuropsin, also known as Opsin-5, is a photoreceptor protein expressed in the retina, brain, testes, and spinal cord. Neuropsin belongs to the type 2 opsin family of the class A G-protein coupled receptors. Mammalian neuropsin activates Gi protein-mediated photo-transduction pathway in a UV-dependent manner, whereas, in non-mammalian vertebrates, neuropsin is involved in regulating the photoperiodic control of seasonal reproduction in birds such as quail. As with other opsins, it may also act as a retinal photoisomerase.


Pssm-ID: 320202 [Multi-domain]  Cd Length: 284  Bit Score: 44.96  E-value: 3.39e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126 100 GNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPfFYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPG 179
Cdd:cd15074   69 GDIGCVFYGFCGFLFGCCSINTLTAISIYRYLKICHP-PYGPKLSRRHVCIVIVAIWLYALFWAVAPLVGWGSYGPEPFG 147
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 225543126 180 TWCFIQMIHkeRSFSVIGFSVLYSSLMALLVLATVV 215
Cdd:cd15074  148 TSCSIDWTG--ASASVGGMSYIISIFIFCYLLPVLI 181
7tmA_GPR101 cd15215
orphan G protein-coupled receptor 101, member of the class A family of seven-transmembrane G ...
53-172 1.83e-04

orphan G protein-coupled receptor 101, member of the class A family of seven-transmembrane G protein-coupled receptors; Gpr101, an orphan GPCR, is predominantly expressed in the brain within discrete nuclei and is predicted to couple to the stimulatory G(s) protein, a potent activator of adenylate cyclase. GPR101 has been implicated in mediating the actions of GnRH-(1-5), a pentapeptide formed by metallopeptidase cleavage of the decapeptide gonadotropin-releasing hormone (GnRH), which plays a critical role in the regulation of the hypothalamic-pituitary-gonadal axis. GnRH-(1-5) acts on GPR101 to stimulate epidermal growth factor (EFG) release and EFG-receptor (EGFR) phosphorylation, leading to enhanced cell migration and invasion in the Ishikawa endometrial cancer cell line. Furthermore, these effects of GnRH-(1-5) are also dependent on enzymatic activation of matrix metallopeptidase-9 (MMP-9). GPR101 is a member of the class A family of GPCRs, which includes receptors for hormones, neurotransmitters, sensory stimuli, and a variety of other ligands. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes.


Pssm-ID: 320343 [Multi-domain]  Cd Length: 261  Bit Score: 42.52  E-value: 1.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  53 LHPPPSVFYV---LVCGLTVTDLLGKCLISPMVLAAyaqnqSLKELLPASgNQLCETFAFLMSFFGLASTLQLLAMAVEC 129
Cdd:cd15215   24 FQRKPQLLQVanrFIFNLLVADLLQTVLVMPWVIAT-----SVPLFWPLD-SHLCTALVVLMHLFAFAGVNTIVVVSVDR 97
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 225543126 130 WLSLGHPFFYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGK 172
Cdd:cd15215   98 YLAIIHPLSYPTKMTPRRGYLLIYGTWIVSVLQSTPPLYGWGQ 140
7tmA_Melanopsin cd15336
vertebrate melanopsins (Opsin-4), member of the class A family of seven-transmembrane G ...
48-182 2.81e-04

vertebrate melanopsins (Opsin-4), member of the class A family of seven-transmembrane G protein-coupled receptors; Melanopsin (also called Opsin-4) is the G protein-coupled photopigment that mediates non-visual responses to light. In mammals, these photoresponses include the photo-entrainment of circadian rhythm, pupillary constriction, and acute nocturnal melatonin suppression. Mammalian melanopsins are expressed only in the inner retina, whereas non-mammalian vertebrate melanopsins are localized in various extra-retinal tissues such as iris, brain, pineal gland, and skin. Melanopsins belong the class A of the G protein-coupled receptors and possess seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops.


Pssm-ID: 320458 [Multi-domain]  Cd Length: 290  Bit Score: 42.01  E-value: 2.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  48 CRPGPLHPPPSVFYVlvcGLTVTDLLGKCLISPMVLAAYAQNQSLkellpaSGNQLCETFAFLMSFFGLASTLQLLAMAV 127
Cdd:cd15336   26 CRSKKLRTPANYFII---NLAVSDFLMSLTQSPIFFVNSLHKRWI------FGEKGCELYAFCGALFGITSMITLLAISL 96
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 225543126 128 ECWLSLGHPFFYQRHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPGTWC 182
Cdd:cd15336   97 DRYLVITKPLASIRWVSKKRAMIIILLVWLYSLAWSLPPLFGWSAYVPEGLLTSC 151
7tmA_capaR cd15134
neuropeptide capa receptor and similar invertebrate proteins, member of the class A family of ...
100-169 1.51e-03

neuropeptide capa receptor and similar invertebrate proteins, member of the class A family of seven-transmembrane G protein-coupled receptors; CapaR is a G-protein coupled receptor for the Drosophila melanogaster capa neuropeptides (Drm-capa-1 and -2), which act on the Malpighian tubules to increase fluid transport. The capa peptides are evolutionarily related to vertebrate Neuromedin U neuropeptide and contain a C-terminal FPRXamide motif. CapaR regulates fluid homeostasis through its ligands, thereby acts as a desiccation stress-responsive receptor. CapaR undergoes desensitization, with internalization mediated by beta-arrestin-2.


Pssm-ID: 320262 [Multi-domain]  Cd Length: 298  Bit Score: 40.01  E-value: 1.51e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 225543126 100 GNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPFFYQRHVTLRRGVLVapVVAAFCLAF-CALPFAG 169
Cdd:cd15134   70 GEVFCKLRAFLSEMSSYASVLTITAFSVERYLAICHPLRSHTMSKLSRAIRI--IIAIWIIAFvCALPFAI 138
7tmA_5-HT2_insect-like cd15307
serotonin receptor subtype 2 from insects, member of the class A family of seven-transmembrane ...
67-168 5.69e-03

serotonin receptor subtype 2 from insects, member of the class A family of seven-transmembrane G protein-coupled receptors; The 5-HT2 receptors are a subfamily of serotonin receptors that bind the neurotransmitter serotonin (5HT; 5-hydroxytryptamine) in the central nervous system (CNS). The 5-HT2 subfamily is composed of three subtypes that mediate excitatory neurotransmission: 5-HT2A, 5-HT2B, and 5-HT2C. They are selectively linked to G proteins of the G(q/11) family and activate phospholipase C, which leads to activation of protein kinase C and calcium release. In the CNS, serotonin is involved in the regulation of appetite, mood, sleep, cognition, learning and memory, as well as implicated in diseases such as migraine, schizophrenia, and depression. Indeed, 5-HT2 receptors are attractive targets for a variety of psychoactive drugs, ranging from atypical antipsychotic drugs, antidepressants, and anxiolytics, which have an antagonistic action on 5-HT2 receptors, to hallucinogens, which act as agonists at postsynaptic 5-HT2 receptors. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes.


Pssm-ID: 320433 [Multi-domain]  Cd Length: 279  Bit Score: 38.01  E-value: 5.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225543126  67 LTVTDLLGKCLISPMVLAAYaqnqsLKELLPASgNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPFFYQRHVTLR 146
Cdd:cd15307   42 LAITDLMVAVLVMPLGILTL-----VKGHFPLS-SEHCLTWICLDVLFCTASIMHLCTISVDRYLSLRYPMRFGRNKTRR 115
                         90       100
                 ....*....|....*....|...
gi 225543126 147 RGVLvaPVVAAFCLAFCA-LPFA 168
Cdd:cd15307  116 RVTL--KIVFVWLLSIAMsLPLS 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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