|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1445-1551 |
4.00e-62 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
:
Pssm-ID: 460201 Cd Length: 110 Bit Score: 207.06 E-value: 4.00e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1445 FIFTRHSQTTAIPSCPEGTQPLYSGFSLLFVQGNKRAHGQDLGTLGSCLQRFTTMPFLFCNINNVCNFASrNDYSYWLST 1524
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|
gi 145699101 1525 PAL---MPMDMAPISGRALEPYISRCTVCE 1551
Cdd:pfam01413 80 VEEqfrKPMSQTPKAGNELRSYISRCVVCE 109
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1555-1666 |
3.55e-60 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
:
Pssm-ID: 460201 Cd Length: 110 Bit Score: 201.67 E-value: 3.55e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1555 MAIAVHSQTTAIPPCPQDWVSLWKGFSFIMFTSAGsEGAGQALASPGSCLEEFRASPFIECHGRGTCNYYSNSYSFWLAS 1634
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|...
gi 145699101 1635 lnPERMFRKPIPSTVKAGD-LEKIISRCQVCMK 1666
Cdd:pfam01413 80 --VEEQFRKPMSQTPKAGNeLRSYISRCVVCEA 110
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
911-1186 |
3.21e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 98.82 E-value: 3.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 911 GQRGSLGIPGMKGEKGRPGAKGERGEKGKPGPSQTTLLKGDKGEPGLKGFVGNPGEKGNRGNPGLPGPKGLEGLPGLPGP 990
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 991 PGPRGDTGSRGNPGRPGPHGMPGSMGIMGVPGPKGRkgtsGLPGLAGRPGLTGIHGPQGDKGEPGysegarpgppgpkgd 1070
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD----GQQGPDGDPGPTGEDGPQGPDGPAG--------------- 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1071 pglpgDKGKKGERGVPGPPGQSGPAGPDGAPGSPGSPGHPGKPGPAGDLGLKGQKGFPGPPGSTGPPgppglpglpgpmg 1150
Cdd:NF038329 258 -----KDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKD------------- 319
|
250 260 270
....*....|....*....|....*....|....*.
gi 145699101 1151 mrGDQGRDGIPGPPGEKGETGllgaYPGPKgSPGVP 1186
Cdd:NF038329 320 --GQPGKDGLPGKDGKDGQPG----KPAPK-TPEVP 348
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
286-563 |
9.44e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 78.79 E-value: 9.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 286 EKGAPGEPGPRGKPGKDGAPGFPGTEGAKGNRGFPGLRGEAGIKGRKGDIGPPGfpgpteyydaylEKGERGMPGLPGPK 365
Cdd:NF038329 136 PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAG------------EKGPQGPRGETGPA 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 366 GARgpqgpsgppgvpgspglsrpGLRGPIGWPGLKGSKGERGPPGKDTVGPPGPLGCpgspgppgppgppgcpgdivfkc 445
Cdd:NF038329 204 GEQ--------------------GPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD----------------------- 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 446 sPGEHGMPGDTGPPGVPGLDGPKGEPGSPctechcfpgppgvpgfpGLDGIKGIPGGRGVPGLKGNPGSPGSAGLPGFAG 525
Cdd:NF038329 241 -PGPTGEDGPQGPDGPAGKDGPRGDRGEA-----------------GPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302
|
250 260 270
....*....|....*....|....*....|....*...
gi 145699101 526 FPGDQGHPGLKGDKGDTPLPwGQVGNPGDPGLRGLPGR 563
Cdd:NF038329 303 KDGQNGKDGLPGKDGKDGQP-GKDGLPGKDGKDGQPGK 339
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1078-1427 |
9.31e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.71 E-value: 9.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1078 GKKGERGVPGPPGQSGPAGPDGAPGSPGSPGHPGKPGPAGDLGLKGQKgfpgppgstgppgppglpglpgpmgmrGDQGR 1157
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPA---------------------------GPQGE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1158 DGIPGPPGEKGETGLLGAyPGPKGSPGVPGAKGDRGVPGLSGLPGRKGVMGDVGPQGPPGTAGLpgppglpgaiipGPKG 1237
Cdd:NF038329 170 AGPQGPAGKDGEAGAKGP-AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD------------GQQG 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1238 DRGLPGLRGNPGEPGPPGPPGPIgkgikgdkgfmgppgpkglpgtvgdmgppgfpgapgtpglpGVRGDPGFPGFPGIKG 1317
Cdd:NF038329 237 PDGDPGPTGEDGPQGPDGPAGKD-----------------------------------------GPRGDRGEAGPDGPDG 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1318 EKGNPGFLGPighpgpvgpkgppgprgkpgtlkvislpgspgppgvpgqpgmKGDPGPLGLPGIPGPCGPRGKPGKDGKP 1397
Cdd:NF038329 276 KDGERGPVGP------------------------------------------AGKDGQNGKDGLPGKDGKDGQNGKDGLP 313
|
330 340 350
....*....|....*....|....*....|
gi 145699101 1398 GTPGPAGTKGNKGLKGQQGPPGLDGLPGLK 1427
Cdd:NF038329 314 GKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
59-365 |
1.62e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 71.86 E-value: 1.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 59 FPGQKGFPGPEGLPGPQGPKGSPGLPGLTGPKGIRGITGLPGfagppglpglpghpgPRGLAGLPGCNGSKGEQGFPGFP 138
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQG---------------ERGEKGPAGPQGEAGPQGPAGKD 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 139 GTPGYAGLPGPDGLKGQKGEPAQGEDRGfngkgdpgppgvpgfqgfpglpgfpgpagPPGPPGFFGLPGAMGPRGPKGHM 218
Cdd:NF038329 180 GEAGAKGPAGEKGPQGPRGETGPAGEQG-----------------------------PAGPAGPDGEAGPAGEDGPAGPA 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 219 GDSVIGQKGERGMKGLTGPPGppgtviftltqPYNKSDFKGEKGDegergepgppgpsgppgdsygseKGAPGEPGPRGK 298
Cdd:NF038329 231 GDGQQGPDGDPGPTGEDGPQG-----------PDGPAGKDGPRGD-----------------------RGEAGPDGPDGK 276
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 145699101 299 PGKDGAPGFPGTEGAKGNRGFPGLRGEAGIKGRKGDIGPPGFPGPTEYYDAYLEKGERGMPGLPGPK 365
Cdd:NF038329 277 DGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
673-979 |
7.60e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 69.55 E-value: 7.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 673 GLPGPVGKCDPGLPGPDGEPGipeagcpgppgPKGNQGFPGTKGSPGCPGEMGKPGRPGEPGIPGAKGEPS-VGRPGKPG 751
Cdd:NF038329 109 GLQQLKGDGEKGEPGPAGPAG-----------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGeAGPQGPAG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 752 KPGFPGERGNAGENGDiglpglpglpgtpgrggldgppgdpgqpgspgakgspgrciPGPRGTQGLPGLNGLKGQPGRRG 831
Cdd:NF038329 178 KDGEAGAKGPAGEKGP-----------------------------------------QGPRGETGPAGEQGPAGPAGPDG 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 832 DTGPKGDPGIPGMDrsgvpgdpgppgtpgCPGEMGPPGQKGYPGAPGFPGPPGEKGEVGMMGYPGTTGPPGLPGKPGSQG 911
Cdd:NF038329 217 EAGPAGEDGPAGPA---------------GDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERG 281
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 145699101 912 QRGSLGIPGMKGEKGRPGAKGERGEKGKPGpsqttlLKGDKGEPGLKGFVGNPGEKGNRGNPGLPGPK 979
Cdd:NF038329 282 PVGPAGKDGQNGKDGLPGKDGKDGQNGKDG------LPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1445-1551 |
4.00e-62 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 207.06 E-value: 4.00e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1445 FIFTRHSQTTAIPSCPEGTQPLYSGFSLLFVQGNKRAHGQDLGTLGSCLQRFTTMPFLFCNINNVCNFASrNDYSYWLST 1524
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|
gi 145699101 1525 PAL---MPMDMAPISGRALEPYISRCTVCE 1551
Cdd:pfam01413 80 VEEqfrKPMSQTPKAGNELRSYISRCVVCE 109
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1555-1666 |
3.55e-60 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 201.67 E-value: 3.55e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1555 MAIAVHSQTTAIPPCPQDWVSLWKGFSFIMFTSAGsEGAGQALASPGSCLEEFRASPFIECHGRGTCNYYSNSYSFWLAS 1634
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|...
gi 145699101 1635 lnPERMFRKPIPSTVKAGD-LEKIISRCQVCMK 1666
Cdd:pfam01413 80 --VEEQFRKPMSQTPKAGNeLRSYISRCVVCEA 110
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1444-1553 |
1.22e-57 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 194.53 E-value: 1.22e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1444 GFIFTRHSQTTAIPSCPEGTQPLYSGFSLLFVQGNKRAHGQDLGTLGSCLQRFTTMPFLFCNINNVCNFASRNDYSYWLS 1523
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80
|
90 100 110
....*....|....*....|....*....|....*
gi 145699101 1524 T-----PALMPMDMAPISGrALEPYISRCTVCEGP 1553
Cdd:smart00111 81 TiepsdQFTAPRPMTPKAG-DLRPYISRCQVCEKP 114
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1554-1666 |
2.31e-56 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 190.68 E-value: 2.31e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1554 AMAIAVHSQTTAIPPCPQDWVSLWKGFSFIMFTsAGSEGAGQALASPGSCLEEFRASPFIECHGRGTCNYYS-NSYSFWL 1632
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASrNDYSFWL 79
|
90 100 110
....*....|....*....|....*....|....
gi 145699101 1633 ASLNPERMFRKPIPSTVKAGDLEKIISRCQVCMK 1666
Cdd:smart00111 80 STIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEK 113
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
911-1186 |
3.21e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 98.82 E-value: 3.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 911 GQRGSLGIPGMKGEKGRPGAKGERGEKGKPGPSQTTLLKGDKGEPGLKGFVGNPGEKGNRGNPGLPGPKGLEGLPGLPGP 990
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 991 PGPRGDTGSRGNPGRPGPHGMPGSMGIMGVPGPKGRkgtsGLPGLAGRPGLTGIHGPQGDKGEPGysegarpgppgpkgd 1070
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD----GQQGPDGDPGPTGEDGPQGPDGPAG--------------- 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1071 pglpgDKGKKGERGVPGPPGQSGPAGPDGAPGSPGSPGHPGKPGPAGDLGLKGQKGFPGPPGSTGPPgppglpglpgpmg 1150
Cdd:NF038329 258 -----KDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKD------------- 319
|
250 260 270
....*....|....*....|....*....|....*.
gi 145699101 1151 mrGDQGRDGIPGPPGEKGETGllgaYPGPKgSPGVP 1186
Cdd:NF038329 320 --GQPGKDGLPGKDGKDGQPG----KPAPK-TPEVP 348
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
885-1115 |
7.52e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 97.67 E-value: 7.52e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 885 EKGEVGMMGYPGTTGPPGLPGKPGSQGQRGSLGIPGMKGEKGRPGAKGERGEKGKPGPSQTTLLKGDKGEPGLKGFVGNP 964
Cdd:NF038329 130 PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPA 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 965 GEKGNRGNPGLPGPkGLEGLPGLPGPPGPRGDTGSRGNPGRPGPHGMPGSMGIMGVPGPKGRKGTSGLPGLAGRPGLTGI 1044
Cdd:NF038329 210 GPAGPDGEAGPAGE-DGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGK 288
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 145699101 1045 HGPQGDKGEPGysegarpgppgpkgdpgLPGDKGKKGERGVPGPPGQSGPAGPDGAPGSPGSPGHPGKPGP 1115
Cdd:NF038329 289 DGQNGKDGLPG-----------------KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
968-1219 |
1.52e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 87.27 E-value: 1.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 968 GNRGNPGLPGPkgleglpglpgppgpRGDTGSRGNPGRPGPHGMPGSMGIMGVPGPKGRKGTSGLPGLAGRPGLTGIHGP 1047
Cdd:NF038329 117 GEKGEPGPAGP---------------AGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1048 QGDKGEPGysegarpgppgpkgdpglpgDKGKKGERGVPGPPGQSGPAGPDGAPGSPGSPGHPGKPGPAGDlglkGQKGF 1127
Cdd:NF038329 182 AGAKGPAG--------------------EKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD----GQQGP 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1128 PGPPGSTGPPGPPGLPGLPGPMGMRGDQGRDGIPGPPGEKGETGLLG--AYPGPKGSPGVPGAKGDRGVPGLSGLPGRKG 1205
Cdd:NF038329 238 DGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGpaGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
|
250
....*....|....
gi 145699101 1206 VMGDVGPQGPPGTA 1219
Cdd:NF038329 318 KDGQPGKDGLPGKD 331
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
286-563 |
9.44e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 78.79 E-value: 9.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 286 EKGAPGEPGPRGKPGKDGAPGFPGTEGAKGNRGFPGLRGEAGIKGRKGDIGPPGfpgpteyydaylEKGERGMPGLPGPK 365
Cdd:NF038329 136 PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAG------------EKGPQGPRGETGPA 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 366 GARgpqgpsgppgvpgspglsrpGLRGPIGWPGLKGSKGERGPPGKDTVGPPGPLGCpgspgppgppgppgcpgdivfkc 445
Cdd:NF038329 204 GEQ--------------------GPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD----------------------- 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 446 sPGEHGMPGDTGPPGVPGLDGPKGEPGSPctechcfpgppgvpgfpGLDGIKGIPGGRGVPGLKGNPGSPGSAGLPGFAG 525
Cdd:NF038329 241 -PGPTGEDGPQGPDGPAGKDGPRGDRGEA-----------------GPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302
|
250 260 270
....*....|....*....|....*....|....*...
gi 145699101 526 FPGDQGHPGLKGDKGDTPLPwGQVGNPGDPGLRGLPGR 563
Cdd:NF038329 303 KDGQNGKDGLPGKDGKDGQP-GKDGLPGKDGKDGQPGK 339
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1078-1427 |
9.31e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.71 E-value: 9.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1078 GKKGERGVPGPPGQSGPAGPDGAPGSPGSPGHPGKPGPAGDLGLKGQKgfpgppgstgppgppglpglpgpmgmrGDQGR 1157
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPA---------------------------GPQGE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1158 DGIPGPPGEKGETGLLGAyPGPKGSPGVPGAKGDRGVPGLSGLPGRKGVMGDVGPQGPPGTAGLpgppglpgaiipGPKG 1237
Cdd:NF038329 170 AGPQGPAGKDGEAGAKGP-AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD------------GQQG 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1238 DRGLPGLRGNPGEPGPPGPPGPIgkgikgdkgfmgppgpkglpgtvgdmgppgfpgapgtpglpGVRGDPGFPGFPGIKG 1317
Cdd:NF038329 237 PDGDPGPTGEDGPQGPDGPAGKD-----------------------------------------GPRGDRGEAGPDGPDG 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1318 EKGNPGFLGPighpgpvgpkgppgprgkpgtlkvislpgspgppgvpgqpgmKGDPGPLGLPGIPGPCGPRGKPGKDGKP 1397
Cdd:NF038329 276 KDGERGPVGP------------------------------------------AGKDGQNGKDGLPGKDGKDGQNGKDGLP 313
|
330 340 350
....*....|....*....|....*....|
gi 145699101 1398 GTPGPAGTKGNKGLKGQQGPPGLDGLPGLK 1427
Cdd:NF038329 314 GKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
59-365 |
1.62e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 71.86 E-value: 1.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 59 FPGQKGFPGPEGLPGPQGPKGSPGLPGLTGPKGIRGITGLPGfagppglpglpghpgPRGLAGLPGCNGSKGEQGFPGFP 138
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQG---------------ERGEKGPAGPQGEAGPQGPAGKD 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 139 GTPGYAGLPGPDGLKGQKGEPAQGEDRGfngkgdpgppgvpgfqgfpglpgfpgpagPPGPPGFFGLPGAMGPRGPKGHM 218
Cdd:NF038329 180 GEAGAKGPAGEKGPQGPRGETGPAGEQG-----------------------------PAGPAGPDGEAGPAGEDGPAGPA 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 219 GDSVIGQKGERGMKGLTGPPGppgtviftltqPYNKSDFKGEKGDegergepgppgpsgppgdsygseKGAPGEPGPRGK 298
Cdd:NF038329 231 GDGQQGPDGDPGPTGEDGPQG-----------PDGPAGKDGPRGD-----------------------RGEAGPDGPDGK 276
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 145699101 299 PGKDGAPGFPGTEGAKGNRGFPGLRGEAGIKGRKGDIGPPGFPGPTEYYDAYLEKGERGMPGLPGPK 365
Cdd:NF038329 277 DGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
673-979 |
7.60e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 69.55 E-value: 7.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 673 GLPGPVGKCDPGLPGPDGEPGipeagcpgppgPKGNQGFPGTKGSPGCPGEMGKPGRPGEPGIPGAKGEPS-VGRPGKPG 751
Cdd:NF038329 109 GLQQLKGDGEKGEPGPAGPAG-----------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGeAGPQGPAG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 752 KPGFPGERGNAGENGDiglpglpglpgtpgrggldgppgdpgqpgspgakgspgrciPGPRGTQGLPGLNGLKGQPGRRG 831
Cdd:NF038329 178 KDGEAGAKGPAGEKGP-----------------------------------------QGPRGETGPAGEQGPAGPAGPDG 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 832 DTGPKGDPGIPGMDrsgvpgdpgppgtpgCPGEMGPPGQKGYPGAPGFPGPPGEKGEVGMMGYPGTTGPPGLPGKPGSQG 911
Cdd:NF038329 217 EAGPAGEDGPAGPA---------------GDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERG 281
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 145699101 912 QRGSLGIPGMKGEKGRPGAKGERGEKGKPGpsqttlLKGDKGEPGLKGFVGNPGEKGNRGNPGLPGPK 979
Cdd:NF038329 282 PVGPAGKDGQNGKDGLPGKDGKDGQNGKDG------LPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1156-1436 |
5.04e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.77 E-value: 5.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1156 GRDGIPGPPGEKGETGLLGAyPGPKGSPGVPGAKGDRGVPGLSGLPGRKGVMGDVGPQGPPGTAglpgppglpgaiipGP 1235
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGP-RGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKD--------------GE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1236 KGDRGLPGLRGNPgepgppgppgpigkgikgdkgfmgppgpkglpgtvGDMGPPGFPGAPGTPGLPGVRGDPGFPGFPGI 1315
Cdd:NF038329 182 AGAKGPAGEKGPQ-----------------------------------GPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1316 KGEKGNpGFLGPIGHPGPVGPKGPPGPRGKPgtlkvislpgspgppgvpgqpgmkGDPGPLGLPGIPGPCGPRGKPGKDG 1395
Cdd:NF038329 227 AGPAGD-GQQGPDGDPGPTGEDGPQGPDGPA------------------------GKDGPRGDRGEAGPDGPDGKDGERG 281
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 145699101 1396 KPGTPGPAGTKGNKGLKGQQGPPGLDGLPGLKGNPGDRGTP 1436
Cdd:NF038329 282 PVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQP 322
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
508-763 |
1.08e-09 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 62.62 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 508 LKGNPGSPGSAGLPGFAGFPGDQGHPGLKGDKGDT--PLPWGQVGNPGDPGLRGLPGRKGFDGTPGGPGAKGPPGPQGEP 585
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAgpPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQ 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 586 ALSGRKGDQGPPGPPGFPGPPGPAGPAGPPGYGPQGEPGPKGAQGVPGVLGPPGEAGLKGEPststpdlgppgppGPPGQ 665
Cdd:NF038329 195 GPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPA-------------GKDGP 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 666 AGPRGLPGLPGPVGKcdPGLPGPDGEPGIPeagcpgppgpkgnqgfpGTKGSPGCPGEMGKPGRPGEPGIPGAKGEPsvG 745
Cdd:NF038329 262 RGDRGEAGPDGPDGK--DGERGPVGPAGKD-----------------GQNGKDGLPGKDGKDGQNGKDGLPGKDGKD--G 320
|
250
....*....|....*...
gi 145699101 746 RPGKPGKPGFPGERGNAG 763
Cdd:NF038329 321 QPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
352-585 |
2.82e-09 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 61.46 E-value: 2.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 352 EKGERGMPGLPGPKGARGPQGPSGPPGVPGSPGLSRP-GLRGPIGWPGLKGSKGERGPPGKDtvgppgplgcpgspGPPG 430
Cdd:NF038329 118 EKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPqGERGEKGPAGPQGEAGPQGPAGKD--------------GEAG 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 431 PPGPPGCPGDIVFKCSPGEHGMPGDTGPPGVPGLDGPKGEPGSPCTECHCFPGPPGVPGFPGLDGIKGIPGGRGVPGLKG 510
Cdd:NF038329 184 AKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRG 263
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 145699101 511 NPGSPGSAGLPGFAGFPGDQGHPGLKGDKGDTPLPwGQVGNPGDPGLRGLPGRKGFDGTPGGPGAKGPPGPQGEP 585
Cdd:NF038329 264 DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLP-GKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQP 337
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
586-845 |
5.93e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 57.22 E-value: 5.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 586 ALSGRKGDQGPpgppgfpgppgpagpagppgygpqgepgpKGAQGVPGVLGPPGEAGLKGEPststpdlgppGPPGPPGQ 665
Cdd:NF038329 114 KGDGEKGEPGP-----------------------------AGPAGPAGEQGPRGDRGETGPA----------GPAGPPGP 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 666 AGPRGLPGLPGPVGKCDP-GLPGPDGEPGIPEAGCPGPPGPKGNQGFP-GTKGSPGCPGEMGKPGRPGEPGIPGAKGEPS 743
Cdd:NF038329 155 QGERGEKGPAGPQGEAGPqGPAGKDGEAGAKGPAGEKGPQGPRGETGPaGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 744 VGRPGKPGKPGFPGERGNAGENGDIGLPGLPGLPGTPGRGGLDGPPGDPGQPGSPGAKGSPGrcIPGPRGTQGLPGLNGL 823
Cdd:NF038329 235 QGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDG--LPGKDGKDGQNGKDGL 312
|
250 260
....*....|....*....|..
gi 145699101 824 KGQPGRRGDTGPKGDPGIPGMD 845
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKD 334
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1380-1436 |
1.52e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 44.02 E-value: 1.52e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 145699101 1380 GIPGPCGPRGKPGKDGKPGTPGPAGTKGNKGLKGQQGPPGLDGLPGLKGNPGDRGTP 1436
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
399-567 |
2.98e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 48.36 E-value: 2.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 399 LKGSKGERGPPGkdtvgPPGPLGCPGSPGPPGPPGPPGCPGDIVFKCSPGEHGMPGDTGPPGVPGLDGPKGEPGSpctec 478
Cdd:NF038329 115 GDGEKGEPGPAG-----PAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA----- 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 479 HCFPGPPGVPGFPGLDGIKGIPGGRGVPGLKGNPGSPGSAGLPGFAGfPGDQGHPGLKGDKGDTPlPWGQVGNPGDPGLR 558
Cdd:NF038329 185 KGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDG-PQGPDGPAGKDGPR 262
|
....*....
gi 145699101 559 GLPGRKGFD 567
Cdd:NF038329 263 GDRGEAGPD 271
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
286-339 |
1.03e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 41.71 E-value: 1.03e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 145699101 286 EKGAPGEPGPRGKPGKDGAPGFPGTEGAKGNRGFPGLRGEAGIKGRKGDIGPPG 339
Cdd:pfam01391 2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
42-94 |
5.19e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 5.19e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 145699101 42 AGTKGEKGEKGVPGSPGFPGQKGFPGPEGLPGPQGPKGSPGLPGLTGPKGIRG 94
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1076-1117 |
1.83e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.86 E-value: 1.83e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 145699101 1076 DKGKKGERGVPGPPGQSGPAGPDGAPGSPGSPGHPGKPGPAG 1117
Cdd:pfam01391 14 PPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1445-1551 |
4.00e-62 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 207.06 E-value: 4.00e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1445 FIFTRHSQTTAIPSCPEGTQPLYSGFSLLFVQGNKRAHGQDLGTLGSCLQRFTTMPFLFCNINNVCNFASrNDYSYWLST 1524
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|
gi 145699101 1525 PAL---MPMDMAPISGRALEPYISRCTVCE 1551
Cdd:pfam01413 80 VEEqfrKPMSQTPKAGNELRSYISRCVVCE 109
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1555-1666 |
3.55e-60 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 201.67 E-value: 3.55e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1555 MAIAVHSQTTAIPPCPQDWVSLWKGFSFIMFTSAGsEGAGQALASPGSCLEEFRASPFIECHGRGTCNYYSNSYSFWLAS 1634
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|...
gi 145699101 1635 lnPERMFRKPIPSTVKAGD-LEKIISRCQVCMK 1666
Cdd:pfam01413 80 --VEEQFRKPMSQTPKAGNeLRSYISRCVVCEA 110
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1444-1553 |
1.22e-57 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 194.53 E-value: 1.22e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1444 GFIFTRHSQTTAIPSCPEGTQPLYSGFSLLFVQGNKRAHGQDLGTLGSCLQRFTTMPFLFCNINNVCNFASRNDYSYWLS 1523
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80
|
90 100 110
....*....|....*....|....*....|....*
gi 145699101 1524 T-----PALMPMDMAPISGrALEPYISRCTVCEGP 1553
Cdd:smart00111 81 TiepsdQFTAPRPMTPKAG-DLRPYISRCQVCEKP 114
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1554-1666 |
2.31e-56 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 190.68 E-value: 2.31e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1554 AMAIAVHSQTTAIPPCPQDWVSLWKGFSFIMFTsAGSEGAGQALASPGSCLEEFRASPFIECHGRGTCNYYS-NSYSFWL 1632
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASrNDYSFWL 79
|
90 100 110
....*....|....*....|....*....|....
gi 145699101 1633 ASLNPERMFRKPIPSTVKAGDLEKIISRCQVCMK 1666
Cdd:smart00111 80 STIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEK 113
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
911-1186 |
3.21e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 98.82 E-value: 3.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 911 GQRGSLGIPGMKGEKGRPGAKGERGEKGKPGPSQTTLLKGDKGEPGLKGFVGNPGEKGNRGNPGLPGPKGLEGLPGLPGP 990
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 991 PGPRGDTGSRGNPGRPGPHGMPGSMGIMGVPGPKGRkgtsGLPGLAGRPGLTGIHGPQGDKGEPGysegarpgppgpkgd 1070
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD----GQQGPDGDPGPTGEDGPQGPDGPAG--------------- 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1071 pglpgDKGKKGERGVPGPPGQSGPAGPDGAPGSPGSPGHPGKPGPAGDLGLKGQKGFPGPPGSTGPPgppglpglpgpmg 1150
Cdd:NF038329 258 -----KDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKD------------- 319
|
250 260 270
....*....|....*....|....*....|....*.
gi 145699101 1151 mrGDQGRDGIPGPPGEKGETGllgaYPGPKgSPGVP 1186
Cdd:NF038329 320 --GQPGKDGLPGKDGKDGQPG----KPAPK-TPEVP 348
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
885-1115 |
7.52e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 97.67 E-value: 7.52e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 885 EKGEVGMMGYPGTTGPPGLPGKPGSQGQRGSLGIPGMKGEKGRPGAKGERGEKGKPGPSQTTLLKGDKGEPGLKGFVGNP 964
Cdd:NF038329 130 PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPA 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 965 GEKGNRGNPGLPGPkGLEGLPGLPGPPGPRGDTGSRGNPGRPGPHGMPGSMGIMGVPGPKGRKGTSGLPGLAGRPGLTGI 1044
Cdd:NF038329 210 GPAGPDGEAGPAGE-DGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGK 288
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 145699101 1045 HGPQGDKGEPGysegarpgppgpkgdpgLPGDKGKKGERGVPGPPGQSGPAGPDGAPGSPGSPGHPGKPGP 1115
Cdd:NF038329 289 DGQNGKDGLPG-----------------KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
968-1219 |
1.52e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 87.27 E-value: 1.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 968 GNRGNPGLPGPkgleglpglpgppgpRGDTGSRGNPGRPGPHGMPGSMGIMGVPGPKGRKGTSGLPGLAGRPGLTGIHGP 1047
Cdd:NF038329 117 GEKGEPGPAGP---------------AGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1048 QGDKGEPGysegarpgppgpkgdpglpgDKGKKGERGVPGPPGQSGPAGPDGAPGSPGSPGHPGKPGPAGDlglkGQKGF 1127
Cdd:NF038329 182 AGAKGPAG--------------------EKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD----GQQGP 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1128 PGPPGSTGPPGPPGLPGLPGPMGMRGDQGRDGIPGPPGEKGETGLLG--AYPGPKGSPGVPGAKGDRGVPGLSGLPGRKG 1205
Cdd:NF038329 238 DGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGpaGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
|
250
....*....|....
gi 145699101 1206 VMGDVGPQGPPGTA 1219
Cdd:NF038329 318 KDGQPGKDGLPGKD 331
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
286-563 |
9.44e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 78.79 E-value: 9.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 286 EKGAPGEPGPRGKPGKDGAPGFPGTEGAKGNRGFPGLRGEAGIKGRKGDIGPPGfpgpteyydaylEKGERGMPGLPGPK 365
Cdd:NF038329 136 PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAG------------EKGPQGPRGETGPA 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 366 GARgpqgpsgppgvpgspglsrpGLRGPIGWPGLKGSKGERGPPGKDTVGPPGPLGCpgspgppgppgppgcpgdivfkc 445
Cdd:NF038329 204 GEQ--------------------GPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD----------------------- 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 446 sPGEHGMPGDTGPPGVPGLDGPKGEPGSPctechcfpgppgvpgfpGLDGIKGIPGGRGVPGLKGNPGSPGSAGLPGFAG 525
Cdd:NF038329 241 -PGPTGEDGPQGPDGPAGKDGPRGDRGEA-----------------GPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302
|
250 260 270
....*....|....*....|....*....|....*...
gi 145699101 526 FPGDQGHPGLKGDKGDTPLPwGQVGNPGDPGLRGLPGR 563
Cdd:NF038329 303 KDGQNGKDGLPGKDGKDGQP-GKDGLPGKDGKDGQPGK 339
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1078-1427 |
9.31e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.71 E-value: 9.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1078 GKKGERGVPGPPGQSGPAGPDGAPGSPGSPGHPGKPGPAGDLGLKGQKgfpgppgstgppgppglpglpgpmgmrGDQGR 1157
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPA---------------------------GPQGE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1158 DGIPGPPGEKGETGLLGAyPGPKGSPGVPGAKGDRGVPGLSGLPGRKGVMGDVGPQGPPGTAGLpgppglpgaiipGPKG 1237
Cdd:NF038329 170 AGPQGPAGKDGEAGAKGP-AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD------------GQQG 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1238 DRGLPGLRGNPGEPGPPGPPGPIgkgikgdkgfmgppgpkglpgtvgdmgppgfpgapgtpglpGVRGDPGFPGFPGIKG 1317
Cdd:NF038329 237 PDGDPGPTGEDGPQGPDGPAGKD-----------------------------------------GPRGDRGEAGPDGPDG 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1318 EKGNPGFLGPighpgpvgpkgppgprgkpgtlkvislpgspgppgvpgqpgmKGDPGPLGLPGIPGPCGPRGKPGKDGKP 1397
Cdd:NF038329 276 KDGERGPVGP------------------------------------------AGKDGQNGKDGLPGKDGKDGQNGKDGLP 313
|
330 340 350
....*....|....*....|....*....|
gi 145699101 1398 GTPGPAGTKGNKGLKGQQGPPGLDGLPGLK 1427
Cdd:NF038329 314 GKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
59-365 |
1.62e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 71.86 E-value: 1.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 59 FPGQKGFPGPEGLPGPQGPKGSPGLPGLTGPKGIRGITGLPGfagppglpglpghpgPRGLAGLPGCNGSKGEQGFPGFP 138
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQG---------------ERGEKGPAGPQGEAGPQGPAGKD 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 139 GTPGYAGLPGPDGLKGQKGEPAQGEDRGfngkgdpgppgvpgfqgfpglpgfpgpagPPGPPGFFGLPGAMGPRGPKGHM 218
Cdd:NF038329 180 GEAGAKGPAGEKGPQGPRGETGPAGEQG-----------------------------PAGPAGPDGEAGPAGEDGPAGPA 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 219 GDSVIGQKGERGMKGLTGPPGppgtviftltqPYNKSDFKGEKGDegergepgppgpsgppgdsygseKGAPGEPGPRGK 298
Cdd:NF038329 231 GDGQQGPDGDPGPTGEDGPQG-----------PDGPAGKDGPRGD-----------------------RGEAGPDGPDGK 276
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 145699101 299 PGKDGAPGFPGTEGAKGNRGFPGLRGEAGIKGRKGDIGPPGFPGPTEYYDAYLEKGERGMPGLPGPK 365
Cdd:NF038329 277 DGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
673-979 |
7.60e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 69.55 E-value: 7.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 673 GLPGPVGKCDPGLPGPDGEPGipeagcpgppgPKGNQGFPGTKGSPGCPGEMGKPGRPGEPGIPGAKGEPS-VGRPGKPG 751
Cdd:NF038329 109 GLQQLKGDGEKGEPGPAGPAG-----------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGeAGPQGPAG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 752 KPGFPGERGNAGENGDiglpglpglpgtpgrggldgppgdpgqpgspgakgspgrciPGPRGTQGLPGLNGLKGQPGRRG 831
Cdd:NF038329 178 KDGEAGAKGPAGEKGP-----------------------------------------QGPRGETGPAGEQGPAGPAGPDG 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 832 DTGPKGDPGIPGMDrsgvpgdpgppgtpgCPGEMGPPGQKGYPGAPGFPGPPGEKGEVGMMGYPGTTGPPGLPGKPGSQG 911
Cdd:NF038329 217 EAGPAGEDGPAGPA---------------GDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERG 281
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 145699101 912 QRGSLGIPGMKGEKGRPGAKGERGEKGKPGpsqttlLKGDKGEPGLKGFVGNPGEKGNRGNPGLPGPK 979
Cdd:NF038329 282 PVGPAGKDGQNGKDGLPGKDGKDGQNGKDG------LPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1156-1436 |
5.04e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.77 E-value: 5.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1156 GRDGIPGPPGEKGETGLLGAyPGPKGSPGVPGAKGDRGVPGLSGLPGRKGVMGDVGPQGPPGTAglpgppglpgaiipGP 1235
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGP-RGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKD--------------GE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1236 KGDRGLPGLRGNPgepgppgppgpigkgikgdkgfmgppgpkglpgtvGDMGPPGFPGAPGTPGLPGVRGDPGFPGFPGI 1315
Cdd:NF038329 182 AGAKGPAGEKGPQ-----------------------------------GPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 1316 KGEKGNpGFLGPIGHPGPVGPKGPPGPRGKPgtlkvislpgspgppgvpgqpgmkGDPGPLGLPGIPGPCGPRGKPGKDG 1395
Cdd:NF038329 227 AGPAGD-GQQGPDGDPGPTGEDGPQGPDGPA------------------------GKDGPRGDRGEAGPDGPDGKDGERG 281
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 145699101 1396 KPGTPGPAGTKGNKGLKGQQGPPGLDGLPGLKGNPGDRGTP 1436
Cdd:NF038329 282 PVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQP 322
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
508-763 |
1.08e-09 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 62.62 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 508 LKGNPGSPGSAGLPGFAGFPGDQGHPGLKGDKGDT--PLPWGQVGNPGDPGLRGLPGRKGFDGTPGGPGAKGPPGPQGEP 585
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAgpPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQ 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 586 ALSGRKGDQGPPGPPGFPGPPGPAGPAGPPGYGPQGEPGPKGAQGVPGVLGPPGEAGLKGEPststpdlgppgppGPPGQ 665
Cdd:NF038329 195 GPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPA-------------GKDGP 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 666 AGPRGLPGLPGPVGKcdPGLPGPDGEPGIPeagcpgppgpkgnqgfpGTKGSPGCPGEMGKPGRPGEPGIPGAKGEPsvG 745
Cdd:NF038329 262 RGDRGEAGPDGPDGK--DGERGPVGPAGKD-----------------GQNGKDGLPGKDGKDGQNGKDGLPGKDGKD--G 320
|
250
....*....|....*...
gi 145699101 746 RPGKPGKPGFPGERGNAG 763
Cdd:NF038329 321 QPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
352-585 |
2.82e-09 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 61.46 E-value: 2.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 352 EKGERGMPGLPGPKGARGPQGPSGPPGVPGSPGLSRP-GLRGPIGWPGLKGSKGERGPPGKDtvgppgplgcpgspGPPG 430
Cdd:NF038329 118 EKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPqGERGEKGPAGPQGEAGPQGPAGKD--------------GEAG 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 431 PPGPPGCPGDIVFKCSPGEHGMPGDTGPPGVPGLDGPKGEPGSPCTECHCFPGPPGVPGFPGLDGIKGIPGGRGVPGLKG 510
Cdd:NF038329 184 AKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRG 263
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 145699101 511 NPGSPGSAGLPGFAGFPGDQGHPGLKGDKGDTPLPwGQVGNPGDPGLRGLPGRKGFDGTPGGPGAKGPPGPQGEP 585
Cdd:NF038329 264 DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLP-GKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQP 337
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
586-845 |
5.93e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 57.22 E-value: 5.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 586 ALSGRKGDQGPpgppgfpgppgpagpagppgygpqgepgpKGAQGVPGVLGPPGEAGLKGEPststpdlgppGPPGPPGQ 665
Cdd:NF038329 114 KGDGEKGEPGP-----------------------------AGPAGPAGEQGPRGDRGETGPA----------GPAGPPGP 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 666 AGPRGLPGLPGPVGKCDP-GLPGPDGEPGIPEAGCPGPPGPKGNQGFP-GTKGSPGCPGEMGKPGRPGEPGIPGAKGEPS 743
Cdd:NF038329 155 QGERGEKGPAGPQGEAGPqGPAGKDGEAGAKGPAGEKGPQGPRGETGPaGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 744 VGRPGKPGKPGFPGERGNAGENGDIGLPGLPGLPGTPGRGGLDGPPGDPGQPGSPGAKGSPGrcIPGPRGTQGLPGLNGL 823
Cdd:NF038329 235 QGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDG--LPGKDGKDGQNGKDGL 312
|
250 260
....*....|....*....|..
gi 145699101 824 KGQPGRRGDTGPKGDPGIPGMD 845
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKD 334
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1380-1436 |
1.52e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 44.02 E-value: 1.52e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 145699101 1380 GIPGPCGPRGKPGKDGKPGTPGPAGTKGNKGLKGQQGPPGLDGLPGLKGNPGDRGTP 1436
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
399-567 |
2.98e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 48.36 E-value: 2.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 399 LKGSKGERGPPGkdtvgPPGPLGCPGSPGPPGPPGPPGCPGDIVFKCSPGEHGMPGDTGPPGVPGLDGPKGEPGSpctec 478
Cdd:NF038329 115 GDGEKGEPGPAG-----PAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA----- 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145699101 479 HCFPGPPGVPGFPGLDGIKGIPGGRGVPGLKGNPGSPGSAGLPGFAGfPGDQGHPGLKGDKGDTPlPWGQVGNPGDPGLR 558
Cdd:NF038329 185 KGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDG-PQGPDGPAGKDGPR 262
|
....*....
gi 145699101 559 GLPGRKGFD 567
Cdd:NF038329 263 GDRGEAGPD 271
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
286-339 |
1.03e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 41.71 E-value: 1.03e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 145699101 286 EKGAPGEPGPRGKPGKDGAPGFPGTEGAKGNRGFPGLRGEAGIKGRKGDIGPPG 339
Cdd:pfam01391 2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
288-343 |
1.20e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 41.33 E-value: 1.20e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 145699101 288 GAPGEPGPRGKPGKDGAPGFPGTEGAKGNRGFPGLRGEAGIKGRKGDIGPPGFPGP 343
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
42-94 |
5.19e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 5.19e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 145699101 42 AGTKGEKGEKGVPGSPGFPGQKGFPGPEGLPGPQGPKGSPGLPGLTGPKGIRG 94
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
49-100 |
6.83e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 6.83e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 145699101 49 GEKGVPGSPGFPGQKGFPGPEGLPGPQGPKGSPGLPGLTGPKGIRGITGLPG 100
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPG 52
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1076-1117 |
1.83e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.86 E-value: 1.83e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 145699101 1076 DKGKKGERGVPGPPGQSGPAGPDGAPGSPGSPGHPGKPGPAG 1117
Cdd:pfam01391 14 PPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1369-1419 |
5.79e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 36.70 E-value: 5.79e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 145699101 1369 MKGDPGPLGLPGIPGPCGPRGKPGKDGKPGTPGPAGTKGNKGLKGQQGPPG 1419
Cdd:pfam01391 5 PPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
42-89 |
6.02e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 36.70 E-value: 6.02e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 145699101 42 AGTKGEKGEKGVPGSPGFPGQKGFPGPEGLPGPQGPKGSPGLPGLTGP 89
Cdd:pfam01391 9 PGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| |
