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Conserved domains on  [gi|2028695436|ref|NP_001381410|]
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protein KRBA1 isoform 6 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KRAB_A-box cd07765
KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression ...
 7-45 1.50e-18

KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression module, found in a subgroup of the zinc finger proteins (ZFPs) of the C2H2 family, KRAB-ZFPs. KRAB-ZFPs comprise the largest group of transcriptional regulators in mammals, and are only found in tetrapods. These proteins have been shown to play important roles in cell differentiation and organ development, and in regulating viral replication and transcription. A KRAB domain may consist of an A-box, or of an A-box plus either a B-box, a divergent B-box (b), or a C-box. Only the A-box is included in this model. The A-box is needed for repression, the B- and C- boxes are not. KRAB-ZFPs have one or two KRAB domains at their amino-terminal end, and multiple C2H2 zinc finger motifs at their C-termini. Some KRAB-ZFPs also contain a SCAN domain which mediates homo- and hetero-oligomerization. The KRAB domain is a protein-protein interaction module which represses transcription through recruiting corepressors. A key mechanism appears to be the following: KRAB-AFPs tethered to DNA recruit, via their KRAB domain, the repressor KAP1 (KRAB-associated protein-1, also known as transcription intermediary factor 1 beta , KRAB-A interacting protein , and tripartite motif protein 28). The KAP1/ KRAB-AFP complex in turn recruits the heterochromatin protein 1 (HP1) family, and other chromatin modulating proteins, leading to transcriptional repression through heterochromatin formation.


:

Pssm-ID: 143639  Cd Length: 40  Bit Score: 79.90  E-value: 1.50e-18
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 2028695436    7 ITFKDLAVRFSEEEWRLLEEGQREFYRDVMRENYETLVS 45
Cdd:cd07765      1 VTFEDVAVYFSQEEWELLDPAQRDLYRDVMLENYENLVS 39
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 214-256 7.19e-09

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


:

Pssm-ID: 464615  Cd Length: 44  Bit Score: 52.41  E-value: 7.19e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 2028695436  214 GTSEAGISPGNSPLQGLINCLKEILVPGPRHPETSPSFLPPLP 256
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQPATSLSPPPQ 43
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 113-542 5.31e-04

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 5.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  113 ASLDGERASPEAAAREPCPLRGLLSCLPDGPtSQPHLATTPTDSScssGPTGDGVQGSPLPIKTA--DKPWPTRKEGPGA 190
Cdd:PHA03247  2562 AAPDRSVPPPRPAPRPSEPAVTSRARRPDAP-PQSARPRAPVDDR---GDPRGPAPPSPLPPDTHapDPPPPSPSPAANE 2637

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  191 LGG--------------EPSPPTHSPSRRKSHRGQERGTSEAGISPGNSPLQGLINCLKEILVPGPRHPETSPSFLPPLP 256
Cdd:PHA03247  2638 PDPhppptvppperprdDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVS 2717

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  257 SLGTSRLTRADLGPGSPPWAVKTEAVSGDCPLqgllhcLKELPEAQDRHPSPSGvgnrrlQENPGAWKRGSGGPGYLLTP 336
Cdd:PHA03247  2718 ATPLPPGPAAARQASPALPAAPAPPAVPAGPA------TPGGPARPARPPTTAG------PPAPAPPAAPAAGPPRRLTR 2785

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  337 PPhpdlgAGGLLSVKMENSWVQSPPGPASCQPGRQPLSPSATGDTRGVPQPSwGPEAQAASASSSPLEALEACLKGIPPN 416
Cdd:PHA03247  2786 PA-----VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT-SAQPTAPPPPPGPPPPSLPLGGSVAPG 2859

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  417 GS----SPSQLPPTSCSQNPQPGDSRSQKPELQPHRSHSEEATREPVLPLGLQSCVRDGPSRPLAPRGTPTSFSSSSSTD 492
Cdd:PHA03247  2860 GDvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2028695436  493 wdldfGSPVGNQGQHPGKGSPPGSSPLQGLENCLK-EIPVPVLRPAWPCSS 542
Cdd:PHA03247  2940 -----QPPLAPTTDPAGAGEPSGAVPQPWLGALVPgRVAVPRFRVPQPAPS 2985
 
Name Accession Description Interval E-value
KRAB_A-box cd07765
KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression ...
 7-45 1.50e-18

KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression module, found in a subgroup of the zinc finger proteins (ZFPs) of the C2H2 family, KRAB-ZFPs. KRAB-ZFPs comprise the largest group of transcriptional regulators in mammals, and are only found in tetrapods. These proteins have been shown to play important roles in cell differentiation and organ development, and in regulating viral replication and transcription. A KRAB domain may consist of an A-box, or of an A-box plus either a B-box, a divergent B-box (b), or a C-box. Only the A-box is included in this model. The A-box is needed for repression, the B- and C- boxes are not. KRAB-ZFPs have one or two KRAB domains at their amino-terminal end, and multiple C2H2 zinc finger motifs at their C-termini. Some KRAB-ZFPs also contain a SCAN domain which mediates homo- and hetero-oligomerization. The KRAB domain is a protein-protein interaction module which represses transcription through recruiting corepressors. A key mechanism appears to be the following: KRAB-AFPs tethered to DNA recruit, via their KRAB domain, the repressor KAP1 (KRAB-associated protein-1, also known as transcription intermediary factor 1 beta , KRAB-A interacting protein , and tripartite motif protein 28). The KAP1/ KRAB-AFP complex in turn recruits the heterochromatin protein 1 (HP1) family, and other chromatin modulating proteins, leading to transcriptional repression through heterochromatin formation.


Pssm-ID: 143639  Cd Length: 40  Bit Score: 79.90  E-value: 1.50e-18
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 2028695436    7 ITFKDLAVRFSEEEWRLLEEGQREFYRDVMRENYETLVS 45
Cdd:cd07765      1 VTFEDVAVYFSQEEWELLDPAQRDLYRDVMLENYENLVS 39
KRAB pfam01352
KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc ...
 6-46 2.17e-18

KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc finger proteins containing C2H2 fingers. The KRAB domain is found to be involved in protein-protein interactions. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B. The A box plays an important role in repression by binding to corepressors, while the B box is thought to enhance this repression brought about by the A box. KRAB-containing proteins are thought to have critical functions in cell proliferation and differentiation, apoptosis and neoplastic transformation.


Pssm-ID: 460171  Cd Length: 42  Bit Score: 79.44  E-value: 2.17e-18
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 2028695436    6 SITFKDLAVRFSEEEWRLLEEGQREFYRDVMRENYETLVSV 46
Cdd:pfam01352    1 SVTFEDVAVDFTQEEWALLDPAQRNLYRDVMLENYRNLVSL 41
KRAB smart00349
krueppel associated box;
8-48 2.59e-17

krueppel associated box;


Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 76.86  E-value: 2.59e-17
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 2028695436     8 TFKDLAVRFSEEEWRLLEEGQREFYRDVMRENYETLVSVEP 48
Cdd:smart00349    2 TFEDVAVYFTQEEWEQLDPAQKNLYRDVMLENYSNLVSLGF 42
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 214-256 7.19e-09

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 52.41  E-value: 7.19e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 2028695436  214 GTSEAGISPGNSPLQGLINCLKEILVPGPRHPETSPSFLPPLP 256
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQPATSLSPPPQ 43
PHA03247 PHA03247
large tegument protein UL36; Provisional
 113-542 5.31e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 5.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  113 ASLDGERASPEAAAREPCPLRGLLSCLPDGPtSQPHLATTPTDSScssGPTGDGVQGSPLPIKTA--DKPWPTRKEGPGA 190
Cdd:PHA03247  2562 AAPDRSVPPPRPAPRPSEPAVTSRARRPDAP-PQSARPRAPVDDR---GDPRGPAPPSPLPPDTHapDPPPPSPSPAANE 2637

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  191 LGG--------------EPSPPTHSPSRRKSHRGQERGTSEAGISPGNSPLQGLINCLKEILVPGPRHPETSPSFLPPLP 256
Cdd:PHA03247  2638 PDPhppptvppperprdDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVS 2717

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  257 SLGTSRLTRADLGPGSPPWAVKTEAVSGDCPLqgllhcLKELPEAQDRHPSPSGvgnrrlQENPGAWKRGSGGPGYLLTP 336
Cdd:PHA03247  2718 ATPLPPGPAAARQASPALPAAPAPPAVPAGPA------TPGGPARPARPPTTAG------PPAPAPPAAPAAGPPRRLTR 2785

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  337 PPhpdlgAGGLLSVKMENSWVQSPPGPASCQPGRQPLSPSATGDTRGVPQPSwGPEAQAASASSSPLEALEACLKGIPPN 416
Cdd:PHA03247  2786 PA-----VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT-SAQPTAPPPPPGPPPPSLPLGGSVAPG 2859

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  417 GS----SPSQLPPTSCSQNPQPGDSRSQKPELQPHRSHSEEATREPVLPLGLQSCVRDGPSRPLAPRGTPTSFSSSSSTD 492
Cdd:PHA03247  2860 GDvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2028695436  493 wdldfGSPVGNQGQHPGKGSPPGSSPLQGLENCLK-EIPVPVLRPAWPCSS 542
Cdd:PHA03247  2940 -----QPPLAPTTDPAGAGEPSGAVPQPWLGALVPgRVAVPRFRVPQPAPS 2985
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 390-434 1.06e-03

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 37.78  E-value: 1.06e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 2028695436  390 GPEAQAASASSSPLEALEACLKGIPPNGSSPSQlPPTSCSQNPQP 434
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQ-PATSLSPPPQP 44
 
Name Accession Description Interval E-value
KRAB_A-box cd07765
KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression ...
 7-45 1.50e-18

KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression module, found in a subgroup of the zinc finger proteins (ZFPs) of the C2H2 family, KRAB-ZFPs. KRAB-ZFPs comprise the largest group of transcriptional regulators in mammals, and are only found in tetrapods. These proteins have been shown to play important roles in cell differentiation and organ development, and in regulating viral replication and transcription. A KRAB domain may consist of an A-box, or of an A-box plus either a B-box, a divergent B-box (b), or a C-box. Only the A-box is included in this model. The A-box is needed for repression, the B- and C- boxes are not. KRAB-ZFPs have one or two KRAB domains at their amino-terminal end, and multiple C2H2 zinc finger motifs at their C-termini. Some KRAB-ZFPs also contain a SCAN domain which mediates homo- and hetero-oligomerization. The KRAB domain is a protein-protein interaction module which represses transcription through recruiting corepressors. A key mechanism appears to be the following: KRAB-AFPs tethered to DNA recruit, via their KRAB domain, the repressor KAP1 (KRAB-associated protein-1, also known as transcription intermediary factor 1 beta , KRAB-A interacting protein , and tripartite motif protein 28). The KAP1/ KRAB-AFP complex in turn recruits the heterochromatin protein 1 (HP1) family, and other chromatin modulating proteins, leading to transcriptional repression through heterochromatin formation.


Pssm-ID: 143639  Cd Length: 40  Bit Score: 79.90  E-value: 1.50e-18
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 2028695436    7 ITFKDLAVRFSEEEWRLLEEGQREFYRDVMRENYETLVS 45
Cdd:cd07765      1 VTFEDVAVYFSQEEWELLDPAQRDLYRDVMLENYENLVS 39
KRAB pfam01352
KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc ...
 6-46 2.17e-18

KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc finger proteins containing C2H2 fingers. The KRAB domain is found to be involved in protein-protein interactions. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B. The A box plays an important role in repression by binding to corepressors, while the B box is thought to enhance this repression brought about by the A box. KRAB-containing proteins are thought to have critical functions in cell proliferation and differentiation, apoptosis and neoplastic transformation.


Pssm-ID: 460171  Cd Length: 42  Bit Score: 79.44  E-value: 2.17e-18
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 2028695436    6 SITFKDLAVRFSEEEWRLLEEGQREFYRDVMRENYETLVSV 46
Cdd:pfam01352    1 SVTFEDVAVDFTQEEWALLDPAQRNLYRDVMLENYRNLVSL 41
KRAB smart00349
krueppel associated box;
8-48 2.59e-17

krueppel associated box;


Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 76.86  E-value: 2.59e-17
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 2028695436     8 TFKDLAVRFSEEEWRLLEEGQREFYRDVMRENYETLVSVEP 48
Cdd:smart00349    2 TFEDVAVYFTQEEWEQLDPAQKNLYRDVMLENYSNLVSLGF 42
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 214-256 7.19e-09

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 52.41  E-value: 7.19e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 2028695436  214 GTSEAGISPGNSPLQGLINCLKEILVPGPRHPETSPSFLPPLP 256
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQPATSLSPPPQ 43
PHA03247 PHA03247
large tegument protein UL36; Provisional
 113-542 5.31e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 5.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  113 ASLDGERASPEAAAREPCPLRGLLSCLPDGPtSQPHLATTPTDSScssGPTGDGVQGSPLPIKTA--DKPWPTRKEGPGA 190
Cdd:PHA03247  2562 AAPDRSVPPPRPAPRPSEPAVTSRARRPDAP-PQSARPRAPVDDR---GDPRGPAPPSPLPPDTHapDPPPPSPSPAANE 2637

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  191 LGG--------------EPSPPTHSPSRRKSHRGQERGTSEAGISPGNSPLQGLINCLKEILVPGPRHPETSPSFLPPLP 256
Cdd:PHA03247  2638 PDPhppptvppperprdDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVS 2717

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  257 SLGTSRLTRADLGPGSPPWAVKTEAVSGDCPLqgllhcLKELPEAQDRHPSPSGvgnrrlQENPGAWKRGSGGPGYLLTP 336
Cdd:PHA03247  2718 ATPLPPGPAAARQASPALPAAPAPPAVPAGPA------TPGGPARPARPPTTAG------PPAPAPPAAPAAGPPRRLTR 2785

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  337 PPhpdlgAGGLLSVKMENSWVQSPPGPASCQPGRQPLSPSATGDTRGVPQPSwGPEAQAASASSSPLEALEACLKGIPPN 416
Cdd:PHA03247  2786 PA-----VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT-SAQPTAPPPPPGPPPPSLPLGGSVAPG 2859

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  417 GS----SPSQLPPTSCSQNPQPGDSRSQKPELQPHRSHSEEATREPVLPLGLQSCVRDGPSRPLAPRGTPTSFSSSSSTD 492
Cdd:PHA03247  2860 GDvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2028695436  493 wdldfGSPVGNQGQHPGKGSPPGSSPLQGLENCLK-EIPVPVLRPAWPCSS 542
Cdd:PHA03247  2940 -----QPPLAPTTDPAGAGEPSGAVPQPWLGALVPgRVAVPRFRVPQPAPS 2985
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 390-434 1.06e-03

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 37.78  E-value: 1.06e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 2028695436  390 GPEAQAASASSSPLEALEACLKGIPPNGSSPSQlPPTSCSQNPQP 434
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQ-PATSLSPPPQP 44
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 511-542 1.58e-03

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 37.39  E-value: 1.58e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2028695436  511 GSPPGSSPLQGLENCLKEIPVPVLRPAWPCSS 542
Cdd:pfam15287    6 GASPGSSPLQGLINCLKEILVPGPQHPQPATS 37
PHA03247 PHA03247
large tegument protein UL36; Provisional
 105-427 4.26e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 4.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  105 SPESESRGASLDGERASPEAAAREPCPLRGLLSCLPDGPTSQPHLATTPTDSSCSSGPTGDGVQGSPLPIKTADKPWPTR 184
Cdd:PHA03247  2668 RRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG 2747

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  185 KEGPGALGGEPSPPTHS-PSRRKSHRGQERGTSEAGISPGNSPLQGLINCLKEILVPG-------PRHPETSPSFLP--P 254
Cdd:PHA03247  2748 PATPGGPARPARPPTTAgPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAdppaavlAPAAALPPAASPagP 2827

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  255 LPSLGTSRLTRADLGPGSPPWAVKTE---AVSGDCPLQGLLHCLKELPeAQDRHPSPSGVGNRRLQENPGAWKRGSGGPg 331
Cdd:PHA03247  2828 LPPPTSAQPTAPPPPPGPPPPSLPLGgsvAPGGDVRRRPPSRSPAAKP-AAPARPPVRRLARPAVSRSTESFALPPDQP- 2905

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028695436  332 yllTPPPHPDLGAGGLLSVKMEnswVQSPPGPASCQPGRQPLSPSATGDTRGVPQPSwGPEAQAASASSSPLEALEACLK 411
Cdd:PHA03247  2906 ---ERPPQPQAPPPPQPQPQPP---PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS-GAVPQPWLGALVPGRVAVPRFR 2978

                          330
                   ....*....|....*.
gi 2028695436  412 GIPPNGSSPSQLPPTS 427
Cdd:PHA03247  2979 VPQPAPSREAPASSTP 2994
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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