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Conserved domains on  [gi|1675175887|ref|NP_001357701|]
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uncharacterized protein LOC71162 isoform 1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
REM super family cl02520
Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also ...
 89-166 2.38e-08

Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.


The actual alignment was detected with superfamily member cd06224:

Pssm-ID: 470601  Cd Length: 122  Bit Score: 51.64  E-value: 2.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1675175887  89 LDIFVAMYRTYATTWEVLDLLMKTY--------ASFRTDCIEDQQTKSAIFSFLFGWFQKFPQDFYESPDLavLSQFTEY 160
Cdd:cd06224    21 VSTFLLTYRSFTTPTELLEKLIERYeiappenlEYNDWDKKKSKPIRLRVLNVLRTWVENYPYDFFDDEEL--LELLEEF 98


                  ....*.
gi 1675175887 161 VRLNVP 166
Cdd:cd06224    99 LNRLVQ 104
 
Name Accession Description Interval E-value
REM cd06224
Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also ...
 89-166 2.38e-08

Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.


Pssm-ID: 100121  Cd Length: 122  Bit Score: 51.64  E-value: 2.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1675175887  89 LDIFVAMYRTYATTWEVLDLLMKTY--------ASFRTDCIEDQQTKSAIFSFLFGWFQKFPQDFYESPDLavLSQFTEY 160
Cdd:cd06224    21 VSTFLLTYRSFTTPTELLEKLIERYeiappenlEYNDWDKKKSKPIRLRVLNVLRTWVENYPYDFFDDEEL--LELLEEF 98


                  ....*.
gi 1675175887 161 VRLNVP 166
Cdd:cd06224    99 LNRLVQ 104
RasGEF_N pfam00618
RasGEF N-terminal motif; A subset of guanine nucleotide exchange factor for Ras-like small ...
 89-159 7.89e-06

RasGEF N-terminal motif; A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this motif/domain N-terminal to the RasGef (Cdc25-like) domain.


Pssm-ID: 459873  Cd Length: 104  Bit Score: 43.83  E-value: 7.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1675175887  89 LDIFVAMYRTYATTWEVLDLLMKTY------ASFRTDCIEDQQT---KSAIFSFLFGWFQKFPQDFYESPDLavLSQFTE 159
Cdd:pfam00618  26 LSTFLLTYRSFTTPAELLELLIERYnippplDLSSDSYWISKKTlpiRIRVLSVLRHWVENYFSDFNDDPVL--LSRLEK 103
RasGEFN smart00229
Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif; A subset of guanine ...
 89-152 8.95e-06

Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif; A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).


Pssm-ID: 214571  Cd Length: 127  Bit Score: 44.25  E-value: 8.95e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1675175887   89 LDIFVAMYRTYATTWEVLDLLMKTY-----ASFRTDCIEDQQTKSAIFSFLFGWFQKFPQDFYESPDLA 152
Cdd:smart00229  29 VETFLLTYRSFITTQELLQLLLYRYnaippESWVEEKVNPRRVKNRVLNILRTWVENYWEDFEDDPKLI 97
 
Name Accession Description Interval E-value
REM cd06224
Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also ...
 89-166 2.38e-08

Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.


Pssm-ID: 100121  Cd Length: 122  Bit Score: 51.64  E-value: 2.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1675175887  89 LDIFVAMYRTYATTWEVLDLLMKTY--------ASFRTDCIEDQQTKSAIFSFLFGWFQKFPQDFYESPDLavLSQFTEY 160
Cdd:cd06224    21 VSTFLLTYRSFTTPTELLEKLIERYeiappenlEYNDWDKKKSKPIRLRVLNVLRTWVENYPYDFFDDEEL--LELLEEF 98


                  ....*.
gi 1675175887 161 VRLNVP 166
Cdd:cd06224    99 LNRLVQ 104
RasGEF_N pfam00618
RasGEF N-terminal motif; A subset of guanine nucleotide exchange factor for Ras-like small ...
 89-159 7.89e-06

RasGEF N-terminal motif; A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this motif/domain N-terminal to the RasGef (Cdc25-like) domain.


Pssm-ID: 459873  Cd Length: 104  Bit Score: 43.83  E-value: 7.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1675175887  89 LDIFVAMYRTYATTWEVLDLLMKTY------ASFRTDCIEDQQT---KSAIFSFLFGWFQKFPQDFYESPDLavLSQFTE 159
Cdd:pfam00618  26 LSTFLLTYRSFTTPAELLELLIERYnippplDLSSDSYWISKKTlpiRIRVLSVLRHWVENYFSDFNDDPVL--LSRLEK 103
RasGEFN smart00229
Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif; A subset of guanine ...
 89-152 8.95e-06

Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif; A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).


Pssm-ID: 214571  Cd Length: 127  Bit Score: 44.25  E-value: 8.95e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1675175887   89 LDIFVAMYRTYATTWEVLDLLMKTY-----ASFRTDCIEDQQTKSAIFSFLFGWFQKFPQDFYESPDLA 152
Cdd:smart00229  29 VETFLLTYRSFITTQELLQLLLYRYnaippESWVEEKVNPRRVKNRVLNILRTWVENYWEDFEDDPKLI 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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