|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
131-793 |
2.09e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 2.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 131 KRLQVTNPDLTQVVSLVVEREKQ----------------KSEAKDRKVLEIL----QVKDAKIQEFEQRESVLKQEINDL 190
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNELERQlkslerqaekaerykeLKAELRELELALLvlrlEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 191 VKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLV---IKNLEEENKKLSTRCTDLLNDLEKLRKQ 267
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILrerLANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 268 EAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQ----ELQNLYKQNST 343
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIErleaRLERLEDRRER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 344 HTAQQAELIQQLQVLNMDTQKV-----------LRNQEDVHTAESISYQKLYNELHICFETTKSNEAMLRQSVTNLQDQL 412
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAeleeleeeleeLQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 413 LQKEQENAKLKEKLQESQGAPLPLPQ-----ESDPDYSA----------------------------------------- 446
Cdd:TIGR02168 499 ENLEGFSEGVKALLKNQSGLSGILGVlseliSVDEGYEAaieaalggrlqavvvenlnaakkaiaflkqnelgrvtflpl 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 447 --------QVPHRPSLSSLETLMVSQKSEIEY--------------------LQEKLKIANE-KLSENISANKG--FSRK 495
Cdd:TIGR02168 579 dsikgteiQGNDREILKNIEGFLGVAKDLVKFdpklrkalsyllggvlvvddLDNALELAKKlRPGYRIVTLDGdlVRPG 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 496 SIMTSAEGKHKEPPVKRSRSLspkssftdsEEL-QKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYR 574
Cdd:TIGR02168 659 GVITGGSAKTNSSILERRREI---------EELeEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 575 AVKEQLKQWEEgsgmTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMI----QKMNLEEELDELKVHISIDKAAI 650
Cdd:TIGR02168 730 ALRKDLARLEA----EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaEIEELEAQIEQLKEELKALREAL 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 651 QELNRCVAERREEQL-FRSGEDDEVKRSTPEKNGKEMLEQTLQKVTElenRLKSFEKRSRKLKEGNKKLMKENDFLKSLL 729
Cdd:TIGR02168 806 DELRAELTLLNEEAAnLRERLESLERRIAATERRLEDLEEQIEELSE---DIESLAAEIEELEELIEELESELEALLNER 882
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1432257300 730 KQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELIN 793
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
142-791 |
1.35e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.79 E-value: 1.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 142 QVVSLVVEREKQKSEAKD-RKVLEILQVKDAKIQEfeqRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKfkdksq 220
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEElEREIEEERKRRDKLTE---EYAELKEELEDLRAELEEVDKEFAETRDELKDYREK------ 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 221 eikdtKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQ 300
Cdd:TIGR02169 394 -----LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 301 SKYNALSLQLSNKQTELIQKdmditlvRKELQELQnlykqnsthtaQQAELIQQLQVLNMDTQKVLR-NQEDVH--TAES 377
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKL-------QRELAEAE-----------AQARASEERVRGGRAVEEVLKaSIQGVHgtVAQL 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 378 ISYQKLYnelHICFETTKSNEamlrqsvtnLQDQLLQKEQENAKLKEKLQESQGAP---LPLPQESDPDYSAQVPHRPSL 454
Cdd:TIGR02169 531 GSVGERY---ATAIEVAAGNR---------LNNVVVEDDAVAKEAIELLKRRKAGRatfLPLNKMRDERRDLSILSEDGV 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 455 SSLETLMVSQKSEIEYLQeKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPP---VKRSRSLSPKSSFT--DSEELQ 529
Cdd:TIGR02169 599 IGFAVDLVEFDPKYEPAF-KYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSgamTGGSRAPRGGILFSrsEPAELQ 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 530 KLRKAERKIENLEKALQ--LKSQEN------DELRDAHEKRKE---RLQMLQTNYRAVKEQLKQWEEgsgmtEIRKIKRA 598
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQseLRRIENrldelsQELSDASRKIGEiekEIEQLEQEEEKLKERLEELEE-----DLSSLEQE 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 599 dpqqlrqedSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAI--QELNRCVAERREEQLFRSGEDDEVKR 676
Cdd:TIGR02169 753 ---------IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEiqAELSKLEEEVSRIEARLREIEQKLNR 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 677 STPEKNGKEMLEQTLQ-KVTELENRLKSFEKRsrkLKEGNKKLMKendfLKSLLKQQQEDTETREKELEQIIKGSKDVEK 755
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQeQRIDLKEQIKSIEKE---IENLNGKKEE----LEEELEELEAALRDLESRLGDLKKERDELEA 896
|
650 660 670
....*....|....*....|....*....|....*..
gi 1432257300 756 ENTELQVKISELETEVTSLRRQVAEANA-LRNENEEL 791
Cdd:TIGR02169 897 QLRELERKIEELEAQIEKKRKRLSELKAkLEALEEEL 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
154-748 |
2.70e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 2.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 154 KSEAKDRKVLEIL---QVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQ 230
Cdd:COG1196 219 KEELKELEAELLLlklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 231 NKEEQNRLV---IKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALS 307
Cdd:COG1196 299 RLEQDIARLeerRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 308 LQLSNKQTELIQKDMDITLVRKELQELQnlyKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLynel 387
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELE---EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE---- 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 388 hicfETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQE--SQGAPLPLPQESDPDYSAQVPhRPSLSSLETLMVSQK 465
Cdd:COG1196 452 ----AELEEEEEALLELLAELLEEAALLEAALAELLEELAEaaARLLLLLEAEADYEGFLEGVK-AALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 466 SEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKR-----SRSLSPKSSFTDSEELQKLRKAERKIEN 540
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRatflpLDKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 541 LEKALQLKSQ-------ENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWN 613
Cdd:COG1196 607 DLREADARYYvlgdtllGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 614 ELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEqtlqk 693
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD----- 761
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1432257300 694 VTELENRLKSFEKRSRKLKEGN-------KKLMKENDFLKSllkqQQEDTETREKELEQIIK 748
Cdd:COG1196 762 LEELERELERLEREIEALGPVNllaieeyEELEERYDFLSE----QREDLEEARETLEEAIE 819
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
241-808 |
4.10e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 4.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 241 KNLEEENKKLsTRCTDLLNDLEK-----------------LRKQEAHLRKEKYSTDakIKTFEDNLIEARKEVEVSQSKY 303
Cdd:TIGR02168 179 RKLERTRENL-DRLEDILNELERqlkslerqaekaerykeLKAELRELELALLVLR--LEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 304 NALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQnstHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKL 383
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYA---LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 384 ynelhicfETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDPDYSAQVPHRPSLSSLETLMVS 463
Cdd:TIGR02168 333 --------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 464 QKSEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRslspkssftDSEELQKLRKAERKIENLEK 543
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE---------LERLEEALEELREELEEAEQ 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 544 ALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGM---------------TEIRKIKRADPQQLRQEDS 608
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIlgvlselisvdegyeAAIEAALGGRLQAVVVENL 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 609 DAVWNELAYFKRENQ------------------ELMIQKMNLEEELDELKVHISIDKAA----------------IQELN 654
Cdd:TIGR02168 556 NAAKKAIAFLKQNELgrvtflpldsikgteiqgNDREILKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvvddLDNAL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 655 RCVAERREEQLF-------------RSGEDDEVKRSTPE-----KNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNK 716
Cdd:TIGR02168 636 ELAKKLRPGYRIvtldgdlvrpggvITGGSAKTNSSILErrreiEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 717 KLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPME 796
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
650
....*....|..
gi 1432257300 797 KSHQSADRAKSE 808
Cdd:TIGR02168 796 EELKALREALDE 807
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
525-783 |
4.82e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 4.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 525 SEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMT----------EIRK 594
Cdd:TIGR02169 226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigeleaEIAS 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 595 IKRA-DPQQLRQEDSDA-----------VWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERRE 662
Cdd:TIGR02169 306 LERSiAEKERELEDAEErlakleaeidkLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 663 EQLFRSGEDDEVKRSTPEKNGK-----EMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTE 737
Cdd:TIGR02169 386 ELKDYREKLEKLKREINELKREldrlqEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1432257300 738 TREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANA 783
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
528-805 |
7.06e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 7.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 528 LQKLRKAERKIENLEKALQLKSQENDELR---DAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQLR 604
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEaelAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 605 QEDSDAvwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRStpEKNGK 684
Cdd:COG1196 311 RRELEE---RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE--LEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 685 EMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKI 764
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1432257300 765 SELETEVTSLRRQVAEANALRNEN---EELINPMEKSHQSADRA 805
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAaarLLLLLEAEADYEGFLEG 509
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
450-797 |
1.41e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 450 HRPSLSSLETLMVSQKSEIEYLQEKLKIANEKLSEnisankgfsrksimTSAEGKHKEPPVKRSRSLSPKSS--FTDSEE 527
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEE--------------LKKEIEELEEKVKELKELKEKAEeyIKLSEF 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 528 LQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQLRQED 607
Cdd:PRK03918 302 YEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 608 SDavwNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQlfrsGEDDEVKRSTPEKNGKEML 687
Cdd:PRK03918 382 TG---LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK----GKCPVCGRELTEEHRKELL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 688 EQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTE---LQVKI 764
Cdd:PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEyekLKEKL 534
|
330 340 350
....*....|....*....|....*....|...
gi 1432257300 765 SELETEVTSLRRQVAEANALRNENEELINPMEK 797
Cdd:PRK03918 535 IKLKGEIKSLKKELEKLEELKKKLAELEKKLDE 567
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
151-802 |
3.52e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 3.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 151 EKQKSEAKDRKVLEILQVKDAKIQEFEQRESvlKQEINDLVKRKIAVDEENAFLRKEfSDLEKKFKDKSQEIKDTKECVQ 230
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKA--EEERNNEEIRKFEEARMAHFARRQ-AAIKAEEARKADELKKAEEKKK 1291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 231 NKEEQNRLVIKNLEEENKKL--STRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNAlsl 308
Cdd:PTZ00121 1292 ADEAKKAEEKKKADEAKKKAeeAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA--- 1368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 309 qlSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLynelh 388
Cdd:PTZ00121 1369 --AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE----- 1441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 389 icfETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQgaplplpqesdpdysaqvphrpslssletlmvsQKSEI 468
Cdd:PTZ00121 1442 ---EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE---------------------------------EAKKA 1485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 469 EYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQK---LRKAE--RKIENLEK 543
Cdd:PTZ00121 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKadeLKKAEelKKAEEKKK 1565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 544 ALQLKSQEND---------ELRDAHEKRKERLQMLQTNYRAVK-EQLKQWEEgsgmteirkiKRADPQQLRQEDSDAVWN 613
Cdd:PTZ00121 1566 AEEAKKAEEDknmalrkaeEAKKAEEARIEEVMKLYEEEKKMKaEEAKKAEE----------AKIKAEELKKAEEEKKKV 1635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 614 ELAYFKRENQELMIQKMNLEEELD-----ELKVHISIDKAAIQELNRCVAERR--EEQLFRSGED----DEVKRSTPEKN 682
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKAEEENkikaaEEAKKAEEDKKKAEEAKKAEEDEKkaAEALKKEAEEakkaEELKKKEAEEK 1715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 683 GK-EMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKgsKDVEKENTELQ 761
Cdd:PTZ00121 1716 KKaEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE--EELDEEDEKRR 1793
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 1432257300 762 VKISELETEVTSLRRQVAEANalrNENEELINPMEKSHQSA 802
Cdd:PTZ00121 1794 MEVDKKIKDIFDNFANIIEGG---KEGNLVINDSKEMEDSA 1831
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
526-808 |
5.82e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 5.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 526 EELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEgsgmteirkikradpqqlrq 605
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ-------------------- 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 606 edsdavwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQlfrsgeddevkrstpeKNGKE 685
Cdd:COG1196 303 --------DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL----------------EEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 686 MLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKIS 765
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1432257300 766 ELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSE 808
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
103-663 |
1.26e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 103 QLLEEELSSLKEELALCQADKEfvwslwkRLQVTNPDLTQVVSLVVEREkQKSEAKDRKVLEILQVKDAKIQEFEQRESV 182
Cdd:COG1196 249 EELEAELEELEAELAELEAELE-------ELRLELEELELELEEAQAEE-YELLAELARLEQDIARLEERRRELEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 183 LKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKLST---RCTDLLN 259
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEalrAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 260 DLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYK 339
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 340 QNSTHTAQQAELIQQLQvlNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEAMLRQSVT-NLQDQLLQKEQE 418
Cdd:COG1196 481 ELLEELAEAAARLLLLL--EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAaALQNIVVEDDEV 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 419 NAKLKEKLQESQ-GAPLPLPQESDPDYSAQVPHRPSLSSLETLMVSQKSEIEYLQEKLKIANEKLSENISANKGFSRKSI 497
Cdd:COG1196 559 AAAAIEYLKAAKaGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 498 MTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVK 577
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 578 EQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWNELA-YFKRENQELMIQKmnLEEELDELKvhiSIDKAAIQELNRc 656
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPePPDLEELERELER--LEREIEALG---PVNLLAIEEYEE- 792
|
....*..
gi 1432257300 657 VAERREE 663
Cdd:COG1196 793 LEERYDF 799
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
131-780 |
1.88e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.67 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 131 KRLQVTNPDLTQVVSLVVEREKQ-KSEAKDRKVLEILQVKDAKIQEFEQRESVLKQeiNDLVKRKIAVDEENAFLRKEFS 209
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQeLKLKEQAKKALEYYQLKEKLELEEEYLLYLDY--LKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 210 DLEKKFKDKSQEIKDTKECVQNKEEQnrlVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNL 289
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEK---EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 290 IEARKEVE-----------VSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVL 358
Cdd:pfam02463 331 KKEKEEIEelekelkeleiKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 359 N------MDTQKVLRNQEDVHTAESisyQKLYNELHICFETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQGA 432
Cdd:pfam02463 411 LelarqlEDLLKEEKKEELEILEEE---EESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 433 PLPLPQESDPDYSAQVPHRPSLSSLETLMVSQKS----EIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEP 508
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGgriiSAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLV 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 509 PVKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSG 588
Cdd:pfam02463 568 RALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESG 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 589 MTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERRE-EQLFR 667
Cdd:pfam02463 648 LRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEElLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 668 SGEDDEVKRSTPEKNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQII 747
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALE 807
|
650 660 670
....*....|....*....|....*....|...
gi 1432257300 748 KGSKDVEKENTELQVKISELETEVTSLRRQVAE 780
Cdd:pfam02463 808 EELKEEAELLEEEQLLIEQEEKIKEEELEELAL 840
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
170-741 |
3.91e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 3.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 170 DAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKkfkdksqeikdTKECVQNKEEQNRLV---IKNLEEE 246
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-----------LKEEIEELEKELESLegsKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 247 NKKLSTRCTDLLNDLEKLRKQEAHLR--KEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDI 324
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKelKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 325 TLVRKELQELQNLYkqnsthtaqqAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELhicfETTKSNEAMLRQS 404
Cdd:PRK03918 341 EELKKKLKELEKRL----------EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKEL----EELEKAKEEIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 405 VTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPqesdpdysaqVPHRP-SLSSLETLMVSQKSEIEYLQEKLKIANEKLS 483
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKAIEELKKAKGKCP----------VCGRElTEEHRKELLEEYTAELKRIEKELKEIEEKER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 484 EnISANKGFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQKLRKAERKIEnlEKALQLKSQENDELRDAhekrk 563
Cdd:PRK03918 477 K-LRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK--EKLIKLKGEIKSLKKEL----- 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 564 ERLQMLQTNYRAVKEQLKQWEE--GSGMTEIRKIKRADPQQLRQEDSdavwnELAYFKRENQELMIQKMNLEEELDELKV 641
Cdd:PRK03918 549 EKLEELKKKLAELEKKLDELEEelAELLKELEELGFESVEELEERLK-----ELEPFYNEYLELKDAEKELEREEKELKK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 642 HISIDKAAIQELNRCVAERRE-----EQLFRSGEDDEVKRSTPEKNGKEM-LEQTLQKVTELENRLKSFEKRSRKLKEGN 715
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEElrkelEELEKKYSEEEYEELREEYLELSReLAGLRAELEELEKRREEIKKTLEKLKEEL 703
|
570 580
....*....|....*....|....*.
gi 1432257300 716 KKLMKENDFLKSLLKQQQEDTETREK 741
Cdd:PRK03918 704 EEREKAKKELEKLEKALERVEELREK 729
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
204-835 |
1.81e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 204 LRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKL-STRCTDLLNDLEKLRKQEAHLRKE--KYSTDA 280
Cdd:PTZ00121 1072 LKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEeAKKKAEDARKAEEARKAEDARKAEeaRKAEDA 1151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 281 KIKTFEDNLIEARKeVEVSQSKYNALSLQLSNKQTEL-----IQKDMDITLVrKELQELQNLYKQNSTHTAQQAELIQQL 355
Cdd:PTZ00121 1152 KRVEIARKAEDARK-AEEARKAEDAKKAEAARKAEEVrkaeeLRKAEDARKA-EAARKAEEERKAEEARKAEDAKKAEAV 1229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 356 QvlnmDTQKVLRNQEDVHTAESISYqklyNELHICFETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLP 435
Cdd:PTZ00121 1230 K----KAEEAKKDAEEAKKAEEERN----NEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEK 1301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 436 LPQESDPDYSaqvphrpslssletlmvSQKSEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRS 515
Cdd:PTZ00121 1302 KKADEAKKKA-----------------EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 516 LSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHE-KRKERLQMLQTNYRAVKEQLKQWEEGSGMTEirK 594
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADElKKAAAAKKKADEAKKKAEEKKKADEAKKKAE--E 1442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 595 IKRADPQQLRQEDSDAVWN--ELAYFKRENQELMiQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGED- 671
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEakKKAEEAKKADEAK-KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEa 1521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 672 ---DEVKRSTPEKNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKlmKENDFLKSLLKQQQEDTETREKELEQIIK 748
Cdd:PTZ00121 1522 kkaDEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK--KAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 749 GSKDVEKENTELQVKISELETEVTSLRRqvaeANALRNENEELINPMEKSHQSADRAKSEMATMKVRSGRYDCKTTMTKV 828
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKK----AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
....*..
gi 1432257300 829 KFKAAKK 835
Cdd:PTZ00121 1676 KAEEAKK 1682
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
212-799 |
2.27e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 212 EKKFKDKSQEIKDTKECVQNKEEQnrlvIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIE 291
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKE----LKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 292 ARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKEL----QELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLR 367
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIkkkeKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 368 NQEDVHTAESISYQKL-----YNELHICFETTKSNeamLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDP 442
Cdd:TIGR04523 188 NIDKIKNKLLKLELLLsnlkkKIQKNKSLESQISE---LKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 443 DYSAQVPHRPSLSSLETLMVSQKSEIEYLQEKLKIANEKLSENISANkgfsRKSIMTSAEGKHKEPPVKRSRSlspkssf 522
Cdd:TIGR04523 265 IKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKE----LKSELKNQEKKLEEIQNQISQN------- 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 523 tdseeLQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQ 602
Cdd:TIGR04523 334 -----NKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQ 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 603 LRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPE-- 680
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQkq 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 681 ---KNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETRE----------------K 741
Cdd:TIGR04523 489 kelKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDfelkkenlekeideknK 568
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1432257300 742 ELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSH 799
Cdd:TIGR04523 569 EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN 626
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
529-1304 |
2.79e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 529 QKLRKAERKIENLEKALqlksqenDELRDAHEKRKERLQMLQ------TNYRAVKEQLKQWEEGSGMTEIRKIKRadpqq 602
Cdd:TIGR02168 172 ERRKETERKLERTRENL-------DRLEDILNELERQLKSLErqaekaERYKELKAELRELELALLVLRLEELRE----- 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 603 lrqedsdavwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEqlfrsgeddevkrstpekn 682
Cdd:TIGR02168 240 -----------ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE------------------- 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 683 gkemLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQV 762
Cdd:TIGR02168 290 ----LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 763 KISELET--------------EVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATMKVRSGRYDCKTTMTKV 828
Cdd:TIGR02168 366 ELEELESrleeleeqletlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 829 KFKAAKKNCSVGRHHTVLN---------------------------HSIKVMSNVFENLSKDG----------------- 864
Cdd:TIGR02168 446 EEELEELQEELERLEEALEelreeleeaeqaldaaerelaqlqarlDSLERLQENLEGFSEGVkallknqsglsgilgvl 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 865 WEDVSESSDSEAQTSQTLG----TIIVETSQK-------ISPTEDGK---------DQKESDPTEDSQTQGKEIVQTYLN 924
Cdd:TIGR02168 526 SELISVDEGYEAAIEAALGgrlqAVVVENLNAakkaiafLKQNELGRvtflpldsiKGTEIQGNDREILKNIEGFLGVAK 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 925 IDGKTPKDYfhdKNAKKPTFQkkNCKMQKSSHTAVPTRV-NREKYKNITAQ---------------KSSSNIILLRERII 988
Cdd:TIGR02168 606 DLVKFDPKL---RKALSYLLG--GVLVVDDLDNALELAKkLRPGYRIVTLDgdlvrpggvitggsaKTNSSILERRREIE 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 989 SLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDLLKKLESSSEITSLAE 1068
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1069 ENSQVTFPRIQVTSLSPSRSMDlEMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHL 1148
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1149 IEDLKFRQKVNLESNKSFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEksqyeqmYQKSKEELEKKDLKLTL 1228
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE-------LEELSEELRELESKRSE 912
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1432257300 1229 LVSRISETESAMAEIETAASKQLQELALQSEQVLEGAQKTLllanEKVEEFTTFVKALAKELQNDVHVVRRQIREL 1304
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTL----EEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
510-1356 |
3.59e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 3.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 510 VKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAhEKRKERLQMLQTNYRAvkEQLKQWEEGSGM 589
Cdd:PTZ00121 1066 VGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEA-RKAEEAKKKAEDARKA--EEARKAEDARKA 1142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 590 TEIRKIKRADPQQLRQEDSDAVWNELAYfKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSG 669
Cdd:PTZ00121 1143 EEARKAEDAKRVEIARKAEDARKAEEAR-KAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE 1221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 670 ED---------DEVKRSTPEKNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKEndflkslLKQQQEDTETRE 740
Cdd:PTZ00121 1222 DAkkaeavkkaEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADE-------LKKAEEKKKADE 1294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 741 KELEQIIKGSKDVEKENTELQvKISELETEVTSLRRQvaeANALRNENEELINPMEKSHQSADRAKSEMATMKVRSGRYD 820
Cdd:PTZ00121 1295 AKKAEEKKKADEAKKKAEEAK-KADEAKKKAEEAKKK---ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 821 CKTTMTKVKFKAAKKNCSVGRHHtvlnhsikvmsnvfENLSKDGWEDVSESSD-SEAQTSQTLGTIIVETSQKISPTEDG 899
Cdd:PTZ00121 1371 KKKEEAKKKADAAKKKAEEKKKA--------------DEAKKKAEEDKKKADElKKAAAAKKKADEAKKKAEEKKKADEA 1436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 900 KDQKESDPTEDSQTQGKEIVQTYLNIDGKTPKDYFHDKNAKKPTFQKKNCKMQKSSHTAvpTRVNREKYKNITAQKSSSN 979
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA--KKKADEAKKAAEAKKKADE 1514
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 980 IILLRERIISLQQQNSvlQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDLLKKLES 1059
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKA--EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1060 SSEITSL---------AEENSQVTFPRIQVTSLSPSRSMDLEMKQLQYKL---KNATNELTKQSSNVKTLKFELLAKEEH 1127
Cdd:PTZ00121 1593 RIEEVMKlyeeekkmkAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaeeKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1128 IKEMHEKISRMERDI-----TMKRHLIEDLKFRQ-KVNLESNKSFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVA 1201
Cdd:PTZ00121 1673 DKKKAEEAKKAEEDEkkaaeALKKEAEEAKKAEElKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1202 VKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEIETaaSKQLQELALQSEQVLEGAQKTLLLANEKVEEFTT 1281
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV--DKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS 1830
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1432257300 1282 FVKalakELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDTEDQVEIEKTKIDAE 1356
Cdd:PTZ00121 1831 AIK----EVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIERE 1901
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
592-823 |
3.89e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 592 IRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGED 671
Cdd:PRK03918 151 VRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 672 DEVKRSTPEKNGKEMLEQTLQK-VTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLlKQQQEDTETREKELEQIIKGS 750
Cdd:PRK03918 231 KELEELKEEIEELEKELESLEGsKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL-KEKAEEYIKLSEFYEEYLDEL 309
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1432257300 751 KDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEEL---INPMEKSHQSADRAKSEMATMKVRSGRYDCKT 823
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELekrLEELEERHELYEEAKAKKEELERLKKRLTGLT 385
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
983-1272 |
4.04e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 48.28 E-value: 4.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 983 LRERIISLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLaglrKEKEDLLK--KLESS 1060
Cdd:pfam10174 420 LKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL----KEKVSALQpeLTEKE 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1061 SEITSLAEensqvtfpriQVTSLSPS-RSMDLEMKQLQYKLKNATNELTKQSSNVKTLKfELLAKEEHIKEMHEKISRME 1139
Cdd:pfam10174 496 SSLIDLKE----------HASSLASSgLKKDSKLKSLEIAVEQKKEECSKLENQLKKAH-NAEEAVRTNPEINDRIRLLE 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1140 RDITMKR-----------HLIEDLKFRQKVNLESNKSFSEMLQNLDKKVKTLTEECSNKKvSIDSLKQRLNVAVKEKSQY 1208
Cdd:pfam10174 565 QEVARYKeesgkaqaeveRLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIK-HGQQEMKKKGAQLLEEARR 643
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1432257300 1209 EQMYQKSK----------EELEKKDLKLTLLVSRISETESAMAEIETAASKQLQELALQSEQVLEGAQKTLLLA 1272
Cdd:pfam10174 644 REDNLADNsqqlqleelmGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAA 717
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
178-793 |
7.72e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 7.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 178 QRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDL 257
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 258 LNDLEKLRKQEAHLRKEKySTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNL 337
Cdd:TIGR04523 197 LKLELLLSNLKKKIQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKE 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 338 YKQNSTHTAQQAELIQQL--QVLNMDTQKVLRNQEDVHTaESISYQKLYNELHICFETTKSNEAMLRQSVTNLQDQLLQK 415
Cdd:TIGR04523 276 LEQNNKKIKELEKQLNQLksEISDLNNQKEQDWNKELKS-ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNS 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 416 EQENAKLKEKLQESQGAPLPLPQESDpdysaqvphrpslssletlmvSQKSEIEYLQEKLKIANEKLSENISANKGFSRK 495
Cdd:TIGR04523 355 ESENSEKQRELEEKQNEIEKLKKENQ---------------------SYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 496 SIMTSAEGKHKEPPVKRSRslspkssftdseelQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRA 575
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLK--------------ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 576 VKEQLKQWEEgsgmteirkikradpqqlrqedsdavwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNR 655
Cdd:TIGR04523 480 IKQNLEQKQK----------------------------ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES 531
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 656 CVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQED 735
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK 611
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1432257300 736 TETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELIN 793
Cdd:TIGR04523 612 ISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIK 669
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
259-428 |
7.93e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 7.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 259 NDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLY 338
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 339 kqnsthtaqqAELIQQLQVL-NMDTQKVLRNQEDVHTAESIS--YQKLYNELHICFETTKSNEAMLRQSVTNLQDQLLQK 415
Cdd:COG4942 107 ----------AELLRALYRLgRQPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170
....*....|...
gi 1432257300 416 EQENAKLKEKLQE 428
Cdd:COG4942 177 EALLAELEEERAA 189
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
156-808 |
2.17e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 156 EAKDRKVLEILQVKDakiqeFEQRESVLKQEINDLVKRKIAVDEenaFLRKEfSDLEKKFKDKSQEIKDTKECVQNKEEQ 235
Cdd:PRK03918 145 ESREKVVRQILGLDD-----YENAYKNLGEVIKEIKRRIERLEK---FIKRT-ENIEELIKEKEKELEEVLREINEISSE 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 236 NRLVIKNLEEENKKLStRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNAL-SLQLSNKQ 314
Cdd:PRK03918 216 LPELREELEKLEKEVK-ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELkELKEKAEE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 315 TELIQKDMDitlvrKELQELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVlrnqedvhtaesisyqklyNELHICFETT 394
Cdd:PRK03918 295 YIKLSEFYE-----EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL-------------------EELKKKLKEL 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 395 KSNEAMLRQSVTNLQDqLLQKEQENAKLKEKLQESqgaplplpqesdpdysaqvphrpSLSSLETLMVSQKSEIEYLQEK 474
Cdd:PRK03918 351 EKRLEELEERHELYEE-AKAKKEELERLKKRLTGL-----------------------TPEKLEKELEELEKAKEEIEEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 475 LKIANEKLSEnISANKGFSRKSIMTSAEGKHKEPPVKRSrslspkssFTDSEELQKLRKAERKIENLEKALQLKSQENDE 554
Cdd:PRK03918 407 ISKITARIGE-LKKEIKELKKAIEELKKAKGKCPVCGRE--------LTEEHRKELLEEYTAELKRIEKELKEIEEKERK 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 555 LRdaheKRKERLQMLQTN------YRAVKEQLKQWEEGSGMTEIRKIKRAdpqqlrqedsdavWNELAYFKRENQELMIQ 628
Cdd:PRK03918 478 LR----KELRELEKVLKKeselikLKELAEQLKELEEKLKKYNLEELEKK-------------AEEYEKLKEKLIKLKGE 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 629 KMNLEEELDELKVHISiDKAAIQELNRCVAERREEQL-------FRSGEDDEVKRSTPEKNGKEMLEqTLQKVTELENRL 701
Cdd:PRK03918 541 IKSLKKELEKLEELKK-KLAELEKKLDELEEELAELLkeleelgFESVEELEERLKELEPFYNEYLE-LKDAEKELEREE 618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 702 KSFEKRSRKLKEGNKKLMKENDFLKSLlkqqqedtetrEKELEQiiKGSKDVEKENTELQVKISELETEVTSLRRQVAEA 781
Cdd:PRK03918 619 KELKKLEEELDKAFEELAETEKRLEEL-----------RKELEE--LEKKYSEEEYEELREEYLELSRELAGLRAELEEL 685
|
650 660
....*....|....*....|....*..
gi 1432257300 782 NALRNENEELINPMEKSHQSADRAKSE 808
Cdd:PRK03918 686 EKRREEIKKTLEKLKEELEEREKAKKE 712
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
129-356 |
2.62e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 129 LWKRLQVTNPDLTQVVSLVVEREKQKSEAKDRKVLEILQVKdAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEF 208
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE-AQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 209 SDLEKKFKDKSQEIKDTKECVQNKEEQ---NRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTF 285
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDiesLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1432257300 286 EDNLIEARKEVEVSQSKYNALSLQLSN-KQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQ 356
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGlEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
526-664 |
3.95e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 526 EELQKLRKAERKIENLEKALQLKSQENDELRDAHEKR---------KERLQMLQTNYRAVKEQLKQWEEGsgMTEIRKIK 596
Cdd:COG4717 92 ELQEELEELEEELEELEAELEELREELEKLEKLLQLLplyqelealEAELAELPERLEELEERLEELREL--EEELEELE 169
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1432257300 597 ------RADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQ 664
Cdd:COG4717 170 aelaelQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
229-430 |
4.21e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 229 VQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQE--AHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNAL 306
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 307 SLQLSNKQTEL--IQKDMDITLVRKELQELQnlykqnsthtAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLY 384
Cdd:COG3206 246 RAQLGSGPDALpeLLQSPVIQQLRAQLAELE----------AELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1432257300 385 NELHICFETTKSNEAMLRQSVTNLQDQLL---QKEQENAKLKEKLQESQ 430
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARLAelpELEAELRRLEREVEVAR 364
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
173-359 |
8.54e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 8.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 173 IQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQnrlvIKNLEEENKKLST 252
Cdd:TIGR04523 351 LTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ----IKKLQQEKELLEK 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 253 RCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQ 332
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
|
170 180
....*....|....*....|....*..
gi 1432257300 333 ELQNlykQNSTHTAQQAELIQQLQVLN 359
Cdd:TIGR04523 507 ELEE---KVKDLTKKISSLKEKIEKLE 530
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
263-778 |
1.16e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 263 KLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSL---QLSNKQTELIQKDMDITLVRKELQELQNLYK 339
Cdd:pfam05483 82 KLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFeneKVSLKLEEEIQENKDLIKENNATRHLCNLLK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 340 QNSTHTAQQA--------ELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEAMLRQSVTNLQDQ 411
Cdd:pfam05483 162 ETCARSAEKTkkyeyereETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQ 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 412 ----LLQKEQENAKLKEklqesqgaplplpqesdpdysaqvphrpslssLETLMVSQKSEIEYLQEKLKIANEKLSENIS 487
Cdd:pfam05483 242 vsllLIQITEKENKMKD--------------------------------LTFLLEESRDKANQLEEKTKLQDENLKELIE 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 488 ANKGFSRKSimtsaegkhKEPPVKRSRSLSPKSSFTDSEEL------QKLRKAERKIENLEKALQLKSQENDELRDAHEK 561
Cdd:pfam05483 290 KKDHLTKEL---------EDIKMSLQRSMSTQKALEEDLQIatkticQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCS 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 562 RKERLQMLQTNYRAVKEQLKQWEegsgMTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKv 641
Cdd:pfam05483 361 LEELLRTEQQRLEKNEDQLKIIT----MELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELK- 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 642 hisidkAAIQELNRCVAERREEQlfrsgEDDEVKRSTPEKNGKEMLEQTLQKVTELEN-RLKSFE--KRSRKLKEGNKKL 718
Cdd:pfam05483 436 ------GKEQELIFLLQAREKEI-----HDLEIQLTAIKTSEEHYLKEVEDLKTELEKeKLKNIEltAHCDKLLLENKEL 504
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 719 MKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQV 778
Cdd:pfam05483 505 TQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEV 564
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
502-787 |
1.16e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 502 EGKHKEPPVKRSRSLSPKSSFTDSEelqklrkAERKIENLEKALQLKsQENDELRDAHEKRKERLQMLQTnyravkeqlk 581
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEE-------IERYEEQREQARETR-DEADEVLEEHEERREELETLEA---------- 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 582 qweegsgmtEIRKIkradpqqlrQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQElnrcVAERR 661
Cdd:PRK02224 259 ---------EIEDL---------RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA----VEARR 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 662 EEQlfrSGEDDEVKRStpekngkemLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETR-- 739
Cdd:PRK02224 317 EEL---EDRDEELRDR---------LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRre 384
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1432257300 740 -----EKELEQIIKG--------------SKDVEKENTELQVKISELETEVTSLRRQVAEANALRNE 787
Cdd:PRK02224 385 eieelEEEIEELRERfgdapvdlgnaedfLEELREERDELREREAELEATLRTARERVEEAEALLEA 451
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1092-1291 |
1.18e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1092 EMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHE-------KISRMERDITMKRHLIEDLKFRQKVNLESNK 1164
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAeeyellaELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1165 SFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEIE 1244
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1432257300 1245 TAASKQLQELALQSEQVLEGAQKTLLLANEKVEEFTTFVKALAKELQ 1291
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1046-1396 |
1.43e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1046 LRKEKEDLLKKLESSSEITSLAEENSQVTFPRIQVTSLSPSRSMDLEMKQlqYKLKNATNELTKQSSNVKTLKFELLAKE 1125
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL--EKLEKEVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1126 EHIKEMHEKISRMERDITMKRHLIEDLKFRQKvNLESNKSFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEK 1205
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVK-ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1206 SQYEQMyqksKEELEKKDLKLTLLVSRISETESAMAEIETAASKQLQ------ELALQSEQVLEGAQKTLLLANEKVEEF 1279
Cdd:PRK03918 331 KELEEK----EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEElerlkkRLTGLTPEKLEKELEELEKAKEEIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1280 TTFVKALAKELQNDVHVVRRQIRELKKMKKNRDACK---TSTHKAQTLAASILNISR--SDLEEILDTEDQVEIEKTKID 1354
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGrelTEEHRKELLEEYTAELKRieKELKEIEEKERKLRKELRELE 486
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1432257300 1355 AENDKEWMLYIQKLLEGQLPFASYLLEAV-LEKINEKKKLVEG 1396
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLKELEEKLKKYnLEELEKKAEEYEK 529
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1121-1356 |
1.54e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1121 LLAKEEHIKEMHEKISRMERDITMKRHLIEDLKfrqkvnlesnKSFSEMLQNLDKKVKTLTEecsnKKVSIDSLKQRLNV 1200
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELR----------KELEELEEELEQLRKELEE----LSRQISALRKDLAR 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1201 AVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEIEtAASKQLQELALQSEQVLEGAQKTLLLANEKVEEft 1280
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE-AEIEELEAQIEQLKEELKALREALDELRAELTL-- 814
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1432257300 1281 tfVKALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDTEDQVEIEKTKIDAE 1356
Cdd:TIGR02168 815 --LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1036-1303 |
1.55e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1036 IKKLN-LDLAGLRKEKEDLLKKLESSS--EITSLAEEnsqvtfprIQVTSLSPSRSMDLEMKQLQYKLKNATNELTKQSS 1112
Cdd:PRK05771 3 PVRMKkVLIVTLKSYKDEVLEALHELGvvHIEDLKEE--------LSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLRE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1113 NVKTLKFELLAK------------EEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNLE-----SNKSFSEMLQNLDK 1175
Cdd:PRK05771 75 EKKKVSVKSLEElikdveeelekiEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDlslllGFKYVSVFVGTVPE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1176 KVKTLTEECSNKKVS--IDSLKQRLNVA-VKEKSQYEQMYQ----------------KSKEELEKKDLKLTLLVSRISET 1236
Cdd:PRK05771 155 DKLEELKLESDVENVeyISTDKGYVYVVvVVLKELSDEVEEelkklgferleleeegTPSELIREIKEELEEIEKERESL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1237 ESAMAEIetaaSKQLQELALQSEQVLEG-AQKTLLLANEK-------------VEEFTTFVKALAKELQNDVHVVRRQIR 1302
Cdd:PRK05771 235 LEELKEL----AKKYLEELLALYEYLEIeLERAEALSKFLktdktfaiegwvpEDRVKKLKELIDKATGGSAYVEFVEPD 310
|
.
gi 1432257300 1303 E 1303
Cdd:PRK05771 311 E 311
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
157-320 |
1.62e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 157 AKDRKVLEILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQN 236
Cdd:COG1579 3 PEDLRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 237 RLVIKN-----LEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLS 311
Cdd:COG1579 83 GNVRNNkeyeaLQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELE 162
|
....*....
gi 1432257300 312 NKQTELIQK 320
Cdd:COG1579 163 AEREELAAK 171
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
529-663 |
1.89e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 529 QKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEgsgmteirKIKRADPQQLR---Q 605
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEA--------RIKKYEEQLGNvrnN 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1432257300 606 EDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREE 663
Cdd:COG1579 89 KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE 146
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
584-1360 |
1.97e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 584 EEGSGMTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEE----ELDELKVHISIDKAAIQELNRCVAE 659
Cdd:pfam02463 159 EEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKAleyyQLKEKLELEEEYLLYLDYLKLNEER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 660 RREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNK--------KLMKENDFLKSLLKQ 731
Cdd:pfam02463 239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEeelksellKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 732 QQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMAT 811
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 812 MKVRSGRYDCK----------TTMTKVKFKAAKKNCSVGRHHTVLNHSIKVMSNVFENLSKDGWEDVSESSDSEAQTSqt 881
Cdd:pfam02463 399 LKSEEEKEAQLllelarqledLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKE-- 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 882 lgtIIVETSQKISPTEDGKDQKESDPTEDSQTQGKEIVQTYLNIDGKTPKDYFHDKNAKKPTFQKKNCKMQKSshTAVPT 961
Cdd:pfam02463 477 ---TQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIS--TAVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 962 RVNREKYKNITAQKSSSNIILLRERIISLQQQNSVLQNAKKTaeLSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNL 1041
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKS--IAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGIL 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1042 DLAGLRKEKEDLLKKLESSSEITSLAEENSQVTFpriQVTSLSPSRSMDLEMKQLQYKLKNATNELTKQSSNVKTLKFEL 1121
Cdd:pfam02463 630 KDTELTKLKESAKAKESGLRKGVSLEEGLAEKSE---VKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQ 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1122 LAKEEHIKEMHEKISRMERDITMKRHLI--EDLKFRQKVNLESNKSFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLN 1199
Cdd:pfam02463 707 REKEELKKLKLEAEELLADRVQEAQDKIneELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKL 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1200 VAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEI--ETAASKQLQELALQSEQVLEGAQKTLLLANEKVE 1277
Cdd:pfam02463 787 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIkeEELEELALELKEEQKLEKLAEEELERLEEEITKE 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1278 EFTTFVKALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDTEDQVEIEKTKIDAEN 1357
Cdd:pfam02463 867 ELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEAD 946
|
...
gi 1432257300 1358 DKE 1360
Cdd:pfam02463 947 EKE 949
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1008-1359 |
2.05e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1008 VKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDLLKKLESSSEITSLAeensqvtfpriQVTSLSPSR 1087
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYE-----------GYELLKEKE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1088 SMDLEMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRM--ERDITMKRHlIEDLKFRQKvNLESNKS 1165
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeEEQLRVKEK-IGELEAEIA-SLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1166 FSEM-LQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEkkdlkltLLVSRISETESAMAEIE 1244
Cdd:TIGR02169 312 EKEReLEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELE-------DLRAELEEVDKEFAETR 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1245 TAASKQLQEL-ALQSE-QVLEGAQKTLLLANEKVEEfttfvkALAkELQNDVHVVRRQIRELK-KMKKNRDACKTSTHKA 1321
Cdd:TIGR02169 385 DELKDYREKLeKLKREiNELKRELDRLQEELQRLSE------ELA-DLNAAIAGIEAKINELEeEKEDKALEIKKQEWKL 457
|
330 340 350
....*....|....*....|....*....|....*...
gi 1432257300 1322 QTLAAsILNISRSDLEEILDTEDQVEIEKTKIDAENDK 1359
Cdd:TIGR02169 458 EQLAA-DLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
530-813 |
2.12e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 530 KLRKAERKIENLEKALQLKSQENDELRDAHEK-RKERLQMLQtnYRAVKEQLKQWEegsgMTEIRKIKRADPQQLRQEDS 608
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERlRREREKAER--YQALLKEKREYE----GYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 609 davwnelayfkrenqelmiQKMNLEEELDELKVHISIDKAAIQELNRcVAERREEQLFRSGEDDEVKRSTPEKNGKEMLE 688
Cdd:TIGR02169 245 -------------------QLASLEEELEKLTEEISELEKRLEEIEQ-LLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 689 QTLQKVTELENRLKSFEKRSRKLKEgnkklmkENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELE 768
Cdd:TIGR02169 305 SLERSIAEKERELEDAEERLAKLEA-------EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD 377
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1432257300 769 TEVTSLRRQVAEA----NALRNENEELINPMEKSHQSADRAKSEMATMK 813
Cdd:TIGR02169 378 KEFAETRDELKDYreklEKLKREINELKRELDRLQEELQRLSEELADLN 426
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1021-1273 |
2.59e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1021 QQQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDLLKKLESSseitslaeensqvtfpriqvtslspsrsmDLEMKQLQYKL 1100
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----------------------------ERRIAALARRI 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1101 KNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDI-TMKRHLIEDLKFRQKVNLESNKSFsEMLQNLDKKVKT 1179
Cdd:COG4942 72 RALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRL-QYLKYLAPARRE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1180 LTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEK----KDLKLTLLVSRISETESAMAEIETAAsKQLQELA 1255
Cdd:COG4942 151 QAEELRADLAELAALRAELEAERAELEALLAELEEERAALEAlkaeRQKLLARLEKELAELAAELAELQQEA-EELEALI 229
|
250
....*....|....*...
gi 1432257300 1256 LQSEQVLEGAQKTLLLAN 1273
Cdd:COG4942 230 ARLEAEAAAAAERTPAAG 247
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
533-813 |
3.44e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 533 KAERKIENLEKA-LQLKSQ-----ENDELRDAHEKRKERLQmlqTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQLRQE 606
Cdd:PRK04863 349 KIERYQADLEELeERLEEQnevveEADEQQEENEARAEAAE---EEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 607 DSDavWNELAYFKRENQELMI-----QKMNLEEELDELKVHISIDKAAiqelnrcvAERREE--QLFRSGEDdEVKRSTP 679
Cdd:PRK04863 426 AKQ--LCGLPDLTADNAEDWLeefqaKEQEATEELLSLEQKLSVAQAA--------HSQFEQayQLVRKIAG-EVSRSEA 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 680 EKNGKEMLEQ------TLQKVTELENRLKSFEKRSRK-------LKEGNKKLMKE---NDFLKSLLKQQQEDTETREKEL 743
Cdd:PRK04863 495 WDVARELLRRlreqrhLAEQLQQLRMRLSELEQRLRQqqraerlLAEFCKRLGKNlddEDELEQLQEELEARLESLSESV 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 744 EQIIKGSKDVEKENTELQVKISELETE----------VTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATMK 813
Cdd:PRK04863 575 SEARERRMALRQQLEQLQARIQRLAARapawlaaqdaLARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARK 654
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1092-1268 |
3.48e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1092 EMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVN---------LES 1162
Cdd:COG3883 31 ELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSggsvsyldvLLG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1163 NKSFSEMLQNLD------KKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISET 1236
Cdd:COG3883 111 SESFSDFLDRLSalskiaDADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAE 190
|
170 180 190
....*....|....*....|....*....|..
gi 1432257300 1237 ESAMAEIETAASKQLQELALQSEQVLEGAQKT 1268
Cdd:COG3883 191 EAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
671-797 |
3.81e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 671 DDEVKRSTPEKNGKEMLEqtlqkVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIikgs 750
Cdd:COG2433 383 EELIEKELPEEEPEAERE-----KEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA---- 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1432257300 751 KDVEKENTELQVKISELETEVTSLRRQVAEanaLRNENEELINPMEK 797
Cdd:COG2433 454 RSEERREIRKDREISRLDREIERLERELEE---ERERIEELKRKLER 497
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
625-793 |
4.03e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 625 LMIQKMN------LEEELDELkvhisidkaaIQELnrcvaerREEQLFrsgE-DDEVKRSTPEKNGKemLEQTLQKVTEL 697
Cdd:PRK05771 1 LAPVRMKkvlivtLKSYKDEV----------LEAL-------HELGVV---HiEDLKEELSNERLRK--LRSLLTKLSEA 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 698 ENRLKSFEKRSRKLKEGNKKLmkendflksllkqqqedtetREKELEQIIKGSK----DVEKENTELQVKISELETEVTS 773
Cdd:PRK05771 59 LDKLRSYLPKLNPLREEKKKV--------------------SVKSLEELIKDVEeeleKIEKEIKELEEEISELENEIKE 118
|
170 180
....*....|....*....|
gi 1432257300 774 LRRQVAEANALRNENEELIN 793
Cdd:PRK05771 119 LEQEIERLEPWGNFDLDLSL 138
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
526-816 |
5.22e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 526 EELQKLRK--AERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMT-----EIRKIKRA 598
Cdd:PRK03918 372 EELERLKKrlTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrELTEEHRK 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 599 DPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAA--IQELNRCVAERREEQLFRSGEDDEVKR 676
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAeqLKELEEKLKKYNLEELEKKAEEYEKLK 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 677 STPEKNGKEM--LEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKEndfLKSLLKQQQEDTETREKELEQIIK---GSK 751
Cdd:PRK03918 532 EKLIKLKGEIksLKKELEKLEELKKKLAELEKKLDELEEELAELLKE---LEELGFESVEELEERLKELEPFYNeylELK 608
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1432257300 752 DVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATMKVRS 816
Cdd:PRK03918 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSR 673
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1091-1360 |
5.97e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 5.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1091 LEMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKfrqkvnlesnksfsEML 1170
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ--------------AEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1171 QNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEIETAASKQ 1250
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 1251 LQELALQSEQVLEGAQKTLLLANEKVEEfttfvkalAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILN 1330
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAEL--------AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270
....*....|....*....|....*....|
gi 1432257300 1331 ISRSDLEEILDTEDQVEIEKTKIDAENDKE 1360
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
605-810 |
6.23e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 6.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 605 QEDSDAVWNELAYFKRENQELMIQKmnLEEELDELKVHISIDKAAIQELNrcvAERREEQLFRSGEDDEVKRStpekngK 684
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEE--LEAELEELEAELEELEAELAELE---AELEELRLELEELELELEEA------Q 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 685 EMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKI 764
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1432257300 765 SELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMA 810
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
153-358 |
6.65e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 6.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 153 QKSEAKDRKVLEILQVKDAKIQEFEQRESVLKQEINDLvkrkiavDEENAFLRKEFSDLEKKFK---DKSQEIKDTKECV 229
Cdd:pfam07888 48 QAQEAANRQREKEKERYKRDREQWERQRRELESRVAEL-------KEELRQSREKHEELEEKYKelsASSEELSEEKDAL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 230 QNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLR---KQEAHLRKEKYSTDAKIKTfednliearkEVEVSQSKYNAL 306
Cdd:pfam07888 121 LAQRAAHEARIRELEEDIKTLTQRVLERETELERMKeraKKAGAQRKEEEAERKQLQA----------KLQQTEEELRSL 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1432257300 307 SLQLSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVL 358
Cdd:pfam07888 191 SKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSL 242
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
205-792 |
7.14e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 205 RKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLR----KQEAHLRKEKYSTDA 280
Cdd:TIGR00618 186 FAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTqkreAQEEQLKKQQLLKQL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 281 KIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQ----ELQNLYKQNSTHTAQQAELIQQLQ 356
Cdd:TIGR00618 266 RARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQskmrSRAKLLMKRAAHVKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 357 VLNMDTQKVLRNQEdvhtaesisyqklYNELHICFETTKSNEAMLRQSVTNLQDQ---LLQKEQENAKLKEKLQESQGAP 433
Cdd:TIGR00618 346 LLQTLHSQEIHIRD-------------AHEVATSIREISCQQHTLTQHIHTLQQQkttLTQKLQSLCKELDILQREQATI 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 434 LPLPQESDPD----YSAQVPHRPSLSSLETLMV-------SQKSEIEYLQE-----KLKIANEKLSENISANKGFSRKSI 497
Cdd:TIGR00618 413 DTRTSAFRDLqgqlAHAKKQQELQQRYAELCAAaitctaqCEKLEKIHLQEsaqslKEREQQLQTKEQIHLQETRKKAVV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 498 MTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQ----KLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNY 573
Cdd:TIGR00618 493 LARLLELQEEPCPLCGSCIHPNPARQDIDNPGpltrRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSF 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 574 RAVKEQLKQWEEGSGMT--EIRKIKRADPQQLRQEDSDAVWNELAYFKRE----NQELMIQKMNLEEELDELKVH----- 642
Cdd:TIGR00618 573 SILTQCDNRSKEDIPNLqnITVRLQDLTEKLSEAEDMLACEQHALLRKLQpeqdLQDVRLHLQQCSQELALKLTAlhalq 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 643 --ISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKVTELENRLKS----FEKRSRKLKEGNK 716
Cdd:TIGR00618 653 ltLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEydreFNEIENASSSLGS 732
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1432257300 717 KLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELI 792
Cdd:TIGR00618 733 DLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEI 808
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
490-640 |
8.48e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 8.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 490 KGFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKalqlksqENDELRDAHEKRKERLQML 569
Cdd:COG2433 374 RGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEA-------EVEELEAELEEKDERIERL 446
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1432257300 570 QTNYRAVKEqlkqwEEGSGMTEIRKIKRadpqqlRQEDSDAVWNELAYFKRENQElmiqkmnLEEELDELK 640
Cdd:COG2433 447 ERELSEARS-----EERREIRKDREISR------LDREIERLERELEEERERIEE-------LKRKLERLK 499
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
145-663 |
9.59e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 9.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 145 SLVVEREKQKSEAKDRKVLEILQVKDAKIQEFEQRESvLKQEINDLVKRKIAVDEENAFLRKE--FSDLEKK-FKDKSQE 221
Cdd:PRK02224 240 DEVLEEHEERREELETLEAEIEDLRETIAETEREREE-LAEEVRDLRERLEELEEERDDLLAEagLDDADAEaVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 222 IKDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQS 301
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 302 KYNALSLQLSNKQTELiqkdmdiTLVRKELQELQNlykqnsthtaQQAELIQQLQVLNMDTQKVLRNQEDVHTAESisYQ 381
Cdd:PRK02224 399 RFGDAPVDLGNAEDFL-------EELREERDELRE----------REAELEATLRTARERVEEAEALLEAGKCPEC--GQ 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 382 KLYNELHICFETTKsneamlRQSVTNLQDQLLQKEQENAKLKEKLQEsqgaplplpqesdpdysaqvphrpslssLETLm 461
Cdd:PRK02224 460 PVEGSPHVETIEED------RERVEELEAELEDLEEEVEEVEERLER----------------------------AEDL- 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 462 VSQKSEIEYLQEKLKIANEKLSENIS---------ANKGFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEelQKLR 532
Cdd:PRK02224 505 VEAEDRIERLEERREDLEELIAERREtieekreraEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN--SKLA 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1432257300 533 KAERKIENLEKALQLKSqENDELRDAHEKRKERLQMLQTNYRAVKEQLKQweegsgmteirkiKRADPQQLRQE-DSDAV 611
Cdd:PRK02224 583 ELKERIESLERIRTLLA-AIADAEDEIERLREKREALAELNDERRERLAE-------------KRERKRELEAEfDEARI 648
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1432257300 612 wnELAYFKRENQELMIQKMN-----LEEELDELKVHISIDKAAIQELNRcVAERREE 663
Cdd:PRK02224 649 --EEAREDKERAEEYLEQVEekldeLREERDDLQAEIGAVENELEELEE-LRERREA 702
|
|
| |
