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Conserved domains on  [gi|1375023107|ref|NP_001349059|]
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interferon induced protein with tetratricopeptide repeats 1B like 2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 159-419 4.67e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.07  E-value: 4.67e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 159 SQNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDgNSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHI 238
Cdd:COG2956    21 NGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYD-RAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 239 KEATLTISSQNNIFGYVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHktqffqmkkatsrENRKRADQschl 318
Cdd:COG2956   100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY-------------LEQGDYDE---- 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 319 AICHFKKTLELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEVLSMsnlgDYMQQEIHFRYGNFqqYYKKSE-EAAITHYL 397
Cdd:COG2956   163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ----DPDYLPALPRLAEL--YEKLGDpEEALELLR 236

                         250       260
                  ....*....|....*....|..
gi 1375023107 398 KGLKIEVTSHYRDKLLKALEEL 419
Cdd:COG2956   237 KALELDPSDDLLLALADLLERK 258
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
63-241 2.95e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.41  E-value: 2.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107  63 HNLLAYVRHLKGQQDEALQSLKEAEAliqseqLSKRSLATWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEFSSPFRYRle 142
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALE------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL-- 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 143 caemdceeGWALRKCGsqNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDgNSLQPLKKAVSVKPEDPYLKVLLA 222
Cdd:COG0457    83 --------GLALQALG--RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYD-EAIEAYERALELDPDDADALYNLG 151

                         170
                  ....*....|....*....
gi 1375023107 223 LKLQDLRKTDEAEKHIKEA 241
Cdd:COG0457   152 IALEKLGRYEEALELLEKL 170
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 159-419 4.67e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.07  E-value: 4.67e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 159 SQNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDgNSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHI 238
Cdd:COG2956    21 NGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYD-RAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 239 KEATLTISSQNNIFGYVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHktqffqmkkatsrENRKRADQschl 318
Cdd:COG2956   100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY-------------LEQGDYDE---- 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 319 AICHFKKTLELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEVLSMsnlgDYMQQEIHFRYGNFqqYYKKSE-EAAITHYL 397
Cdd:COG2956   163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ----DPDYLPALPRLAEL--YEKLGDpEEALELLR 236

                         250       260
                  ....*....|....*....|..
gi 1375023107 398 KGLKIEVTSHYRDKLLKALEEL 419
Cdd:COG2956   237 KALELDPSDDLLLALADLLERK 258
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
63-241 2.95e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.41  E-value: 2.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107  63 HNLLAYVRHLKGQQDEALQSLKEAEAliqseqLSKRSLATWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEFSSPFRYRle 142
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALE------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL-- 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 143 caemdceeGWALRKCGsqNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDgNSLQPLKKAVSVKPEDPYLKVLLA 222
Cdd:COG0457    83 --------GLALQALG--RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYD-EAIEAYERALELDPDDADALYNLG 151

                         170
                  ....*....|....*....
gi 1375023107 223 LKLQDLRKTDEAEKHIKEA 241
Cdd:COG0457   152 IALEKLGRYEEALELLEKL 170
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 63-353 6.06e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 58.56  E-value: 6.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107  63 HNLLAYVRHLKGQQDEALQSLKEAealiqsEQLSKRSLATWGNCAWLHYHRGSLAEAQVYLDKVEKVCKefSSPFRYRLE 142
Cdd:TIGR02917 196 LLLKGDLLLSLGNIELALAAYRKA------IALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP--NSPLAHYLK 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 143 caemdceegwALRKCGSQNYTRAMACFERALKVEPENPE--YNAGYadVAYHLDYYDgNSLQPLKKAVSVKPEDPYLKVL 220
Cdd:TIGR02917 268 ----------ALVDFQKKNYEDARETLQDALKSAPEYLPalLLAGA--SEYQLGNLE-QAYQYLNQILKYAPNSHQARRL 334

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 221 LALKLQDLRKTDEAEKHIKEATLTISSQNNIFGYVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHKTQffqm 300
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ---- 410

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1375023107 301 kkatsreNRKRAdqschlAICHFKKTLELKPTYDRAYIDLAEVYAKNHQQKEA 353
Cdd:TIGR02917 411 -------GDPSE------AIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 159-419 4.67e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.07  E-value: 4.67e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 159 SQNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDgNSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHI 238
Cdd:COG2956    21 NGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYD-RAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 239 KEATLTISSQNNIFGYVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHktqffqmkkatsrENRKRADQschl 318
Cdd:COG2956   100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY-------------LEQGDYDE---- 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 319 AICHFKKTLELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEVLSMsnlgDYMQQEIHFRYGNFqqYYKKSE-EAAITHYL 397
Cdd:COG2956   163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ----DPDYLPALPRLAEL--YEKLGDpEEALELLR 236

                         250       260
                  ....*....|....*....|..
gi 1375023107 398 KGLKIEVTSHYRDKLLKALEEL 419
Cdd:COG2956   237 KALELDPSDDLLLALADLLERK 258
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
151-293 1.62e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 67.34  E-value: 1.62e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 151 GWALRKCGsqNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDGnSLQPLKKAVSVKPEDPYLKVLLALKLQDLRK 230
Cdd:COG0457    15 GLAYRRLG--RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEE-ALADYEQALELDPDDAEALNNLGLALQALGR 91

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1375023107 231 TDEAEKHIKEAtLTISSQN-NIFGYVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCH 293
Cdd:COG0457    92 YEEALEDYDKA-LELDPDDaEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
173-359 8.05e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.03  E-value: 8.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 173 LKVEPENPEYNAGYADVAYHLDYYDGnSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHIKEAtLTISSQN-NI 251
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEE-AIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQA-LELDPDDaEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 252 FGYVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHktqffqmkkatsrENRKRADQschlAICHFKKTLELKP 331
Cdd:COG0457    79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLAL-------------LELGRYDE----AIEAYERALELDP 141

                         170       180
                  ....*....|....*....|....*...
gi 1375023107 332 TYDRAYIDLAEVYAKNHQQKEAEDNFQE 359
Cdd:COG0457   142 DDADALYNLGIALEKLGRYEEALELLEK 169
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 72-361 3.18e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.59  E-value: 3.18e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107  72 LKGQQDEALQSLKEAEALIQSEQLSKRSLATwgncawLHYHRGSLAEAQVYLDKVEKVCKEFsspFRYRLECAEMDCEEG 151
Cdd:COG2956    20 LNGQPDKAIDLLEEALELDPETVEAHLALGN------LYRRRGEYDRAIRIHQKLLERDPDR---AEALLELAQDYLKAG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 152 walrkcgsqNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDgNSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKT 231
Cdd:COG2956    91 ---------LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWE-KAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 232 DEAEKHIKEAtLTISSQN-NIFGYVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHktqffqmkkatsrENRK 310
Cdd:COG2956   161 DEAIEALEKA-LKLDPDCaRALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY-------------EKLG 226

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1375023107 311 RADQschlAICHFKKTLELKPTyDRAYIDLAEVYAKNHQQKEAEDNFQEVL 361
Cdd:COG2956   227 DPEE----ALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQL 272
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 190-435 3.40e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.40  E-value: 3.40e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 190 AYHLDYYDGNSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHIKEATLTISSQNNIFGYVAKFYRRKGCVEEAL 269
Cdd:COG3914    19 AAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEAL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 270 GFLKKALETKPSSPYLHFQIGLCHKTQffqmkkatsrenrKRADQschlAICHFKKTLELKPTYDRAYIDLAEVYAKNHQ 349
Cdd:COG3914    99 ALYRRALALNPDNAEALFNLGNLLLAL-------------GRLEE----ALAALRRALALNPDFAEAYLNLGEALRRLGR 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 350 QKEAEDNFQEVLSMsnlgDYMQQEIHFRYGNFQQYYKKSEEaAITHYLKGLKIEVTS-HYRDKLLKALEELAEGRKEDHV 428
Cdd:COG3914   162 LEEAIAALRRALEL----DPDNAEALNNLGNALQDLGRLEE-AIAAYRRALELDPDNaDAHSNLLFALRQACDWEVYDRF 236


                  ....*..
gi 1375023107 429 LESLSLL 435
Cdd:COG3914   237 EELLAAL 243
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 142-280 4.82e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.59  E-value: 4.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 142 ECAEMDCEEGWALRKCGsqNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDGnSLQPLKKAVSVKPEDPYLKVLL 221
Cdd:COG4783     2 ACAEALYALAQALLLAG--DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDE-AIVLLHEALELDPDEPEARLNL 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1375023107 222 ALKLQDLRKTDEAEKHIKEATLTISSQNNIFGYVAKFYRRKGCVEEALGFLKKALETKP 280
Cdd:COG4783    79 GLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 220-459 1.30e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.05  E-value: 1.30e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 220 LLALKLQDLRKTDEAEKHIKEATLTISSQNNIFGYVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHKTQffq 299
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA--- 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 300 mkkatsrenrKRADQschlAICHFKKTLELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEVLSMSnlgdymQQEIHFRYG 379
Cdd:COG2956    90 ----------GLLDR----AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG------PENAHAYCE 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 380 NFQQYYKKSE-EAAITHYLKGLKIEVtSHYRDKLLKALEELAEGRKED-------------HVLESLSLLGLVCRLRGDT 445
Cdd:COG2956   150 LAELYLEQGDyDEAIEALEKALKLDP-DCARALLLLAELYLEQGDYEEaiaaleraleqdpDYLPALPRLAELYEKLGDP 228

                         250
                  ....*....|....
gi 1375023107 446 SEAMSCYEKALRLT 459
Cdd:COG2956   229 EEALELLRKALELD 242
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
63-241 2.95e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.41  E-value: 2.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107  63 HNLLAYVRHLKGQQDEALQSLKEAEAliqseqLSKRSLATWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEFSSPFRYRle 142
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALE------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL-- 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 143 caemdceeGWALRKCGsqNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDgNSLQPLKKAVSVKPEDPYLKVLLA 222
Cdd:COG0457    83 --------GLALQALG--RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYD-EAIEAYERALELDPDDADALYNLG 151

                         170
                  ....*....|....*....
gi 1375023107 223 LKLQDLRKTDEAEKHIKEA 241
Cdd:COG0457   152 IALEKLGRYEEALELLEKL 170
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 63-279 9.43e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.36  E-value: 9.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107  63 HNLLAYVRHLKGQQDEALQSLKEAEALIQSEQLSKRSLATwgncawLHYHRGSLAEAQVYLDKVEKVCKEfSSPFRYRLe 142
Cdd:COG2956    79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAE------IYEQEGDWEKAIEVLERLLKLGPE-NAHAYCEL- 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 143 caemdceegwALRKCGSQNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDgNSLQPLKKAVSVKPEDPYLKVLLA 222
Cdd:COG2956   151 ----------AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYE-EAIAALERALEQDPDYLPALPRLA 219

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1375023107 223 LKLQDLRKTDEAEKHIKEAtLTISSQNNIFGYVAKFYRRKGCVEEALGFLKKALETK 279
Cdd:COG2956   220 ELYEKLGDPEEALELLRKA-LELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 63-353 6.06e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 58.56  E-value: 6.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107  63 HNLLAYVRHLKGQQDEALQSLKEAealiqsEQLSKRSLATWGNCAWLHYHRGSLAEAQVYLDKVEKVCKefSSPFRYRLE 142
Cdd:TIGR02917 196 LLLKGDLLLSLGNIELALAAYRKA------IALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP--NSPLAHYLK 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 143 caemdceegwALRKCGSQNYTRAMACFERALKVEPENPE--YNAGYadVAYHLDYYDgNSLQPLKKAVSVKPEDPYLKVL 220
Cdd:TIGR02917 268 ----------ALVDFQKKNYEDARETLQDALKSAPEYLPalLLAGA--SEYQLGNLE-QAYQYLNQILKYAPNSHQARRL 334

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 221 LALKLQDLRKTDEAEKHIKEATLTISSQNNIFGYVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHKTQffqm 300
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ---- 410

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1375023107 301 kkatsreNRKRAdqschlAICHFKKTLELKPTYDRAYIDLAEVYAKNHQQKEA 353
Cdd:TIGR02917 411 -------GDPSE------AIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 254-466 1.24e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.89  E-value: 1.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 254 YVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHktqffqmkkatsrENRKRADQschlAICHFKKTLELKPTY 333
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLY-------------RRRGEYDR----AIRIHQKLLERDPDR 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 334 DRAYIDLAEVYAKNHQQKEAEDNFQEVLSMsnlgDYMQQEIHFRYGNFQQYYKKSEEaAITHYLKGLKI-EVTSHY---- 408
Cdd:COG2956    76 AEALLELAQDYLKAGLLDRAEELLEKLLEL----DPDDAEALRLLAEIYEQEGDWEK-AIEVLERLLKLgPENAHAycel 150

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1375023107 409 ------RDKLLKALEELAEGRKED-HVLESLSLLGLVCRLRGDTSEAMSCYEKALRLtgavNPEF 466
Cdd:COG2956   151 aelyleQGDYDEAIEALEKALKLDpDCARALLLLAELYLEQGDYEEAIAALERALEQ----DPDY 211
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 221-364 2.06e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.89  E-value: 2.06e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 221 LALKLQDLRKTDEAEKHIKEATLTISSQNNIFGYVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHktqffqm 300
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL------- 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1375023107 301 kkatsrENRKRADQschlAICHFKKTLELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEVLSMS 364
Cdd:COG4783    83 ------LKAGDYDE----ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 160-241 2.41e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 2.41e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 160 QNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDGnSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHIK 239
Cdd:COG4235    31 GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEE-AEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQ 109


                  ..
gi 1375023107 240 EA 241
Cdd:COG4235   110 KL 111
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 164-283 2.95e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 2.95e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 164 RAMACFERALKVEPENPEYNAGYADVAYHLDYYDgNSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHIKEAtL 243
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYD-EALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA-L 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1375023107 244 TISSQN-NIFGYVAKFYRRKGCVEEALGFLKKALETKPSSP 283
Cdd:COG4235    79 ALDPDNpEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
259-465 3.79e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.24  E-value: 3.79e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 259 YRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHktqffqmkkatsrENRKRADQschlAICHFKKTLELKPTYDRAYI 338
Cdd:COG0457    18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAY-------------LRLGRYEE----ALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 339 DLAEVYAKNHQQKEAEDNFQEVLSMsnlgDYMQQEIHFRYGNFQQYYKKSEEAaITHYLKGLKIEvtshyrdkllkalee 418
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALEL----DPDDAEALYNLGLALLELGRYDEA-IEAYERALELD--------------- 140

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1375023107 419 laegrkeDHVLESLSLLGLVCRLRGDTSEAMSCYEKALRLTGAVNPE 465
Cdd:COG0457   141 -------PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
102-277 7.37e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.47  E-value: 7.37e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 102 TWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEFSSPFRYRlecaemdceeGWALRKCGsqNYTRAMACFERALKVEPENPE 181
Cdd:COG0457    10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL----------GLAYLRLG--RYEEALADYEQALELDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 182 YNAGYADVAYHLDYYDGnSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHIKEAtLTISSQN-NIFGYVAKFYR 260
Cdd:COG0457    78 ALNNLGLALQALGRYEE-ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERA-LELDPDDaDALYNLGIALE 155

                         170
                  ....*....|....*..
gi 1375023107 261 RKGCVEEALGFLKKALE 277
Cdd:COG0457   156 KLGRYEEALELLEKLEA 172
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 66-214 1.12e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.96  E-value: 1.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107  66 LAYVRHLKGQQDEALQSLKEAEaliqseQLSKRSLATWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEfSSPFRYRLecae 145
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKAL------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD-EPEARLNL---- 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1375023107 146 mdceeGWALRKCGsqNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDGnSLQPLKKAVSVKPED 214
Cdd:COG4783    79 -----GLALLKAG--DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE-AIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 66-458 1.70e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.93  E-value: 1.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107  66 LAYVRhlKGQQDEALQSLKEAEAliqsEQlsKRSLATWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEFsspFRYRLECAE 145
Cdd:TIGR02917 439 LSYLR--SGQFDKALAAAKKLEK----KQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF---FPAAANLAR 507

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 146 MDCEEGwalrkcgsqNYTRAMACFERALKVEPENPEYNAGYADVaYHLDYYDGNSLQPLKKAVSVKPEDPYLKVLLALKL 225
Cdd:TIGR02917 508 IDIQEG---------NPDDAIQRFEKVLTIDPKNLRAILALAGL-YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 226 QDLRKTDEAEKHIKEATLTISSQNNIFGYVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIglchkTQFFQMKKats 305
Cdd:TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL-----ADAYAVMK--- 649

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 306 reNRKRADQSchlaichFKKTLELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEVLS---MSNLGDYMQQEIHFRYGNFQ 382
Cdd:TIGR02917 650 --NYAKAITS-------LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKqhpKAALGFELEGDLYLRQKDYP 720

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 383 QyykkseeaAITHYLKGLKIEVTSHYRDKLLKALeeLAEGRK---------------EDHVLesLSLLGLVCRLRGDTSE 447
Cdd:TIGR02917 721 A--------AIQAYRKALKRAPSSQNAIKLHRAL--LASGNTaeavktleawlkthpNDAVL--RTALAELYLAQKDYDK 788

                         410
                  ....*....|.
gi 1375023107 448 AMSCYEKALRL 458
Cdd:TIGR02917 789 AIKHYQTVVKK 799
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 319-458 1.71e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.84  E-value: 1.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 319 AICHFKKTLELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEVLSMSnlGDYMqqEIHFRYGNFqqYYKKSE-EAAITHYL 397
Cdd:COG3914    97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN--PDFA--EAYLNLGEA--LRRLGRlEEAIAALR 170

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1375023107 398 KGLKIevtshyrdkllkaleelaegrKEDHVlESLSLLGLVCRLRGDTSEAMSCYEKALRL 458
Cdd:COG3914   171 RALEL---------------------DPDNA-EALNNLGNALQDLGRLEEAIAAYRRALEL 209
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 52-277 2.12e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.46  E-value: 2.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107  52 EFRDPIYSIGMHNLLAYVRHLKGQQDEALQSLKEAEALIQSEQLSKRSLATWGN-CAWLHYHRGSLAEAQVYLDKVEKVc 130
Cdd:COG3914    29 AAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLElAALLLQALGRYEEALALYRRALAL- 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 131 kefsSPfryrlECAEMDCEEGWALRKcgSQNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDgNSLQPLKKAVSV 210
Cdd:COG3914   108 ----NP-----DNAEALFNLGNLLLA--LGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE-EAIAALRRALEL 175

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1375023107 211 KPEDPYLKVLLALKLQDLRKTDEAEKHIKEATLTISSQNNIFGYVAkFYRRKGCVEEALGFLKKALE 277
Cdd:COG3914   176 DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLL-FALRQACDWEVYDRFEELLA 241
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
161-241 8.90e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 8.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 161 NYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDgnSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHIKE 240
Cdd:COG3063     7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYD--EAIALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                  .
gi 1375023107 241 A 241
Cdd:COG3063    85 A 85
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 161-241 2.26e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 2.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 161 NYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDGnSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHIKE 240
Cdd:COG5010    69 DFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE-AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147


                  .
gi 1375023107 241 A 241
Cdd:COG5010   148 A 148
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 201-367 6.70e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.11  E-value: 6.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 201 LQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHIKEATLTISSQNNIFGYVAKFYRRKGCVEEALGFLKKALETKP 280
Cdd:COG5010     6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 281 SSPYLHFQIGLCHktqffqmkkatsrENRKRADQschlAICHFKKTLELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEV 360
Cdd:COG5010    86 NNPELYYNLALLY-------------SRSGDKDE----AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                  ....*..
gi 1375023107 361 LSMSNLG 367
Cdd:COG5010   149 LGTSPLK 155
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
259-364 1.55e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 1.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 259 YRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHKtqffqmkkatsreNRKRADQschlAIcHFKKTLELKPTYDRAYI 338
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLL-------------EQGRYDE----AI-ALEKALKLDPNNAEALL 63

                          90       100
                  ....*....|....*....|....*.
gi 1375023107 339 DLAEVYAKNHQQKEAEDNFQEVLSMS 364
Cdd:COG3063    64 NLAELLLELGDYDEALAYLERALELD 89
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
259-457 4.08e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.91  E-value: 4.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 259 YRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHktqffqmkkaTSRENRKRADQSchlaichFKKTLELKPTYDRAYI 338
Cdd:COG4785    83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAY----------LLLGDYDAALED-------FDRALELDPDYAYAYL 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 339 DLAEVYAKNHQQKEAEDNFQEVLsmsnlgdymqqeihfrygnfqQYYKKSEEAAITHYLkglkievtSHYRDKLLKALEE 418
Cdd:COG4785   146 NRGIALYYLGRYELAIADLEKAL---------------------ELDPNDPERALWLYL--------AERKLDPEKALAL 196

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1375023107 419 LAEGRKEDHVLEslsllglvcrlrGDTSEAMSCYEKALR 457
Cdd:COG4785   197 LLEDWATAYLLQ------------GDTEEARELFKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 256-403 4.19e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.26  E-value: 4.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 256 AKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLChktqffqmkkatsRENRKRADQschlAICHFKKTLELKPTYDR 335
Cdd:COG4783    11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEI-------------LLQLGDLDE----AIVLLHEALELDPDEPE 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1375023107 336 AYIDLAEVYAKNHQQKEAEDNFQEVLSMsnlgDYMQQEIHFRYGNFQQYYKKSEEaAITHYLKGLKIE 403
Cdd:COG4783    74 ARLNLGLALLKAGDYDEALALLEKALKL----DPEHPEAYLRLARAYRALGRPDE-AIAALEKALELD 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 267-419 7.86e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.30  E-value: 7.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 267 EALGFLKKALETKPSSPYLHFQIGLCHktqffqmkkatsrENRKRADQschlAICHFKKTLELKPTYDRAYIDLAEVYAK 346
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAY-------------LRLGRYDE----ALAAYEKALRLDPDNADALLDLAEALLA 63

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1375023107 347 NHQQKEAEDNFQEVLSMsnlgDYMQQEIHFRYGNFQQYYKKSEEaAITHYLKGLKIEVTSHYRDKLLKALEEL 419
Cdd:COG4235    64 AGDTEEAEELLERALAL----DPDNPEALYLLGLAAFQQGDYAE-AIAAWQKLLALLPADAPARLLEASIAEA 131
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 201-338 2.33e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 2.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 201 LQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHIKEAtLTISSQN-NIFGYVAKFYRRKGCVEEALGFLKKALETK 279
Cdd:COG4235     3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKA-LRLDPDNaDALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1375023107 280 PSSPYLHFQIGLCHktqffqmkkatsrENRKRADQschlAICHFKKTLELKPTYDRAYI 338
Cdd:COG4235    82 PDNPEALYLLGLAA-------------FQQGDYAE----AIAAWQKLLALLPADAPARL 123
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 161-466 2.41e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 2.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 161 NYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDGnSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHIkE 240
Cdd:TIGR02917 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIEL-ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHA-D 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 241 ATLTISSQNNIFGYV-AKFYRRKGCVEEALGFLKKALETKPS---SPYL----HFQIG------------LCHKTQFFQM 300
Cdd:TIGR02917 252 ALLKKAPNSPLAHYLkALVDFQKKNYEDARETLQDALKSAPEylpALLLagasEYQLGnleqayqylnqiLKYAPNSHQA 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 301 KK--ATSRENRKRADQschlAICHFKKTLELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEV--LSMSNLGDYMQQEIHF 376
Cdd:TIGR02917 332 RRllASIQLRLGRVDE----AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKAteLDPENAAARTQLGISK 407

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 377 RYGNfqqyykkSEEAAITHYLKGLKIE----------VTSHYR----DKLLKALEELAEGRKEDHVLEslSLLGLVCRLR 442
Cdd:TIGR02917 408 LSQG-------DPSEAIADLETAAQLDpelgradlllILSYLRsgqfDKALAAAKKLEKKQPDNASLH--NLLGAIYLGK 478

                         330       340
                  ....*....|....*....|....
gi 1375023107 443 GDTSEAMSCYEKALRLtgavNPEF 466
Cdd:TIGR02917 479 GDLAKAREAFEKALSI----EPDF 498
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 319-458 8.85e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 8.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 319 AICHFKKTLELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEVLSMSnlGDYMqqEIHFRYGNFQQYYKKSEEAaithylk 398
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--PDNA--DALLDLAEALLAAGDTEEA------- 70

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 399 glkievtshyRDKLLKALEelaegRKEDHVlESLSLLGLVCRLRGDTSEAMSCYEKALRL 458
Cdd:COG4235    71 ----------EELLERALA-----LDPDNP-EALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 249-364 9.02e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 9.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 249 NNIFGYV--AKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHktqffqMKKATSREnrkradqschlAICHFKKT 326
Cdd:COG4235    15 NDAEGWLllGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL------LAAGDTEE-----------AEELLERA 77

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1375023107 327 LELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEVLSMS 364
Cdd:COG4235    78 LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
TPR_hemY_coli TIGR00540
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ...
 214-359 2.36e-03

heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]


Pssm-ID: 273126 [Multi-domain]  Cd Length: 367  Bit Score: 39.96  E-value: 2.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 214 DPYLKVLLALKLQDLRKTDEAEKHIKEATltissQNNIFGYVAKFYRR--KGCVEEALGFLKKALETKPSSPYLHFQIG- 290
Cdd:TIGR00540 242 EPELAVAAAEALIQLGDHDEAEKLIEEAL-----KKEWDPELLRLYGRlqPGDPSPLIKRAEKWLKKHPDDALLLLALGr 316

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1375023107 291 LCHKTQFFQmkKATSrenrkradqschlaicHFKKTLELKPTYDrAYIDLAEVYAKNHQQKEAEDNFQE 359
Cdd:TIGR00540 317 LCLRQQLWG--KAQS----------------YLEASLSLAPTEE-AHLELAQLFEQLGDTEAAAQHYRK 366
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 164-236 2.52e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 2.52e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1375023107 164 RAMACFERALKVEPENPEYNAGYADVAYHLDYYDgNSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEK 236
Cdd:TIGR02917 821 RALEYAERALKLAPNIPAILDTLGWLLVEKGEAD-RALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 63-465 2.52e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 2.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107  63 HNLLAYVRHLKGQQDEALQSLKEAeALIQSEQLSKRSLAtwgncAWLHYHRGSLAEAQVYLDKVEKVCKEFssPFRYRLe 142
Cdd:TIGR02917 264 HYLKALVDFQKKNYEDARETLQDA-LKSAPEYLPALLLA-----GASEYQLGNLEQAYQYLNQILKYAPNS--HQARRL- 334

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 143 caemdceegWALRKCGSQNYTRAMACFERALKVEPENPEY--NAGYADVAyhLDYYDgNSLQPLKKAVSVKPEDPYLKVL 220
Cdd:TIGR02917 335 ---------LASIQLRLGRVDEAIATLSPALGLDPDDPAAlsLLGEAYLA--LGDFE-KAAEYLAKATELDPENAAARTQ 402

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 221 LAL----------KLQDLRKTDEAEKHIKEATLTIssqnnIFGYVakfyrRKGCVEEALGFLKKALETKPSSPYLHFQIG 290
Cdd:TIGR02917 403 LGIsklsqgdpseAIADLETAAQLDPELGRADLLL-----ILSYL-----RSGQFDKALAAAKKLEKKQPDNASLHNLLG 472

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 291 LCHktqFFQMKKATSRENrkradqschlaichFKKTLELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEVLSMS--NLgD 368
Cdd:TIGR02917 473 AIY---LGKGDLAKAREA--------------FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpkNL-R 534

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 369 YMQQ--EIHFRYGNFQQYYKKSEEAAITHYLK-GLKIEVTSHYR-----DKLLKALEELAEGRKeDHVlESLSLLGLVCR 440
Cdd:TIGR02917 535 AILAlaGLYLRTGNEEEAVAWLEKAAELNPQEiEPALALAQYYLgkgqlKKALAILNEAADAAP-DSP-EAWLMLGRAQL 612

                         410       420
                  ....*....|....*....|....*
gi 1375023107 441 LRGDTSEAMSCYEKALrltgAVNPE 465
Cdd:TIGR02917 613 AAGDLNKAVSSFKKLL----ALQPD 633
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 170-280 3.22e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 3.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 170 ERALKVEPENPEYNAGYADVAYHLDYYDGNSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHIKEATLTISSQN 249
Cdd:COG5010    43 AAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP 122

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1375023107 250 NIFGYVAKFYRRKGCVEEALGFLKKALETKP 280
Cdd:COG5010   123 NAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 323-458 5.54e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.09  E-value: 5.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375023107 323 FKKTLELKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEVLSMSNlgdyMQQEIHFRYGNFqqYYKKSE-EAAITHYLKGLK 401
Cdd:COG4783    27 LEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP----DEPEARLNLGLA--LLKAGDyDEALALLEKALK 100

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1375023107 402 IEvtshyrdkllkaleelaegrkEDHVlESLSLLGLVCRLRGDTSEAMSCYEKALRL 458
Cdd:COG4783   101 LD---------------------PEHP-EAYLRLARAYRALGRPDEAIAALEKALEL 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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