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Conserved domains on  [gi|1371986131|ref|NP_001348587|]
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myelin transcription factor 1-like protein isoform 5 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MYT1 pfam08474
Myelin transcription factor 1; This domain is found in the myelin transcription factor 1 (MYT1) ...
 599-850 3.13e-122

Myelin transcription factor 1; This domain is found in the myelin transcription factor 1 (MYT1) of chordates. MYT1 contains C2HC zinc finger domains (pfam01530) and is expressed in developing neurons of the central nervous system where it is involved in the selection of neuronal precursor cells.


:

Pssm-ID: 462489 [Multi-domain]  Cd Length: 237  Bit Score: 375.63  E-value: 3.13e-122
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131  599 YRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDNHTYGKRAIAPKVQTRDISPKGYDDAKRYCKNASPSSSTTSSYAPSSS 678
Cdd:pfam08474    1 YRNNVPTTTPRANLAKELEKYSKTSFDYASFDAQVFGKRTLAPKVQGQDTSPKGFDAKKYFCKPSSPSSSLTSSYAPSSS 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131  679 SNLscgggssasstcsKSSFDYTHDMEAAHMAATAILNLSTRCREMPQNLSTKPQDLCTaRNPDMEVDENGTLDLSMNKQ 758
Cdd:pfam08474   81 SSS-------------SSSYDYTHDMEAAHMAATAILNLSTRCREMPENLSTKPQDLSA-KPDDIEVDENGTLDLSMKKN 146

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131  759 RPRD-SCCPVLTPLEPMSPQQQAVM-SSRCFQLSEG-DCWDLPVDYTKMKprRVDEDEPKEitPEDLDPFQEALEERRYP 835
Cdd:pfam08474  147 RPRGvTSGSVLTPLPPMSPQRQASLlNSRCYQALCAqDCWDLPVDYTKIK--RIDEEEKEE--PEDLDPFQELLEERKYP 222

                          250
                   ....*....|....*
gi 1371986131  836 GEVTIPSPKPKYPQC 850
Cdd:pfam08474  223 GEVTIPSPKPKYPPC 237
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 882-910 3.29e-17

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


:

Pssm-ID: 460240  Cd Length: 29  Bit Score: 75.65  E-value: 3.29e-17
                           10        20
                   ....*....|....*....|....*....
gi 1371986131  882 KCPTPGCDGSGHITGNYASHRSLSGCPRA 910
Cdd:pfam01530    1 KCPTPGCDGSGHVSGKYATHRSLSGCPYA 29
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 931-959 5.04e-16

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


:

Pssm-ID: 460240  Cd Length: 29  Bit Score: 72.57  E-value: 5.04e-16
                           10        20
                   ....*....|....*....|....*....
gi 1371986131  931 RCPVPGCDGQGHITGKYASHRSASGCPLA 959
Cdd:pfam01530    1 KCPTPGCDGSGHVSGKYATHRSLSGCPYA 29
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 985-1012 3.15e-15

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


:

Pssm-ID: 460240  Cd Length: 29  Bit Score: 70.25  E-value: 3.15e-15
                           10        20
                   ....*....|....*....|....*...
gi 1371986131  985 CPTPGCDGSGHVSGSFLTHRSLSGCPRA 1012
Cdd:pfam01530    2 CPTPGCDGSGHVSGKYATHRSLSGCPYA 29
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 483-509 2.33e-14

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


:

Pssm-ID: 460240  Cd Length: 29  Bit Score: 67.56  E-value: 2.33e-14
                           10        20
                   ....*....|....*....|....*..
gi 1371986131  483 KCPTPGCDGTGHVTGLYPHHRSLSGCP 509
Cdd:pfam01530    1 KCPTPGCDGSGHVSGKYATHRSLSGCP 27
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 527-555 2.37e-14

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


:

Pssm-ID: 460240  Cd Length: 29  Bit Score: 67.56  E-value: 2.37e-14
                           10        20
                   ....*....|....*....|....*....
gi 1371986131  527 KCPTPGCTGRGHVNSNRNSHRSLSGCPIA 555
Cdd:pfam01530    1 KCPTPGCDGSGHVSGKYATHRSLSGCPYA 29
EnvC super family cl34844
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1038-1163 4.10e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG4942:

Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.98  E-value: 4.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131 1038 ENDEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESLLHELANLSQSLIHSLANIqlph 1117
Cdd:COG4942     24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL---- 99

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1371986131 1118 mdpinEQNFDAYVTTLTEMYTNQdryQSPENKALL--ENIKQAVRGIQ 1163
Cdd:COG4942    100 -----EAQKEELAELLRALYRLG---RQPPLALLLspEDFLDAVRRLQ 139
 
Name Accession Description Interval E-value
MYT1 pfam08474
Myelin transcription factor 1; This domain is found in the myelin transcription factor 1 (MYT1) ...
 599-850 3.13e-122

Myelin transcription factor 1; This domain is found in the myelin transcription factor 1 (MYT1) of chordates. MYT1 contains C2HC zinc finger domains (pfam01530) and is expressed in developing neurons of the central nervous system where it is involved in the selection of neuronal precursor cells.


Pssm-ID: 462489 [Multi-domain]  Cd Length: 237  Bit Score: 375.63  E-value: 3.13e-122
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131  599 YRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDNHTYGKRAIAPKVQTRDISPKGYDDAKRYCKNASPSSSTTSSYAPSSS 678
Cdd:pfam08474    1 YRNNVPTTTPRANLAKELEKYSKTSFDYASFDAQVFGKRTLAPKVQGQDTSPKGFDAKKYFCKPSSPSSSLTSSYAPSSS 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131  679 SNLscgggssasstcsKSSFDYTHDMEAAHMAATAILNLSTRCREMPQNLSTKPQDLCTaRNPDMEVDENGTLDLSMNKQ 758
Cdd:pfam08474   81 SSS-------------SSSYDYTHDMEAAHMAATAILNLSTRCREMPENLSTKPQDLSA-KPDDIEVDENGTLDLSMKKN 146

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131  759 RPRD-SCCPVLTPLEPMSPQQQAVM-SSRCFQLSEG-DCWDLPVDYTKMKprRVDEDEPKEitPEDLDPFQEALEERRYP 835
Cdd:pfam08474  147 RPRGvTSGSVLTPLPPMSPQRQASLlNSRCYQALCAqDCWDLPVDYTKIK--RIDEEEKEE--PEDLDPFQELLEERKYP 222

                          250
                   ....*....|....*
gi 1371986131  836 GEVTIPSPKPKYPQC 850
Cdd:pfam08474  223 GEVTIPSPKPKYPPC 237
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 882-910 3.29e-17

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


Pssm-ID: 460240  Cd Length: 29  Bit Score: 75.65  E-value: 3.29e-17
                           10        20
                   ....*....|....*....|....*....
gi 1371986131  882 KCPTPGCDGSGHITGNYASHRSLSGCPRA 910
Cdd:pfam01530    1 KCPTPGCDGSGHVSGKYATHRSLSGCPYA 29
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 931-959 5.04e-16

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


Pssm-ID: 460240  Cd Length: 29  Bit Score: 72.57  E-value: 5.04e-16
                           10        20
                   ....*....|....*....|....*....
gi 1371986131  931 RCPVPGCDGQGHITGKYASHRSASGCPLA 959
Cdd:pfam01530    1 KCPTPGCDGSGHVSGKYATHRSLSGCPYA 29
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 985-1012 3.15e-15

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


Pssm-ID: 460240  Cd Length: 29  Bit Score: 70.25  E-value: 3.15e-15
                           10        20
                   ....*....|....*....|....*...
gi 1371986131  985 CPTPGCDGSGHVSGSFLTHRSLSGCPRA 1012
Cdd:pfam01530    2 CPTPGCDGSGHVSGKYATHRSLSGCPYA 29
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 483-509 2.33e-14

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


Pssm-ID: 460240  Cd Length: 29  Bit Score: 67.56  E-value: 2.33e-14
                           10        20
                   ....*....|....*....|....*..
gi 1371986131  483 KCPTPGCDGTGHVTGLYPHHRSLSGCP 509
Cdd:pfam01530    1 KCPTPGCDGSGHVSGKYATHRSLSGCP 27
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 527-555 2.37e-14

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


Pssm-ID: 460240  Cd Length: 29  Bit Score: 67.56  E-value: 2.37e-14
                           10        20
                   ....*....|....*....|....*....
gi 1371986131  527 KCPTPGCTGRGHVNSNRNSHRSLSGCPIA 555
Cdd:pfam01530    1 KCPTPGCDGSGHVSGKYATHRSLSGCPYA 29
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1038-1163 4.10e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.98  E-value: 4.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131 1038 ENDEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESLLHELANLSQSLIHSLANIqlph 1117
Cdd:COG4942     24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL---- 99

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1371986131 1118 mdpinEQNFDAYVTTLTEMYTNQdryQSPENKALL--ENIKQAVRGIQ 1163
Cdd:COG4942    100 -----EAQKEELAELLRALYRLG---RQPPLALLLspEDFLDAVRRLQ 139
CCDC22 pfam05667
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ...
 1017-1095 9.11e-04

Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.


Pssm-ID: 461708 [Multi-domain]  Cd Length: 600  Bit Score: 43.48  E-value: 9.11e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1371986131 1017 KKAKLSGEQMLTIKQRASNGIENDEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESL 1095
Cdd:pfam05667  304 EKLQFTNEAPAATSSPPTKVETEEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEEL 382
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1038-1116 1.37e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 42.70  E-value: 1.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131 1038 ENDEEIKQLDEEIKELNESNSQM-------EADMIKLRTQITTMESNLKTIEEENKVIEQQNESLLHELANL---SQSLI 1107
Cdd:TIGR04523  565 EKNKEIEELKQTQKSLKKKQEEKqelidqkEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIkskKNKLK 644


                   ....*....
gi 1371986131 1108 HSLANIQLP 1116
Cdd:TIGR04523  645 QEVKQIKET 653
Atg16_CCD cd22887
Coiled-coiled domain of autophagy-related 16 (Atg16) family proteins; The Atg16 family ...
 1040-1086 3.26e-03

Coiled-coiled domain of autophagy-related 16 (Atg16) family proteins; The Atg16 family includes Saccharomyces cerevisiae Atg16 (also called cytoplasm to vacuole targeting protein 11, CVT11, or SAP18), human autophagy-related protein 16-1 (also called APG16-like 1, ATG16L1, or APG16L) and autophagy-related protein 16-2 (also called APG16-like 2, ATG16L2, WD repeat-containing protein 80 or WDR80), and similar proteins. Atg16 stabilizes the Atg5-Atg12 conjugate and mediates the formation of the 350 kDa complex, which is necessary for autophagy. The Atg5-Atg12/Atg16 complex is required for efficient promotion of Atg8-conjugation to phosphatidylethanolamine and Atg8 localization to the pre-autophagosomal structure (PAS). Similarly, human ATG16L1 plays an essential role in autophagy and acts as a molecular scaffold which mediates protein-protein interactions essential for autophagosome formation. ATG16L2, though structurally similar to ATG16L1 and able to form a complex with the autophagy proteins Atg5 and Atg12, is not essential for autophagy. Single-nucleotide polymorphisms in ATG16L1 is associated with an increased risk of developing Crohn disease. Saccharomyces cerevisiae Atg16 contains an N-terminal domain (NTD) that interacts with the Atg5-Atg12 protein conjugate and a coiled-coil domain (CCD) that dimerizes and mediates self-assembly. Human ATG16L1 and ATG16L2 also contains an N-terminal region that binds Atg5, a CCD homologous to the yeast CCD, and a WD40 domain that represents approximately 50% of the full-length protein. This model corresponds to the CCD of Atg16 family proteins.


Pssm-ID: 439196 [Multi-domain]  Cd Length: 91  Bit Score: 37.93  E-value: 3.26e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1371986131 1040 DEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENK 1086
Cdd:cd22887     24 EEEIKDLEEELKEKNKANEILNDELIALQIENNLLEEKLRKLQEEND 70
 
Name Accession Description Interval E-value
MYT1 pfam08474
Myelin transcription factor 1; This domain is found in the myelin transcription factor 1 (MYT1) ...
 599-850 3.13e-122

Myelin transcription factor 1; This domain is found in the myelin transcription factor 1 (MYT1) of chordates. MYT1 contains C2HC zinc finger domains (pfam01530) and is expressed in developing neurons of the central nervous system where it is involved in the selection of neuronal precursor cells.


Pssm-ID: 462489 [Multi-domain]  Cd Length: 237  Bit Score: 375.63  E-value: 3.13e-122
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131  599 YRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDNHTYGKRAIAPKVQTRDISPKGYDDAKRYCKNASPSSSTTSSYAPSSS 678
Cdd:pfam08474    1 YRNNVPTTTPRANLAKELEKYSKTSFDYASFDAQVFGKRTLAPKVQGQDTSPKGFDAKKYFCKPSSPSSSLTSSYAPSSS 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131  679 SNLscgggssasstcsKSSFDYTHDMEAAHMAATAILNLSTRCREMPQNLSTKPQDLCTaRNPDMEVDENGTLDLSMNKQ 758
Cdd:pfam08474   81 SSS-------------SSSYDYTHDMEAAHMAATAILNLSTRCREMPENLSTKPQDLSA-KPDDIEVDENGTLDLSMKKN 146

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131  759 RPRD-SCCPVLTPLEPMSPQQQAVM-SSRCFQLSEG-DCWDLPVDYTKMKprRVDEDEPKEitPEDLDPFQEALEERRYP 835
Cdd:pfam08474  147 RPRGvTSGSVLTPLPPMSPQRQASLlNSRCYQALCAqDCWDLPVDYTKIK--RIDEEEKEE--PEDLDPFQELLEERKYP 222

                          250
                   ....*....|....*
gi 1371986131  836 GEVTIPSPKPKYPQC 850
Cdd:pfam08474  223 GEVTIPSPKPKYPPC 237
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 882-910 3.29e-17

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


Pssm-ID: 460240  Cd Length: 29  Bit Score: 75.65  E-value: 3.29e-17
                           10        20
                   ....*....|....*....|....*....
gi 1371986131  882 KCPTPGCDGSGHITGNYASHRSLSGCPRA 910
Cdd:pfam01530    1 KCPTPGCDGSGHVSGKYATHRSLSGCPYA 29
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 931-959 5.04e-16

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


Pssm-ID: 460240  Cd Length: 29  Bit Score: 72.57  E-value: 5.04e-16
                           10        20
                   ....*....|....*....|....*....
gi 1371986131  931 RCPVPGCDGQGHITGKYASHRSASGCPLA 959
Cdd:pfam01530    1 KCPTPGCDGSGHVSGKYATHRSLSGCPYA 29
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 985-1012 3.15e-15

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


Pssm-ID: 460240  Cd Length: 29  Bit Score: 70.25  E-value: 3.15e-15
                           10        20
                   ....*....|....*....|....*...
gi 1371986131  985 CPTPGCDGSGHVSGSFLTHRSLSGCPRA 1012
Cdd:pfam01530    2 CPTPGCDGSGHVSGKYATHRSLSGCPYA 29
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 483-509 2.33e-14

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


Pssm-ID: 460240  Cd Length: 29  Bit Score: 67.56  E-value: 2.33e-14
                           10        20
                   ....*....|....*....|....*..
gi 1371986131  483 KCPTPGCDGTGHVTGLYPHHRSLSGCP 509
Cdd:pfam01530    1 KCPTPGCDGSGHVSGKYATHRSLSGCP 27
zf-C2HC pfam01530
Zinc finger, C2HC type; This is a DNA binding zinc finger domain.
 527-555 2.37e-14

Zinc finger, C2HC type; This is a DNA binding zinc finger domain.


Pssm-ID: 460240  Cd Length: 29  Bit Score: 67.56  E-value: 2.37e-14
                           10        20
                   ....*....|....*....|....*....
gi 1371986131  527 KCPTPGCTGRGHVNSNRNSHRSLSGCPIA 555
Cdd:pfam01530    1 KCPTPGCDGSGHVSGKYATHRSLSGCPYA 29
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1038-1163 4.10e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.98  E-value: 4.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131 1038 ENDEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESLLHELANLSQSLIHSLANIqlph 1117
Cdd:COG4942     24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL---- 99

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1371986131 1118 mdpinEQNFDAYVTTLTEMYTNQdryQSPENKALL--ENIKQAVRGIQ 1163
Cdd:COG4942    100 -----EAQKEELAELLRALYRLG---RQPPLALLLspEDFLDAVRRLQ 139
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1024-1104 5.07e-04

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 43.74  E-value: 5.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131 1024 EQMLTIKQRASngiENDEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESLLHELANLS 1103
Cdd:COG4372    101 EELESLQEEAE---ELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALS 177


                   .
gi 1371986131 1104 Q 1104
Cdd:COG4372    178 E 178
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1041-1106 7.12e-04

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 43.35  E-value: 7.12e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1371986131 1041 EEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESLLHELANLSQSL 1106
Cdd:COG4372     80 EELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEI 145
CCDC22 pfam05667
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ...
 1017-1095 9.11e-04

Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.


Pssm-ID: 461708 [Multi-domain]  Cd Length: 600  Bit Score: 43.48  E-value: 9.11e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1371986131 1017 KKAKLSGEQMLTIKQRASNGIENDEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESL 1095
Cdd:pfam05667  304 EKLQFTNEAPAATSSPPTKVETEEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEEL 382
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1038-1116 1.37e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 42.70  E-value: 1.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131 1038 ENDEEIKQLDEEIKELNESNSQM-------EADMIKLRTQITTMESNLKTIEEENKVIEQQNESLLHELANL---SQSLI 1107
Cdd:TIGR04523  565 EKNKEIEELKQTQKSLKKKQEEKqelidqkEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIkskKNKLK 644


                   ....*....
gi 1371986131 1108 HSLANIQLP 1116
Cdd:TIGR04523  645 QEVKQIKET 653
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1041-1105 1.62e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 42.20  E-value: 1.62e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1371986131 1041 EEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESLLHELANLSQS 1105
Cdd:COG4372     66 EELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQ 130
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1028-1107 2.15e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 42.31  E-value: 2.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131 1028 TIKQRASNGIENDEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENK-------VIEQQNESLLHELA 1100
Cdd:TIGR04523  350 ELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQqkdeqikKLQQEKELLEKEIE 429


                   ....*..
gi 1371986131 1101 NLSQSLI 1107
Cdd:TIGR04523  430 RLKETII 436
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1041-1106 2.30e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.81  E-value: 2.30e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1371986131 1041 EEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESLLHELANLSQSL 1106
Cdd:COG4372    108 EEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQEL 173
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1038-1106 2.90e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.43  E-value: 2.90e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1371986131 1038 ENDEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESLLHELANLSQSL 1106
Cdd:COG4372     70 QARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQI 138
Atg16_CCD cd22887
Coiled-coiled domain of autophagy-related 16 (Atg16) family proteins; The Atg16 family ...
 1040-1086 3.26e-03

Coiled-coiled domain of autophagy-related 16 (Atg16) family proteins; The Atg16 family includes Saccharomyces cerevisiae Atg16 (also called cytoplasm to vacuole targeting protein 11, CVT11, or SAP18), human autophagy-related protein 16-1 (also called APG16-like 1, ATG16L1, or APG16L) and autophagy-related protein 16-2 (also called APG16-like 2, ATG16L2, WD repeat-containing protein 80 or WDR80), and similar proteins. Atg16 stabilizes the Atg5-Atg12 conjugate and mediates the formation of the 350 kDa complex, which is necessary for autophagy. The Atg5-Atg12/Atg16 complex is required for efficient promotion of Atg8-conjugation to phosphatidylethanolamine and Atg8 localization to the pre-autophagosomal structure (PAS). Similarly, human ATG16L1 plays an essential role in autophagy and acts as a molecular scaffold which mediates protein-protein interactions essential for autophagosome formation. ATG16L2, though structurally similar to ATG16L1 and able to form a complex with the autophagy proteins Atg5 and Atg12, is not essential for autophagy. Single-nucleotide polymorphisms in ATG16L1 is associated with an increased risk of developing Crohn disease. Saccharomyces cerevisiae Atg16 contains an N-terminal domain (NTD) that interacts with the Atg5-Atg12 protein conjugate and a coiled-coil domain (CCD) that dimerizes and mediates self-assembly. Human ATG16L1 and ATG16L2 also contains an N-terminal region that binds Atg5, a CCD homologous to the yeast CCD, and a WD40 domain that represents approximately 50% of the full-length protein. This model corresponds to the CCD of Atg16 family proteins.


Pssm-ID: 439196 [Multi-domain]  Cd Length: 91  Bit Score: 37.93  E-value: 3.26e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1371986131 1040 DEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENK 1086
Cdd:cd22887     24 EEEIKDLEEELKEKNKANEILNDELIALQIENNLLEEKLRKLQEEND 70
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1029-1163 4.90e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.52  E-value: 4.90e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131 1029 IKQRASNGIENDEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQQNESLLHELANLSQSLIH 1108
Cdd:COG4942     36 IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYR 115

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1371986131 1109 SLANIQLPHMdpINEQNFDAYVTTLTEMytnqdRYQSPENKALLENIKQAVRGIQ 1163
Cdd:COG4942    116 LGRQPPLALL--LSPEDFLDAVRRLQYL-----KYLAPARREQAEELRADLAELA 163
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
1015-1106 9.46e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.14  E-value: 9.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371986131 1015 AMKKAKLSGEQMLTIKQRASNGIENDEEIKQLDEEIKEL---NESNSQMEADMIKLRTQITTMESNLKTIEEENKVIEQ- 1090
Cdd:COG4717     45 AMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAeekEEEYAELQEELEELEEELEELEAELEELREELEKLEKl 124

                           90
                   ....*....|....*..
gi 1371986131 1091 -QNESLLHELANLSQSL 1106
Cdd:COG4717    125 lQLLPLYQELEALEAEL 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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