|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
260-602 |
4.22e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 4.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 260 QQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQ 339
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELE----ELEAELAELEAELEELR-LELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 340 AEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEELGAV 419
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE-AELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 420 RLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEE 499
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 500 SLQQQQQEQEETLKLCRE-----EHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQevkdtVDGQRILEKKGSA 574
Cdd:COG1196 454 LEEEEEALLELLAELLEEaalleAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-----LAGLRGLAGAVAV 528
|
330 340
....*....|....*....|....*...
gi 1317886153 575 VLKDLKRqlhLERKRADKLQERLQEILT 602
Cdd:COG1196 529 LIGVEAA---YEAALEAALAAALQNIVV 553
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
189-495 |
4.29e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 4.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 189 ELKWEMEREEKKLLWEQLQGLesskQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKEAdLK 268
Cdd:COG1196 217 ELKEELKELEAELLLLKLREL----EAELEELEAELEELEAELEELEAELAELEAELEEL----RLELEELELELEE-AQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 269 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNmLREQTSELASELQHRQAEYEELMGQ 348
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE-LEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 349 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL--AMETLQEKSQHKEELGAVRLRHEKE 426
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLeeELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 427 LLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDG-AKGWFERRLK 495
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGfLEGVKAALLL 516
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
256-558 |
5.61e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 5.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 256 IEELQQRKEAdLKAQlART----QKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSEL 331
Cdd:COG1196 195 LGELERQLEP-LERQ-AEKaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 332 ASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQ 411
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE-EELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 412 HKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQvhsmdgakgwfe 491
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL------------ 419
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1317886153 492 RRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEV 558
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
260-602 |
1.09e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.48 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 260 QQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTaktqelnmLREQTSELASELQHRQ 339
Cdd:TIGR02168 220 AELRELELALLVLRLEELREELEELQEELKEAEEELE----ELTAELQELEEKLEE--------LRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 340 AEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAV 419
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 420 RLRHEKeLLGVRARYERELRELHEdKKRQEEELRGQIREEKARtreLENLQHTVEELQAQVhsmdgakgwfERRLKEAEE 499
Cdd:TIGR02168 368 EELESR-LEELEEQLETLRSKVAQ-LELQIASLNNEIERLEAR---LERLEDRRERLQQEI----------EELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 500 SLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVlkdl 579
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV---- 508
|
330 340
....*....|....*....|...
gi 1317886153 580 kRQLHLERKRADKLQERLQEILT 602
Cdd:TIGR02168 509 -KALLKNQSGLSGILGVLSELIS 530
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
196-717 |
5.47e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.25 E-value: 5.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 196 REEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESfcRLQTEKETLFNDSRNKIEELQQRKEADLK---AQLA 272
Cdd:PTZ00121 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAKKKADAAKKKAEEAKKaaeAAKA 1350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 273 RTQKLQQELEAANQSlAELRDQRQGERLEHAAALRALQDQIQtaKTQELNMLREQTSELASELQHRQAEYE--------- 343
Cdd:PTZ00121 1351 EAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKAEEKK--KADEAKKKAEEDKKKADELKKAAAAKKkadeakkka 1427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 344 ELMGQKDDLNSQLQESLRANSrlLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQH-KEELGAVRLR 422
Cdd:PTZ00121 1428 EEKKKADEAKKKAEEAKKADE--AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEaKKKADEAKKA 1505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 423 HEKELLGVRARYERELRELHEDKKRQEEELRGQIR--EEKARTRELENlqhtVEELQA--QVHSMDGAKGWFERR---LK 495
Cdd:PTZ00121 1506 AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKkaEEKKKADELKK----AEELKKaeEKKKAEEAKKAEEDKnmaLR 1581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 496 EAEESLQQQQQEQEETLKLCREEHA--AELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTvDGQRILEKKGS 573
Cdd:PTZ00121 1582 KAEEAKKAEEARIEEVMKLYEEEKKmkAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA-EELKKAEEENK 1660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 574 AVLKDLKRQLHLERKRADKLQERLQEiltnskSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSYREILKEKESSAIPARS 653
Cdd:PTZ00121 1661 IKAAEEAKKAEEDKKKAEEAKKAEED------EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317886153 654 LSSSPQAQPPRPAELS-DEEVAELFQRLAETQQEKWMLEEKVKHLEVSSASMAEDLCRKSAIIET 717
Cdd:PTZ00121 1735 AKKEAEEDKKKAEEAKkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
41-617 |
6.23e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 6.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 41 LRQKVAYLDKEFSKAQK--ALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNST---LMAEFSKLCSQLEQLELENR 115
Cdd:COG1196 198 LERQLEPLERQAEKAERyrELKEELKELEAELLLLKLRELEAELEELEAELEELEAEleeLEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 116 QLKEgvpgaAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVRpsavgegqgdppgdvlptplapmplaEVELKWEME 195
Cdd:COG1196 278 ELEL-----ELEEAQAEEYELLAELARLEQDIARLEERRRELEER--------------------------LEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 196 REEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQ 275
Cdd:COG1196 327 ELEEEL--EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-EEELEELAEELLEALRAAAELAAQLE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 276 KLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELmgQKDDLNSQ 355
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA--LLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 356 LQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVmLDELAMETLQEksqhKEELGAVRLRHEKELLGVRARYE 435
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL-AGAVAVLIGVE----AAYEAALEAALAAALQNIVVEDD 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 436 RELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEEtlKLC 515
Cdd:COG1196 557 EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR--LEA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 516 REEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQE 595
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580
....*....|....*....|..
gi 1317886153 596 RLQEILTNSKSRTGLEELVLSE 617
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREE 736
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
185-698 |
1.23e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 1.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 185 LAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQ--R 262
Cdd:COG1196 251 LEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEleE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 263 KEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQtSELASELQHRQAEY 342
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA-AELAAQLEELEEAE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 343 EELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAV--- 419
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELaea 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 420 --RLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEA 497
Cdd:COG1196 490 aaRLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 498 EE---------SLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRIL 568
Cdd:COG1196 570 KAgratflpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 569 EKKGSAVLKDLKRQLHLERKRADKLQERLQEI--LTNSKSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSYREILKEKES 646
Cdd:COG1196 650 TLEGEGGSAGGSLTGGSRRELLAALLEAEAELeeLAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 1317886153 647 SAIPARSLSSSPQAQPPRPAELSDEEVAELFQRlAETQQEKWMLEEKVKHLE 698
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDL-EELERELERLEREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
190-488 |
3.91e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 3.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 190 LKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNdsrnkIEELQQRKEADLKA 269
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA-----LANEISRLEQQKQI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 270 QLARTQKLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTAKTqELNMLREQTSELASELQH---RQAEYEELM 346
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELESKLD----ELAEELAELEEKLEELKE-ELESLEAELEELEAELEElesRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 347 GQKDDLNSQLQESLRAN----SRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvmLDELAMEtLQEKSQHKEELGAVRLR 422
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLnneiERLEARLERLEDRRERLQQEIEELLKKLEEAE--LKELQAE-LEELEEELEELQEELER 458
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1317886153 423 HEKELLGVRARYErELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKG 488
Cdd:TIGR02168 459 LEEALEELREELE-EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILG 523
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
188-495 |
8.63e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 8.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 188 VELKWEMEREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQesfcRLQTEKETLFNDSRNKIEELQQRKEAdL 267
Cdd:TIGR02168 673 LERRREIEELEEKI--EELEEKIAELEKALAELRKELEELEEELEQLR----KELEELSRQISALRKDLARLEAEVEQ-L 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 268 KAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELaselqhrQAEYEELMG 347
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDEL-------RAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 348 QKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMET---LQEKSQHKEELGAVRLRHE 424
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELealLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 425 KELLGVRA---------RYERELRELHEDKKRQEEELRGQIREEKARTRELENLqhTVEELQAQVHSMDGAKGWFERRLK 495
Cdd:TIGR02168 898 ELSEELREleskrselrRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL--TLEEAEALENKIEDDEEEARRRLK 975
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
7-600 |
2.11e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 2.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKkaQEVEVLLSENEMLQAKLHSQE 86
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL--AELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 87 EdfrlqnstlmaefsklcsQLEQLELENRQLKEgvpgaAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVRpsavge 166
Cdd:COG1196 316 E------------------RLEELEEELAELEE-----ELEELEEELEELEEELEEAEEELEEAEAELAEAEEA------ 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 167 gqgdppgdvlptplapmpLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQesfcRLQTEKE 246
Cdd:COG1196 367 ------------------LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE----RLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 247 TLfNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLRE 326
Cdd:COG1196 425 EL-EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 327 QTSELASELQHRQAEYEELMGQKDDLNSQLQESLRA-NSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMET 405
Cdd:COG1196 504 EGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAlEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 406 LQEKSQHKEELGAVRLRhekellgvRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDG 485
Cdd:COG1196 584 ARAALAAALARGAIGAA--------VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 486 --AKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVD 563
Cdd:COG1196 656 gsAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE 735
|
570 580 590
....*....|....*....|....*....|....*..
gi 1317886153 564 GQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEI 600
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
191-465 |
4.26e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.02 E-value: 4.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 191 KWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQ------QRKE 264
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEaeiaslERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 265 ADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEE 344
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK-EELEDLRAELEEVDKEFAETRDELKD 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 345 LMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMEtLQEKSQHKEELGAVRLRHE 424
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE-IKKQEWKLEQLAADLSKYE 468
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1317886153 425 KELLGVRARYERELRELHEdKKRQEEELRGQIREEKARTRE 465
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSK-LQRELAEAEAQARASEERVRG 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
185-408 |
4.58e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 4.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 185 LAEVELKWE---MEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQ 261
Cdd:TIGR02168 262 LQELEEKLEelrLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 262 RKE---------ADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQ------ELNMLRE 326
Cdd:TIGR02168 342 LEEkleelkeelESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARlerledRRERLQQ 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 327 QTSELASELQhrQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDelAMETL 406
Cdd:TIGR02168 422 EIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD--SLERL 497
|
..
gi 1317886153 407 QE 408
Cdd:TIGR02168 498 QE 499
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
251-596 |
1.18e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.47 E-value: 1.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 251 DSRNKIEELQQR-KEADLKAQLARTQ--KLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAkTQELNMLREQ 327
Cdd:TIGR02169 174 KALEELEEVEENiERLDLIIDEKRQQleRLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAI-ERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 328 TSELASELQHRQAEYEELMGQKDDLNSQLQ-----ESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvMLDELA 402
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEQLLEELNKKIKdlgeeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-KLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 403 METLQEKSQHKEELGAVRLRHEK---ELLGVRARYERELRELHEdkkrQEEELRGQIREEKARTRELENLQHTVEELQAQ 479
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEE----VDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 480 vhsmdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHA---AELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQ 556
Cdd:TIGR02169 408 -----------LDRLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1317886153 557 EvkdtvdgQRILEKKgsavLKDLKRQLHLERKRADKLQER 596
Cdd:TIGR02169 477 E-------YDRVEKE----LSKLQRELAEAEAQARASEER 505
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
28-580 |
5.40e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 5.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 28 SDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQL 107
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 108 EQLELENRQLKEGVPGAAGAHVDGELLRLQAENT--ALQKNMAALQERYGKEAVRPsavgegqgdppgdvlptplapmpl 185
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKK------------------------ 1452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 186 AEVELKWEmerEEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKEtlfndsrnKIEELQQRKEA 265
Cdd:PTZ00121 1453 AEEAKKAE---EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK--------KADEAKKAEEA 1521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 266 DlKAQLARTQKLQQELEAANQSlaelRDQRQGERLEHAAALRALQDQI---QTAKTQELNMLREQTSELASELQHRQAE- 341
Cdd:PTZ00121 1522 K-KADEAKKAEEAKKADEAKKA----EEKKKADELKKAEELKKAEEKKkaeEAKKAEEDKNMALRKAEEAKKAEEARIEe 1596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 342 ----YEELMGQKDDlNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELg 417
Cdd:PTZ00121 1597 vmklYEEEKKMKAE-EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK- 1674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 418 avrlRHEKELlgvrARYERELRELHEDKKRQEEELRG--QIREEKA-RTRELENLQHTVEELQAQVHSMDgaKGWFERRL 494
Cdd:PTZ00121 1675 ----KKAEEA----KKAEEDEKKAAEALKKEAEEAKKaeELKKKEAeEKKKAEELKKAEEENKIKAEEAK--KEAEEDKK 1744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 495 KEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELqnVREQLQQAQEERDGHV-KTISNLKQEVKDTVDGQrileKKGS 573
Cdd:PTZ00121 1745 KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV--IEEELDEEDEKRRMEVdKKIKDIFDNFANIIEGG----KEGN 1818
|
....*..
gi 1317886153 574 AVLKDLK 580
Cdd:PTZ00121 1819 LVINDSK 1825
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
37-466 |
5.54e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 5.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 37 ELSSLRQKVAYLdkefskAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQ 116
Cdd:TIGR02168 678 EIEELEEKIEEL------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 117 LkegvpgaagahvDGELLRLQAENTALQKNMAALQERygkeavrpsavgegqgdppgdvlptplapmpLAEVELKWEMER 196
Cdd:TIGR02168 752 L------------SKELTELEAEIEELEERLEEAEEE-------------------------------LAEAEAEIEELE 788
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 197 EEKKLLWEQLQGLES---SKQAETSRLQEELAKLSEKLKKKQesfcRLQTEKETLFNDSRNKIEELQQRkEADLKAQLAR 273
Cdd:TIGR02168 789 AQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLE----RRIAATERRLEDLEEQIEELSED-IESLAAEIEE 863
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 274 TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEELMGQKDDLN 353
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE-SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 354 SQLQESLRANsrlleqLQEIGQEKEQLTQDLQEARKSAEKrkvmldelametLQEKsqhKEELGAVRLRHEKELLGVRAR 433
Cdd:TIGR02168 943 ERLSEEYSLT------LEEAEALENKIEDDEEEARRRLKR------------LENK---IKELGPVNLAAIEEYEELKER 1001
|
410 420 430
....*....|....*....|....*....|...
gi 1317886153 434 YErELRELHEDKKRQEEELRGQIREEKARTREL 466
Cdd:TIGR02168 1002 YD-FLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
253-600 |
8.40e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 8.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 253 RNKIEELqqrkEADLKAQLARTQKLQQELEAANQSLAELRDQrqgerlehaaaLRALQDQIQTaKTQELNMLREQTSELA 332
Cdd:TIGR02168 676 RREIEEL----EEKIEELEEKIAELEKALAELRKELEELEEE-----------LEQLRKELEE-LSRQISALRKDLARLE 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 333 SELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMetlqEKSQH 412
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA----ELTLL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 413 KEELGAVRLRhEKELLGVRARYERELRELHEDKKRQEEELrgqireeKARTRELENLQHTVEELQAQVHSMDGAKGWFER 492
Cdd:TIGR02168 816 NEEAANLRER-LESLERRIAATERRLEDLEEQIEELSEDI-------ESLAAEIEELEELIEELESELEALLNERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 493 RLKEAEESLQQQQQEqeetlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVkdTVDGQRILEKKG 572
Cdd:TIGR02168 888 ALALLRSELEELSEE--------LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL--SEEYSLTLEEAE 957
|
330 340
....*....|....*....|....*...
gi 1317886153 573 SAVLKDLKRQLHLERkRADKLQERLQEI 600
Cdd:TIGR02168 958 ALENKIEDDEEEARR-RLKRLENKIKEL 984
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
264-484 |
3.39e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 3.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 264 EADLKAQLARTQKLQQELEAANQSLAELRDQR--------QGERLEHAAALRALQDQIQTA-----KTQELNMLREQTSE 330
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIellepireLAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 331 LASELQHRQAEYEELMGQKDDLNSQLQEslransrLLEQLQEI-GQEKEQLTQDLQEARKSAEKRKVMLDELAmetlqek 409
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDE-------LEAQIRGNgGDRLEQLEREIERLERELEERERRRARLE------- 365
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317886153 410 sQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMD 484
Cdd:COG4913 366 -ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP 439
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
219-475 |
4.72e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.31 E-value: 4.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 219 RLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEAD-----LKAQLARTQKLQQELEAANQSLAELRD 293
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDAL-QERREALQRLAEYSWDEidvasAEREIAELEAELERLDASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 294 QrqgerlehaaaLRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRAnsRLLEQLQEI 373
Cdd:COG4913 693 Q-----------LEELEAELEELE-EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LLEERFAAA 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 374 GQEK--EQLTQDLQEARKSAEKRkvmLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRArYERELRELHEDK-KRQEE 450
Cdd:COG4913 759 LGDAveRELRENLEERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADLESLPE-YLALLDRLEEDGlPEYEE 834
|
250 260
....*....|....*....|....*
gi 1317886153 451 ELRGQIREEKarTRELENLQHTVEE 475
Cdd:COG4913 835 RFKELLNENS--IEFVADLLSKLRR 857
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
219-438 |
2.46e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 2.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 219 RLQEELAKLS------EKLKKKQESFCRLQTEKETlFNDSRNKIEELQQRKEA-DLKAQLARTQKLQQELEAANQSLAEL 291
Cdd:COG4913 229 ALVEHFDDLErahealEDAREQIELLEPIRELAER-YAAARERLAELEYLRAAlRLWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 292 RDQR---QGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLE 368
Cdd:COG4913 308 EAELerlEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA 387
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 369 QLQEIGQEKEQLTQDLQEARKSAEKRKvmldELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYEREL 438
Cdd:COG4913 388 EAAALLEALEEELEALEEALAEAEAAL----RDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
189-394 |
7.24e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 7.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 189 ELKWEMEREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLK 268
Cdd:COG4942 31 QLQQEIAELEKEL--AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL-EKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 269 AQLARTQKL-----------QQELEAANQSLAELRDQRQgERLEHAAALRALQDQIQtAKTQELNMLREQTSELASELQH 337
Cdd:COG4942 108 ELLRALYRLgrqpplalllsPEDFLDAVRRLQYLKYLAP-ARREQAEELRADLAELA-ALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1317886153 338 RQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 394
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
186-708 |
9.57e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 9.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 186 AEVELKWEMERE-EKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQEsFCRLQTEKETLFNDSRNKIEELQQRKE 264
Cdd:PTZ00121 1202 AEAARKAEEERKaEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEE-IRKFEEARMAHFARRQAAIKAEEARKA 1280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 265 ADLK----AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQElnmlREQTSELASELQHRQA 340
Cdd:PTZ00121 1281 DELKkaeeKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE----AKKAAEAAKAEAEAAA 1356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 341 EYEELMGQKDDLNSQLQESLRANSrllEQLQEIGQEKEQltqdLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVR 420
Cdd:PTZ00121 1357 DEAEAAEEKAEAAEKKKEEAKKKA---DAAKKKAEEKKK----ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 421 LRHEKELlgvrARYERELRELHEDKKRQEEELRGQIREEKA-RTRELENLQHTVEELQAQVHSMDGAKgwfERRLKEAEE 499
Cdd:PTZ00121 1430 KKKADEA----KKKAEEAKKADEAKKKAEEAKKAEEAKKKAeEAKKADEAKKKAEEAKKADEAKKKAE---EAKKKADEA 1502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 500 SLQQQQQEQEETLKLCREEHAAELKGKDEELQNVrEQLQQAQEERDG-HVKTISNLK--QEVKDTVDGQRILEKKGSAVL 576
Cdd:PTZ00121 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA-DEAKKAEEKKKAdELKKAEELKkaEEKKKAEEAKKAEEDKNMALR 1581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 577 K-------DLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSYREILKEKESSAI 649
Cdd:PTZ00121 1582 KaeeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1317886153 650 PARSLSSSPQ-----AQPPRPAELSDEEVAELFQRLAETQQEKwmleEKVKHLEVSSASMAEDL 708
Cdd:PTZ00121 1662 KAAEEAKKAEedkkkAEEAKKAEEDEKKAAEALKKEAEEAKKA----EELKKKEAEEKKKAEEL 1721
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-383 |
1.03e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 4 ALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSK-SKKAQEVEVLLSENEMLQAKL 82
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQlEERIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 83 HSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEgvpgaagahvdgELLRLQAENTALQKNMAALQERYGKEAVRps 162
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE------------ALDELRAELTLLNEEAANLRERLESLERR-- 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 163 avgegqgdppgdvlptplapmpLAEVELKWEMEREEKKLLWEQLQGLESS---KQAETSRLQEELAKLSEKLKKKQESFC 239
Cdd:TIGR02168 833 ----------------------IAATERRLEDLEEQIEELSEDIESLAAEieeLEELIEELESELEALLNERASLEEALA 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 240 RLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQ---RQGERLEHAAALRALQDQIQTA 316
Cdd:TIGR02168 891 LLRSELEEL-SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlseEYSLTLEEAEALENKIEDDEEE 969
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1317886153 317 KTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQD 383
Cdd:TIGR02168 970 ARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKD 1036
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
189-602 |
1.30e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.43 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 189 ELKWEMER-EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKE 264
Cdd:PRK02224 217 ELDEEIERyEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELaeeVRDLRERLEELEEERD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 265 ----------ADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLEHAAALRALQDQIQTAKTQelnmLREQTSELASE 334
Cdd:PRK02224 297 dllaeaglddADAEAVEARREELEDRDEELRDRLEECR-VAAQAHNEEAESLREDADDLEERAEE----LREEAAELESE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 335 LQHRQAEYEELMGQKDDLNSQLqESLRA---------------NSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLD 399
Cdd:PRK02224 372 LEEAREAVEDRREEIEELEEEI-EELRErfgdapvdlgnaedfLEELREERDELREREAELEATLRTARERVEEAEALLE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 400 E-------------LAMETLQEKSQHKEELGAVRLRHEKELLGVRARYER--ELRELH------EDKKRQEEELRGQIRE 458
Cdd:PRK02224 451 AgkcpecgqpvegsPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERaeDLVEAEdrierlEERREDLEELIAERRE 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 459 EKARTRE-LENLQHTVEEL----QAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCR-EEHAAELKGKDEELQN 532
Cdd:PRK02224 531 TIEEKRErAEELRERAAELeaeaEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERiRTLLAAIADAEDEIER 610
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1317886153 533 VREQLQQAQE---ERDGHVKTISNLKQEVKDTVDGQRILEKKGsavlkdlkrqlhlERKRADKLQERLQEILT 602
Cdd:PRK02224 611 LREKREALAElndERRERLAEKRERKRELEAEFDEARIEEARE-------------DKERAEEYLEQVEEKLD 670
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
261-458 |
1.77e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 261 QRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQElnMLREQTSELA------SE 334
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAER--EIAELEAELErldassDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 335 LQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKV-MLDELAMETLQEKSQHK 413
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRaLLEERFAAALGDAVERE 766
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1317886153 414 eelgavrlrhekellgVRARYERELRELHEDKKRQEEELRGQIRE 458
Cdd:COG4913 767 ----------------LRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
269-480 |
2.39e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 2.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 269 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQiqtakTQELNMLREQTSELASELQHRQAEYEELMGQ 348
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----ERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 349 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELgavrlrheKELL 428
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL--------AELA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1317886153 429 GVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 480
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
217-479 |
3.60e-07 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 54.46 E-value: 3.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 217 TSRLQEELAKLSEKLKKKQESFCRLQTEKetlfndsrnKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQ 296
Cdd:NF012221 1537 TSESSQQADAVSKHAKQDDAAQNALADKE---------RAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETNGQAQ 1607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 297 GERLEHAAalRALQDQIqTAKTQELNMLREQTSELASELQHRQAEYEElmGQKDDLNSQLQEslrANSRLLEQLQEIgqe 376
Cdd:NF012221 1608 RDAILEES--RAVTKEL-TTLAQGLDALDSQATYAGESGDQWRNPFAG--GLLDRVQEQLDD---AKKISGKQLADA--- 1676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 377 KEQLTQDLQEARKSAEKRkvmldelamETLQEKSQHKeelgavrlRHEKELLGVRARYERELRELHEDKKRQEEELR--- 453
Cdd:NF012221 1677 KQRHVDNQQKVKDAVAKS---------EAGVAQGEQN--------QANAEQDIDDAKADAEKRKDDALAKQNEAQQAesd 1739
|
250 260
....*....|....*....|....*..
gi 1317886153 454 GQIREEKARTR-ELENLQHTVEELQAQ 479
Cdd:NF012221 1740 ANAAANDAQSRgEQDASAAENKANQAQ 1766
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
7-600 |
3.96e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 3.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQK---ALSK--SKKAQEVEVLLSENEMLQAK 81
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEeleSLEAelEELEAELEELESRLEELEEQ 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 82 LHSQEEDF---RLQNSTLMAEFSKLCSQLEQLELENRQLKEGVPGAAGAHVDGELLRLQAENTALQKNMAALQERY---- 154
Cdd:TIGR02168 381 LETLRSKVaqlELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELerle 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 155 ------------GKEAVRPSAVGEGQGDPPGDVLPTPL-APMPLAEVELKWEMEREEKK----LLWEQLQGLESSKQA-E 216
Cdd:TIGR02168 461 ealeelreeleeAEQALDAAERELAQLQARLDSLERLQeNLEGFSEGVKALLKNQSGLSgilgVLSELISVDEGYEAAiE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 217 T---SRLQEELAKLSEKLKK-----KQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLA-RTQKLQQELEAANQS 287
Cdd:TIGR02168 541 AalgGRLQAVVVENLNAAKKaiaflKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAkDLVKFDPKLRKALSY 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 288 LaeLRDQRQGERLEHAAALRALQDQIQTAKTQELNMLRE------QTSELASELQHRQAEYEELMGQKDDLNSQLQESLR 361
Cdd:TIGR02168 621 L--LGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 362 ANSRLLEQLQEIGQEKEQLTQDLQEARksaekRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELREL 441
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELS-----RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 442 HEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEET------LKLC 515
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLeeqieeLSED 853
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 516 REEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKgsavLKDLKRQLHLERKRADKLQE 595
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK----RSELRRELEELREKLAQLEL 929
|
....*
gi 1317886153 596 RLQEI 600
Cdd:TIGR02168 930 RLEGL 934
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
272-459 |
4.33e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.80 E-value: 4.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 272 ARTQKLQQELEAANQSLAELrdQRQGERLEH----AAALR-------ALQDQIQTAKtQELNMLREQTSELASELQHRQ- 339
Cdd:COG3096 893 DRLEELREELDAAQEAQAFI--QQHGKALAQleplVAVLQsdpeqfeQLQADYLQAK-EQQRRLKQQIFALSEVVQRRPh 969
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 340 ---AEYEELMGQKDDLNSQLQESLR----ANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQ----- 407
Cdd:COG3096 970 fsyEDAVGLLGENSDLNEKLRARLEqaeeARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEElgvqa 1049
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1317886153 408 ----------EKSQHKEELGAVRLRhEKELLGVRARYERELRELHEDKKRQEEELRgQIREE 459
Cdd:COG3096 1050 daeaeerariRRDELHEELSQNRSR-RSQLEKQLTRCEAEMDSLQKRLRKAERDYK-QEREQ 1109
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
229-488 |
5.08e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 5.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 229 EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQrKEADLKAQLARTQKLQQELEAANQSLAELRDQ---RQGERLEHAAA 305
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISS-ELPELREELEKLEKEVKELEELKEEIEELEKElesLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 306 LRALQDQIQTAKtQELNMLREQTSELaSELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQ 385
Cdd:PRK03918 261 IRELEERIEELK-KEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 386 EARKSAEKRKVMLDELamETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRE 465
Cdd:PRK03918 339 RLEELKKKLKELEKRL--EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416
|
250 260
....*....|....*....|...
gi 1317886153 466 LENlqhTVEELQAQVHSMDGAKG 488
Cdd:PRK03918 417 LKK---EIKELKKAIEELKKAKG 436
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
222-415 |
1.39e-06 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 51.64 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 222 EELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLE 301
Cdd:pfam03528 4 EDLQQRVAELEKENAEFYRLKQQLEAEFNQKRAKFKELYLAKEEDLKRQNAVLQEAQVELDALQNQLALARAEMENIKAV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 302 HAAALRALQDQIQTAKTQelnmLREQTSELASELQHRQAEYE-----ELMGQKDDLNSQLQESLRANSRLLEQLQEiGQE 376
Cdd:pfam03528 84 ATVSENTKQEAIDEVKSQ----WQEEVASLQAIMKETVREYEvqfhrRLEQERAQWNQYRESAEREIADLRRRLSE-GQE 158
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1317886153 377 KEQLTQDLQEARKSAEKRK--VMLDELAMETLQEKSQHKEE 415
Cdd:pfam03528 159 EENLEDEMKKAQEDAEKLRsvVMPMEKEIAALKAKLTEAED 199
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
227-426 |
1.67e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 227 LSEKLKKKQESFCRLQTEKETLFNDsrnKIEELQQRKEAdLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAAL 306
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLK---ELKELEEELKE-AEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 307 RALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEslrANSRLLEQLQEIGQEKEQLTQDLQE 386
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE---LQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1317886153 387 ARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKE 426
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
7-386 |
2.07e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 7 EEEFQRMQTQLLELRTnnyqlsdelrkngvELSSLRQKVAYLDKEFSKAQKALSKSKKaqEVEVLLSENEMLQAKLHSQE 86
Cdd:TIGR02169 673 PAELQRLRERLEGLKR--------------ELSSLQSELRRIENRLDELSQELSDASR--KIGEIEKEIEQLEQEEEKLK 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 87 EdfrlqnstlmaefsklcsQLEQLELENRQLKEGVpgaagAHVDGELLRLQAENTALQKNMAALQERygkeavrpsavge 166
Cdd:TIGR02169 737 E------------------RLEELEEDLSSLEQEI-----ENVKSELKELEARIEELEEDLHKLEEA------------- 780
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 167 gqgdppgdvlptplapmpLAEVELKWEMEReekkllWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKE 246
Cdd:TIGR02169 781 ------------------LNDLEARLSHSR------IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 247 TLFNDSR---NKIEELQQRKEaDLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQ--EL 321
Cdd:TIGR02169 837 ELQEQRIdlkEQIKSIEKEIE-NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQieKK 915
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317886153 322 NMLREQTSELASELQHRQAEYEELMGQkddlnsqlQESLRANSRLLEQLQEIGQEKEQLTQDLQE 386
Cdd:TIGR02169 916 RKRLSELKAKLEALEEELSEIEDPKGE--------DEEIPEEELSLEDVQAELQRVEEEIRALEP 972
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
187-619 |
4.12e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.74 E-value: 4.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 187 EVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsrnkieELQQRKEAD 266
Cdd:TIGR00618 191 SLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQ---------EEQLKKQQL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 267 LKAQLARTQKLQQELEAANQSLAELRDQRQGERL-EHAAALRALQDQIQTAKTQelnmLREQTSELASELQHRQA--EYE 343
Cdd:TIGR00618 262 LKQLRARIEELRAQEAVLEETQERINRARKAAPLaAHIKAVTQIEQQAQRIHTE----LQSKMRSRAKLLMKRAAhvKQQ 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 344 ELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETlQEKSQHKEELGAVRLRH 423
Cdd:TIGR00618 338 SSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLC-KELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 424 --EKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESL 501
Cdd:TIGR00618 417 saFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARL 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 502 QQQQQEQEETLKLCREEHAAE--------LKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGS 573
Cdd:TIGR00618 497 LELQEEPCPLCGSCIHPNPARqdidnpgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT 576
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1317886153 574 AVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVLSEMN 619
Cdd:TIGR00618 577 QCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQ 622
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
197-594 |
5.95e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 5.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 197 EEKKLLWEQLQGLESsKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsrnkieelqqRKEADLKAQLARTQK 276
Cdd:COG4717 71 KELKELEEELKEAEE-KEEEYAELQEELEELEEELEELEAELEELREELEKL-------------EKLLQLLPLYQELEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 277 LQQELEAANQSLAELRDQRQgERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQL 356
Cdd:COG4717 137 LEAELAELPERLEELEERLE-ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 357 Q------ESLRANSRLLEQLQEIGQEKEQLTQDLQEAR------------KSAEKRKVMLDELAM-----------ETLQ 407
Cdd:COG4717 216 EeaqeelEELEEELEQLENELEAAALEERLKEARLLLLiaaallallglgGSLLSLILTIAGVLFlvlgllallflLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 408 EKSQHKEELGAVRLRHEKELLgVRARYERELRELHEDKKRQEEELRGQIR------------EEKARTRELENLQHTVEE 475
Cdd:COG4717 296 EKASLGKEAEELQALPALEEL-EEEELEELLAALGLPPDLSPEELLELLDrieelqellreaEELEEELQLEELEQEIAA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 476 L--QAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKD---EELQNVREQLQQAQEERDGHVKT 550
Cdd:COG4717 375 LlaEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEeleEELEELEEELEELEEELEELREE 454
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1317886153 551 ISNLKQEVKDTVDGQRILEKKgsAVLKDLKRQLHLERKRADKLQ 594
Cdd:COG4717 455 LAELEAELEQLEEDGELAELL--QELEELKAELRELAEEWAALK 496
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
259-480 |
6.21e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 6.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 259 LQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHR 338
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 339 QAEYEELMGQKDDLNSQLQESlRANSRLLEQLQEIGQEKEQLTQDLQEarksaekrkvmlDELAMETLQeksqhkEELGA 418
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQS-PVIQQLRAQLAELEAELAELSARYTP------------NHPDVIALR------AQIAA 302
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1317886153 419 VRLRHEKELLGVRARYERELRELhedkKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 480
Cdd:COG3206 303 LRAQLQQEAQRILASLEAELEAL----QAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
8-478 |
7.63e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 7.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 8 EEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAK-LHSQE 86
Cdd:PRK02224 279 EEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADdLEERA 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 87 EDFRLQNSTLMAEF-------SKLCSQLEQLELENRQLKEGVPGAagahvDGELLRLQAENTALQKNMAALQERYGK-EA 158
Cdd:PRK02224 359 EELREEAAELESELeeareavEDRREEIEELEEEIEELRERFGDA-----PVDLGNAEDFLEELREERDELREREAElEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 159 VRPSA---VGEGQGDPPGDVLPT---PLAPMPLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQE--ELAKLSEK 230
Cdd:PRK02224 434 TLRTArerVEEAEALLEAGKCPEcgqPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDlvEAEDRIER 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 231 LKKKQESFCRLQTEKETLFNDSRNKIEELQQRK---EADLKAQLARTQKLQQELEAANQSLAELRDQRQ--GERLEHAAA 305
Cdd:PRK02224 514 LEERREDLEELIAERRETIEEKRERAEELRERAaelEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAelKERIESLER 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 306 LRALQDQIqTAKTQELNMLREQTSELAselqhrqaeyeelmgqkdDLNSQLQEslransrlleQLQEIGQEKEQLTQDLQ 385
Cdd:PRK02224 594 IRTLLAAI-ADAEDEIERLREKREALA------------------ELNDERRE----------RLAEKRERKRELEAEFD 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 386 EARKSAEKRKVMLDELAMETLQEKSQHKEElgavrlrHEKELLGVRARYERELRELhedkkrqeEELRGQIREEKARTRE 465
Cdd:PRK02224 645 EARIEEAREDKERAEEYLEQVEEKLDELRE-------ERDDLQAEIGAVENELEEL--------EELRERREALENRVEA 709
|
490
....*....|...
gi 1317886153 466 LENLQHTVEELQA 478
Cdd:PRK02224 710 LEALYDEAEELES 722
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
372-625 |
8.34e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 8.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 372 EIGQEKEQLTQDLQEARKSAEKRKVMLDELA--METLQEKSQHKEELGAVRLRHEkellgvraryERELRELHEDKKRQE 449
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRqqLERLRREREKAERYQALLKEKR----------EYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 450 EELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEE 529
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 530 LQNVREQLQQAQEERDGHVKTISNLKQEVKDtvdgQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTG 609
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250
....*....|....*.
gi 1317886153 610 LEELVLSEMNSPSRTQ 625
Cdd:TIGR02169 393 KLEKLKREINELKREL 408
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
189-467 |
8.70e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 8.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 189 ELKWEMEREEKKLlweqlqgleSSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKEtlfndsrNKIEELQqRKEADLK 268
Cdd:TIGR02169 706 ELSQELSDASRKI---------GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE-------NVKSELK-ELEARIE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 269 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQ 348
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 349 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL--AMETLQEKSQHKEELGAVRLRHEKE 426
Cdd:TIGR02169 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELerKIEELEAQIEKKRKRLSELKAKLEA 928
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1317886153 427 LLGVRARYERELRELHEDKKRQ--EEELRGQIREEKARTRELE 467
Cdd:TIGR02169 929 LEEELSEIEDPKGEDEEIPEEElsLEDVQAELQRVEEEIRALE 971
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
193-712 |
1.14e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 193 EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSE----KLKKKQESFCRLQ----TEKETLFNDSRNKIE------- 257
Cdd:PTZ00121 1114 ARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDakrvEIARKAEDARKAEearkAEDAKKAEAARKAEEvrkaeel 1193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 258 ---------ELQQRKEADLKAQLARTQKLQQELEA---ANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLR 325
Cdd:PTZ00121 1194 rkaedarkaEAARKAEEERKAEEARKAEDAKKAEAvkkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 326 EQTSELASELQH-------RQAEYEELMGQKDDLNSQLQESLRANsRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVML 398
Cdd:PTZ00121 1274 AEEARKADELKKaeekkkaDEAKKAEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 399 DELAMETlqEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRG--QIREEKARTRELENLQHTVEEL 476
Cdd:PTZ00121 1353 EAAADEA--EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKadELKKAAAAKKKADEAKKKAEEK 1430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 477 QA---------QVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREE--HAAELKGKDEELQNVREQLQQAQEERD 545
Cdd:PTZ00121 1431 KKadeakkkaeEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakKADEAKKKAEEAKKKADEAKKAAEAKK 1510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 546 ghvKTISNLKQEVKDTVDGQRILEKKGSAvlKDLKRQlhLERKRADKLQeRLQEILTNSKSRTGLEELVLSEMNSPSRTQ 625
Cdd:PTZ00121 1511 ---KADEAKKAEEAKKADEAKKAEEAKKA--DEAKKA--EEKKKADELK-KAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 626 TGDSSSVSSFSYREILK-EKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVSSASM 704
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKlYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
|
....*...
gi 1317886153 705 AEDLCRKS 712
Cdd:PTZ00121 1663 AAEEAKKA 1670
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
303-573 |
1.68e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 303 AAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQ 382
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 383 DLQEARKSAEKRKVMLDELaMETLQEKSQHKEELGAVRLRHEKELLgVRARYereLRELHEDKKRQEEELRGQIREEKAR 462
Cdd:COG4942 91 EIAELRAELEAQKEELAEL-LRALYRLGRQPPLALLLSPEDFLDAV-RRLQY---LKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 463 TRELENLQHTVEELQAQVhsmdgakgwferrlkeaeeslqQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQE 542
Cdd:COG4942 166 RAELEAERAELEALLAEL----------------------EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
250 260 270
....*....|....*....|....*....|.
gi 1317886153 543 ERDGHVKTISNLKQEVKDTVDGQRILEKKGS 573
Cdd:COG4942 224 ELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
219-480 |
4.29e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 4.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 219 RLQEELAKLSEKLKKKQESFCRLQTEKEtlfnDSRNKIEELQQRKEaDLKAQLARTQK---LQQ----ELEAANQSLAEL 291
Cdd:PRK04863 352 RYQADLEELEERLEEQNEVVEEADEQQE----ENEARAEAAEEEVD-ELKSQLADYQQaldVQQtraiQYQQAVQALERA 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 292 RDQRQGERLEHAAA---LRALQDQIQTAkTQELNMLrEQTSELASEL--QHRQAeYEELMGQKDDLN-SQLQESLRANSR 365
Cdd:PRK04863 427 KQLCGLPDLTADNAedwLEEFQAKEQEA-TEELLSL-EQKLSVAQAAhsQFEQA-YQLVRKIAGEVSrSEAWDVARELLR 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 366 LLEQLQEIGQEKEQLTQDLQEARKSAEKRKV---MLDELAMEtLQEKSQHKEELGAVRLRHEKELLGVRArYERELRELH 442
Cdd:PRK04863 504 RLREQRHLAEQLQQLRMRLSELEQRLRQQQRaerLLAEFCKR-LGKNLDDEDELEQLQEELEARLESLSE-SVSEARERR 581
|
250 260 270
....*....|....*....|....*....|....*...
gi 1317886153 443 EDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 480
Cdd:PRK04863 582 MALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQS 619
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
212-388 |
4.40e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 4.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 212 SKQAETSR----LQEELAKLSEKLKKKQESFCRLQTEKETL-----FNDSRNKIEELQQRKeADLKAQLARTQKLQQELE 282
Cdd:COG3206 168 LRREEARKalefLEEQLPELRKELEEAEAALEEFRQKNGLVdlseeAKLLLQQLSELESQL-AEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 283 A-------------ANQSLAELRDQRQGERLEHAA----------ALRALQDQIQTAKTQELNMLREQTSELASELQHRQ 339
Cdd:COG3206 247 AqlgsgpdalpellQSPVIQQLRAQLAELEAELAElsarytpnhpDVIALRAQIAALRAQLQQEAQRILASLEAELEALQ 326
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1317886153 340 AEYEELMGQKDDLNSQLQESLRANSRL--LEQLQEIGQEK-EQLTQDLQEAR 388
Cdd:COG3206 327 AREASLQAQLAQLEARLAELPELEAELrrLEREVEVARELyESLLQRLEEAR 378
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
185-605 |
5.23e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 5.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 185 LAEVELKWEMEREEKKLLWEQLQGLESSKQAEtsRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKE 264
Cdd:TIGR00618 262 LKQLRARIEELRAQEAVLEETQERINRARKAA--PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 265 ADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQE--LNMLREQTSELASELQHRQAEY 342
Cdd:TIGR00618 340 IEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLqsLCKELDILQREQATIDTRTSAF 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 343 EELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLR 422
Cdd:TIGR00618 420 RDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLEL 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 423 HEKELlgvraryERELRELHEDKKRQeeelrgQIREEKARTRELENLQHTVEELQAQVHSMDGaKGWFERRLKEAEESLQ 502
Cdd:TIGR00618 500 QEEPC-------PLCGSCIHPNPARQ------DIDNPGPLTRRMQRGEQTYAQLETSEEDVYH-QLTSERKQRASLKEQM 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 503 QQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQ 582
Cdd:TIGR00618 566 QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKL 645
|
410 420
....*....|....*....|...
gi 1317886153 583 LHLERKRADKLQERLQEILTNSK 605
Cdd:TIGR00618 646 TALHALQLTLTQERVREHALSIR 668
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
241-544 |
6.05e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.66 E-value: 6.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 241 LQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSlaelrdqRQGErLEHAAALRALQDQIQTAKTQE 320
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKA-------RQAE-MDRQAAIYAEQERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 321 LNMLREQTSELASElQHRQAEYEELMGQKddlnsqlqeslransRLLEQLQ-EIGQEKEQLTQDLQEARK-----SAEKR 394
Cdd:pfam17380 350 LERIRQEERKRELE-RIRQEEIAMEISRM---------------RELERLQmERQQKNERVRQELEAARKvkileEERQR 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 395 KVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELR----GQIREEKARTRELENLQ 470
Cdd:pfam17380 414 KIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERkrkkLELEKEKRDRKRAEEQR 493
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1317886153 471 HTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGkdEELQNVREQLQQAQEER 544
Cdd:pfam17380 494 RKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEM--EERRRIQEQMRKATEER 565
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
214-389 |
7.27e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 7.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 214 QAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKeadLKAQLARTQKLQQELEAANQSLaelrD 293
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDAL----REELDELEAQI---RGNGGDRLEQLEREIERLEREL----E 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 294 QRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEElmgQKDDLNSQLQESLRANSRLLEQLQEI 373
Cdd:COG4913 356 ERERRRARLEALLAALGLPLPASA-EEFAALRAEAAALLEALEEELEALEE---ALAEAEAALRDLRRELRELEAEIASL 431
|
170
....*....|....*.
gi 1317886153 374 GQEKEQLTQDLQEARK 389
Cdd:COG4913 432 ERRKSNIPARLLALRD 447
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
189-598 |
9.33e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 9.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 189 ELKWEMEREEKKLLWEQLQGLESSKQAEtsRLQEELAKLSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKEa 265
Cdd:PRK02224 318 ELEDRDEELRDRLEECRVAAQAHNEEAE--SLREDADDLEERAEELREEAAELESELEEAreaVEDRREEIEELEEEIE- 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 266 DLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTqelnmLRE-----------QTSELASE 334
Cdd:PRK02224 395 ELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA-----LLEagkcpecgqpvEGSPHVET 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 335 LQHRQAEYEELMGQKDDLNSQlQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKE 414
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEE-VEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKR-ERAEELRERAA 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 415 ELGAVRLRHEKELLGVRARYERELRELHEDKKRqeeelRGQIREEKARTRELENLQHTVEELQAQVhsmdgakgwfeRRL 494
Cdd:PRK02224 548 ELEAEAEEKREAAAEAEEEAEEAREEVAELNSK-----LAELKERIESLERIRTLLAAIADAEDEI-----------ERL 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 495 KEAEESLQQQQQEQEETLKLCREEH---AAELKGKD-EELQNVREQLQQAQEERDGHVKTisnlKQEVKDTvdgqriLEK 570
Cdd:PRK02224 612 REKREALAELNDERRERLAEKRERKrelEAEFDEARiEEAREDKERAEEYLEQVEEKLDE----LREERDD------LQA 681
|
410 420
....*....|....*....|....*...
gi 1317886153 571 KGSAVLKDLKRQLHLeRKRADKLQERLQ 598
Cdd:PRK02224 682 EIGAVENELEELEEL-RERREALENRVE 708
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
197-600 |
1.37e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 197 EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQ---ESFCRLQTEKETLFNDSRNKIEELQQRKEAD----LKA 269
Cdd:TIGR04523 235 EKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQkelEQNNKKIKELEKQLNQLKSEISDLNNQKEQDwnkeLKS 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 270 QLARTQK----LQQELEAANQSLAELRDQRQGERLEhaaaLRALQDQIQTaKTQELNMLREQTSELASELQHRQAEYEEL 345
Cdd:TIGR04523 315 ELKNQEKkleeIQNQISQNNKIISQLNEQISQLKKE----LTNSESENSE-KQRELEEKQNEIEKLKKENQSYKQEIKNL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 346 MGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKeELGAVRLRHEK 425
Cdd:TIGR04523 390 ESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK-NLDNTRESLET 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 426 ELlgvrARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMdgakgwferrlkeaeeslqqqq 505
Cdd:TIGR04523 469 QL----KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL---------------------- 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 506 QEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQ--EERDGHVKTISNLKQEVKDTVDGQRILE---KKGSAVLKDLK 580
Cdd:TIGR04523 523 KEKIEKLESEKKEKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTQKSLKKKQEEKQeliDQKEKEKKDLI 602
|
410 420
....*....|....*....|
gi 1317886153 581 RQLHLERKRADKLQERLQEI 600
Cdd:TIGR04523 603 KEIEEKEKKISSLEKELEKA 622
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
185-574 |
1.50e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 185 LAEVELKWEMEREEKKLLWEQLQGLES--SKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQR 262
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIKELEEkeERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 263 KEADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLEHAAALRALQDQIQTAKTQ-----ELNMLREQTSELA---SE 334
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELK-KEIKELKKAIEELKKAKGKCPVCGRElteehRKELLEEYTAELKrieKE 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 335 LQHRQAEYEELMGQKDDLNSQL--QESLRANSRLLEQLQEIGQE-KEQLTQDLQEARKSAEKRKVMLDELAME--TLQEK 409
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLkkESELIKLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEikSLKKE 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 410 SQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIRE--------------EKARTRELENLQHTVEE 475
Cdd:PRK03918 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKElepfyneylelkdaEKELEREEKELKKLEEE 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 476 LQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQeerdghvKTISNLK 555
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK-------KTLEKLK 700
|
410
....*....|....*....
gi 1317886153 556 QEVKDTVDGQRILEKKGSA 574
Cdd:PRK03918 701 EELEEREKAKKELEKLEKA 719
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
26-379 |
2.14e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 26 QLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKKaqEVEVLLSENEMLQAklhsQEEDFRLQNSTLMAEFSKLCS 105
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASR--KIGEIEKEIEQLEQ----EEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 106 QLEQLELENrqlkegvpgaagAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSavgEGQGDPPGDVLPTPLAPMPL 185
Cdd:TIGR02169 752 EIENVKSEL------------KELEARIEELEEDLHKLEEALNDLEARLSHSRIPEI---QAELSKLEEEVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 186 AEVELK--------WEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIE 257
Cdd:TIGR02169 817 IEQKLNrltlekeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 258 EL--QQRKEADLKAQLARTQKLQQEL----EAANQSLAELRDQRQG--ERLEHAAALRALQDQIQtAKTQELNMLrEQTS 329
Cdd:TIGR02169 897 QLreLERKIEELEAQIEKKRKRLSELkaklEALEEELSEIEDPKGEdeEIPEEELSLEDVQAELQ-RVEEEIRAL-EPVN 974
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1317886153 330 ELASElqhrqaEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQ 379
Cdd:TIGR02169 975 MLAIQ------EYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
250-479 |
2.64e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.90 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 250 NDSRNKIEELQQRK--EADLKAqlartqkLQQELEAANQSLAELRDQRQG-----ERLEHAAA-LRALQDQIQTAKTQEL 321
Cdd:PRK11281 39 ADVQAQLDALNKQKllEAEDKL-------VQQDLEQTLALLDKIDRQKEEteqlkQQLAQAPAkLRQAQAELEALKDDND 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 322 NMLREQTSELA-SELQHRQAEYEELMG--QKD--DLNSQL----------QESLRANSrllEQLQEIGQEKEQLTQDlqE 386
Cdd:PRK11281 112 EETRETLSTLSlRQLESRLAQTLDQLQnaQNDlaEYNSQLvslqtqperaQAALYANS---QRLQQIRNLLKGGKVG--G 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 387 ARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLrheKELLGVRaryeRELRELHEDkkRQEEELrgQIREEKARTREL 466
Cdd:PRK11281 187 KALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQL---QDLLQKQ----RDYLTARIQ--RLEHQL--QLLQEAINSKRL 255
|
250
....*....|...
gi 1317886153 467 ENLQHTVEELQAQ 479
Cdd:PRK11281 256 TLSEKTVQEAQSQ 268
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
253-479 |
2.93e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 44.25 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 253 RNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQ-----------RQGERLEHAAALRALQDQIQTAKTQEL 321
Cdd:pfam05667 242 KRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSSfsgssttdtglTKGSRFTHTEKLQFTNEAPAATSSPPT 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 322 NMLREQTSElaselQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL 401
Cdd:pfam05667 322 KVETEEELQ-----QQREEELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 402 A-----METLQEK----SQHKEELGAVRLRHEKELLgvrARYeRELRELHEDKKRQEEELRGQIREEKARTRELENLQHT 472
Cdd:pfam05667 397 PdaeenIAKLQALvdasAQRLVELAGQWEKHRVPLI---EEY-RALKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQ 472
|
....*..
gi 1317886153 473 VEELQAQ 479
Cdd:pfam05667 473 KEELYKQ 479
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
189-482 |
3.85e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 3.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 189 ELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQEsfcrlqteKETLFNDSRNKIEELQQRKEADLK 268
Cdd:pfam02463 214 QLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE--------KEEEKLAQVLKENKEEEKEKKLQE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 269 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEyEELMGQ 348
Cdd:pfam02463 286 EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE-EELEKL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 349 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELL 428
Cdd:pfam02463 365 QEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQG 444
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1317886153 429 GVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHS 482
Cdd:pfam02463 445 KLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEER 498
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
189-601 |
4.68e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 189 ELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELaKLS--EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEaD 266
Cdd:TIGR04523 166 KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLEL-LLSnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEIN-E 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 267 LKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEElm 346
Cdd:TIGR04523 244 KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEK-- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 347 gQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELametLQEKSQHKEELgaVRLRHEKE 426
Cdd:TIGR04523 322 -KLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL----KKENQSYKQEI--KNLESQIN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 427 LLgvraryERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFE------RRLKEAEES 500
Cdd:TIGR04523 395 DL------ESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKEliiknlDNTRESLET 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 501 LQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLK 580
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELN 548
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1317886153 581 R----------------------QLHLERKRADKLQERLQEIL 601
Cdd:TIGR04523 549 KddfelkkenlekeideknkeieELKQTQKSLKKKQEEKQELI 591
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
211-411 |
5.51e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 5.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 211 SSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKetlfNDSRNKIEELQQRKEAdLKAQLArtqKLQQELEAANQSLAE 290
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEY----NELQAELEALQAEIDK-LQAEIA---EAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 291 -LRD-QRQGERLEHAAAL---RALQDQIQTAKTqeLNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSR 365
Cdd:COG3883 91 rARAlYRSGGSVSYLDVLlgsESFSDFLDRLSA--LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEA 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1317886153 366 LLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQ 411
Cdd:COG3883 169 AKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
135-366 |
6.55e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 6.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 135 RLQAENTALQKNMAALQERYGKEAVRPSAVGegqgDPPGDVLPTPLAPMPLAEVELKWEMEREEKKLLWEQLQGLESskQ 214
Cdd:PRK11281 77 RQKEETEQLKQQLAQAPAKLRQAQAELEALK----DDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNS--Q 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 215 AETSRLQEELAK--LSEKLKKKQESFCRLQTEKEtlfnDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELR 292
Cdd:PRK11281 151 LVSLQTQPERAQaaLYANSQRLQQIRNLLKGGKV----GGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQ 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 293 DQR-----QGERLEHAaaLRALQDQI---------QTAK---TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQ 355
Cdd:PRK11281 227 KQRdyltaRIQRLEHQ--LQLLQEAInskrltlseKTVQeaqSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTL 304
|
250
....*....|.
gi 1317886153 356 LQESLRANSRL 366
Cdd:PRK11281 305 TQQNLRVKNWL 315
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
188-390 |
7.39e-04 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 42.74 E-value: 7.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 188 VELKWEMEREEKKLLweQLQGLESSKQAETSRLQE-------ELAKLSEKLKKKQESFCRLQTEKETLFnDSRNKIEELQ 260
Cdd:pfam15742 58 IKIKAELKQAQQKLL--DSTKMCSSLTAEWKHCQQkirelelEVLKQAQSIKSQNSLQEKLAQEKSRVA-DAEEKILELQ 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 261 QRKEADLKAQLA-----RTQKLQQELEAANQSLAELRDQRQGERLEhaaalRALQDQIQTAKTQELNMLREQTSELA--- 332
Cdd:pfam15742 135 QKLEHAHKVCLTdtcilEKKQLEERIKEASENEAKLKQQYQEEQQK-----RKLLDQNVNELQQQVRSLQDKEAQLEmtn 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1317886153 333 SELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKS 390
Cdd:pfam15742 210 SQQQLRIQQQEAQLKQLENEKRKSDEHLKSNQELSEKLSSLQQEKEALQEELQQVLKQ 267
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
204-392 |
7.73e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 7.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 204 EQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQK------- 276
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKL-QAEIAEAEAEIEERREELGERARALYRsggsvsy 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 277 LQQELEAanQSLAELRDQ---------RQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASElqhrQAEYEELMG 347
Cdd:COG3883 105 LDVLLGS--ESFSDFLDRlsalskiadADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA----KAELEAQQA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1317886153 348 QKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAE 392
Cdd:COG3883 179 EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
322-612 |
7.85e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 7.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 322 NMLRE-QTSELASELQhrqAEYEELMGQKDDLnsqlqESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDE 400
Cdd:COG4913 216 YMLEEpDTFEAADALV---EHFDDLERAHEAL-----EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 401 LAMETLQEKSQhkeelgavRLRHEKELLGVRaryERELRELHEDKKRQEEELRGQIREEKarTRELENLQHTVEELQAQV 480
Cdd:COG4913 288 RRLELLEAELE--------ELRAELARLEAE---LERLEARLDALREELDELEAQIRGNG--GDRLEQLEREIERLEREL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 481 hsmdgakgwfERRLKEaeeslqqqqqeqeetlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKD 560
Cdd:COG4913 355 ----------EERERR-------------------RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1317886153 561 TVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEE 612
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDE 457
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
3-617 |
9.49e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 9.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 3 QALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFsKAQKALSKSK-------KAQEVEVLLSEN 75
Cdd:pfam15921 198 EASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQL-EALKSESQNKielllqqHQDRIEQLISEH 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 76 EM------------------LQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEGVPGAAgAHVDGELLRLQ 137
Cdd:pfam15921 277 EVeitgltekassarsqansIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKI-EELEKQLVLAN 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 138 AENTALQKNmaalQERYGKEAvrpsavgeGQGDppgDVLPTPLAPMPLAEVELkwEMEREEKKLLWEQLQGLESSKQAET 217
Cdd:pfam15921 356 SELTEARTE----RDQFSQES--------GNLD---DQLQKLLADLHKREKEL--SLEKEQNKRLWDRDTGNSITIDHLR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 218 SRLQE---ELAKLsEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAElrDQ 294
Cdd:pfam15921 419 RELDDrnmEVQRL-EALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLES--SE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 295 RQGERLehAAALRALQDQIQtAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSqLQESLRANSRLLEQLQeig 374
Cdd:pfam15921 496 RTVSDL--TASLQEKERAIE-ATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEA-LKLQMAEKDKVIEILR--- 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 375 QEKEQLTQDLQEARKSAEKRKVmldelametlqEKSQHKEELGAVRLRHeKELLGVRARYERELRELHEDKKRQEEELRG 454
Cdd:pfam15921 569 QQIENMTQLVGQHGRTAGAMQV-----------EKAQLEKEINDRRLEL-QEFKILKDKKDAKIRELEARVSDLELEKVK 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 455 QIREEKARTRELENLQHTVEELQAQVHSMDGAKGwferRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVR 534
Cdd:pfam15921 637 LVNAGSERLRAVKDIKQERDQLLNEVKTSRNELN----SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTR 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 535 EQLqQAQEERDGH-VKTISNLKQEV---KDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGL 610
Cdd:pfam15921 713 NTL-KSMEGSDGHaMKVAMGMQKQItakRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE 791
|
....*..
gi 1317886153 611 EELVLSE 617
Cdd:pfam15921 792 LEVLRSQ 798
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
251-556 |
1.05e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 251 DSRNKIEELQQRKE---ADLKAQLARTQKLQQELEAANQSLAELRD-QRQGERLEH-AAALRALqdqiqTAKTQELNMLR 325
Cdd:COG3096 296 GARRQLAEEQYRLVemaRELEELSARESDLEQDYQAASDHLNLVQTaLRQQEKIERyQEDLEEL-----TERLEEQEEVV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 326 EqtsELASELQHRQAEYEELMGQKDDLNSQLQESLRAnsrlLEQLQEIGQEKEQLTQDLQEARKSAEkrkvmLDELAMET 405
Cdd:COG3096 371 E---EAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA----LDVQQTRAIQYQQAVQALEKARALCG-----LPDLTPEN 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 406 L---QEKSQHKEELGAVRLRHEKELLGV----RARYERELREL--------HEDKKRQEEELRGQIREEKARTRELENLQ 470
Cdd:COG3096 439 AedyLAAFRAKEQQATEEVLELEQKLSVadaaRRQFEKAYELVckiageveRSQAWQTARELLRRYRSQQALAQRLQQLR 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 471 HTVEELQAQVHSMDGAkgwfeRRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKT 550
Cdd:COG3096 519 AQLAELEQRLRQQQNA-----ERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRAR 593
|
....*.
gi 1317886153 551 ISNLKQ 556
Cdd:COG3096 594 IKELAA 599
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
246-486 |
1.15e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 246 ETLFNDSRNKIEELQQrKEADLKAQLArtqKLQQELEAANQSLAELRDQRQGERlehaAALRALQDQIQTAKtQELNMLR 325
Cdd:COG3883 15 DPQIQAKQKELSELQA-ELEAAQAELD---ALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAE-AEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 326 EQTSELASELQHRQAEY---EELMGQKD--DLNSQ---LQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVM 397
Cdd:COG3883 86 EELGERARALYRSGGSVsylDVLLGSESfsDFLDRlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 398 LDELAMETLQEKSQHKEELgavrlrheKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQ 477
Cdd:COG3883 166 LEAAKAELEAQQAEQEALL--------AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAA 237
|
....*....
gi 1317886153 478 AQVHSMDGA 486
Cdd:COG3883 238 AAAAAAASA 246
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
194-483 |
1.16e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 194 MEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLAR 273
Cdd:pfam12128 237 MKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 274 TQKLQQELEAANQSLAELRDqrqgERLEHAAALRALQDQIQTaktqELNMLREQTSELASELQHRQAEYE---------- 343
Cdd:pfam12128 317 VAKDRSELEALEDQHGAFLD----ADIETAAADQEQLPSWQS----ELENLEERLKALTGKHQDVTAKYNrrrskikeqn 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 344 --ELMGQKDDLNSQLQESLRANSRLLEQLQEIGQE-KEQLTQDLQEARKSAEKRKVMLDELAM---------ETLQEKSQ 411
Cdd:pfam12128 389 nrDIAGIKDKLAKIREARDRQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLKSRLGELKLrlnqatatpELLLQLEN 468
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1317886153 412 HKEELGAVRLRHEKEllgvRARYERELRELHEDKKRQEEELRgQIREEKARTRELEN-LQHTVEELQAQVHSM 483
Cdd:pfam12128 469 FDERIERAREEQEAA----NAEVERLQSELRQARKRRDQASE-ALRQASRRLEERQSaLDELELQLFPQAGTL 536
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
221-389 |
1.24e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 42.67 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 221 QEELAKLSEKLKKKQESFCRlQTEKETLFNDSRNKIEELQQRKE---ADLKAQLARTQKLQQE--LEAANQSLAELrdQR 295
Cdd:pfam13779 508 DEEIAKLMQELREALDDYMQ-ALAEQAQQNPQDLQQPDDPNAQEmtqQDLQRMLDRIEELARSgrRAEAQQMLSQL--QQ 584
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 296 QGERLEhAAALRALQDQIQTAKTQELN----MLREQTS---ELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLL- 367
Cdd:pfam13779 585 MLENLQ-AGQPQQQQQQGQSEMQQAMDelgdLLREQQQlldETFRQLQQQGGQQQGQPGQQGQQGQGQQPGQGGQQPGAq 663
|
170 180
....*....|....*....|....*....
gi 1317886153 368 -------EQLQEIGQEKEQLTQDLQEARK 389
Cdd:pfam13779 664 mppqggaEALGDLAERQQALRRRLEELQD 692
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
251-543 |
1.38e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 251 DSRNKIEELQQRKEA---DLKAQLARTQKLQQELEAANQSLA----ELRDQRQGERLEhaAALRALqdqiqTAKTQELNM 323
Cdd:PRK04863 297 TSRRQLAAEQYRLVEmarELAELNEAESDLEQDYQAASDHLNlvqtALRQQEKIERYQ--ADLEEL-----EERLEEQNE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 324 LREQTSELASELQHRQAEYEElmgQKDDLNSQLQESLRAnsrlLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELam 403
Cdd:PRK04863 370 VVEEADEQQEENEARAEAAEE---EVDELKSQLADYQQA----LDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNA-- 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 404 ETLQEKSQHKEELGAVRLRHEKELLGV----RARYERELRELH--------EDKKRQEEELRGQIREEKARTRELENLQH 471
Cdd:PRK04863 441 EDWLEEFQAKEQEATEELLSLEQKLSVaqaaHSQFEQAYQLVRkiagevsrSEAWDVARELLRRLREQRHLAEQLQQLRM 520
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317886153 472 TVEELQAQVHSMDGAkgwfeRRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQ---LQQAQEE 543
Cdd:PRK04863 521 RLSELEQRLRQQQRA-----ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERrmaLRQQLEQ 590
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
214-700 |
1.45e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.04 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 214 QAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEaDLKAQLARTQKLQQELEAANQSLAELRD 293
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQ-ELQKRIRLLEKREAEAEEALREQAELNR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 294 QRQGERLEHAAALRALQDQIQTAKTQELNmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEslransrlleqLQEI 373
Cdd:pfam05557 80 LKKKYLEALNKKLNEKESQLADAREVISC-LKNELSELRRQIQRAELELQSTNSELEELQERLDL-----------LKAK 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 374 GQEKEQLTQDLQEARKSAEKRKVMLDELAMEtLQEKSQHKEELGAVRLRhekelLGVRARYERELRELHEDKKRqeeelr 453
Cdd:pfam05557 148 ASEAEQLRQNLEKQQSSLAEAEQRIKELEFE-IQSQEQDSEIVKNSKSE-----LARIPELEKELERLREHNKH------ 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 454 gqireekartreLENLQHTVEELQAQVHSMdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEEL--- 530
Cdd:pfam05557 216 ------------LNENIENKLLLKEEVEDL-------KRKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLnlr 276
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 531 --QNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKrQLHLERKRADKLQERLQ-EILTNSKSR 607
Cdd:pfam05557 277 spEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIE-DLNKKLKRHKALVRRLQrRVLLLTKER 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 608 TGLEELVLSEMNSPSRTQTGDSSSVSSFSYREILKE----------------------KESSAIPARSLSSSPQAQPPRP 665
Cdd:pfam05557 356 DGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQKmqahneemeaqlsvaeeelggyKQQAQTLERELQALRQQESLAD 435
|
490 500 510
....*....|....*....|....*....|....*
gi 1317886153 666 AELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVS 700
Cdd:pfam05557 436 PSYSKEEVDSLRRKLETLELERQRLREQKNELEME 470
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
204-401 |
1.54e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 204 EQLQGLESSKQAETSRLQEELAklsEKLKKKQESFCRLQTEKETLFNDSRnkiEELQQRKEADLKAQLARTQKLQQELEA 283
Cdd:pfam12128 653 LDLRRLFDEKQSEKDKKNKALA---ERKDSANERLNSLEAQLKQLDKKHQ---AWLEEQKEQKREARTEKQAYWQVVEGA 726
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 284 ANQSLAELRDQRQGERLEHAAALRALQ------------DQIQTAKTQELNMLREQTSELASELQHRQAEYEELMG---- 347
Cdd:pfam12128 727 LDAQLALLKAAIAARRSGAKAELKALEtwykrdlaslgvDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQetwl 806
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1317886153 348 -QKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL 401
Cdd:pfam12128 807 qRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSEN 861
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
214-474 |
1.61e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 214 QAETSRLQEELAKLSEKLKKKQ---ESFCRLQTEKETL------------FNDSRNKIE---------ELQQRKEAD-LK 268
Cdd:PRK04863 792 RAEREELAERYATLSFDVQKLQrlhQAFSRFIGSHLAVafeadpeaelrqLNRRRVELEraladhesqEQQQRSQLEqAK 871
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 269 AQLARTQKL------------QQELEAANQSLAELRD-----QRQGERLEH----AAALR-------ALQDQIQTAKtQE 320
Cdd:PRK04863 872 EGLSALNRLlprlnlladetlADRVEEIREQLDEAEEakrfvQQHGNALAQlepiVSVLQsdpeqfeQLKQDYQQAQ-QT 950
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 321 LNMLREQTSELASELQHRQ----AEYEELMGQKDDLNSQLQESLR----ANSRLLEQLQEIGQEKEQLTQDLQEARKSAE 392
Cdd:PRK04863 951 QRDAKQQAFALTEVVQRRAhfsyEDAAEMLAKNSDLNEKLRQRLEqaeqERTRAREQLRQAQAQLAQYNQVLASLKSSYD 1030
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 393 KRKVMLDELAMEtLQEKSQHKEELGAVRLRHEKELLGVRARYERELR-ELHEDKKRQEEELRGQIREEKARTRELENLQH 471
Cdd:PRK04863 1031 AKRQMLQELKQE-LQDLGVPADSGAEERARARRDELHARLSANRSRRnQLEKQLTFCEAEMDNLTKKLRKLERDYHEMRE 1109
|
...
gi 1317886153 472 TVE 474
Cdd:PRK04863 1110 QVV 1112
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
193-392 |
1.69e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 193 EMEREEKKLLWEQlqglESSKQAETSRLQEELAKLSEKLK----KKQESFCRLQTEKEtlfnDSRNKIEELQQRKEADLK 268
Cdd:pfam17380 417 QQKVEMEQIRAEQ----EEARQREVRRLEEERAREMERVRleeqERQQQVERLRQQEE----ERKRKKLELEKEKRDRKR 488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 269 AQLARTQKLQQELEAANQSLAELRDQRqgerlehaaalralqdqiqtaKTQELNMLREQTSeLASELQHRQAEYEELMGQ 348
Cdd:pfam17380 489 AEEQRRKILEKELEERKQAMIEEERKR---------------------KLLEKEMEERQKA-IYEEERRREAEEERRKQQ 546
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1317886153 349 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAE 392
Cdd:pfam17380 547 EMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
8-482 |
1.90e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 8 EEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEE 87
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 88 DFRlQNSTLMAEFSKLCSQLEQLELENRQLKEGVPgaagAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEg 167
Cdd:COG4717 154 RLE-ELRELEEELEELEAELAELQEELEELLEQLS----LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE- 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 168 qgdppgdvlptplapmPLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTeket 247
Cdd:COG4717 228 ----------------ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLA---- 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 248 lfndsrnKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQ 327
Cdd:COG4717 288 -------LLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 328 TSELASELQHRQAEYEELMGQKDDlnsqlqESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMET-L 406
Cdd:COG4717 361 EELQLEELEQEIAALLAEAGVEDE------EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEeL 434
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1317886153 407 QEKSQHKEELGAVRLRHEKELLGVRARYER-ELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHS 482
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
252-400 |
2.32e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.86 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 252 SRNKIEELQQRKEADLKAQLARTQKLQQEL------------EAANQSLAELRDQRQGERLEHAAA---LRALQDQ---- 312
Cdd:PRK11448 51 ALLGIYEPPCENQHDLLRRLGKEGFLPDEIldvfhklrkignKAVHEFHGDHREALMGLKLAFRLAvwfHRTYGKDwdfk 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 313 ------------IQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQL 380
Cdd:PRK11448 131 pgpfvppedpenLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210
|
170 180
....*....|....*....|...
gi 1317886153 381 TQDLQEARKSAEKR---KVMLDE 400
Cdd:PRK11448 211 SQERKQKRKEITDQaakRLELSE 233
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
71-358 |
3.30e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 41.32 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 71 LLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQlkEGVPGAAGAHVDGELLRLQAENTALQknmaAL 150
Cdd:PRK10246 614 LLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQ--EDEEASWLATRQQEAQSWQQRQNELT----AL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 151 QERYGKEAVRPSAVgegqgdPPGDVLPTPLAPMPLAEvelkWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEK 230
Cdd:PRK10246 688 QNRIQQLTPLLETL------PQSDDLPHSEETVALDN----WRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTA 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 231 LKKK----QESFCRLQTEKETlfndsRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAE-LRDQRQGERLEHAAA 305
Cdd:PRK10246 758 LQASvfddQQAFLAALLDEET-----LTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDgLDLTVTVEQIQQELA 832
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1317886153 306 LRALQDQIQTAKTQElnmLREQTSELASELQHRQAeyeeLMGQKDDLNSQLQE 358
Cdd:PRK10246 833 QLAQQLRENTTRQGE---IRQQLKQDADNRQQQQA----LMQQIAQATQQVED 878
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
197-385 |
4.32e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 197 EEKKLLWEQLQGLESSK---QAETSRLQEELAKLSEKLKKKQESFCRLQTEkeTLFNDSRNKIEELQQRkeadLKAQLAR 273
Cdd:COG3206 212 EEAKLLLQQLSELESQLaeaRAELAEAEARLAALRAQLGSGPDALPELLQS--PVIQQLRAQLAELEAE----LAELSAR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 274 TQKLQQELEAANQSLAELRDQRQGERLEHAAALRAlQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLN 353
Cdd:COG3206 286 YTPNHPDVIALRAQIAALRAQLQQEAQRILASLEA-ELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVAR 364
|
170 180 190
....*....|....*....|....*....|..
gi 1317886153 354 SQLQEslransrLLEQLQEIGQEKEQLTQDLQ 385
Cdd:COG3206 365 ELYES-------LLQRLEEARLAEALTVGNVR 389
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
227-293 |
4.38e-03 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 40.47 E-value: 4.38e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1317886153 227 LSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQ------QRKEADLKAQLARTQKLQQELEAANQSLAELRD 293
Cdd:PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQasvhqlDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRD 416
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
211-372 |
4.57e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 4.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 211 SSKQAETSRLQEELAKLSEKLKKKQESFCRLQtekETLfndsrnkieelqqrkeADLKAQLARTQKLQQELEAANQSLAE 290
Cdd:PRK09039 49 SGKDSALDRLNSQIAELADLLSLERQGNQDLQ---DSV----------------ANLRASLSAAEAERSRLQALLAELAG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 291 LRDQRQGERLEHAAALRALQDQIQTAKTQ------ELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLqeslraNS 364
Cdd:PRK09039 110 AGAAAEGRAGELAQELDSEKQVSARALAQvellnqQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL------NV 183
|
....*...
gi 1317886153 365 RLLEQLQE 372
Cdd:PRK09039 184 ALAQRVQE 191
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
185-441 |
5.01e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 5.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 185 LAEVELKWEMEREEKKLLWEqLQGLESSKQAETSRLQE---ELAKLSEKLKKKQESFCRLQTEKETL----FNDSRNKIE 257
Cdd:PRK03918 517 LEELEKKAEEYEKLKEKLIK-LKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKELEELgfesVEELEERLK 595
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 258 ELQ---------QRKEADLKAQLARTQKLQQELEAANQSLAELRdqrqgerlehaAALRALQDQIQTAKT----QELNML 324
Cdd:PRK03918 596 ELEpfyneylelKDAEKELEREEKELKKLEEELDKAFEELAETE-----------KRLEELRKELEELEKkyseEEYEEL 664
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 325 REQTSELASELQHRQAEYEELMGQKDDLNSQLqESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAME 404
Cdd:PRK03918 665 REEYLELSRELAGLRAELEELEKRREEIKKTL-EKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALS 743
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1317886153 405 TLQE-KSQHKEEL-----GAVRLRHEKELLGVRARYERELREL 441
Cdd:PRK03918 744 KVGEiASEIFEELtegkySGVRVKAEENKVKLFVVYQGKERPL 786
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
193-465 |
5.63e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 5.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 193 EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLA 272
Cdd:pfam02463 749 EEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEE 828
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 273 RTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDL 352
Cdd:pfam02463 829 KIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQK 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 353 NSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRA 432
Cdd:pfam02463 909 LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEE 988
|
250 260 270
....*....|....*....|....*....|...
gi 1317886153 433 RYERELRELHEDKKRQEEELRGQIREEKARTRE 465
Cdd:pfam02463 989 RYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| OmpH |
pfam03938 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
198-290 |
7.64e-03 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 461098 [Multi-domain] Cd Length: 140 Bit Score: 37.56 E-value: 7.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 198 EKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADL-KAQLARTQK 276
Cdd:pfam03938 16 EGKAAQAQLEKKFKKRQAELEAKQKELQKLYEELQKDGALLEEEREEKEQELQKKEQELQQLQQKAQQELqKKQQELLQP 95
|
90
....*....|....
gi 1317886153 277 LQQELEAANQSLAE 290
Cdd:pfam03938 96 IQDKINKAIKEVAK 109
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
219-481 |
8.15e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 219 RLQEELAKLSEKLKKKQESFCRLQTEKEtlfndsRNKIEELQQRKEAD-LKAQLArtqKLQQELEA----------ANQS 287
Cdd:COG3096 351 RYQEDLEELTERLEEQEEVVEEAAEQLA------EAEARLEAAEEEVDsLKSQLA---DYQQALDVqqtraiqyqqAVQA 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 288 LAELRDQRQGERL------EHAAALRALQDQIqtakTQELNMLREQTS-ELASELQHRQAeYEELMGQKDDLN-SQLQES 359
Cdd:COG3096 422 LEKARALCGLPDLtpenaeDYLAAFRAKEQQA----TEEVLELEQKLSvADAARRQFEKA-YELVCKIAGEVErSQAWQT 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 360 LRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRK---VMLDELAMETLQEKSqHKEELGAVRLRHEKELLGVRArYER 436
Cdd:COG3096 497 ARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQnaeRLLEEFCQRIGQQLD-AAEELEELLAELEAQLEELEE-QAA 574
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1317886153 437 ELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVH 481
Cdd:COG3096 575 EAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSG 619
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
220-442 |
9.41e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.61 E-value: 9.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 220 LQEELAKLSEKLKKKQEsfcRLQTEKEtLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELrDQRQGER 299
Cdd:PHA02562 179 LNQQIQTLDMKIDHIQQ---QIKTYNK-NIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL-VMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 300 LEHAAALR----ALQDQIQTAK---------------TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESL 360
Cdd:PHA02562 254 SAALNKLNtaaaKIKSKIEQFQkvikmyekggvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317886153 361 RANSRLLEQLQEIGQEKeqltQDLQEARKSAEKRKVMLDELAMETLqeksQHKEELGAVRlRHEKELLGVRARYERELRE 440
Cdd:PHA02562 334 EQSKKLLELKNKISTNK----QSLITLVDKAKKVKAAIEELQAEFV----DNAEELAKLQ-DELDKIVKTKSELVKEKYH 404
|
..
gi 1317886153 441 LH 442
Cdd:PHA02562 405 RG 406
|
|
| |
