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Conserved domains on  [gi|1244518149|ref|NP_001342545|]
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oxidative stress-induced growth inhibitor 2 isoform 3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdhS super family cl26175
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
109-185 5.04e-05

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


The actual alignment was detected with superfamily member COG4529:

Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 44.95  E-value: 5.04e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1244518149 109 RIAGGSHVPfclfAENVALATGTLdSPAHLEVEGEEFPFVFHSM--PEFGAAINKGklcgrvDPVLIVGSGLTAADAVL 185
Cdd:COG4529   142 TLADGETLR----ADAVVLATGHP-PPAPPPGLAAGSPRYIADPwpPGALARIPPD------ARVLIIGTGLTAIDVVL 209
 
Name Accession Description Interval E-value
YdhS COG4529
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
109-185 5.04e-05

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 44.95  E-value: 5.04e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1244518149 109 RIAGGSHVPfclfAENVALATGTLdSPAHLEVEGEEFPFVFHSM--PEFGAAINKGklcgrvDPVLIVGSGLTAADAVL 185
Cdd:COG4529   142 TLADGETLR----ADAVVLATGHP-PPAPPPGLAAGSPRYIADPwpPGALARIPPD------ARVLIIGTGLTAIDVVL 209
PRK12770 PRK12770
putative glutamate synthase subunit beta; Provisional
 125-200 4.82e-03

putative glutamate synthase subunit beta; Provisional


Pssm-ID: 237197 [Multi-domain]  Cd Length: 352  Bit Score: 38.43  E-value: 4.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244518149 125 VALATGTLDSpAHLEVEGEEFPFVFHSMpEFGAAINKGKLC----GRVDP-----VLIVGSGLTAADAVLCAYNNNI-PV 194
Cdd:PRK12770  122 VLIATGTWKS-RKLGIPGEDLPGVYSAL-EYLFRIRAAKLGylpwEKVPPvegkkVVVVGAGLTAVDAALEAVLLGAeKV 199


                  ....*.
gi 1244518149 195 IHVFRR 200
Cdd:PRK12770  200 YLAYRR 205
 
Name Accession Description Interval E-value
YdhS COG4529
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
109-185 5.04e-05

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 44.95  E-value: 5.04e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1244518149 109 RIAGGSHVPfclfAENVALATGTLdSPAHLEVEGEEFPFVFHSM--PEFGAAINKGklcgrvDPVLIVGSGLTAADAVL 185
Cdd:COG4529   142 TLADGETLR----ADAVVLATGHP-PPAPPPGLAAGSPRYIADPwpPGALARIPPD------ARVLIIGTGLTAIDVVL 209
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 125-187 2.48e-04

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 42.81  E-value: 2.48e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1244518149 125 VALATGTLDsPAHLEVEGEEFPFVFHSMpEFGAAINKGKLCGRVDP----VLIVGSGLTAADAVLCA 187
Cdd:COG0493   210 VFLATGAGK-PRDLGIPGEDLKGVHSAM-DFLTAVNLGEAPDTILAvgkrVVVIGGGNTAMDCARTA 274
PRK12770 PRK12770
putative glutamate synthase subunit beta; Provisional
 125-200 4.82e-03

putative glutamate synthase subunit beta; Provisional


Pssm-ID: 237197 [Multi-domain]  Cd Length: 352  Bit Score: 38.43  E-value: 4.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244518149 125 VALATGTLDSpAHLEVEGEEFPFVFHSMpEFGAAINKGKLC----GRVDP-----VLIVGSGLTAADAVLCAYNNNI-PV 194
Cdd:PRK12770  122 VLIATGTWKS-RKLGIPGEDLPGVYSAL-EYLFRIRAAKLGylpwEKVPPvegkkVVVVGAGLTAVDAALEAVLLGAeKV 199


                  ....*.
gi 1244518149 195 IHVFRR 200
Cdd:PRK12770  200 YLAYRR 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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