NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|808688302|ref|NP_001294993|]
View 

INO80 complex subunit C isoform 3 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YL1_C super family cl02154
YL1 nuclear protein C-terminal domain; This domain is found in proteins of the YL1 family. ...
 12-132 3.14e-21

YL1 nuclear protein C-terminal domain; This domain is found in proteins of the YL1 family. These proteins have been shown to be DNA-binding and may be a transcription factor. This domain is found in proteins that are not YL1 proteins.


The actual alignment was detected with superfamily member COG5195:

Pssm-ID: 470478 [Multi-domain]  Cd Length: 118  Bit Score: 82.35  E-value: 3.14e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808688302  12 SEFSTGPVEKAAKPLpFKDPNFVhsghggavagKKNRTWKNLKQILASErALPWQLNDPNYFSIDAPPSFKPAKKYSDVS 91
Cdd:COG5195    5 NNNDGGDMKLLKRPW-FKKSTYK----------GKNRRFKTLRQLIPRL-TIENESSKHRYLSIEAPPSVKPRMKYCDVT 72

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 808688302  92 GLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKA 132
Cdd:COG5195   73 GLPAPYTCPNTGLRYHNSEIYKLICELPSGRDQEYLKLREF 113
 
Name Accession Description Interval E-value
COG5195 COG5195
Uncharacterized conserved protein [Function unknown];
12-132 3.14e-21

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 227522 [Multi-domain]  Cd Length: 118  Bit Score: 82.35  E-value: 3.14e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808688302  12 SEFSTGPVEKAAKPLpFKDPNFVhsghggavagKKNRTWKNLKQILASErALPWQLNDPNYFSIDAPPSFKPAKKYSDVS 91
Cdd:COG5195    5 NNNDGGDMKLLKRPW-FKKSTYK----------GKNRRFKTLRQLIPRL-TIENESSKHRYLSIEAPPSVKPRMKYCDVT 72

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 808688302  92 GLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKA 132
Cdd:COG5195   73 GLPAPYTCPNTGLRYHNSEIYKLICELPSGRDQEYLKLREF 113
YL1_C smart00993
YL1 nuclear protein C-terminal domain; This domain is found in proteins of the YL1 family. ...
 86-115 1.41e-09

YL1 nuclear protein C-terminal domain; This domain is found in proteins of the YL1 family. These proteins have been shown to be DNA-binding and may be a transcription factor. This domain is found in proteins that are not YL1 proteins.


Pssm-ID: 198061 [Multi-domain]  Cd Length: 30  Bit Score: 49.82  E-value: 1.41e-09
                           10        20        30
                   ....*....|....*....|....*....|
gi 808688302    86 KYSDVSGLLANYTDPQSKLRFSTIEEFSYI 115
Cdd:smart00993   1 KYCDITGLPARYRDPKTGLRYANAEAYKVI 30
YL1_C pfam08265
YL1 nuclear protein C-terminal domain; This domain is found in proteins of the YL1 family. ...
 87-115 2.64e-08

YL1 nuclear protein C-terminal domain; This domain is found in proteins of the YL1 family. These proteins have been shown to be DNA-binding and may be a transcription factor. This domain is found in proteins that are not YL1 proteins.


Pssm-ID: 462412  Cd Length: 29  Bit Score: 46.59  E-value: 2.64e-08
                          10        20
                  ....*....|....*....|....*....
gi 808688302   87 YSDVSGLLANYTDPQSKLRFSTIEEFSYI 115
Cdd:pfam08265   1 YCDITGLPAKYRDPKTGLPYANVEAYKVI 29
 
Name Accession Description Interval E-value
COG5195 COG5195
Uncharacterized conserved protein [Function unknown];
12-132 3.14e-21

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 227522 [Multi-domain]  Cd Length: 118  Bit Score: 82.35  E-value: 3.14e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808688302  12 SEFSTGPVEKAAKPLpFKDPNFVhsghggavagKKNRTWKNLKQILASErALPWQLNDPNYFSIDAPPSFKPAKKYSDVS 91
Cdd:COG5195    5 NNNDGGDMKLLKRPW-FKKSTYK----------GKNRRFKTLRQLIPRL-TIENESSKHRYLSIEAPPSVKPRMKYCDVT 72

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 808688302  92 GLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKA 132
Cdd:COG5195   73 GLPAPYTCPNTGLRYHNSEIYKLICELPSGRDQEYLKLREF 113
YL1_C smart00993
YL1 nuclear protein C-terminal domain; This domain is found in proteins of the YL1 family. ...
 86-115 1.41e-09

YL1 nuclear protein C-terminal domain; This domain is found in proteins of the YL1 family. These proteins have been shown to be DNA-binding and may be a transcription factor. This domain is found in proteins that are not YL1 proteins.


Pssm-ID: 198061 [Multi-domain]  Cd Length: 30  Bit Score: 49.82  E-value: 1.41e-09
                           10        20        30
                   ....*....|....*....|....*....|
gi 808688302    86 KYSDVSGLLANYTDPQSKLRFSTIEEFSYI 115
Cdd:smart00993   1 KYCDITGLPARYRDPKTGLRYANAEAYKVI 30
YL1_C pfam08265
YL1 nuclear protein C-terminal domain; This domain is found in proteins of the YL1 family. ...
 87-115 2.64e-08

YL1 nuclear protein C-terminal domain; This domain is found in proteins of the YL1 family. These proteins have been shown to be DNA-binding and may be a transcription factor. This domain is found in proteins that are not YL1 proteins.


Pssm-ID: 462412  Cd Length: 29  Bit Score: 46.59  E-value: 2.64e-08
                          10        20
                  ....*....|....*....|....*....
gi 808688302   87 YSDVSGLLANYTDPQSKLRFSTIEEFSYI 115
Cdd:pfam08265   1 YCDITGLPAKYRDPKTGLPYANVEAYKVI 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH