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Conserved domains on  [gi|597436901|ref|NP_001277928|]
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tubby-related protein 2 isoform 5 [Mus musculus]

Protein Classification

tubby family protein( domain architecture ID 10471804)

tubby family protein plays an important role in maintenance and function of neuronal cells during post differentiation and development in mammals, and may participate in the abscisic acid (ABA) signaling pathway in plants

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tub pfam01167
Tub family;
203-445 2.54e-133

Tub family;


:

Pssm-ID: 460094  Cd Length: 251  Bit Score: 384.24  E-value: 2.54e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436901  203 PAPRDHMVQCRIVRNKHGMdkGMFPSYYLYLE---AEDGVahFLLAGRKRKRSKTSNYLISLDPKDMSRNGSNFVGKVRS 279
Cdd:pfam01167   3 PGPRDGTIQCFIKRDKSGM--GLTPTYHLYLElspGDGGK--FLLAARKRRRSTTSNYLISLDADDLSRGSNGYIGKLRS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436901  280 NVLGTKFTIFDN-----GVNPERSYWVPDSARI---REELGVVCYETNVLGFRGPRKMTVILPGMDSRKQRMKVQPQNDq 351
Cdd:pfam01167  79 NFLGTKFTLYDNqppynGANPSKSRSSFGSKKVspgRYELAAVSYELNVLGTRGPRRMKVIIPSIPASGQQVPIQPQSE- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436901  352 DSILSRVQKGAGHGLLLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPDEPDHLVLQFGRVAPNIFTMDFRYPLC 431
Cdd:pfam01167 158 SSLLEDFKSGRLDELLVLKNKPPRWNEQLQCYCLNFHGRVTVASVKNFQLVAPEDQDKVILQFGKVGKDMFTMDYRYPLS 237

                         250
                  ....*....|....
gi 597436901  432 PLQAFAICLSSFDG 445
Cdd:pfam01167 238 AFQAFAICLSSFDT 251
 
Name Accession Description Interval E-value
Tub pfam01167
Tub family;
203-445 2.54e-133

Tub family;


Pssm-ID: 460094  Cd Length: 251  Bit Score: 384.24  E-value: 2.54e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436901  203 PAPRDHMVQCRIVRNKHGMdkGMFPSYYLYLE---AEDGVahFLLAGRKRKRSKTSNYLISLDPKDMSRNGSNFVGKVRS 279
Cdd:pfam01167   3 PGPRDGTIQCFIKRDKSGM--GLTPTYHLYLElspGDGGK--FLLAARKRRRSTTSNYLISLDADDLSRGSNGYIGKLRS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436901  280 NVLGTKFTIFDN-----GVNPERSYWVPDSARI---REELGVVCYETNVLGFRGPRKMTVILPGMDSRKQRMKVQPQNDq 351
Cdd:pfam01167  79 NFLGTKFTLYDNqppynGANPSKSRSSFGSKKVspgRYELAAVSYELNVLGTRGPRRMKVIIPSIPASGQQVPIQPQSE- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436901  352 DSILSRVQKGAGHGLLLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPDEPDHLVLQFGRVAPNIFTMDFRYPLC 431
Cdd:pfam01167 158 SSLLEDFKSGRLDELLVLKNKPPRWNEQLQCYCLNFHGRVTVASVKNFQLVAPEDQDKVILQFGKVGKDMFTMDYRYPLS 237

                         250
                  ....*....|....
gi 597436901  432 PLQAFAICLSSFDG 445
Cdd:pfam01167 238 AFQAFAICLSSFDT 251
 
Name Accession Description Interval E-value
Tub pfam01167
Tub family;
203-445 2.54e-133

Tub family;


Pssm-ID: 460094  Cd Length: 251  Bit Score: 384.24  E-value: 2.54e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436901  203 PAPRDHMVQCRIVRNKHGMdkGMFPSYYLYLE---AEDGVahFLLAGRKRKRSKTSNYLISLDPKDMSRNGSNFVGKVRS 279
Cdd:pfam01167   3 PGPRDGTIQCFIKRDKSGM--GLTPTYHLYLElspGDGGK--FLLAARKRRRSTTSNYLISLDADDLSRGSNGYIGKLRS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436901  280 NVLGTKFTIFDN-----GVNPERSYWVPDSARI---REELGVVCYETNVLGFRGPRKMTVILPGMDSRKQRMKVQPQNDq 351
Cdd:pfam01167  79 NFLGTKFTLYDNqppynGANPSKSRSSFGSKKVspgRYELAAVSYELNVLGTRGPRRMKVIIPSIPASGQQVPIQPQSE- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597436901  352 DSILSRVQKGAGHGLLLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPDEPDHLVLQFGRVAPNIFTMDFRYPLC 431
Cdd:pfam01167 158 SSLLEDFKSGRLDELLVLKNKPPRWNEQLQCYCLNFHGRVTVASVKNFQLVAPEDQDKVILQFGKVGKDMFTMDYRYPLS 237

                         250
                  ....*....|....
gi 597436901  432 PLQAFAICLSSFDG 445
Cdd:pfam01167 238 AFQAFAICLSSFDT 251
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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