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Conserved domains on  [gi|594542493|ref|NP_001277492|]
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tetratricopeptide repeat protein 16 isoform b [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
292-474 2.58e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.12  E-value: 2.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 292 IENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMvtdtqdnlvkqaQRQLLLTYNDFAVHCYNHGAYQEGVLLLNKA 371
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------------DPDDAEALYNLGLAYLRLGRYEEALADYEQA 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 372 IRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSP 451
Cdd:COG0457   69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG-------RYDEAIEAYERALELDP 141
                        170       180
                 ....*....|....*....|...
gi 594542493 452 QKPQYYLHRAKCRQFLQNTLGAR 474
Cdd:COG0457  142 DDADALYNLGIALEKLGRYEEAL 164
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
78-327 1.58e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.30  E-value: 1.58e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  78 YYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQG 157
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 158 qclyelcDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLC 237
Cdd:COG2956   91 -------LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 238 YQDLRSALLLDPLHAQAKGLLqkmvdqakqslqdASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDH 317
Cdd:COG2956  164 IEALEKALKLDPDCARALLLL-------------AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
                        250
                 ....*....|
gi 594542493 318 AVEDFLKAMD 327
Cdd:COG2956  231 ALELLRKALE 240
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
292-474 2.58e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.12  E-value: 2.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 292 IENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMvtdtqdnlvkqaQRQLLLTYNDFAVHCYNHGAYQEGVLLLNKA 371
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------------DPDDAEALYNLGLAYLRLGRYEEALADYEQA 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 372 IRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSP 451
Cdd:COG0457   69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG-------RYDEAIEAYERALELDP 141
                        170       180
                 ....*....|....*....|...
gi 594542493 452 QKPQYYLHRAKCRQFLQNTLGAR 474
Cdd:COG0457  142 DDADALYNLGIALEKLGRYEEAL 164
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
78-327 1.58e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.30  E-value: 1.58e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  78 YYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQG 157
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 158 qclyelcDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLC 237
Cdd:COG2956   91 -------LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 238 YQDLRSALLLDPLHAQAKGLLqkmvdqakqslqdASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDH 317
Cdd:COG2956  164 IEALEKALKLDPDCARALLLL-------------AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
                        250
                 ....*....|
gi 594542493 318 AVEDFLKAMD 327
Cdd:COG2956  231 ALELLRKALE 240
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
73-457 2.58e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 66.93  E-value: 2.58e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493   73 AKVREyynQGHQCLLQEDWEMSVLFFSRALHLDPKLVdFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFV 152
Cdd:TIGR00990 128 AKLKE---KGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  153 LYLQGQCLYELCDFQeALCVflqasdlqpqNASFSYRCMACLLA--LKRYHDCLALITREVKQGRASADVYIlrarlYNF 230
Cdd:TIGR00990 204 YDGLGKYADALLDLT-ASCI----------IDGFRNEQSAQAVErlLKKFAESKAKEILETKPENLPSVTFV-----GNY 267
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  231 FQ--KAKLCYQDLRSALLLDplHAQAKGLLQK----MVDQAKQSLQDASTLAVQgkvhralkcincAIENNPLDPNFFF- 303
Cdd:TIGR00990 268 LQsfRPKPRPAGLEDSNELD--EETGNGQLQLglksPESKADESYEEAARAFEK------------ALDLGKLGEKEAIa 333
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  304 --FRGTLRRRLQQFDHAVEDFLKAMDMVTDTQDNLVKQAQRQLLLTYNDFAvhcYNHgayqegvllLNKAIRDEQNEKGL 381
Cdd:TIGR00990 334 lnLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA---EED---------FDKALKLNSEDPDI 401
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 594542493  382 YINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYY 457
Cdd:TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG-------SIASSMATFRRCKKNFPEAPDVY 470
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
81-186 2.08e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 47.47  E-value: 2.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  81 QGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNK-YLNrlafvlylQGQC 159
Cdd:PLN03088   8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKaYLR--------KGTA 79
                         90       100
                 ....*....|....*....|....*..
gi 594542493 160 LYELCDFQEALCVFLQASDLQPQNASF 186
Cdd:PLN03088  80 CMKLEEYQTAKAALEKGASLAPGDSRF 106
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
121-207 2.62e-05

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 43.01  E-value: 2.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  121 QLCDFSSALQNLRRAYSYDPGNNKYLnrlafvlYLQGQCLYELCDFQEALCVfLQASDLQPQNASFSYRCMACLLALKRY 200
Cdd:pfam12895   1 DQHQYKNAIFLAERLLAAEPESPEDA-------YLLAQCLFLNGQYKRAYEL-LRKAKLNGSSLGCRYLFAQCLLKLKKY 72

                  ....*..
gi 594542493  201 HDCLALI 207
Cdd:pfam12895  73 DEALDAL 79
TPR_1 pfam00515
Tetratricopeptide repeat;
382-410 2.55e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.56  E-value: 2.55e-04
                          10        20
                  ....*....|....*....|....*....
gi 594542493  382 YINRGDCFFQLGNLAFAEADYKQALALSP 410
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNP 32
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
367-456 3.31e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 43.62  E-value: 3.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 367 LLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEA 446
Cdd:PLN03088  24 LYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE-------EYQTAKAALEKG 96
                         90
                 ....*....|
gi 594542493 447 IRHSPQKPQY 456
Cdd:PLN03088  97 ASLAPGDSRF 106
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
115-181 4.84e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.62  E-value: 4.84e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 594542493 115 RAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLafvlylqGQCLYELCDFQEALCVFLQASDLQP 181
Cdd:cd24142    6 KAEELLDQGNFELALKFLQRALELEPNNVEALELL-------GEILLELGDVEEAREVLLRAIELDP 65
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
382-410 2.20e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 2.20e-03
                           10        20
                   ....*....|....*....|....*....
gi 594542493   382 YINRGDCFFQLGNLAFAEADYKQALALSP 410
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
292-474 2.58e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.12  E-value: 2.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 292 IENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMvtdtqdnlvkqaQRQLLLTYNDFAVHCYNHGAYQEGVLLLNKA 371
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------------DPDDAEALYNLGLAYLRLGRYEEALADYEQA 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 372 IRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSP 451
Cdd:COG0457   69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG-------RYDEAIEAYERALELDP 141
                        170       180
                 ....*....|....*....|...
gi 594542493 452 QKPQYYLHRAKCRQFLQNTLGAR 474
Cdd:COG0457  142 DDADALYNLGIALEKLGRYEEAL 164
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
78-327 1.58e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.30  E-value: 1.58e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  78 YYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQG 157
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 158 qclyelcDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLC 237
Cdd:COG2956   91 -------LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 238 YQDLRSALLLDPLHAQAKGLLqkmvdqakqslqdASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDH 317
Cdd:COG2956  164 IEALEKALKLDPDCARALLLL-------------AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
                        250
                 ....*....|
gi 594542493 318 AVEDFLKAMD 327
Cdd:COG2956  231 ALELLRKALE 240
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
352-487 2.18e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 67.91  E-value: 2.18e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 352 AVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqq 431
Cdd:COG4783   11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG---- 86
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 594542493 432 khrQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDVATVLLLNPEY 487
Cdd:COG4783   87 ---DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
72-272 3.68e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.65  E-value: 3.68e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  72 PAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAF 151
Cdd:COG0457    5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 152 VLYLQGqclyelcDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNF- 230
Cdd:COG0457   85 ALQALG-------RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKl 157
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 594542493 231 --FQKAKLCYQDLRSALLLDPLHAQAKGLLQKMVDQAKQSLQDA 272
Cdd:COG0457  158 grYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLL 201
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
272-461 3.90e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.65  E-value: 3.90e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 272 ASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMvtdtqdnlvkqaQRQLLLTYNDF 351
Cdd:COG0457   15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------------DPDDAEALNNL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 352 AVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGFCQQ 431
Cdd:COG0457   83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
                        170       180       190
                 ....*....|....*....|....*....|
gi 594542493 432 KHRQFQTAEEHFSEAIRHSPQKPQYYLHRA 461
Cdd:COG0457  163 ALELLEKLEAAALAALLAAALGEAALALAA 192
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
347-488 4.44e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.65  E-value: 4.44e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 347 TYNDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKL 426
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 594542493 427 GfcqqkhrQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDVATVLLLNPEYP 488
Cdd:COG0457   90 G-------RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
102-352 2.63e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 67.34  E-value: 2.63e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 102 LHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcDFQEALCVFLQASDLQP 181
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-------RYEEALADYEQALELDP 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 182 QNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQAKGLLQKM 261
Cdd:COG0457   74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 262 VDQAKQSLQDASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMVTDTQDNLVKQAQ 341
Cdd:COG0457  154 LEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
                        250
                 ....*....|.
gi 594542493 342 RQLLLTYNDFA 352
Cdd:COG0457  234 RLAALALYQYR 244
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
251-493 6.49e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 66.68  E-value: 6.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 251 HAQAKGLLQKMVDQAKQSLQDASTLAV----QGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAM 326
Cdd:COG2956   24 PDKAIDLLEEALELDPETVEAHLALGNlyrrRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLL 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 327 DMVTDTQDnlvkqAQRQLLLTYNDfavhcynHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQAL 406
Cdd:COG2956  104 ELDPDDAE-----ALRLLAEIYEQ-------EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 407 ALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDVATVLLLNPE 486
Cdd:COG2956  172 KLDPDCARALLLLAELYLEQG-------DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244

                 ....*..
gi 594542493 487 YPKMAAV 493
Cdd:COG2956  245 DDLLLAL 251
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
78-259 1.35e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.03  E-value: 1.35e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  78 YYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQG 157
Cdd:COG0457   45 LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG 124
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 158 qclyelcDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLC 237
Cdd:COG0457  125 -------RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLL 197
                        170       180
                 ....*....|....*....|..
gi 594542493 238 YQDLRSALLLDPLHAQAKGLLQ 259
Cdd:COG0457  198 ALLLALEQALRKKLAILTLAAL 219
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
189-468 2.20e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.94  E-value: 2.20e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 189 RCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQAKGLLQkmvDQAKQS 268
Cdd:COG3914    5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALL---LLAALL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 269 LQDASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMVTDtqdnlvkqaqrqLLLTY 348
Cdd:COG3914   82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD------------FAEAY 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 349 NDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGF 428
Cdd:COG3914  150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACD 229
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 594542493 429 CQQKHRQFQTAEEHFSEAIRHSPQKPQYY------LHRAKCRQFLQ 468
Cdd:COG3914  230 WEVYDRFEELLAALARGPSELSPFALLYLpdddpaELLALARAWAQ 275
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
73-457 2.58e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 66.93  E-value: 2.58e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493   73 AKVREyynQGHQCLLQEDWEMSVLFFSRALHLDPKLVdFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFV 152
Cdd:TIGR00990 128 AKLKE---KGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  153 LYLQGQCLYELCDFQeALCVflqasdlqpqNASFSYRCMACLLA--LKRYHDCLALITREVKQGRASADVYIlrarlYNF 230
Cdd:TIGR00990 204 YDGLGKYADALLDLT-ASCI----------IDGFRNEQSAQAVErlLKKFAESKAKEILETKPENLPSVTFV-----GNY 267
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  231 FQ--KAKLCYQDLRSALLLDplHAQAKGLLQK----MVDQAKQSLQDASTLAVQgkvhralkcincAIENNPLDPNFFF- 303
Cdd:TIGR00990 268 LQsfRPKPRPAGLEDSNELD--EETGNGQLQLglksPESKADESYEEAARAFEK------------ALDLGKLGEKEAIa 333
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  304 --FRGTLRRRLQQFDHAVEDFLKAMDMVTDTQDNLVKQAQRQLLLTYNDFAvhcYNHgayqegvllLNKAIRDEQNEKGL 381
Cdd:TIGR00990 334 lnLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA---EED---------FDKALKLNSEDPDI 401
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 594542493  382 YINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYY 457
Cdd:TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG-------SIASSMATFRRCKKNFPEAPDVY 470
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
72-195 7.18e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.40  E-value: 7.18e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  72 PAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAF 151
Cdd:COG3914  109 PDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGN 188
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 594542493 152 VLYLQGQclyelcdFQEALCVFLQASDLQPQNASFSYRCMACLL 195
Cdd:COG3914  189 ALQDLGR-------LEEAIAAYRRALELDPDNADAHSNLLFALR 225
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
264-410 1.98e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.44  E-value: 1.98e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 264 QAKQSLQDASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMdmvtdtqdnlvkQAQRQ 343
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEAL------------ELDPD 70
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 594542493 344 LLLTYNDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSP 410
Cdd:COG4783   71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
382-489 2.02e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 2.02e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 382 YINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYYLHRA 461
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-------RYEEALADYEQALELDPDDAEALNNLG 83
                         90       100
                 ....*....|....*....|....*...
gi 594542493 462 KCRQFLQNTLGARLDVATVLLLNPEYPK 489
Cdd:COG0457   84 LALQALGRYEEALEDYDKALELDPDDAE 111
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
73-213 6.50e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.89  E-value: 6.50e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  73 AKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFV 152
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 594542493 153 LYLQGqclyelcDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQ 213
Cdd:COG4783   82 LLKAG-------DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
77-258 2.10e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.78  E-value: 2.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  77 EYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQ 156
Cdd:COG3914   46 LLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLAL 125
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 157 GQclyelcdFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLY---NFFQK 233
Cdd:COG3914  126 GR-------LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALqdlGRLEE 198
                        170       180
                 ....*....|....*....|....*
gi 594542493 234 AKLCYqdlRSALLLDPLHAQAKGLL 258
Cdd:COG3914  199 AIAAY---RRALELDPDNADAHSNL 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
178-424 3.68e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.09  E-value: 3.68e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 178 DLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQAKGL 257
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 258 LqkmvdqakqslqdASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMVTDTQDNLV 337
Cdd:COG0457   82 L-------------GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 338 KQAQRQLLLTYNDFAVHCYNHGAYQEGVLLLNKAiRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANL 417
Cdd:COG0457  149 NLGIALEKLGRYEEALELLEKLEAAALAALLAAA-LGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLAL 227

                 ....*..
gi 594542493 418 RMGVLQE 424
Cdd:COG0457  228 ALLLALR 234
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
86-245 9.84e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.05  E-value: 9.84e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  86 LLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcD 165
Cdd:COG2956  121 EQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG-------D 193
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 166 FQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALItREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSAL 245
Cdd:COG2956  194 YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELL-RKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
78-248 1.47e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 1.47e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  78 YYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQG 157
Cdd:COG0457   79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 158 qclyelcDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLC 237
Cdd:COG0457  159 -------RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231
                        170
                 ....*....|.
gi 594542493 238 YQDLRSALLLD 248
Cdd:COG0457  232 ALRLAALALYQ 242
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
76-267 1.56e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.08  E-value: 1.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  76 REYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYL 155
Cdd:COG3914   79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 156 QGQclyelcdFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITR--EVKQGRASADVYILRARL------ 227
Cdd:COG3914  159 LGR-------LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRalELDPDNADAHSNLLFALRqacdwe 231
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 594542493 228 -YNFFQKAKLCYQDLRSALLLDPLHAQAKGLLQKMVDQAKQ 267
Cdd:COG3914  232 vYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARA 272
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
72-184 1.60e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 55.69  E-value: 1.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  72 PAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNK-YLNRla 150
Cdd:COG4785   70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYaYLNR-- 147
                         90       100       110
                 ....*....|....*....|....*....|....
gi 594542493 151 fvlylqGQCLYELCDFQEALCVFLQASDLQPQNA 184
Cdd:COG4785  148 ------GIALYYLGRYELAIADLEKALELDPNDP 175
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
115-249 2.28e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.27  E-value: 2.28e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 115 RAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcDFQEALCVFLQASDLQPQNASFSYRCMACL 194
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-------DLDEAIVLLHEALELDPDEPEARLNLGLAL 82
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 594542493 195 LALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDP 249
Cdd:COG4783   83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
72-184 2.40e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 2.40e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  72 PAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAF 151
Cdd:COG4235   14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93
                         90       100       110
                 ....*....|....*....|....*....|...
gi 594542493 152 VLYLQGqclyelcDFQEALCVFLQASDLQPQNA 184
Cdd:COG4235   94 AAFQQG-------DYAEAIAAWQKLLALLPADA 119
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
100-227 2.54e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 2.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 100 RALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcDFQEALCVFLQASDL 179
Cdd:COG4235    8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-------DTEEAEELLERALAL 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 594542493 180 QPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARL 227
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
339-467 4.38e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.54  E-value: 4.38e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 339 QAQRQLLLTYNDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLR 418
Cdd:COG4785   67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 594542493 419 MGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFL 467
Cdd:COG4785  147 RGIALYYLG-------RYELAIADLEKALELDPNDPERALWLYLAERKL 188
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
98-272 7.85e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.35  E-value: 7.85e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  98 FSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcDFQEALCVFLQAS 177
Cdd:COG2956   99 LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG-------DYDEAIEALEKAL 171
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 178 DLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQAKGL 257
Cdd:COG2956  172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL 251
                        170       180
                 ....*....|....*....|
gi 594542493 258 L-----QKMVDQAKQSLQDA 272
Cdd:COG2956  252 AdllerKEGLEAALALLERQ 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
72-213 2.04e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.19  E-value: 2.04e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  72 PAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAf 151
Cdd:COG2956  141 PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA- 219
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 594542493 152 vlylqgQCLYELCDFQEALCVFLQASDLQPQNASFSYRCMAcLLALKRYHDCLALITREVKQ 213
Cdd:COG2956  220 ------ELYEKLGDPEEALELLRKALELDPSDDLLLALADL-LERKEGLEAALALLERQLRR 274
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
81-325 2.12e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 54.32  E-value: 2.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493   81 QGHQCLLQEDWEMSVLFFSRALHLDPKLVdfYVFRAEAFIQLC--DFSSALQNLRRAYSYDPGNNKYLNrlafvlyLQGQ 158
Cdd:TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDPRSL--YAKLGLAQLALAenRFDEARALIDEVLTADPGNVDALL-------LKGD 201
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  159 CLYELCDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYnfFQKAKlcY 238
Cdd:TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD--FQKKN--Y 277
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  239 QDLRS----ALLLDP-----------------LHAQAKGLLQKMVDQAKQSLQD----ASTLAVQGKVHRALKCINCAIE 293
Cdd:TIGR02917 278 EDAREtlqdALKSAPeylpalllagaseyqlgNLEQAYQYLNQILKYAPNSHQArrllASIQLRLGRVDEAIATLSPALG 357
                         250       260       270
                  ....*....|....*....|....*....|..
gi 594542493  294 NNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKA 325
Cdd:TIGR02917 358 LDPDDPAALSLLGEAYLALGDFEKAAEYLAKA 389
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
240-448 2.29e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 52.22  E-value: 2.29e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 240 DLRSALLLDPLHAQAKGLLQKMVDQAKQSLQDASTLAVQGKVHRALK-----CINCAIEN--------NPLDPNFFFFRG 306
Cdd:COG4785    1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALAlaaaaLAAAALAAeridralaLPDLAQLYYERG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 307 TLRRRLQQFDHAVEDFLKAMDMVTDtqdnlvkQAQrqlllTYNDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRG 386
Cdd:COG4785   81 VAYDSLGDYDLAIADFDQALELDPD-------LAE-----AYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRG 148
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 594542493 387 DCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGFCQ-------------QKHRQFQTAEEHFSEAIR 448
Cdd:COG4785  149 IALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKalallledwatayLLQGDTEEARELFKLALA 223
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
86-181 2.41e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.73  E-value: 2.41e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  86 LLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcD 165
Cdd:COG5010   65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG-------Q 137
                         90
                 ....*....|....*.
gi 594542493 166 FQEALCVFLQASDLQP 181
Cdd:COG5010  138 DDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
77-441 2.99e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.93  E-value: 2.99e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493   77 EYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQ 156
Cdd:TIGR02917  24 ELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQ 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  157 GQclyelcdFQEALCVFLQASDLQPQNAS--FSYRCMAcLLALKRYHDCLALITREVKQGRASADVYILRARL---YNFF 231
Cdd:TIGR02917 104 GK-------FQQVLDELPGKTLLDDEGAAelLALRGLA-YLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLalaENRF 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  232 QKAKlcyQDLRSALLLDPLHAQAKGLLqkmvdqakqslqdASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRR 311
Cdd:TIGR02917 176 DEAR---ALIDEVLTADPGNVDALLLK-------------GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIE 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  312 LQQFDHAVEDFlkamdmvtdtqDNLVKQAQRQLLLTYNDFAVHcYNHGAYQEGVLLLNKAIR-DEQNEKGLYInRGDCFF 390
Cdd:TIGR02917 240 AGEFEEAEKHA-----------DALLKKAPNSPLAHYLKALVD-FQKKNYEDARETLQDALKsAPEYLPALLL-AGASEY 306
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 594542493  391 QLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGFCQQKHRQFQTAEE 441
Cdd:TIGR02917 307 QLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALG 357
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
360-485 4.16e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 4.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 360 AYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTA 439
Cdd:COG5010   35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG-------DKDEA 107
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 594542493 440 EEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDVATVLLLNP 485
Cdd:COG5010  108 KEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
388-486 1.12e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 1.12e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 388 CFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEhFSEAIRHSPQKPQYYLHRAKCRQFL 467
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-------RYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
                         90
                 ....*....|....*....
gi 594542493 468 QNTLGARLDVATVLLLNPE 486
Cdd:COG3063   73 GDYDEALAYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
283-413 1.38e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 1.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 283 RALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMVTDTQDNLVKQAQRQllltyndfavhcYNHGAYQ 362
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL------------LAAGDTE 68
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 594542493 363 EGVLLLNKAIR-DEQNEKGLYiNRGDCFFQLGNLAFAEADYKQALALSPLDE 413
Cdd:COG4235   69 EAEELLERALAlDPDNPEALY-LLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
305-488 1.46e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.53  E-value: 1.46e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 305 RGTLRRRLQQFDHAVEDFLKAMDMVTDTQDNLVKQAQRQLLLTYNDFAvHCYNHGAYQEGVLLLNKAIRDEQNEKglyin 384
Cdd:COG3914   14 AAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLA-LAAGEAAAAAAALLLLAALLELAALL----- 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 385 rgdcFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYYLHRAKCR 464
Cdd:COG3914   88 ----LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG-------RLEEALAALRRALALNPDFAEAYLNLGEAL 156
                        170       180
                 ....*....|....*....|....
gi 594542493 465 QFLQNTLGARLDVATVLLLNPEYP 488
Cdd:COG3914  157 RRLGRLEEAIAALRRALELDPDNA 180
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
308-451 1.66e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.42  E-value: 1.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 308 LRRRLQQFDHAVEDFLKAMDMVTDTQDNLVKQAQRQLLLTYNDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGD 387
Cdd:COG5010   17 LTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLAL 96
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 594542493 388 CFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSP 451
Cdd:COG5010   97 LYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG-------QDDEAKAALQRALGTSP 153
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
99-286 3.56e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 50.37  E-value: 3.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493   99 SRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKylnrlafVLYLQGQCLYELCDFQEALCVFLQASD 178
Cdd:TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD-------IYYHRAQLHFIKGEFAQAGKDYQKSID 427
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  179 LQPQNAsFSYRCMACL-LALKRYHDCLALITREVKQGRASADVYILRARLY---NFFQKAKLCYqDLRSAL--LLDPLH- 251
Cdd:TIGR00990 428 LDPDFI-FSHIQLGVTqYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLldqNKFDEAIEKF-DTAIELekETKPMYm 505
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  252 -------------------AQAKGLLQKMV------DQAKQSLqdASTLAVQGKVHRALK 286
Cdd:TIGR00990 506 nvlplinkalalfqwkqdfIEAENLCEKALiidpecDIAVATM--AQLLLQQGDVDEALK 563
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
86-181 4.98e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.55  E-value: 4.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  86 LLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQnLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcD 165
Cdd:COG3063    3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG-------D 74
                         90
                 ....*....|....*.
gi 594542493 166 FQEALCVFLQASDLQP 181
Cdd:COG3063   75 YDEALAYLERALELDP 90
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
103-270 6.81e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.99  E-value: 6.81e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 103 HLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcDFQEALCVFLQASDLQPQ 182
Cdd:COG4785   67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLG-------DYDAALEDFDRALELDPD 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 183 NA-SFSYRCMAcLLALKRYHDCLALITREVKQGRASADVYILRarlynFFQKAKLCYQDLRSALLLDPL-HAQAKGLLQK 260
Cdd:COG4785  140 YAyAYLNRGIA-LYYLGRYELAIADLEKALELDPNDPERALWL-----YLAERKLDPEKALALLLEDWAtAYLLQGDTEE 213
                        170
                 ....*....|
gi 594542493 261 MVDQAKQSLQ 270
Cdd:COG4785  214 ARELFKLALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
356-461 7.33e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.77  E-value: 7.33e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 356 YNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQ 435
Cdd:COG4235   28 LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG-------D 100
                         90       100
                 ....*....|....*....|....*.
gi 594542493 436 FQTAEEHFSEAIRHSPQKPQYYLHRA 461
Cdd:COG4235  101 YAEAIAAWQKLLALLPADAPARLLEA 126
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
363-493 8.07e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.77  E-value: 8.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 363 EGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEH 442
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-------DTEEAEEL 73
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 594542493 443 FSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDVATVLLLNPEYPKMAAV 493
Cdd:COG4235   74 LERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
72-188 9.95e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.84  E-value: 9.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  72 PAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAF 151
Cdd:COG3914  143 PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLF 222
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 594542493 152 VLYlqGQCLYELCDFQEALCVFLQASDLQPQNASFSY 188
Cdd:COG3914  223 ALR--QACDWEVYDRFEELLAALARGPSELSPFALLY 257
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
81-186 2.08e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 47.47  E-value: 2.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  81 QGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNK-YLNrlafvlylQGQC 159
Cdd:PLN03088   8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKaYLR--------KGTA 79
                         90       100
                 ....*....|....*....|....*..
gi 594542493 160 LYELCDFQEALCVFLQASDLQPQNASF 186
Cdd:PLN03088  80 CMKLEEYQTAKAALEKGASLAPGDSRF 106
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
78-183 2.17e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.80  E-value: 2.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  78 YYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQG 157
Cdd:COG4783   41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
                         90       100
                 ....*....|....*....|....*.
gi 594542493 158 QclyelcdFQEALCVFLQASDLQPQN 183
Cdd:COG4783  121 R-------PDEAIAALEKALELDPDD 139
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
121-207 2.62e-05

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 43.01  E-value: 2.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  121 QLCDFSSALQNLRRAYSYDPGNNKYLnrlafvlYLQGQCLYELCDFQEALCVfLQASDLQPQNASFSYRCMACLLALKRY 200
Cdd:pfam12895   1 DQHQYKNAIFLAERLLAAEPESPEDA-------YLLAQCLFLNGQYKRAYEL-LRKAKLNGSSLGCRYLFAQCLLKLKKY 72

                  ....*..
gi 594542493  201 HDCLALI 207
Cdd:pfam12895  73 DEALDAL 79
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
204-328 1.67e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.92  E-value: 1.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 204 LALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQAKGLLqkmvdqakqslqdASTLAVQGKVHR 283
Cdd:COG4235    3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL-------------AEALLAAGDTEE 69
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 594542493 284 ALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDM 328
Cdd:COG4235   70 AEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
TPR_1 pfam00515
Tetratricopeptide repeat;
382-410 2.55e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.56  E-value: 2.55e-04
                          10        20
                  ....*....|....*....|....*....
gi 594542493  382 YINRGDCFFQLGNLAFAEADYKQALALSP 410
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNP 32
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
367-456 3.31e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 43.62  E-value: 3.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 367 LLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQTAEEHFSEA 446
Cdd:PLN03088  24 LYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE-------EYQTAKAALEKG 96
                         90
                 ....*....|
gi 594542493 447 IRHSPQKPQY 456
Cdd:PLN03088  97 ASLAPGDSRF 106
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
115-181 4.84e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.62  E-value: 4.84e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 594542493 115 RAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLafvlylqGQCLYELCDFQEALCVFLQASDLQP 181
Cdd:cd24142    6 KAEELLDQGNFELALKFLQRALELEPNNVEALELL-------GEILLELGDVEEAREVLLRAIELDP 65
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
77-170 5.67e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.62  E-value: 5.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  77 EYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNN--KYlnrlafvLY 154
Cdd:cd24142    2 ELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGyeKY-------LY 74
                         90
                 ....*....|....*.
gi 594542493 155 LqGQclyeLCDFQEAL 170
Cdd:cd24142   75 L-GQ----LSGGEEAL 85
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
359-451 6.42e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.38  E-value: 6.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 359 GAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEAdYKQALALSPLDEGANLRMGVLQEKLGfcqqkhrQFQT 438
Cdd:COG3063    6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG-------DYDE 77
                         90
                 ....*....|...
gi 594542493 439 AEEHFSEAIRHSP 451
Cdd:COG3063   78 ALAYLERALELDP 90
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
88-474 8.98e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 8.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493   88 QEDWEMSVLFFSRALHLDPKLVdfYVFRAEAFIQLC--DFSSALQNLRRAYSYDPGNNKYLNrlafvlyLQGQCLYELCD 165
Cdd:TIGR02917 308 LGNLEQAYQYLNQILKYAPNSH--QARRLLASIQLRlgRVDEAIATLSPALGLDPDDPAALS-------LLGEAYLALGD 378
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  166 FQEALCVFLQASDLQPQNASFSYRcmaclLALKRyhdclaLITREVKQGRAsadvyilrarlyNFFQKAKLCYQDLRSAL 245
Cdd:TIGR02917 379 FEKAAEYLAKATELDPENAAARTQ-----LGISK------LSQGDPSEAIA------------DLETAAQLDPELGRADL 435
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  246 LL----------DPLHAQAKGLLQKMVDQAKQSLQDASTLAVQGKVHRALKCINCAIEnnpLDPNFFFFRGTLRRRLQQF 315
Cdd:TIGR02917 436 LLilsylrsgqfDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS---IEPDFFPAAANLARIDIQE 512
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  316 DHAVEDFLKAMDMVTDTQDNLvkqaqrQLLLTYNDFAVHcynHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNL 395
Cdd:TIGR02917 513 GNPDDAIQRFEKVLTIDPKNL------RAILALAGLYLR---TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 594542493  396 AFAEADYKQALALSPlDEGANLRMgvlqekLGFCQQKHRQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGAR 474
Cdd:TIGR02917 584 KKALAILNEAADAAP-DSPEAWLM------LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655
TPR_11 pfam13414
TPR repeat;
386-427 1.18e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.07  E-value: 1.18e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 594542493  386 GDCFFQLGNLAFAEADYKQALALSPLDEGANLRMGVLQEKLG 427
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
86-407 1.19e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.38  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493   86 LLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcD 165
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG-------D 480
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  166 FQEALCVFLQASDLQPQN--ASFSYRCMA-----CLLALKRYHDCLALITREVKQGRASADVYILRAR---LYNFFQKA- 234
Cdd:TIGR02917 481 LAKAREAFEKALSIEPDFfpAAANLARIDiqegnPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNeeeAVAWLEKAa 560
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  235 KLCYQDLRSALLLDPLH------AQAKGLLQKMVDQAKQSLQD----ASTLAVQGKVHRALKCINCAIENNPLDPNFFFF 304
Cdd:TIGR02917 561 ELNPQEIEPALALAQYYlgkgqlKKALAILNEAADAAPDSPEAwlmlGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL 640
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  305 RGTLRRRLQQFDHAVEDFLKAMDMVTDTQDnlVKQAQRQLLLTYNDFavhcynhgayqegvlllNKAIRDEQNEKGLYIN 384
Cdd:TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTE--AQIGLAQLLLAAKRT-----------------ESAKKIAKSLQKQHPK 701
                         330       340
                  ....*....|....*....|...
gi 594542493  385 RGDCFFQLGNLAFAEADYKQALA 407
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQ 724
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
98-250 1.83e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.56  E-value: 1.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493  98 FSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGQCLYELCDFQEALCVFLQAS 177
Cdd:COG5010    2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 594542493 178 DLQPQNASFSYRCMACLLALKRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPL 250
Cdd:COG5010   82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
382-410 2.20e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 2.20e-03
                           10        20
                   ....*....|....*....|....*....
gi 594542493   382 YINRGDCFFQLGNLAFAEADYKQALALSP 410
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
304-411 3.57e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 3.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 304 FRGTLRRRLQQFDHAVEDFLKAMDMVTDTQDnlvkqaqrqlllTYNDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYI 383
Cdd:COG5010   59 PSDNLYNKLGDFEESLALLEQALQLDPNNPE------------LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126
                         90       100
                 ....*....|....*....|....*...
gi 594542493 384 NRGDCFFQLGNLAFAEADYKQALALSPL 411
Cdd:COG5010  127 NLAALLLSLGQDDEAKAALQRALGTSPL 154
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
308-410 3.61e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.46  E-value: 3.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 308 LRRRLQQFDHAVEDFLKAMdmvtdtqdnlvkQAQRQLLLTYNDFAVHCYNHGAYQEGvLLLNKAIRDEQNEKGLYINRGD 387
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKAL------------ELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAE 67
                         90       100
                 ....*....|....*....|...
gi 594542493 388 CFFQLGNLAFAEADYKQALALSP 410
Cdd:COG3063   68 LLLELGDYDEALAYLERALELDP 90
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
118-209 3.69e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.07  E-value: 3.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 118 AFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFVLYLQGqclyelcDFQEALcVFLQASDLQPQNASFSYRCMACLLAL 197
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-------RYDEAI-ALEKALKLDPNNAEALLNLAELLLEL 72
                         90
                 ....*....|..
gi 594542493 198 KRYHDCLALITR 209
Cdd:COG3063   73 GDYDEALAYLER 84
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
148-326 4.22e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 4.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 148 RLAFVLYLQGQCLYELCDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYhdclalitrevkqgrasadvyilrarl 227
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDL--------------------------- 54
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 228 ynffQKAklcYQDLRSALLLDPLHAQAKGLLqkmvdqakqslqdASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGT 307
Cdd:COG4783   55 ----DEA---IVLLHEALELDPDEPEARLNL-------------GLALLKAGDYDEALALLEKALKLDPEHPEAYLRLAR 114
                        170
                 ....*....|....*....
gi 594542493 308 LRRRLQQFDHAVEDFLKAM 326
Cdd:COG4783  115 AYRALGRPDEAIAALEKAL 133
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
394-488 5.57e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.13  E-value: 5.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 394 NLAFAEADYKQALALSPLDEGANLRM-GVLQEKLGfcqqkhrQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLG 472
Cdd:COG4785   53 LAAAALAAERIDRALALPDLAQLYYErGVAYDSLG-------DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDA 125
                         90
                 ....*....|....*.
gi 594542493 473 ARLDVATVLLLNPEYP 488
Cdd:COG4785  126 ALEDFDRALELDPDYA 141
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
128-265 8.46e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.91  E-value: 8.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 128 ALQNLRRAYSYDPGNnkylnrlAFVLYLQGQCLYELCDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALI 207
Cdd:COG4235    2 AIARLRQALAANPND-------AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELL 74
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 594542493 208 TREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQAKgLLQKMVDQA 265
Cdd:COG4235   75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR-LLEASIAEA 131
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
127-293 8.61e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.36  E-value: 8.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 127 SALQNLRRAYSYDPGNNKYLNRLAFVLYLQGQCLYELCDFQEALCVFLQASDLQPQNAS-FSYRCMAcLLALKRYHDCLA 205
Cdd:COG4785   50 AAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEaYNNRGLA-YLLLGDYDAALE 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 594542493 206 LITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQA---KGLLQKMVD--QAKQSLQD--ASTLAVQ 278
Cdd:COG4785  129 DFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERalwLYLAERKLDpeKALALLLEdwATAYLLQ 208
                        170
                 ....*....|....*
gi 594542493 279 GKVHRALKCINCAIE 293
Cdd:COG4785  209 GDTEEARELFKLALA 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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