homeobox protein NANOG isoform 3 [Mus musculus]
homeobox domain-containing protein( domain architecture ID 10441114)
homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes
List of domain hits
Name | Accession | Description | Interval | E-value | ||
Homeodomain | pfam00046 | Homeodomain; |
73-128 | 7.43e-21 | ||
Homeodomain; : Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 83.32 E-value: 7.43e-21
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PTZ00395 super family | cl33180 | Sec24-related protein; Provisional |
165-225 | 3.49e-03 | ||
Sec24-related protein; Provisional The actual alignment was detected with superfamily member PTZ00395: Pssm-ID: 185594 [Multi-domain] Cd Length: 1560 Bit Score: 38.90 E-value: 3.49e-03
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Name | Accession | Description | Interval | E-value | ||
Homeodomain | pfam00046 | Homeodomain; |
73-128 | 7.43e-21 | ||
Homeodomain; Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 83.32 E-value: 7.43e-21
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HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
71-127 | 3.50e-20 | ||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 81.53 E-value: 3.50e-20
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homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
73-130 | 2.48e-18 | ||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 76.90 E-value: 2.48e-18
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COG5576 | COG5576 | Homeodomain-containing transcription factor [Transcription]; |
55-128 | 1.59e-06 | ||
Homeodomain-containing transcription factor [Transcription]; Pssm-ID: 227863 [Multi-domain] Cd Length: 156 Bit Score: 47.05 E-value: 1.59e-06
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PTZ00395 | PTZ00395 | Sec24-related protein; Provisional |
165-225 | 3.49e-03 | ||
Sec24-related protein; Provisional Pssm-ID: 185594 [Multi-domain] Cd Length: 1560 Bit Score: 38.90 E-value: 3.49e-03
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Name | Accession | Description | Interval | E-value | ||
Homeodomain | pfam00046 | Homeodomain; |
73-128 | 7.43e-21 | ||
Homeodomain; Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 83.32 E-value: 7.43e-21
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HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
71-127 | 3.50e-20 | ||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 81.53 E-value: 3.50e-20
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homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
73-130 | 2.48e-18 | ||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 76.90 E-value: 2.48e-18
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COG5576 | COG5576 | Homeodomain-containing transcription factor [Transcription]; |
55-128 | 1.59e-06 | ||
Homeodomain-containing transcription factor [Transcription]; Pssm-ID: 227863 [Multi-domain] Cd Length: 156 Bit Score: 47.05 E-value: 1.59e-06
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PTZ00395 | PTZ00395 | Sec24-related protein; Provisional |
165-225 | 3.49e-03 | ||
Sec24-related protein; Provisional Pssm-ID: 185594 [Multi-domain] Cd Length: 1560 Bit Score: 38.90 E-value: 3.49e-03
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Blast search parameters | ||||
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