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Conserved domains on  [gi|408357996|ref|NP_001258439|]
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lymphocyte-specific protein 1 isoform 1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Caldesmon super family cl25547
Caldesmon;
182-276 8.36e-18

Caldesmon;


The actual alignment was detected with superfamily member pfam02029:

Pssm-ID: 460421 [Multi-domain]  Cd Length: 495  Bit Score: 83.76  E-value: 8.36e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408357996  182 PLSPTTKLADRTESLNRSIKKSNSVKKSQPTLPISTIDERLQQYTQATESSGRTPKLSRQPSIELPSMA--VASTKTLWE 259
Cdd:pfam02029 353 PKGSSLKITERAEFLNKSLQKSSSVKKTHPPAVVSKIDSRLEQYTSAIESSTKEAKPTKPAASDLPVPAegVRNIKSMWE 432
                          90
                  ....*....|....*..
gi 408357996  260 TGEVQSQSASKTPSCQD 276
Cdd:pfam02029 433 KGNVFSSPGAKGTPNKE 449
 
Name Accession Description Interval E-value
Caldesmon pfam02029
Caldesmon;
182-276 8.36e-18

Caldesmon;


Pssm-ID: 460421 [Multi-domain]  Cd Length: 495  Bit Score: 83.76  E-value: 8.36e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408357996  182 PLSPTTKLADRTESLNRSIKKSNSVKKSQPTLPISTIDERLQQYTQATESSGRTPKLSRQPSIELPSMA--VASTKTLWE 259
Cdd:pfam02029 353 PKGSSLKITERAEFLNKSLQKSSSVKKTHPPAVVSKIDSRLEQYTSAIESSTKEAKPTKPAASDLPVPAegVRNIKSMWE 432
                          90
                  ....*....|....*..
gi 408357996  260 TGEVQSQSASKTPSCQD 276
Cdd:pfam02029 433 KGNVFSSPGAKGTPNKE 449
 
Name Accession Description Interval E-value
Caldesmon pfam02029
Caldesmon;
182-276 8.36e-18

Caldesmon;


Pssm-ID: 460421 [Multi-domain]  Cd Length: 495  Bit Score: 83.76  E-value: 8.36e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408357996  182 PLSPTTKLADRTESLNRSIKKSNSVKKSQPTLPISTIDERLQQYTQATESSGRTPKLSRQPSIELPSMA--VASTKTLWE 259
Cdd:pfam02029 353 PKGSSLKITERAEFLNKSLQKSSSVKKTHPPAVVSKIDSRLEQYTSAIESSTKEAKPTKPAASDLPVPAegVRNIKSMWE 432
                          90
                  ....*....|....*..
gi 408357996  260 TGEVQSQSASKTPSCQD 276
Cdd:pfam02029 433 KGNVFSSPGAKGTPNKE 449
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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