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Conserved domains on  [gi|407339783|ref|NP_001258415|]
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reticulon-3 isoform 5 [Mus musculus]

Protein Classification

reticulon family protein( domain architecture ID 10493657)

reticulon family protein associates with the endoplasmic reticulum (ER) through a C-terminal di-lysine ER retention motif; such as mammalian RTN4/Nogo, a developmental neurite growth regulatory factor with a role as a negative regulator of axon-axon adhesion and growth, and as a facilitator of neurite branching

Gene Ontology:  GO:0005789|GO:0005783
PubMed:  12832288

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Reticulon pfam02453
Reticulon; Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of ...
455-619 6.74e-51

Reticulon; Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologs.


:

Pssm-ID: 460562 [Multi-domain]  Cd Length: 157  Bit Score: 173.44  E-value: 6.74e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407339783  455 VHDLIFWRDVKKTGFVFGTTLIMLLSL--AAFSVISVVSYLILALLSVTISFRVYKSVIQAVqkseeGHPFKayldvDIT 532
Cdd:pfam02453   1 VADLLLWRNPKKSGGVFGGATALWLLFevLGYSLLSLVSKLLLLLLLVLFLWAEYAGKLNRP-----PPPIP-----ELE 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407339783  533 LSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQI 612
Cdd:pfam02453  71 LSEETVRELADSLRVLINFALSELRRIALGEDLKLFLKVAVVLWILSYVGSLFSFLTLLYIGVVLAFTVPLLYEKYEDEI 150

                  ....*..
gi 407339783  613 DHYVGIA 619
Cdd:pfam02453 151 DAYVEKA 157
 
Name Accession Description Interval E-value
Reticulon pfam02453
Reticulon; Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of ...
455-619 6.74e-51

Reticulon; Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologs.


Pssm-ID: 460562 [Multi-domain]  Cd Length: 157  Bit Score: 173.44  E-value: 6.74e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407339783  455 VHDLIFWRDVKKTGFVFGTTLIMLLSL--AAFSVISVVSYLILALLSVTISFRVYKSVIQAVqkseeGHPFKayldvDIT 532
Cdd:pfam02453   1 VADLLLWRNPKKSGGVFGGATALWLLFevLGYSLLSLVSKLLLLLLLVLFLWAEYAGKLNRP-----PPPIP-----ELE 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407339783  533 LSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQI 612
Cdd:pfam02453  71 LSEETVRELADSLRVLINFALSELRRIALGEDLKLFLKVAVVLWILSYVGSLFSFLTLLYIGVVLAFTVPLLYEKYEDEI 150

                  ....*..
gi 407339783  613 DHYVGIA 619
Cdd:pfam02453 151 DAYVEKA 157
 
Name Accession Description Interval E-value
Reticulon pfam02453
Reticulon; Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of ...
455-619 6.74e-51

Reticulon; Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologs.


Pssm-ID: 460562 [Multi-domain]  Cd Length: 157  Bit Score: 173.44  E-value: 6.74e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407339783  455 VHDLIFWRDVKKTGFVFGTTLIMLLSL--AAFSVISVVSYLILALLSVTISFRVYKSVIQAVqkseeGHPFKayldvDIT 532
Cdd:pfam02453   1 VADLLLWRNPKKSGGVFGGATALWLLFevLGYSLLSLVSKLLLLLLLVLFLWAEYAGKLNRP-----PPPIP-----ELE 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407339783  533 LSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQI 612
Cdd:pfam02453  71 LSEETVRELADSLRVLINFALSELRRIALGEDLKLFLKVAVVLWILSYVGSLFSFLTLLYIGVVLAFTVPLLYEKYEDEI 150

                  ....*..
gi 407339783  613 DHYVGIA 619
Cdd:pfam02453 151 DAYVEKA 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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