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Conserved domains on  [gi|378404903|ref|NP_001243727|]
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nucleolar protein 4-like isoform 1 [Homo sapiens]

Protein Classification

integrase zinc binding domain-containing protein( domain architecture ID 16053682)

integrase zinc binding domain-containing protein

Gene Ontology:  GO:0008270

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Integrase_H2C2 pfam17921
Integrase zinc binding domain; This zinc binding domain is found in a wide variety of ...
 131-185 2.78e-04

Integrase zinc binding domain; This zinc binding domain is found in a wide variety of integrase proteins.


:

Pssm-ID: 465569 [Multi-domain]  Cd Length: 58  Bit Score: 39.15  E-value: 2.78e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 378404903  131 DIIYSMHVESSaepgkapkHAGQKKTYRAIAETYaFLP--REAVTRFLMSCTECQKR 185
Cdd:pfam17921   8 EILKEAHDSGG--------HLGIEKTLARLRRRY-WWPgmRKDVKKYVKSCETCQRR 55
 
Name Accession Description Interval E-value
Integrase_H2C2 pfam17921
Integrase zinc binding domain; This zinc binding domain is found in a wide variety of ...
 131-185 2.78e-04

Integrase zinc binding domain; This zinc binding domain is found in a wide variety of integrase proteins.


Pssm-ID: 465569 [Multi-domain]  Cd Length: 58  Bit Score: 39.15  E-value: 2.78e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 378404903  131 DIIYSMHVESSaepgkapkHAGQKKTYRAIAETYaFLP--REAVTRFLMSCTECQKR 185
Cdd:pfam17921   8 EILKEAHDSGG--------HLGIEKTLARLRRRY-WWPgmRKDVKKYVKSCETCQRR 55
 
Name Accession Description Interval E-value
Integrase_H2C2 pfam17921
Integrase zinc binding domain; This zinc binding domain is found in a wide variety of ...
 131-185 2.78e-04

Integrase zinc binding domain; This zinc binding domain is found in a wide variety of integrase proteins.


Pssm-ID: 465569 [Multi-domain]  Cd Length: 58  Bit Score: 39.15  E-value: 2.78e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 378404903  131 DIIYSMHVESSaepgkapkHAGQKKTYRAIAETYaFLP--REAVTRFLMSCTECQKR 185
Cdd:pfam17921   8 EILKEAHDSGG--------HLGIEKTLARLRRRY-WWPgmRKDVKKYVKSCETCQRR 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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