NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|356582423|ref|NP_001239189|]
View 

nucleophosmin isoform 2 [Mus musculus]

Protein Classification

Nucleoplasmin and NPM1-C domain-containing protein( domain architecture ID 11140131)

Nucleoplasmin and NPM1-C domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Nucleoplasmin pfam03066
Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation ...
 21-104 1.56e-46

Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays.


:

Pssm-ID: 460792  Cd Length: 102  Bit Score: 151.26  E-value: 1.56e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356582423   21 DNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISG 100
Cdd:pfam03066  19 EDEDCEHQLSLKTICLGAKAKDELNVVEVEAMNYKKKPIKVPIASLKVSVLPMVSLDGLEPTPPVTFRLKSGSGPVHISG 98


                  ....
gi 356582423  101 QHLV 104
Cdd:pfam03066  99 QHLV 102
NPM1-C pfam16276
Nucleophosmin C-terminal domain; This domain, approximately 50 residues in length, is mainly ...
 230-278 4.21e-26

Nucleophosmin C-terminal domain; This domain, approximately 50 residues in length, is mainly found in Nucleophosmin proteins in mammalia species. Nucleophosmin, a nucleocytoplasmic shuttling protein, is related with cancer and involved in serveral cellluar functions, such as ribosome maturatation and export, centrosome duplication, and response to stress stimuli. This domain has a three-helix bundle which can bind G-quadruplex DNA and the interaction involves helices H1 and H2 of the NPM1-C domain mainly through electrostatic contacts with G-quadruplex phosphates, indicating a crucial role in rescuring its function in leukemia.


:

Pssm-ID: 465081  Cd Length: 49  Bit Score: 97.06  E-value: 4.21e-26
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 356582423  230 EDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKS 278
Cdd:pfam16276   1 EEIKAKMQESVEKGVSLPKVEAKFENFVKNCFKMTDQKVIQDLWQWRQS 49
 
Name Accession Description Interval E-value
Nucleoplasmin pfam03066
Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation ...
 21-104 1.56e-46

Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays.


Pssm-ID: 460792  Cd Length: 102  Bit Score: 151.26  E-value: 1.56e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356582423   21 DNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISG 100
Cdd:pfam03066  19 EDEDCEHQLSLKTICLGAKAKDELNVVEVEAMNYKKKPIKVPIASLKVSVLPMVSLDGLEPTPPVTFRLKSGSGPVHISG 98


                  ....
gi 356582423  101 QHLV 104
Cdd:pfam03066  99 QHLV 102
NPM1-C pfam16276
Nucleophosmin C-terminal domain; This domain, approximately 50 residues in length, is mainly ...
 230-278 4.21e-26

Nucleophosmin C-terminal domain; This domain, approximately 50 residues in length, is mainly found in Nucleophosmin proteins in mammalia species. Nucleophosmin, a nucleocytoplasmic shuttling protein, is related with cancer and involved in serveral cellluar functions, such as ribosome maturatation and export, centrosome duplication, and response to stress stimuli. This domain has a three-helix bundle which can bind G-quadruplex DNA and the interaction involves helices H1 and H2 of the NPM1-C domain mainly through electrostatic contacts with G-quadruplex phosphates, indicating a crucial role in rescuring its function in leukemia.


Pssm-ID: 465081  Cd Length: 49  Bit Score: 97.06  E-value: 4.21e-26
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 356582423  230 EDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKS 278
Cdd:pfam16276   1 EEIKAKMQESVEKGVSLPKVEAKFENFVKNCFKMTDQKVIQDLWQWRQS 49
 
Name Accession Description Interval E-value
Nucleoplasmin pfam03066
Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation ...
 21-104 1.56e-46

Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays.


Pssm-ID: 460792  Cd Length: 102  Bit Score: 151.26  E-value: 1.56e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356582423   21 DNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISG 100
Cdd:pfam03066  19 EDEDCEHQLSLKTICLGAKAKDELNVVEVEAMNYKKKPIKVPIASLKVSVLPMVSLDGLEPTPPVTFRLKSGSGPVHISG 98


                  ....
gi 356582423  101 QHLV 104
Cdd:pfam03066  99 QHLV 102
NPM1-C pfam16276
Nucleophosmin C-terminal domain; This domain, approximately 50 residues in length, is mainly ...
 230-278 4.21e-26

Nucleophosmin C-terminal domain; This domain, approximately 50 residues in length, is mainly found in Nucleophosmin proteins in mammalia species. Nucleophosmin, a nucleocytoplasmic shuttling protein, is related with cancer and involved in serveral cellluar functions, such as ribosome maturatation and export, centrosome duplication, and response to stress stimuli. This domain has a three-helix bundle which can bind G-quadruplex DNA and the interaction involves helices H1 and H2 of the NPM1-C domain mainly through electrostatic contacts with G-quadruplex phosphates, indicating a crucial role in rescuring its function in leukemia.


Pssm-ID: 465081  Cd Length: 49  Bit Score: 97.06  E-value: 4.21e-26
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 356582423  230 EDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKS 278
Cdd:pfam16276   1 EEIKAKMQESVEKGVSLPKVEAKFENFVKNCFKMTDQKVIQDLWQWRQS 49
NPL pfam17800
Nucleoplasmin-like domain;
26-100 5.85e-03

Nucleoplasmin-like domain;


Pssm-ID: 465511  Cd Length: 90  Bit Score: 35.27  E-value: 5.85e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 356582423   26 EHQLSLRTVSLGAGAKDELHIveaeAMNYEGSPIKVTLATLKMSVQPTVSLGgFEITP--PVVLRLKcGSGPVHISG 100
Cdd:pfam17800  17 PEDLHITNAALGPSAKPETVV----KVKVDDEEEEFVLCTLTPGKVEQQPLD-LVFSEgeEVTFSVK-GKNTVHLTG 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH