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Conserved domains on  [gi|168229246|ref|NP_001094933|]
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uncharacterized protein LOC231885 [Mus musculus]

Protein Classification

REM domain-containing protein( domain architecture ID 10153433)

REM domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
REM cd06224
Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also ...
 63-176 4.41e-12

Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.


:

Pssm-ID: 100121  Cd Length: 122  Bit Score: 62.04  E-value: 4.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168229246  63 VEQMIAYIPAAVHYHDQLSISLFLAVYHRYCSTWEVLDLLMKTYPSFQP--------DCEQDQLTKSAIFNFLAHWLDTF 134
Cdd:cd06224    2 LEALIEHLTSTFDMPDPSFVSTFLLTYRSFTTPTELLEKLIERYEIAPPenleyndwDKKKSKPIRLRVLNVLRTWVENY 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 168229246 135 PEHFFDSPNLavMRQLMDYAGRHMPSAEFDKESRELLSRLEE 176
Cdd:cd06224   82 PYDFFDDEEL--LELLEEFLNRLVQEGALLQELKKLLRKLLK 121
 
Name Accession Description Interval E-value
REM cd06224
Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also ...
 63-176 4.41e-12

Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.


Pssm-ID: 100121  Cd Length: 122  Bit Score: 62.04  E-value: 4.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168229246  63 VEQMIAYIPAAVHYHDQLSISLFLAVYHRYCSTWEVLDLLMKTYPSFQP--------DCEQDQLTKSAIFNFLAHWLDTF 134
Cdd:cd06224    2 LEALIEHLTSTFDMPDPSFVSTFLLTYRSFTTPTELLEKLIERYEIAPPenleyndwDKKKSKPIRLRVLNVLRTWVENY 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 168229246 135 PEHFFDSPNLavMRQLMDYAGRHMPSAEFDKESRELLSRLEE 176
Cdd:cd06224   82 PYDFFDDEEL--LELLEEFLNRLVQEGALLQELKKLLRKLLK 121
RasGEF_N pfam00618
RasGEF N-terminal motif; A subset of guanine nucleotide exchange factor for Ras-like small ...
 63-144 1.06e-06

RasGEF N-terminal motif; A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this motif/domain N-terminal to the RasGef (Cdc25-like) domain.


Pssm-ID: 459873  Cd Length: 104  Bit Score: 46.53  E-value: 1.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168229246   63 VEQMIAYIPAAVHYHDQLSISLFLAVYHRYCSTWEVLDLLMKTYPSFQP-DCEQDQLTKSA--------IFNFLAHWLDT 133
Cdd:pfam00618   7 LEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPlDLSSDSYWISKktlpirirVLSVLRHWVEN 86

                          90
                  ....*....|.
gi 168229246  134 FPEHFFDSPNL 144
Cdd:pfam00618  87 YFSDFNDDPVL 97
RasGEFN smart00229
Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif; A subset of guanine ...
 85-174 8.83e-04

Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif; A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).


Pssm-ID: 214571  Cd Length: 127  Bit Score: 38.47  E-value: 8.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168229246    85 FLAVYHRYCSTWEVLDLLMKTYPSFQP-----DCEQDQLTKSAIFNFLAHWLDTFPEHFFDSPNLAVMRQLMDYAGRHMP 159
Cdd:smart00229  32 FLLTYRSFITTQELLQLLLYRYNAIPPeswveEKVNPRRVKNRVLNILRTWVENYWEDFEDDPKLISFLLEFLELVDDEK 111

                           90
                   ....*....|....*
gi 168229246   160 SAEFDKESRELLSRL 174
Cdd:smart00229 112 YPGLVTSLLNLLRRL 126
 
Name Accession Description Interval E-value
REM cd06224
Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also ...
 63-176 4.41e-12

Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.


Pssm-ID: 100121  Cd Length: 122  Bit Score: 62.04  E-value: 4.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168229246  63 VEQMIAYIPAAVHYHDQLSISLFLAVYHRYCSTWEVLDLLMKTYPSFQP--------DCEQDQLTKSAIFNFLAHWLDTF 134
Cdd:cd06224    2 LEALIEHLTSTFDMPDPSFVSTFLLTYRSFTTPTELLEKLIERYEIAPPenleyndwDKKKSKPIRLRVLNVLRTWVENY 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 168229246 135 PEHFFDSPNLavMRQLMDYAGRHMPSAEFDKESRELLSRLEE 176
Cdd:cd06224   82 PYDFFDDEEL--LELLEEFLNRLVQEGALLQELKKLLRKLLK 121
RasGEF_N pfam00618
RasGEF N-terminal motif; A subset of guanine nucleotide exchange factor for Ras-like small ...
 63-144 1.06e-06

RasGEF N-terminal motif; A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this motif/domain N-terminal to the RasGef (Cdc25-like) domain.


Pssm-ID: 459873  Cd Length: 104  Bit Score: 46.53  E-value: 1.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168229246   63 VEQMIAYIPAAVHYHDQLSISLFLAVYHRYCSTWEVLDLLMKTYPSFQP-DCEQDQLTKSA--------IFNFLAHWLDT 133
Cdd:pfam00618   7 LEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPlDLSSDSYWISKktlpirirVLSVLRHWVEN 86

                          90
                  ....*....|.
gi 168229246  134 FPEHFFDSPNL 144
Cdd:pfam00618  87 YFSDFNDDPVL 97
RasGEFN smart00229
Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif; A subset of guanine ...
 85-174 8.83e-04

Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif; A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).


Pssm-ID: 214571  Cd Length: 127  Bit Score: 38.47  E-value: 8.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168229246    85 FLAVYHRYCSTWEVLDLLMKTYPSFQP-----DCEQDQLTKSAIFNFLAHWLDTFPEHFFDSPNLAVMRQLMDYAGRHMP 159
Cdd:smart00229  32 FLLTYRSFITTQELLQLLLYRYNAIPPeswveEKVNPRRVKNRVLNILRTWVENYWEDFEDDPKLISFLLEFLELVDDEK 111

                           90
                   ....*....|....*
gi 168229246   160 SAEFDKESRELLSRL 174
Cdd:smart00229 112 YPGLVTSLLNLLRRL 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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