N-terminal domain of cubilin and similar proteins; Cubilin (CUBN, also called 460 kDa receptor, ...
38-132
1.42e-19
N-terminal domain of cubilin and similar proteins; Cubilin (CUBN, also called 460 kDa receptor, intestinal intrinsic factor receptor, intrinsic factor-cobalamin receptor, or intrinsic factor-vitamin B12 receptor) is an endocytic receptor which plays a role in lipoprotein, vitamin and iron metabolism by facilitating their uptake. It acts together with the 45-kDa transmembrane protein amnionless (AMN) to mediate endocytosis of the cobalamin (vitamin B12) binding intrinsic factor (CBLIF)-cobalamin complex. This model corresponds to the N-terminal domain of cubilin, which is responsible for the interaction with AMN. The cubilin interface with AMN is formed by the N-terminal strands of three cubilin chains.
:
Pssm-ID: 412063 Cd Length: 129 Bit Score: 87.39 E-value: 1.42e-19
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
432-468
3.26e-09
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
:
Pssm-ID: 238011 Cd Length: 38 Bit Score: 54.57 E-value: 3.26e-09
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
133-164
9.73e-07
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
:
Pssm-ID: 238011 Cd Length: 38 Bit Score: 47.63 E-value: 9.73e-07
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
167-207
1.40e-06
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
:
Pssm-ID: 238011 Cd Length: 38 Bit Score: 47.25 E-value: 1.40e-06
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
306-344
2.81e-06
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.
:
Pssm-ID: 463759 [Multi-domain] Cd Length: 36 Bit Score: 46.44 E-value: 2.81e-06
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
350-387
4.61e-05
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.
:
Pssm-ID: 463759 [Multi-domain] Cd Length: 36 Bit Score: 42.97 E-value: 4.61e-05
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
400-430
1.35e-04
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
:
Pssm-ID: 238011 Cd Length: 38 Bit Score: 41.47 E-value: 1.35e-04
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1400-1503
1.00e-31
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 120.96 E-value: 1.00e-31
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1747-1847
1.83e-31
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 120.19 E-value: 1.83e-31
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2698-2798
1.98e-31
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 120.19 E-value: 1.98e-31
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1635-1731
4.87e-30
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 116.34 E-value: 4.87e-30
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1057-1158
6.72e-30
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 115.57 E-value: 6.72e-30
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
599-699
1.09e-29
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 115.18 E-value: 1.09e-29
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1174-1274
3.97e-29
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 113.64 E-value: 3.97e-29
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
3046-3147
3.71e-28
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 110.94 E-value: 3.71e-28
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
941-1039
9.06e-28
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 109.79 E-value: 9.06e-28
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2230-2331
3.30e-27
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 108.25 E-value: 3.30e-27
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2345-2445
7.46e-27
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 107.09 E-value: 7.46e-27
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1289-1386
4.04e-25
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 102.08 E-value: 4.04e-25
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
3404-3504
6.90e-25
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 101.31 E-value: 6.90e-25
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1991-2088
2.88e-24
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 99.77 E-value: 2.88e-24
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2101-2210
3.97e-24
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 99.39 E-value: 3.97e-24
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
3179-3271
4.64e-24
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 99.00 E-value: 4.64e-24
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1861-1960
4.09e-23
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 96.31 E-value: 4.09e-23
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1519-1599
1.03e-22
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 95.15 E-value: 1.03e-22
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
825-923
2.62e-20
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 88.22 E-value: 2.62e-20
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
3520-3619
3.34e-20
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 88.22 E-value: 3.34e-20
N-terminal domain of cubilin and similar proteins; Cubilin (CUBN, also called 460 kDa receptor, ...
38-132
1.42e-19
N-terminal domain of cubilin and similar proteins; Cubilin (CUBN, also called 460 kDa receptor, intestinal intrinsic factor receptor, intrinsic factor-cobalamin receptor, or intrinsic factor-vitamin B12 receptor) is an endocytic receptor which plays a role in lipoprotein, vitamin and iron metabolism by facilitating their uptake. It acts together with the 45-kDa transmembrane protein amnionless (AMN) to mediate endocytosis of the cobalamin (vitamin B12) binding intrinsic factor (CBLIF)-cobalamin complex. This model corresponds to the N-terminal domain of cubilin, which is responsible for the interaction with AMN. The cubilin interface with AMN is formed by the N-terminal strands of three cubilin chains.
Pssm-ID: 412063 Cd Length: 129 Bit Score: 87.39 E-value: 1.42e-19
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2580-2684
2.10e-19
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 85.90 E-value: 2.10e-19
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
487-583
6.18e-19
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 84.36 E-value: 6.18e-19
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2461-2562
2.08e-18
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 82.82 E-value: 2.08e-18
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2929-3032
3.02e-18
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 82.44 E-value: 3.02e-18
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
726-813
1.25e-13
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 69.34 E-value: 1.25e-13
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2814-2916
1.13e-12
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 66.64 E-value: 1.13e-12
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
432-468
3.26e-09
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Pssm-ID: 238011 Cd Length: 38 Bit Score: 54.57 E-value: 3.26e-09
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
3292-3390
1.18e-08
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 55.09 E-value: 1.18e-08
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
133-164
9.73e-07
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Pssm-ID: 238011 Cd Length: 38 Bit Score: 47.63 E-value: 9.73e-07
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
167-207
1.40e-06
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Pssm-ID: 238011 Cd Length: 38 Bit Score: 47.25 E-value: 1.40e-06
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
306-344
2.81e-06
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.
Pssm-ID: 463759 [Multi-domain] Cd Length: 36 Bit Score: 46.44 E-value: 2.81e-06
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
436-464
3.98e-06
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.
Pssm-ID: 394967 Cd Length: 31 Bit Score: 45.84 E-value: 3.98e-06
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
260-295
1.36e-05
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Pssm-ID: 238011 Cd Length: 38 Bit Score: 44.55 E-value: 1.36e-05
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
350-387
4.61e-05
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.
Pssm-ID: 463759 [Multi-domain] Cd Length: 36 Bit Score: 42.97 E-value: 4.61e-05
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
133-161
5.09e-05
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.
Pssm-ID: 394967 Cd Length: 31 Bit Score: 42.76 E-value: 5.09e-05
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
400-430
1.35e-04
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Pssm-ID: 238011 Cd Length: 38 Bit Score: 41.47 E-value: 1.35e-04
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
302-340
5.00e-03
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Pssm-ID: 238011 Cd Length: 38 Bit Score: 37.23 E-value: 5.00e-03
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1400-1503
1.00e-31
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 120.96 E-value: 1.00e-31
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1747-1847
1.83e-31
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 120.19 E-value: 1.83e-31
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2698-2798
1.98e-31
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 120.19 E-value: 1.98e-31
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1635-1731
4.87e-30
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 116.34 E-value: 4.87e-30
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1057-1158
6.72e-30
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 115.57 E-value: 6.72e-30
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
599-699
1.09e-29
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 115.18 E-value: 1.09e-29
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1174-1274
3.97e-29
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 113.64 E-value: 3.97e-29
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
3046-3147
3.71e-28
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 110.94 E-value: 3.71e-28
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
941-1039
9.06e-28
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 109.79 E-value: 9.06e-28
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2230-2331
3.30e-27
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 108.25 E-value: 3.30e-27
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2345-2445
7.46e-27
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 107.09 E-value: 7.46e-27
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1289-1386
4.04e-25
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 102.08 E-value: 4.04e-25
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
3404-3504
6.90e-25
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 101.31 E-value: 6.90e-25
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1991-2088
2.88e-24
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 99.77 E-value: 2.88e-24
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2101-2210
3.97e-24
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 99.39 E-value: 3.97e-24
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
3179-3271
4.64e-24
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 99.00 E-value: 4.64e-24
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1861-1960
4.09e-23
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 96.31 E-value: 4.09e-23
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
1519-1599
1.03e-22
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 95.15 E-value: 1.03e-22
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
825-923
2.62e-20
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 88.22 E-value: 2.62e-20
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
3520-3619
3.34e-20
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 88.22 E-value: 3.34e-20
N-terminal domain of cubilin and similar proteins; Cubilin (CUBN, also called 460 kDa receptor, ...
38-132
1.42e-19
N-terminal domain of cubilin and similar proteins; Cubilin (CUBN, also called 460 kDa receptor, intestinal intrinsic factor receptor, intrinsic factor-cobalamin receptor, or intrinsic factor-vitamin B12 receptor) is an endocytic receptor which plays a role in lipoprotein, vitamin and iron metabolism by facilitating their uptake. It acts together with the 45-kDa transmembrane protein amnionless (AMN) to mediate endocytosis of the cobalamin (vitamin B12) binding intrinsic factor (CBLIF)-cobalamin complex. This model corresponds to the N-terminal domain of cubilin, which is responsible for the interaction with AMN. The cubilin interface with AMN is formed by the N-terminal strands of three cubilin chains.
Pssm-ID: 412063 Cd Length: 129 Bit Score: 87.39 E-value: 1.42e-19
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2580-2684
2.10e-19
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 85.90 E-value: 2.10e-19
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
487-583
6.18e-19
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 84.36 E-value: 6.18e-19
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2461-2562
2.08e-18
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 82.82 E-value: 2.08e-18
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2929-3032
3.02e-18
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 82.44 E-value: 3.02e-18
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
726-813
1.25e-13
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 69.34 E-value: 1.25e-13
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
2814-2916
1.13e-12
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 66.64 E-value: 1.13e-12
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
432-468
3.26e-09
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Pssm-ID: 238011 Cd Length: 38 Bit Score: 54.57 E-value: 3.26e-09
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
3292-3390
1.18e-08
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Pssm-ID: 214483 [Multi-domain] Cd Length: 102 Bit Score: 55.09 E-value: 1.18e-08
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
133-164
9.73e-07
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Pssm-ID: 238011 Cd Length: 38 Bit Score: 47.63 E-value: 9.73e-07
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
167-207
1.40e-06
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Pssm-ID: 238011 Cd Length: 38 Bit Score: 47.25 E-value: 1.40e-06
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
306-344
2.81e-06
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.
Pssm-ID: 463759 [Multi-domain] Cd Length: 36 Bit Score: 46.44 E-value: 2.81e-06
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
436-464
3.98e-06
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.
Pssm-ID: 394967 Cd Length: 31 Bit Score: 45.84 E-value: 3.98e-06
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
260-295
1.36e-05
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Pssm-ID: 238011 Cd Length: 38 Bit Score: 44.55 E-value: 1.36e-05
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
350-387
4.61e-05
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.
Pssm-ID: 463759 [Multi-domain] Cd Length: 36 Bit Score: 42.97 E-value: 4.61e-05
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
133-161
5.09e-05
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.
Pssm-ID: 394967 Cd Length: 31 Bit Score: 42.76 E-value: 5.09e-05
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
134-161
6.66e-05
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Pssm-ID: 238010 Cd Length: 36 Bit Score: 42.46 E-value: 6.66e-05
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
435-468
8.94e-05
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Pssm-ID: 238010 Cd Length: 36 Bit Score: 42.08 E-value: 8.94e-05
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
400-430
1.35e-04
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Pssm-ID: 238011 Cd Length: 38 Bit Score: 41.47 E-value: 1.35e-04
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
306-344
6.10e-04
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.
Pssm-ID: 464251 [Multi-domain] Cd Length: 36 Bit Score: 39.53 E-value: 6.10e-04
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
263-301
8.32e-04
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Pssm-ID: 238010 Cd Length: 36 Bit Score: 39.38 E-value: 8.32e-04
Human growth factor-like EGF; hEGF, or human growth factor-like EGF, domains have six ...
441-458
3.20e-03
Human growth factor-like EGF; hEGF, or human growth factor-like EGF, domains have six conserved residues disulfide-bonded into the characteriztic 'ababcc' pattern. They are involved in growth and proliferation of cells, in proteins of the Notch/Delta pathway, neurogulin and selectins. hEGFs are also found in mosaic proteins with four-disulfide laminin EGFs such as aggrecan and perlecan. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal Cys residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In hEGFs the C-terminal thiol resides in the beta-turn, resulting in shorter loop-lengths between the Cys residues of disulfide 'c', typically C[8-9]XC. These shorter loop-lengths are also typical of the four-disulfide EGF domains, laminin ad integrin. Tandem hEGF domains have six linking residues between terminal cysteines of adjacent domains. hEGF domains may or may not bind calcium in the linker region. hEGF domains with the consensus motif CXD4X[F,Y]XCXC are hydroxylated exclusively in the Asp residue.
Pssm-ID: 463660 Cd Length: 22 Bit Score: 37.31 E-value: 3.20e-03
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
302-340
5.00e-03
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Pssm-ID: 238011 Cd Length: 38 Bit Score: 37.23 E-value: 5.00e-03
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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